Query 020703
Match_columns 322
No_of_seqs 135 out of 261
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3037 Cell membrane glycopro 100.0 2.3E-71 5E-76 521.5 25.2 281 6-289 2-317 (330)
2 PF04683 Proteasom_Rpn13: Prot 100.0 5.1E-38 1.1E-42 249.1 11.0 83 22-104 1-85 (85)
3 PF13919 ASXH: Asx homology do 93.7 0.048 1.1E-06 47.2 2.5 64 200-265 32-104 (138)
4 KOG2857 Predicted MYND Zn-fing 44.1 28 0.00061 30.6 3.5 54 235-294 86-139 (157)
5 COG3128 PiuC Uncharacterized i 40.9 21 0.00046 32.9 2.3 35 62-106 149-184 (229)
6 PHA00438 hypothetical protein 39.7 22 0.00047 28.1 2.0 55 247-305 24-79 (81)
7 PTZ00283 serine/threonine prot 32.2 53 0.0012 33.6 4.0 36 83-121 455-490 (496)
8 TIGR01204 bioW 6-carboxyhexano 32.2 1.3E+02 0.0027 28.5 6.1 22 22-44 105-129 (232)
9 KOG2297 Predicted translation 31.3 49 0.0011 33.0 3.3 51 211-261 201-263 (412)
10 PF14974 DUF4511: Domain of un 30.8 86 0.0019 26.1 4.2 55 237-293 12-82 (105)
11 PF06880 DUF1262: Protein of u 29.3 2.9E+02 0.0062 23.0 7.0 56 35-91 3-82 (104)
12 PF09454 Vps23_core: Vps23 cor 28.1 1E+02 0.0022 23.3 3.9 32 248-293 24-55 (65)
13 PRK15195 fimbrial chaperone pr 28.0 4.9E+02 0.011 24.1 9.6 78 21-102 25-110 (229)
14 PRK15188 fimbrial chaperone pr 27.2 5.2E+02 0.011 24.1 9.9 78 22-102 27-112 (228)
15 PF08410 DUF1737: Domain of un 27.2 45 0.00098 24.5 1.8 18 107-124 12-29 (54)
16 PRK15233 putative fimbrial cha 26.3 5.6E+02 0.012 24.3 10.6 82 17-102 36-124 (246)
17 smart00569 L27 domain in recep 25.7 1.4E+02 0.0031 20.5 4.2 24 234-257 20-43 (55)
18 PF13897 GOLD_2: Golgi-dynamic 25.7 59 0.0013 28.3 2.5 20 81-100 108-132 (136)
19 PF14913 DPCD: DPCD protein fa 23.8 2.2E+02 0.0048 26.2 5.9 45 47-102 93-137 (194)
20 cd08809 CARD_CARD9 Caspase act 23.7 1.1E+02 0.0024 24.6 3.5 43 235-291 32-78 (86)
21 PRK15211 fimbrial chaperone pr 23.0 6.2E+02 0.013 23.6 10.0 77 21-101 22-106 (229)
22 TIGR03757 conj_TIGR03757 integ 22.5 96 0.0021 26.1 3.1 56 216-272 26-83 (113)
23 PF14008 Metallophos_C: Iron/z 22.5 1.4E+02 0.003 21.8 3.7 33 33-65 29-61 (62)
24 cd08806 CARD_CARD14_CARMA2 Cas 21.5 2.1E+02 0.0045 23.1 4.6 44 235-291 32-78 (86)
25 cd08811 CARD_IPS1 Caspase acti 21.5 2.6E+02 0.0056 22.4 5.2 55 222-290 20-75 (84)
26 PRK13284 flagellar assembly pr 21.4 1.1E+02 0.0023 26.8 3.3 41 62-107 14-56 (145)
27 PF12101 DUF3577: Protein of u 21.1 97 0.0021 27.0 2.9 51 8-59 73-123 (137)
28 PRK09918 putative fimbrial cha 20.9 6.7E+02 0.014 23.1 10.6 77 22-101 24-106 (230)
29 cd01253 PH_beta_spectrin Beta- 20.4 4.2E+02 0.0091 20.6 7.6 44 72-118 58-103 (104)
30 cd01230 PH_EFA6 EFA6 Pleckstri 20.4 5.1E+02 0.011 21.6 9.1 57 63-122 57-113 (117)
31 PRK13662 hypothetical protein; 20.2 3E+02 0.0066 24.8 6.1 41 46-88 17-57 (177)
No 1
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=100.00 E-value=2.3e-71 Score=521.54 Aligned_cols=281 Identities=42% Similarity=0.664 Sum_probs=219.9
Q ss_pred CcccCCCCcceEEEeceeeEecC--CceeecCCCcEEEEEeCCCCceEEEEeeCCCCCcccceeeeCCceEEEEecc-CC
Q 020703 6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS 82 (322)
Q Consensus 6 ~~~~~~~~~~lvefkAGk~~~~g--~~V~Pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~-~t 82 (322)
.+.++.++.+||+||||||.+.| ++|+||+|||+|||.+++|+|+||||++|.++.+|||+||||+|++|+||++ ||
T Consensus 2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t 81 (330)
T KOG3037|consen 2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT 81 (330)
T ss_pred ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence 35678899999999999999998 9999999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEEEcCCCceeEEeccCCCChhhHHHHHHHHHHhcCCccccccc-ccccCCccccc-----------------ccc
Q 020703 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEE-ELDASVPLQVS-----------------EDM 144 (322)
