BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020703
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KR0|A Chain A, A Proteasome Protein
Length = 411
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
A + L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP
Sbjct: 22 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 81
Query: 71 HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
+ F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 82 DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 135
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 163 GEAISDVTSSSGPVKLEDLQRIFSNI----GPADITEXXXXXXXXXXXXXXXXXMPLIET 218
G S S + P++L DLQ I + + GPA + P++
Sbjct: 253 GNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMA-----PILAN 307
Query: 219 LPLEQRLAPYLPEGQWTPXXX---XXXXQSPPFRQQVDSFTYVLKTGQID--LSQFGVDP 273
+++RL PYLP G+ P SP F+Q + F+ L +GQ+ + QFG+
Sbjct: 308 ADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPA 367
Query: 274 SKYKFTVLSFLEALEDSVSKLSESEESRQDDKN 306
+ +EA ++ ++ E+ D K+
Sbjct: 368 EAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKD 400
>pdb|2R2Y|A Chain A, Crystal Structure Of The Proteasomal Rpn13 Pru-Domain
Length = 153
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 24 KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDC 83
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN +N P
Sbjct: 84 EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 134
>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
Length = 109
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP + F
Sbjct: 2 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 61
Query: 76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121
++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN +N
Sbjct: 62 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLN 108
>pdb|2KQZ|A Chain A, Fragment Of Proteasome Protein
Length = 155
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Query: 167 SDVTSSSGPVKLEDLQRIFSNI----GPADITEXXXXXXXXXXXXXXXXXMPLIETLPLE 222
S S + P++L DLQ I + + GPA + P++ ++
Sbjct: 1 STAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMA-----PILANADVQ 55
Query: 223 QRLAPYLPEGQWTPXXX---XXXXQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPSKYK 277
+RL PYLP G+ P SP F+Q + F+ L +GQ+ + QFG+ +
Sbjct: 56 ERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVE 115
Query: 278 FTVLSFLEALEDSVSKLSESEESRQDDKN 306
+EA ++ ++ E+ D K+
Sbjct: 116 AANKGDVEAFAKAMQNNAKPEQKEGDTKD 144
>pdb|2L5V|A Chain A, Solution Structure Of The C-Terminal Domain Of Hrpn13
Length = 150
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 172 SSGPVKLEDLQRIFSNI----GPADITEXXXXXXXXXXXXXXXXXMPLIETLPLEQRLAP 227
S P++L DLQ I + + GPA + P++ +++RL P
Sbjct: 1 GSQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMA-----PILANADVQERLLP 55
Query: 228 YLPEGQWTPXXX---XXXXQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPSKYKFTVLS 282
YLP G+ P SP F+Q + F+ L +GQ+ + QFG+ +
Sbjct: 56 YLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKG 115
Query: 283 FLEALEDSVSKLSESEESRQDDKN 306
+EA ++ ++ E+ D K+
Sbjct: 116 DVEAFAKAMQNNAKPEQKEGDTKD 139
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 76 EKVNQASGRV--YILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEEL 132
++V+ GR+ Y+L N + + +FL ++ S L S NYFIN F N +L
Sbjct: 650 QRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,339,699
Number of Sequences: 62578
Number of extensions: 315623
Number of successful extensions: 473
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 7
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)