Query 020702
Match_columns 322
No_of_seqs 211 out of 1436
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 100.0 2.5E-29 8.6E-34 209.7 12.1 109 24-135 15-123 (127)
2 3d7c_A General control of amin 100.0 8.5E-29 2.9E-33 202.1 11.3 104 27-135 4-107 (112)
3 4alg_A Bromodomain-containing 100.0 9.2E-29 3.1E-33 212.8 10.5 111 25-138 27-137 (154)
4 3g0l_A Hwalp4, bromodomain adj 100.0 1.7E-28 5.7E-33 201.7 11.5 102 30-136 13-114 (117)
5 3p1f_A CREB-binding protein; s 100.0 1.6E-28 5.6E-33 202.4 11.3 108 26-136 7-115 (119)
6 3jvl_A Bromodomain-containing 100.0 5.8E-29 2E-33 205.4 7.9 104 30-136 9-115 (120)
7 2ouo_A HUNK1 protein, bromodom 100.0 1.6E-28 5.5E-33 205.6 10.6 103 31-136 23-128 (130)
8 2i7k_A Bromodomain-containing 100.0 6.2E-28 2.1E-32 198.6 12.2 106 26-136 4-109 (117)
9 3q2e_A Bromodomain and WD repe 100.0 1.5E-28 5.1E-33 203.9 8.5 108 27-139 7-115 (123)
10 3fkm_X Signaling protein; brom 99.9 3.3E-28 1.1E-32 211.7 10.9 108 25-135 16-123 (166)
11 1e6i_A Transcriptional activat 99.9 5.9E-28 2E-32 199.8 11.0 102 32-139 15-116 (121)
12 2d9e_A Peregrin; four-helix bu 99.9 7.9E-28 2.7E-32 199.0 11.6 101 30-135 7-107 (121)
13 2dat_A Possible global transcr 99.9 6.3E-28 2.1E-32 200.1 10.8 106 26-136 9-120 (123)
14 3nxb_A CAT eye syndrome critic 99.9 6E-28 2.1E-32 198.1 10.5 102 28-134 14-115 (116)
15 3mb3_A PH-interacting protein; 99.9 5E-28 1.7E-32 203.7 9.5 106 29-139 20-126 (135)
16 2yyn_A Transcription intermedi 99.9 1.8E-27 6.2E-32 200.4 11.5 108 25-139 16-125 (135)
17 3rcw_A Bromodomain-containing 99.9 1.5E-27 5.1E-32 200.8 10.0 109 22-135 5-113 (135)
18 3mb4_A Protein polybromo-1; PB 99.9 2.1E-27 7.3E-32 197.1 10.6 102 30-136 15-122 (124)
19 3hme_A Bromodomain-containing 99.9 3.1E-27 1.1E-31 196.0 10.8 101 30-135 13-113 (123)
20 2grc_A Probable global transcr 99.9 2.2E-27 7.4E-32 198.5 9.8 103 28-135 9-118 (129)
21 3k2j_A Protein polybromo-1; PB 99.9 5.3E-27 1.8E-31 196.4 10.9 110 21-135 8-123 (130)
22 3mqm_A Probable histone-lysine 99.9 3E-27 1E-31 196.7 9.2 106 28-138 7-118 (126)
23 3ljw_A Protein polybromo-1; al 99.9 6E-27 2.1E-31 193.4 10.1 103 28-135 6-114 (120)
24 3iu5_A Protein polybromo-1; PB 99.9 5.7E-27 1.9E-31 192.4 9.4 102 31-137 6-113 (116)
25 3uv4_A Second bromodomain of h 99.9 6.9E-27 2.3E-31 201.9 9.2 102 31-137 30-132 (158)
26 3o36_A Transcription intermedi 99.9 1E-25 3.5E-30 198.8 10.1 103 29-137 80-184 (184)
27 2ri7_A Nucleosome-remodeling f 99.9 8E-26 2.7E-30 197.5 9.3 101 30-135 72-172 (174)
28 3tlp_A Protein polybromo-1; PB 99.9 1.8E-25 6E-30 191.3 10.8 108 30-142 24-138 (150)
29 3dai_A ATPase family AAA domai 99.9 3E-25 1E-29 185.7 11.0 101 28-133 8-112 (130)
30 2dkw_A Hypothetical protein KI 99.9 2.7E-24 9.3E-29 180.2 11.5 103 24-136 6-112 (131)
31 3u5n_A E3 ubiquitin-protein li 99.9 2.1E-24 7.2E-29 193.8 11.0 108 29-139 80-204 (207)
32 2ro1_A Transcription intermedi 99.9 7.4E-25 2.5E-29 194.4 7.0 104 25-139 72-180 (189)
33 3uv5_A Transcription initiatio 99.9 2.8E-24 9.5E-29 199.9 10.2 104 28-136 12-115 (265)
34 3uv5_A Transcription initiatio 99.9 1.9E-23 6.7E-28 194.2 11.3 101 31-136 137-238 (265)
35 3aad_A Transcription initiatio 99.9 2E-23 6.8E-28 196.7 7.0 102 29-135 46-147 (292)
36 3aad_A Transcription initiatio 99.9 1.5E-22 5E-27 190.8 10.8 100 31-135 170-270 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.5E-22 5E-27 192.3 6.6 87 44-135 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 2.6E-22 9E-27 194.2 7.2 87 44-135 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 8.2E-21 2.8E-25 183.7 6.8 99 30-135 78-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.3E-20 7.8E-25 177.2 7.2 99 30-135 28-129 (311)
41 2jns_A Bromodomain-containing 99.7 3.5E-18 1.2E-22 134.1 4.7 72 193-264 14-86 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 1.8E-16 6.1E-21 134.3 11.2 97 30-135 7-109 (147)
43 3lqh_A Histone-lysine N-methyl 99.6 6.1E-16 2.1E-20 136.1 7.0 99 28-142 73-171 (183)
44 2lm0_A AF4/FMR2 family member 96.6 0.0028 9.4E-08 51.3 5.4 62 196-258 58-120 (125)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.96 E-value=2.5e-29 Score=209.73 Aligned_cols=109 Identities=36% Similarity=0.647 Sum_probs=103.8
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 020702 24 KNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 103 (322)
Q Consensus 24 k~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLI 103 (322)
.+....+|+.+|..||+.|++|+.+|+|..|||+..+++||||++|++||||+||++||+++. |.++.+|.+||+||
T Consensus 15 ~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li 91 (127)
T 2oss_A 15 PKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTM 91 (127)
T ss_dssp CCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHH
Confidence 344567899999999999999999999999999986779999999999999999999999999 99999999999999
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 104 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 104 f~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|.||+.||+++|.|+.+|..|++.|++.|.++
T Consensus 92 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 92 FTNCYIYNKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999887