Q Consensus 83 gRVyvLkF~ss~~~~fFWmQe~~~~~D~~~~~kin~~i~~p~~~~~~~-~~~~~~~~~~~-----------------~~~ 144 (322)
||||+|||+++.++|||||||+++++|+++|+|||++||+|+...... ........+++ +.+
T Consensus 82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~ 161 (330)
T KOG3037|consen 82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL 161 (330)
T ss_pred CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence 999999999999999999999999999999999999999996532100 00000000000 000
Q ss_pred c--------cCccccCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHhhcCCCCCCCCCCCCCCccccCCccchhHhh
Q 020703 145 V--------EDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPADITEDPDGGLGLGDILKPDLIMPLI 216 (322)
Q Consensus 145 ~--------~~~~ss~~~~~~~~~~~~~~~~~~~s~~~~~~l~~lq~iL~~l~~~~~~~~~~~~~~L~dvLt~e~l~~lL 216 (322)
. ....++.+++...+++.+. .+...+++.+...++.++.++.+.++-.. ....++|+.||++++|.++|
T Consensus 162 ~~e~l~~~~~s~~~s~~~~~~~~t~es~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--g~~~vdLa~vL~~e~v~~vl 238 (330)
T KOG3037|consen 162 TVEQLNSLAESNESSLPGNSVPQTPESS-VSGPESPSEPNKEEDVSNSLSTLSPQIGF--GASTVDLATVLKPEAVAPVL 238 (330)
T ss_pred hHhhhcccccCccccccccccccCcccc-ccCCCCCCccccchhhcccccCCchhccC--CccceehhhhcChHHHHHHh
Confidence 0 0000011111111111110 01112234455667777878777642111 12258999999999999999
Q ss_pred cCchHHHhhcCCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHcCccc--ccccCCCccc----ccccHHHHHHHHHH
Q 020703 217 ETLPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPSK----YKFTVLSFLEALED 289 (322)
Q Consensus 217 ~~~~~~~~L~~~LP~~~~t~e~L~~~lrSPQFqQAl~~ls~AL~sG~l~--l~qfGl~~~~----~~~~VeaFl~al~~ 289 (322)
+++.++++|++|||+++...++|.++|+||||+|||++|++||++|+++ +.||||+.++ ..++|++|+++|++
T Consensus 239 ~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL~sgql~~~i~qfgl~~~~~~sa~~g~v~~F~~aL~~ 317 (330)
T KOG3037|consen 239 ANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQALQSGQLGPVICQFGLDLEAVASANEGDVEAFLKALER 317 (330)
T ss_pred hCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHHhcccccchhhhcCCchhhhcccccccHHHHHHHHHh
Confidence 9999999999999999988899999999999999999999999999999 9999999543 45699999999998
No 2
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=100.00 E-value=5.1e-38 Score=249.13 Aligned_cols=83 Identities=55% Similarity=1.058 Sum_probs=71.7
Q ss_pred eeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC-CCcccceeeeCCceEEEEecc-CCCeEEEEEEcCCCceeEE
Q 020703 22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL 99 (322)
Q Consensus 22 Gk~~~~g~~V~Pd~rKG~l~l~~~~d~l~hf~W~~R~~-~~~edd~ii~P~d~~f~~V~~-~tgRVyvLkF~ss~~~~fF 99 (322)
|||+++|++|+|++|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|+++|||
T Consensus 1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF 80 (85)
T PF04683_consen 1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF 80 (85)
T ss_dssp EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence 99999999999999999999999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred eccCC
Q 020703 100 WMQEP 104 (322)
Q Consensus 100 WmQe~ 104 (322)
|||||
T Consensus 81 WmQe~ 85 (85)
T PF04683_consen 81 WMQEP 85 (85)
T ss_dssp EE-SS
T ss_pred EecCC
Confidence 99996
No 3
>PF13919 ASXH: Asx homology domain
Probab=93.68 E-value=0.048 Score=47.18 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=49.7
Q ss_pred CCCccccCCccchhHhhcCchHHHhhcCCCCCCCC------CHHHHH---HHhcChhHHHHHHHHHHHHHcCccc
Q 020703 200 GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQW------TPEELL---ELLQSPPFRQQVDSFTYVLKTGQID 265 (322)
Q Consensus 200 ~~~L~dvLt~e~l~~lL~~~~~~~~L~~~LP~~~~------t~e~L~---~~lrSPQFqQAl~~ls~AL~sG~l~ 265 (322)
.++|.+|+++++. .+| .++.+.+|+.+||+-.. +...|. ..++|++|+.++..|..-|..|.+.