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.96 E-value=8.5e-29 Score=202.07 Aligned_cols=104 Identities=29% Similarity=0.427 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 27 SASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 27 ~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
....++..|..|+..|++|+.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.|
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~li~~N 78 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRY---YVTRKLFVADLQRVIAN 78 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCC---CcCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999876 9999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|+.||+++|.++.+|..|+..|++.|.++
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 79 CREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999987
No 3
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=9.2e-29 Score=212.78 Aligned_cols=111 Identities=32% Similarity=0.586 Sum_probs=105.4
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 25 NLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 25 ~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
+....+++.+|..||+.|++++.+|+|..||++..+++|+||++|++||||+||++||+++. |.++.+|.+||+|||
T Consensus 27 ~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 27 GRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNY---YWAASECMQDFNTMF 103 (154)
T ss_dssp CCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999997789999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcC
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 138 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 138 (322)
.||+.||+++|.|+.+|..|++.|++.|..+.+.
T Consensus 104 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 104 TNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 9999999999999999999999999999998443
No 4
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=1.7e-28 Score=201.73 Aligned_cols=102 Identities=33% Similarity=0.607 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
.....|..|++.|++|+.+++|..||++.. +|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 87 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCET 87 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
||+++|.++.+|..|++.|++.|.+++
T Consensus 88 yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 88 FNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
No 5
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=1.6e-28 Score=202.37 Aligned_cols=108 Identities=31% Similarity=0.500 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHHHHHHHc-CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 26 LSASLLQFFVRQARSFITQ-HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 26 ~~~~~lq~~c~~il~~L~~-~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
.+.+++++.|..++..|++ ++.++||..||++..+++|+||++|++||||+||++||+++. |.++.+|.+||+|||
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~ 83 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMF 83 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Confidence 5678999999999999988 789999999999986669999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
.||..||+++|.++.+|..|++.|++.|..++
T Consensus 84 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 84 NNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998874
No 6
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=5.8e-29 Score=205.38 Aligned_cols=104 Identities=42% Similarity=0.721 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCC---CCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 30 LLQFFVRQARSFITQHKW---AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~---a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
...+.|..||..|++++. +|||..||++..+++|+||++|++||||+||++||+++. |.++.+|.+||+|||.|
T Consensus 9 ~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 9 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE---YRDAQEFGADVRLMFSN 85 (120)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHHHHH
Confidence 556778999999999876 999999999999899999999999999999999999999 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
|+.||+++|.|+.+|..|+..|++.|.++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999883
No 7
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=1.6e-28 Score=205.63 Aligned_cols=103 Identities=43% Similarity=0.753 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCC---CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 31 LQFFVRQARSFITQHK---WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 31 lq~~c~~il~~L~~~~---~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
..+.|..||..|++++ ++|||..|||+..+++|+||++|++||||+||++||+++. |.++.+|.+||+|||.||
T Consensus 23 ~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na 99 (130)
T 2ouo_A 23 QLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHH
Confidence 3467999999999887 4899999999988889999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
+.||+++|.|+.+|..|+..|++.|.++.
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999873
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=6.2e-28 Score=198.59 Aligned_cols=106 Identities=28% Similarity=0.307 Sum_probs=100.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 020702 26 LSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 105 (322)
Q Consensus 26 ~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~ 105 (322)
.....++..|..||+.|++++.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.
T Consensus 4 ~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Li~~ 78 (117)
T 2i7k_A 4 VEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNND---YQSIEELKDNFKLMCT 78 (117)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTS---CCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999865 9999999999999999999999999 9999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 106 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 106 Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
||+.||+++|.++.+|..|.+.|++.|....
T Consensus 79 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 79 NAMIYNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp HHHHTSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998763
No 9
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=203.87 Aligned_cols=108 Identities=31% Similarity=0.494 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 020702 27 SASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 27 ~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
....+++.|..||+.|++|+.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|..||+|||.|
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 81 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGN---YDSPLEFCKDIRLIFSN 81 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999986 9999999999999999999999999 99999999999999999
Q ss_pred ccccCCC-CCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 107 AMKYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 107 a~~yN~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
|+.||++ +|.|+.+|..|+..|++.|..+++.+
T Consensus 82 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 82 AKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 99999999999999999999986543
No 10
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=3.3e-28 Score=211.74 Aligned_cols=108 Identities=26% Similarity=0.387 Sum_probs=99.0
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 25 NLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 25 ~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
......++..|..||..|++++.+++|..||++..+++|+||++|++||||+||++||.++. |.++.+|.+||+|||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~Dv~Lif 92 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQ---YAYPSEFVKDVQLIF 92 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHH
Confidence 34567888999999999999999999999999987789999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
.||+.||+++|.|+.+|..|.+.|++.|..+
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 93 DNCSLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHHHHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999987
No 11
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=5.9e-28 Score=199.78 Aligned_cols=102 Identities=32% Similarity=0.613 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccC
Q 020702 32 QFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 111 (322)
Q Consensus 32 q~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN 111 (322)
...|..||..|++|+.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||+.||
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~yN 89 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNK---YQKMEDFIYDARLVFNNCRMYN 89 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 4679999999999999999999999876 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 112 DERDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 112 ~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
+++|.++.+|..|++.|++.|..+ |.|
T Consensus 90 ~~~s~i~~~A~~L~~~f~~~~~~~-p~~ 116 (121)
T 1e6i_A 90 GENTSYYKYANRLEKFFNNKVKEI-PEY 116 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHc-ccc
Confidence 999999999999999999999987 554
No 12
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=7.9e-28 Score=199.05 Aligned_cols=101 Identities=26% Similarity=0.358 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
.++..|..||+.|++++.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||+.
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 81 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYR---YLNFDDFEEDFNLIVSNCLK 81 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999886 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||+++|.++.+|..|++.|++.|..+
T Consensus 82 yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 82 YNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877
No 13
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=200.14 Aligned_cols=106 Identities=24% Similarity=0.322 Sum_probs=100.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCC------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHH
Q 020702 26 LSASLLQFFVRQARSFITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 99 (322)
Q Consensus 26 ~~~~~lq~~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~D 99 (322)
.....++..|..||+.|+.++ .+++|..||+... +|+||++|++||||+||++||+++. |.++.+|.+|
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D 83 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLGDLEKD 83 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTC---CCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHH
Confidence 446788999999999999986 6999999999876 9999999999999999999999999 9999999999
Q ss_pred HHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 100 vrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
|+|||.||+.||+++|.|+.+|..|++.|++.|+++.