T Consensus 32 ~~dLr~L~N~~tw-~~L-~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~ 104 (138)
T PF13919_consen 32 NADLRALLNPETW-SCL-PEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFD 104 (138)
T ss_pred ccCHHHHhCHHHH-hcC-CHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCC
Confidence 4677777887777 444 34468899999998632 334455 7899999999999999999999875
No 4
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=44.07 E-value=28 Score=30.58 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=41.1
Q ss_pred CHHHHHHHhcChhHHHHHHHHHHHHHcCcccccccCCCcccccccHHHHHHHHHHhhccc
Q 020703 235 TPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKL 294 (322)
Q Consensus 235 t~e~L~~~lrSPQFqQAl~~ls~AL~sG~l~l~qfGl~~~~~~~~VeaFl~al~~~~~k~ 294 (322)
+...|+.+|..|-+|+-+.+++.++.--+.-+...+.+ -...|+++|...+.+.
T Consensus 86 ssseLrsll~dp~Lr~Li~sid~~~n~~kel~aamqee------lfvefadailq~ve~s 139 (157)
T KOG2857|consen 86 SSSELRSLLEDPHLRNLIESIDELLNIMKELVAAMQEE------LFVEFADAILQQVEPS 139 (157)
T ss_pred chHHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHhcch------HHHHHHHHHHHhhcCC
Confidence 45789999999999999999998887543333444333 4678999999988875
No 5
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=40.93 E-value=21 Score=32.94 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=26.3
Q ss_pred cccceeeeCCceEEEEecc-CCCeEEEEEEcCCCceeEEeccCCCC
Q 020703 62 VEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (322)
Q Consensus 62 ~edd~ii~P~d~~f~~V~~-~tgRVyvLkF~ss~~~~fFWmQe~~~ 106 (322)
+--|+|++|.. +..+|.+ |-|+=|. .|||.|..--
T Consensus 149 PAGdLVlypSt-SlH~VtPVTRg~R~a---------sffW~qslir 184 (229)
T COG3128 149 PAGDLVLYPST-SLHEVTPVTRGERFA---------SFFWIQSLIR 184 (229)
T ss_pred cCCCEEEcccc-cceeccccccCceEE---------EeeehHHHhh
Confidence 44699999985 4888988 7776433 6999997654
No 6
>PHA00438 hypothetical protein
Probab=39.74 E-value=22 Score=28.08 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHcCccc-ccccCCCcccccccHHHHHHHHHHhhccccccccchhhhh
Q 020703 247 PFRQQVDSFTYVLKTGQID-LSQFGVDPSKYKFTVLSFLEALEDSVSKLSESEESRQDDK 305 (322)
Q Consensus 247 QFqQAl~~ls~AL~sG~l~-l~qfGl~~~~~~~~VeaFl~al~~~~~k~~~~e~~~~~~~ 305 (322)
+|-|..=.++.+.++|.+. |.+=|...+ -|.+|+.+++-.+.--..-|++.++.|
T Consensus 24 eyLqvrfNasYl~~sG~i~~lR~~G~SE~----~IaGfl~Gl~yAs~~ldeme~r~~ql~ 79 (81)
T PHA00438 24 EYLQVRFNASYLEQSGEIRLLRQAGYSEA----FIAGFLAGLQYASRTLDEMEARREQLR 79 (81)
T ss_pred HHHHHHHhHHHHHHhhhHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666788999999999 899888865 588999998754432222334444433
No 7
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=32.24 E-value=53 Score=33.57 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCceeEEeccCCCChhhHHHHHHHHHHhc
Q 020703 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (322)
Q Consensus 83 gRVyvLkF~ss~~~~fFWmQe~~~~~D~~~~~kin~~i~ 121 (322)
--||+|.|.. +++ ||.|..+.+.-+.|+.+|++.|.