T Consensus 84 ~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 84 VMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999873
No 14
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=6e-28 Score=198.13 Aligned_cols=102 Identities=28% Similarity=0.520 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
...+...|..||+.|++++.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na 88 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGL---YCTKEEFVNDMKTMFRNC 88 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999986 9999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHh
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQ 134 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~ 134 (322)
+.||+++|.++.+|..|+..|++.|.+
T Consensus 89 ~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 89 RKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 15
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=203.70 Aligned_cols=106 Identities=29% Similarity=0.488 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
..++..|..||..|++++.+++|..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||+
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~ 94 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGN---YESPMELCKDVRLIFSNSK 94 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999866 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCC-CCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 109 KYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 109 ~yN~~-~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
.||++ +|.|+.+|..|++.|++.|..+++.+
T Consensus 95 ~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 95 AYTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 99999999999999999999986543
No 16
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=200.45 Aligned_cols=108 Identities=30% Similarity=0.520 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcC--CCCCCCCCHHHHHHHHHH
Q 020702 25 NLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDG--KDGTGYRNVREIYADVRL 102 (322)
Q Consensus 25 ~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~~~~Y~s~~ef~~DvrL 102 (322)
.++. ..++.|..||..|++|+.+++|..||+.. +|+||++|++||||+||++||++ +. |.++.+|.+||+|
T Consensus 16 ~m~p-~~~~~c~~il~~L~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmDL~tI~~kL~~~~~~---Y~s~~ef~~Dv~L 88 (135)
T 2yyn_A 16 KLTP-IDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSM---YSKPEDFVADFRL 88 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHHTSGGGGGGSSCCCTT---STTHHHHCSSCCCHHHHHHHHHSSSCC---CSSHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHhCccchhhcCCCccc---CCCHHHHcCCCCCHHHHHHHHhccccC---CCCHHHHHHHHHH
Confidence 3444 45678999999999999999999999973 89999999999999999999998 47 9999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 103 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 103 If~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
||.||+.||+++|.|+.+|..|+..|++.|.++++.+
T Consensus 89 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 89 IFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998765
No 17
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=200.80 Aligned_cols=109 Identities=26% Similarity=0.405 Sum_probs=100.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 020702 22 GCKNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101 (322)
Q Consensus 22 ~~k~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dvr 101 (322)
.+..+....++..|..||+.|++|+.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+
T Consensus 5 ~~~~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~ 79 (135)
T 3rcw_A 5 VAMELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQG---YKNLHEFEEDFD 79 (135)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHH
Confidence 34444445688999999999999999999999999986 9999999999999999999999999 999999999999
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 102 LIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|||.||+.||+++|.+|.+|..|.+.|++.|...
T Consensus 80 li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 80 LIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=2.1e-27 Score=197.14 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHc------CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 020702 30 LLQFFVRQARSFITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 103 (322)
Q Consensus 30 ~lq~~c~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLI 103 (322)
.+++.|..|++.|+. |+.+++|..||+... +|+||++|++||||+||++||+++. |.++.+|.+||+||
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li 89 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANK---YQDIDSMVEDFVMM 89 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHH
Confidence 678889999999998 667899999999876 9999999999999999999999999 99999999999999
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 104 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 104 f~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
|.||+.||+++|.|+.+|..|.+.|++.|.++.
T Consensus 90 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 90 FNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999873
No 19
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=195.99 Aligned_cols=101 Identities=27% Similarity=0.329 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
-++..|..|+..|++++.+++|..||++.. +||||++|++||||+||++||+++. |.++.+|.+||+|||.||+.
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 87 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANE---YKSVTEFKADFKLMCDNAMT 87 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999886 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||+++|.++.+|..|.+.|++.|.+.
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 88 YNRPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 20
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=2.2e-27 Score=198.48 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHH
Q 020702 28 ASLLQFFVRQARSFITQHK-------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADV 100 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~-------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dv 100 (322)
+..++..|..||+.|++++ .+++|..||+... +|+||++|++||||+||++||.++. |.++.+|.+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv 83 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLNDLEKDV 83 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHH
Confidence 4678899999999999875 5899999999776 9999999999999999999999999 99999999999
Q ss_pred HHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 101 RLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 101 rLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
+|||.||+.||+++|.|+.+|..|++.|++.|..+
T Consensus 84 ~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 118 (129)
T 2grc_A 84 MLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKI 118 (129)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998
No 21
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=196.40 Aligned_cols=110 Identities=24% Similarity=0.384 Sum_probs=100.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHcCC------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHH
Q 020702 21 GGCKNLSASLLQFFVRQARSFITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVR 94 (322)
Q Consensus 21 ~~~k~~~~~~lq~~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ 94 (322)
++.+......+..+|..+++.|.... .++||..||+... +|+||++|++||||+||++||+++. |.++.
T Consensus 8 ~~~~~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~---Y~s~~ 82 (130)
T 3k2j_A 8 SSGVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQE---YETLD 82 (130)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CSSHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCC---CCCHH
Confidence 34455667788889999999998754 4999999999876 9999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 95 EIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 95 ef~~DvrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
+|.+||+|||.||+.||+++|.|+.+|..|++.|++.|..+
T Consensus 83 ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 83 HLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987
No 22
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=196.73 Aligned_cols=106 Identities=25% Similarity=0.302 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHcCC------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 020702 28 ASLLQFFVRQARSFITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dvr 101 (322)
...++..|..|++.|+.+. .++||..||+... +|+||++|++||||+||++||.++. |.++.+|.+||+
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~ 81 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGY---YKTVEAFDADML 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHH
Confidence 4578889999999999864 4999999999886 9999999999999999999999999 999999999999
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcC
Q 020702 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 138 (322)
Q Consensus 102 LIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~ 138 (322)
|||.||+.||+++|.++.+|..|++.|++.|..+.+.
T Consensus 82 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 82 KVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987443
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=6e-27 Score=193.37 Aligned_cols=103 Identities=24% Similarity=0.358 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHcCCC------CCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 020702 28 ASLLQFFVRQARSFITQHKW------AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 101 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~Dvr 101 (322)
...++..|..+++.|+.+.. +++|..||+... +|+||++|++||||+||++||.++. |.++.+|.+||+
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~ 80 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGS---YKSIHAMAKDID 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHH
Confidence 56788999999999998766 999999999876 9999999999999999999999999 999999999999
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 102 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 102 LIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|||.||+.||+++|.++.+|..|++.|++.|.++
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 81 LLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987
No 24
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=5.7e-27 Score=192.37 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 020702 31 LQFFVRQARSFITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 104 (322)
Q Consensus 31 lq~~c~~il~~L~~~------~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf 104 (322)
....|..|+..|+++ +.+++|..||+... +|+||++|++||||+||++||+++. |.++.+|.+||+|||
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLLF 80 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHH
Confidence 356789999999987 46999999999876 9999999999999999999999999 999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 020702 105 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 137 (322)
Q Consensus 105 ~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 137 (322)
.||+.||+++|.++.+|..|++.|++.+.++..
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998844
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.94 E-value=6.9e-27 Score=201.87 Aligned_cols=102 Identities=25% Similarity=0.500 Sum_probs=92.2
Q ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 31 LQFFVRQARSF-ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 31 lq~~c~~il~~-L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
+...+..|+.. |+.++.+|||..||++.. +|+||++|++||||+||++||.++. |.++.+|.+||+|||.||+.
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 33445555544 667899999999999886 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQLLP 137 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 137 (322)
||+++|.|+.+|..|...|++.|..+..
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998843
No 26
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=1e-25 Score=198.75 Aligned_cols=103 Identities=30% Similarity=0.526 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcC--CCCCCCCCHHHHHHHHHHHHhc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDG--KDGTGYRNVREIYADVRLVFKN 106 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~~~~Y~s~~ef~~DvrLIf~N 106 (322)
...++.|..||..|+.|+.+++|..||+.. +|+||++|++||||+||++||++ +. |.++.+|.+||+|||.|
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~---Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 80 PIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSM---YSKPEDFVADFRLIFQN 153 (184)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCS---CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHH
Confidence 466788999999999999999999999864 89999999999999999999998 67 99999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 137 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~ 137 (322)
|+.||+++|.|+.+|..|++.|++.|.+++|
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999876
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=8e-26 Score=197.50 Aligned_cols=101 Identities=30% Similarity=0.491 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 30 LLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
..+..|..||..|+.|+.+++|..||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||+.