T Consensus 455 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKT-GRR--LLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecC-CcE--EEEecCCchhHHHHHHHHHHhcC
Confidence 4799999974 444 79999998877899999999985
No 8
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=32.17 E-value=1.3e+02 Score=28.53 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=16.2
Q ss_pred eeeEec---CCceeecCCCcEEEEEe
Q 020703 22 GKMTFD---GKKVVPDSRKGLVRIAR 44 (322)
Q Consensus 22 Gk~~~~---g~~V~Pd~rKG~l~l~~ 44 (322)
|=|.++ |.++.||..||+ ++..
T Consensus 105 GA~llda~tG~RLe~d~~RGV-Rvs~ 129 (232)
T TIGR01204 105 GAVLMDIETGERLDEDKEKGV-RVSR 129 (232)
T ss_pred ceEEEecCCCccccCCCCcce-EEEe
Confidence 556666 899999999995 4443
No 9
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.29 E-value=49 Score=32.98 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=40.7
Q ss_pred chhHhhcCchHHHhhcCCCCCCCCCH------------HHHHHHhcChhHHHHHHHHHHHHHc
Q 020703 211 LIMPLIETLPLEQRLAPYLPEGQWTP------------EELLELLQSPPFRQQVDSFTYVLKT 261 (322)
Q Consensus 211 ~l~~lL~~~~~~~~L~~~LP~~~~t~------------e~L~~~lrSPQFqQAl~~ls~AL~s 261 (322)
.|+.+|+.-.+-.+|+.++||..++. .+|.+.+|.-||.-+..-+..+|++
T Consensus 201 ~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~ 263 (412)
T KOG2297|consen 201 DLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQE 263 (412)
T ss_pred HHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666789999999986554 3477888999999999999999997
No 10
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=30.79 E-value=86 Score=26.12 Aligned_cols=55 Identities=15% Similarity=0.327 Sum_probs=36.4
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHcC---------------ccc-ccccCCCcccccccHHHHHHHHHHhhcc
Q 020703 237 EELLELLQSPPFRQQVDSFTYVLKTG---------------QID-LSQFGVDPSKYKFTVLSFLEALEDSVSK 293 (322)
Q Consensus 237 e~L~~~lrSPQFqQAl~~ls~AL~sG---------------~l~-l~qfGl~~~~~~~~VeaFl~al~~~~~k 293 (322)
.+|.+.+++|+..+.++---..-... +.. ++.+|++.+. .||..|++.|++..+.
T Consensus 12 ~eil~a~~~peN~~kl~eAk~~agndm~k~mq~v~Pva~qiq~~VIk~yGF~~~~--eG~~~f~~~i~~~e~~ 82 (105)
T PF14974_consen 12 TEILDAFNQPENAAKLEEAKANAGNDMLKMMQFVFPVATQIQMEVIKKYGFPESR--EGVMQFAQLIRELEKD 82 (105)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHHHHcc
Confidence 46778888888777654322221110 222 6788998764 4999999999987654
No 11
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.