T Consensus 72 ~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~ 146 (174)
T 2ri7_A 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRY 146 (174)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999876 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||+++|.++.+|..|++.|++.|+.+
T Consensus 147 yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 147 YNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998775
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=191.35 Aligned_cols=108 Identities=24% Similarity=0.374 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCC-------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q 020702 30 LLQFFVRQARSFITQHK-------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 102 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~-------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrL 102 (322)
..+..|..|+..|+++. .+++|..||+... +|+||++|++||||+||++||+++. |.++.+|.+||+|
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~l 98 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDK---YAGEEGMIEDMKL 98 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHH
Confidence 34567888888887754 4999999999876 9999999999999999999999999 9999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchhH
Q 020702 103 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 142 (322)
Q Consensus 103 If~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~e 142 (322)
||.||+.||+++|.|+.+|..|++.|++.|..+.+...++
T Consensus 99 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 99 MFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 9999999999999999999999999999999997665433
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.92 E-value=3e-25 Score=185.66 Aligned_cols=101 Identities=30% Similarity=0.443 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
-..++..|..++..|+.++.++||..||++.. +|+||++|++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHK---YLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999986 9999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHH----HHHHHHHHHHHHHHHH
Q 020702 108 MKYNDERDDV----HVMAKSLLEKFEEKWL 133 (322)
Q Consensus 108 ~~yN~~~s~v----~~~A~~L~~~Fe~~~~ 133 (322)
+.||+++|++ +..|..|.+.|...+.
T Consensus 83 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 83 LEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 5677777777777765
No 30
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=180.17 Aligned_cols=103 Identities=28% Similarity=0.470 Sum_probs=94.6
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 020702 24 KNLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 103 (322)
Q Consensus 24 k~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLI 103 (322)
......+|+..|..|++.|+.++.++||..| +||||++|++||||+||++||.++. |.++.+|.+||+||
T Consensus 6 e~~~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~~f~~D~~Li 75 (131)
T 2dkw_A 6 SGNTLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHN---YLTAKDFLKDIDLI 75 (131)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTC---CCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCC---CCCHHHHHHHHHHH
Confidence 3345778999999999999999999999998 7999999999999999999999999 99999999999999
Q ss_pred HhcccccCCCCCH----HHHHHHHHHHHHHHHHHhhC
Q 020702 104 FKNAMKYNDERDD----VHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 104 f~Na~~yN~~~s~----v~~~A~~L~~~Fe~~~~~i~ 136 (322)
|.||+.||+++|+ |+..|..|.+.|...++.-+
T Consensus 76 ~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l 112 (131)
T 2dkw_A 76 CSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAEL 112 (131)
T ss_dssp HHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 56899999999998886443
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.91 E-value=2.1e-24 Score=193.80 Aligned_cols=108 Identities=30% Similarity=0.512 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
...++.|..||..|++|+.+++|..||+.. +|+||++|++||||+||++||+++.++.|.++.+|.+||+|||.||+
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~ 156 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHELSIEFQEPVPAS---IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCE 156 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGSSCCCTT---STTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccCChh---hccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999873 89999999999999999999998322239999999999999999999
Q ss_pred ccCC-----------------CCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 109 KYND-----------------ERDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 109 ~yN~-----------------~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
.||+ ++|.|+.+|..|+..|++.|..++|..
T Consensus 157 ~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 157 RFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 999999999999999999999998863
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.91 E-value=7.4e-25 Score=194.35 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=95.0
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccC--CCCChHHHHHHhcCC---CCCCCCCHHHHHHH
Q 020702 25 NLSASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIE--KPMDFSTIKNKMDGK---DGTGYRNVREIYAD 99 (322)
Q Consensus 25 ~~~~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk--~PMDL~tIk~kL~~~---~~~~Y~s~~ef~~D 99 (322)
+++... ++.|..||..|+.|+.+|||++||+ |+||++|+ +||||+||++||+++ . |.++.+|.+|
T Consensus 72 ~m~~~~-~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~---Y~s~~eF~~D 141 (189)
T 2ro1_A 72 KLSPAN-QRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPP---YSSPQEFAQD 141 (189)
T ss_dssp SSCHHH-HHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSC---CSCHHHHHHH
T ss_pred CCCHHH-HHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcc---cCCHHHHHHH
Confidence 455544 4679999999999999999999998 67999998 899999999999999 7 9999999999
Q ss_pred HHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHhhCcCc
Q 020702 100 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 139 (322)
Q Consensus 100 vrLIf~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~ 139 (322)
|+|||+||++|| +++.++.+|..|++.|++.|+++++..
T Consensus 142 v~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 142 VGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999 588889999999999999999997653
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=2.8e-24 Score=199.86 Aligned_cols=104 Identities=23% Similarity=0.451 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
...++..|..||..|++++.+++|..||++.. +|+||++|++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na 86 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNS 86 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCC---CCCHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999987 9999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
+.||+++|.|+.+|..|...|++.|..+.
T Consensus 87 ~~yN~~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 87 ATYNGPKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998873
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=1.9e-23 Score=194.16 Aligned_cols=101 Identities=26% Similarity=0.506 Sum_probs=92.5
Q ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 31 LQFFVRQARSF-ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 31 lq~~c~~il~~-L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
+...|..++.. ++.++.+|||..||++.. +|+||++|++||||+||++||.++. |.++.+|..||+|||.||+.
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~lif~Na~~ 211 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVK 211 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 34445555543 778999999999999887 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQLL 136 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i~ 136 (322)
||+++|.|+.+|..|...|++.|..+.
T Consensus 212 yN~~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 212 YNGPESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp HTCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999883
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=2e-23 Score=196.67 Aligned_cols=102 Identities=24% Similarity=0.471 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 020702 29 SLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 108 (322)
Q Consensus 29 ~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~ 108 (322)
..++..|..||+.|+.++.+++|+.||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||+
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~---Y~s~~~f~~D~~li~~Na~ 120 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNSA 120 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCC---cCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999986 9999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 109 KYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 109 ~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
.||+++|.++.+|..|.+.|++.|..+
T Consensus 121 ~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 121 TYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999888765
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=190.78 Aligned_cols=100 Identities=26% Similarity=0.518 Sum_probs=91.1
Q ss_pred HHHHHHHHH-HHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 020702 31 LQFFVRQAR-SFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 109 (322)
Q Consensus 31 lq~~c~~il-~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~ 109 (322)
+...+..++ ..|+.++.+++|+.||++.. +|+||++|++||||+||++||.++. |.++.+|..||+|||.||+.
T Consensus 170 ~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~Li~~Na~~ 244 (292)
T 3aad_A 170 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVK 244 (292)
T ss_dssp HHHHHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 333444444 34788999999999999876 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 110 YNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 110 yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
||+++|.+|.+|..|...|++.|..+
T Consensus 245 yN~~~s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 245 YNGPESQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.86 E-value=1.5e-22 Score=192.28 Aligned_cols=87 Identities=30% Similarity=0.471 Sum_probs=83.8
Q ss_pred cCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHH
Q 020702 44 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 123 (322)
Q Consensus 44 ~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~ 123 (322)
.|+.+++|+.||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||++||+++|.|+.+|..
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 251 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 251 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTC---CCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3678999999999886 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 020702 124 LLEKFEEKWLQL 135 (322)
Q Consensus 124 L~~~Fe~~~~~i 135 (322)
|+..|++.|.+.
T Consensus 252 L~~~f~~~~~~~ 263 (311)
T 2r0y_A 252 LTNYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=2.6e-22 Score=194.15 Aligned_cols=87 Identities=30% Similarity=0.471 Sum_probs=83.8
Q ss_pred cCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHH
Q 020702 44 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 123 (322)
Q Consensus 44 ~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na~~yN~~~s~v~~~A~~ 123 (322)
.|+.+|+|+.||++.. +|+||++|++||||+||++||+++. |.++.+|.+||+|||.||+.||+++|.||.+|..
T Consensus 227 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 301 (361)
T 2r10_A 227 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 301 (361)
T ss_dssp SSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTC---CCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3678999999999886 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 020702 124 LLEKFEEKWLQL 135 (322)
Q Consensus 124 L~~~Fe~~~~~i 135 (322)
|+..|++.|.+.
T Consensus 302 L~~~f~~~~~~~ 313 (361)
T 2r10_A 302 LTNYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999984
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.82 E-value=8.2e-21 Score=183.71 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHhc
Q 020702 30 LLQFFVRQARSFITQ--HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYR-NVREIYADVRLVFKN 106 (322)
Q Consensus 30 ~lq~~c~~il~~L~~--~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~-s~~ef~~DvrLIf~N 106 (322)
.+..+|..+|+.+.. +..+++|+.||+... +||||++|++||||+||++|| +. |. ++.+|.+||+|||.|
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~---y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YE---YEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CC---STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hc---cCCCHHHHHHHHHHHHHH
Confidence 346789999999866 356899999999877 999999999999999999998 34 55 899999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|+.||+++|.|+.+|..|++.|++.|.+.