Probab=29.30 E-value=2.9e+02 Score=23.02 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCCcEEEEEeCCCCceE--EEEeeCCCCCc-------------------ccceeeeCCceEEEEecc---CCCeEEEEEE
Q 020703 35 SRKGLVRIARGEHGLIH--FQWLDRTRNVV-------------------EDDQIVFPHEAVFEKVNQ---ASGRVYILKF 90 (322)
Q Consensus 35 ~rKG~l~l~~~~d~l~h--f~W~~R~~~~~-------------------edd~ii~P~d~~f~~V~~---~tgRVyvLkF 90 (322)
|--|+|.|. +++.... .||.......+ .++-....+.+-|.+|.- ..+|-|+++=
T Consensus 3 PnSG~LVIq-Dee~~~~~t~CfG~c~~~~v~~LPFPQN~~Ltv~~~~~~~~~~~t~~d~V~FIPVl~QPLSSnrYYvi~~ 81 (104)
T PF06880_consen 3 PNSGYLVIQ-DEEAETTETCCFGLCKDTRVRGLPFPQNKNLTVRYSSGHGENTTTYSDPVVFIPVLNQPLSSNRYYVIRR 81 (104)
T ss_pred CCceEEEEE-ccccCccccEEeeEcCCCccccCCCCCCCEEEEEEccCCCccceeecccEEEEEcCCCcCcCCcEEEEEe
Confidence 346888776 5666666 88866432211 122233357888999963 7899999986
Q ss_pred c
Q 020703 91 N 91 (322)
Q Consensus 91 ~ 91 (322)
+
T Consensus 82 ~ 82 (104)
T PF06880_consen 82 K 82 (104)
T ss_pred c
Confidence 3
No 12
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.09 E-value=1e+02 Score=23.28 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCcccccccCCCcccccccHHHHHHHHHHhhcc
Q 020703 248 FRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSK 293 (322)
Q Consensus 248 FqQAl~~ls~AL~sG~l~l~qfGl~~~~~~~~VeaFl~al~~~~~k 293 (322)
...++-.|+.||+.|.+ ++..|++.+++.+++
T Consensus 24 ieDtiy~L~~al~~g~I--------------~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 24 IEDTIYYLDRALQRGSI--------------DLDTFLKQVRSLARE 55 (65)
T ss_dssp HHHHHHHHHHHHHTTSS---------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHH
Confidence 34567889999998875 688999998877654
No 13
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=27.99 E-value=4.9e+02 Score=24.13 Aligned_cols=78 Identities=21% Similarity=0.417 Sum_probs=44.2
Q ss_pred ceeeEecCCce-eecCCC-cEEEEEeCC-C-CceEEEEeeCCCCCcccceeeeCCceEEEEecc-CCCeEEEEEEcC---
Q 020703 21 AGKMTFDGKKV-VPDSRK-GLVRIARGE-H-GLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNT--- 92 (322)
Q Consensus 21 AGk~~~~g~~V-~Pd~rK-G~l~l~~~~-d-~l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~-~tgRVyvLkF~s--- 92 (322)
|| +.+++++| -+...| -.|.|.-.+ + -.+-..|.+...+....+||+.|- +-|++. ....|=+++-..
T Consensus 25 Ag-i~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPP---lfrl~p~~~q~lRIi~~~~~LP 100 (229)
T PRK15195 25 GG-IALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPP---LFVSEPKSENTLRIIYAGPPLA 100 (229)
T ss_pred ee-EEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 56 55777654 443333 344554433 3 255566997554444468999998 778887 333332333221
Q ss_pred CCceeEEecc
Q 020703 93 DDRKFFLWMQ 102 (322)
Q Consensus 93 s~~~~fFWmQ 102 (322)
.++-..||+=
T Consensus 101 ~DrESlf~Ln 110 (229)
T PRK15195 101 ADRESLFWMN 110 (229)
T ss_pred CCeeEEEEEE
Confidence 2467889984
No 14
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=27.18 E-value=5.2e+02 Score=24.12 Aligned_cols=78 Identities=14% Similarity=0.336 Sum_probs=46.8
Q ss_pred eeeEecCCce-eecCCC-cEEEEEeCC-CC-ceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEcC----C
Q 020703 22 GKMTFDGKKV-VPDSRK-GLVRIARGE-HG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT----D 93 (322)
Q Consensus 22 Gk~~~~g~~V-~Pd~rK-G~l~l~~~~-d~-l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~~tgRVyvLkF~s----s 93 (322)
+-+.+++++| -+...| ..|.|.-.+ +. .+.-.|.+...+....+||+.|- +.|++...+++.-+.+.. .