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999875
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.80 E-value=2.3e-20 Score=177.18 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHhc
Q 020702 30 LLQFFVRQARSFITQ--HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYR-NVREIYADVRLVFKN 106 (322)
Q Consensus 30 ~lq~~c~~il~~L~~--~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~-s~~ef~~DvrLIf~N 106 (322)
.++.+|..+|..+.. +..+++|+.||+... +|+||++|++||||+||++|| +. |. ++.+|.+||+|||.|
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~---y~~s~~~f~~D~~li~~N 100 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YE---YEDGPSNFLLDVELLTKN 100 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CC---STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hc---ccCCHHHHHHHHHHHHHH
Confidence 455666666666655 347999999999876 999999999999999999999 44 65 899999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 107 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 107 a~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|++||+++|.|+.+|..|++.|++.|.+.
T Consensus 101 a~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 101 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999875
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=3.5e-18 Score=134.07 Aligned_cols=72 Identities=29% Similarity=0.567 Sum_probs=68.9
Q ss_pred hhccCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCC-CCCCeEEEeCCCCCHHHHHHHHHHHHHHHHhc
Q 020702 193 KCRKMSTEEKKNLGTALTRLSPEDLCKALEIVAENNPSFH-ATAQEVDLDMDAQSELTLWRLKVFVQESLKAA 264 (322)
Q Consensus 193 k~r~mt~eEK~~L~~~i~~L~~e~l~~vi~II~~~~P~~~-~~~~evElDid~L~~~TL~~L~~yV~~~L~~~ 264 (322)
.+++||++||++|+.+|+.||+++|.+|++||++++|.+. .+++|||||||.|++.|||+|+.||.+||+..
T Consensus 14 ~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 14 KCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp SCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999999999999999999986 68899999999999999999999999999876
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=134.27 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 020702 30 LLQFFVRQARSFITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 103 (322)
Q Consensus 30 ~lq~~c~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLI 103 (322)
.+|..+..|+..++.+. .+.+|+..++.. |+||. +.||+|.+|++||..+. |+++++|..||.+|
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~---Y~sld~f~~D~~lm 77 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNR---YRRLDLFQEHMFEV 77 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Confidence 57888899999999864 478899876654 78998 99999999999999999 99999999999999
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020702 104 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 135 (322)
Q Consensus 104 f~Na~~yN~~~s~v~~~A~~L~~~Fe~~~~~i 135 (322)
|.||..||.+||.||..|..|+..|.+.+.++
T Consensus 78 f~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL 109 (147)
T 3iu6_A 78 LERARRMNRTDSEIYEDAVELQQFFIKIRDEL 109 (147)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.61 E-value=6.1e-16 Score=136.12 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccCCCCchhhccCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 020702 28 ASLLQFFVRQARSFITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 107 (322)
Q Consensus 28 ~~~lq~~c~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~~~~Y~s~~ef~~DvrLIf~Na 107 (322)
...|+..+..||..|..+..++||+.+. ++.||||.||++||+.+. |.++.+|..||++||.||
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~y~-------------~k~PmDL~~i~kKl~~~~---Y~s~~eF~~Dv~lIf~n~ 136 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLRYR-------------QQQPLDLEGVKRKMDQGN---YTSVLEFSDDIVKIIQAA 136 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTCC-------------C--CCSHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhhh-------------hcCCccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHH
Confidence 3567788899999999999999997731 499999999999999999 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhCcCchhH
Q 020702 108 MKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 142 (322)
Q Consensus 108 ~~yN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~e 142 (322)
..||.+++.+..++..|...|++.+.+++|.....
T Consensus 137 ~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 137 INSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred hhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 99999999999999999999999999999987543
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=96.60 E-value=0.0028 Score=51.35 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q 020702 196 KMSTEEKKNLGTALTRLS-PEDLCKALEIVAENNPSFHATAQEVDLDMDAQSELTLWRLKVFVQ 258 (322)
Q Consensus 196 ~mt~eEK~~L~~~i~~L~-~e~l~~vi~II~~~~P~~~~~~~evElDid~L~~~TL~~L~~yV~ 258 (322)
+--.+|-+.|...|..|. .+.|.+|+++|.+. +.+...+..+.||+.+|+..|+++|+.|+.
T Consensus 58 ~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 58 KAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp CSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 344678889999999995 66799999999995 567789999999999999999999999975
Done!