T Consensus 27 Agi~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPP---lfrl~~~~~~~lRI~~~~~~lP~ 103 (228)
T PRK15188 27 GGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP---LFVIQPKKENILRIMYVGPSLPT 103 (228)
T ss_pred ceEEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCCC
Confidence 3366777654 444433 455554443 32 55667997555444467999998 778887444444444432 3
Q ss_pred CceeEEecc
Q 020703 94 DRKFFLWMQ 102 (322)
Q Consensus 94 ~~~~fFWmQ 102 (322)
+|-..||+=
T Consensus 104 DRESlf~ln 112 (228)
T PRK15188 104 DRESVFYLN 112 (228)
T ss_pred CceEEEEEE
Confidence 577889984
No 15
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=27.15 E-value=45 Score=24.47 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHhcCCc
Q 020703 107 EEDSQLCNSVNYFINRPL 124 (322)
Q Consensus 107 ~~D~~~~~kin~~i~~p~ 124 (322)
..|.+||+||++.|+..=
T Consensus 12 ~d~~~fc~rVt~aL~~GW 29 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEGW 29 (54)
T ss_pred CChHHHHHHHHHHHHcCC
Confidence 458899999999999843
No 16
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=26.31 E-value=5.6e+02 Score=24.25 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=47.9
Q ss_pred EEEeceeeEecCCce-eecCCCc-EEEEEeCCCC-ceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEcC-
Q 020703 17 LEFRAGKMTFDGKKV-VPDSRKG-LVRIARGEHG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT- 92 (322)
Q Consensus 17 vefkAGk~~~~g~~V-~Pd~rKG-~l~l~~~~d~-l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~~tgRVyvLkF~s- 92 (322)
...-|| +.+++++| .+...|+ .|.|.-.++. .+-=.|.+...+.....||+.|- +-|++...+.+..+.+..
T Consensus 36 ~~a~Ag-i~l~~TRvIy~~~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPP---LfRLep~~~~~lRIi~~~~ 111 (246)
T PRK15233 36 TQKYYG-LRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPP---ILKVESNARTRLKVIPTSN 111 (246)
T ss_pred hheeee-EEeCceEEEEeCCCcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCC---eEEECCCCceEEEEEECCC
Confidence 344555 66888765 4444443 4444433332 33345887665444567999998 778887444444444433
Q ss_pred ---CCceeEEecc
Q 020703 93 ---DDRKFFLWMQ 102 (322)
Q Consensus 93 ---s~~~~fFWmQ 102 (322)
.+|-..||+=
T Consensus 112 ~LP~DRESlfwln 124 (246)
T PRK15233 112 LFNKNEESLYWLC 124 (246)
T ss_pred CCCcCceEEEEEE
Confidence 2677899985
No 17
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=25.73 E-value=1.4e+02 Score=20.50 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=19.9
Q ss_pred CCHHHHHHHhcChhHHHHHHHHHH
Q 020703 234 WTPEELLELLQSPPFRQQVDSFTY 257 (322)
Q Consensus 234 ~t~e~L~~~lrSPQFqQAl~~ls~ 257 (322)
...+.|+.++++|-|+..+..++.
T Consensus 20 ~~~~~L~~ll~~~~~~all~~hd~ 43 (55)
T smart00569 20 EDLQELRRLLQSPHLQALLKIHDK 43 (55)
T ss_pred ccHHHHHHHHcCHHHHHHHHHHHH
Confidence 356789999999999998887754
No 18
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=25.73 E-value=59 Score=28.26 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=13.9
Q ss_pred CCCeEEEEEEcCC-----CceeEEe
Q 020703 81 ASGRVYILKFNTD-----DRKFFLW 100 (322)
Q Consensus 81 ~tgRVyvLkF~ss-----~~~~fFW 100 (322)
+.--||+|||.+| +++.+|.
T Consensus 108 ~~~GvYvLkFDNSYS~~rsK~l~Y~ 132 (136)
T PF13897_consen 108 PGPGVYVLKFDNSYSWFRSKKLYYR 132 (136)
T ss_pred CCCeEEEEEeeCcceeEEeeEEEEE
Confidence 4456999999764 4556664
No 19
>PF14913 DPCD: DPCD protein family
Probab=23.83 E-value=2.2e+02 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=31.2
Q ss_pred CCceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEcCCCceeEEecc
Q 020703 47 HGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQ 102 (322)
Q Consensus 47 d~l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~~tgRVyvLkF~ss~~~~fFWmQ 102 (322)
|.-..|+|+=|.=. .|-|+....|.. ..|..+++ .++.+||==+.
T Consensus 93 dTk~~fqWRIRNLP--------YP~dvYsVtvd~-~~r~ivvR--TtNKKYyKk~~ 137 (194)
T PF14913_consen 93 DTKTSFQWRIRNLP--------YPKDVYSVTVDE-DERCIVVR--TTNKKYYKKFS 137 (194)
T ss_pred cCccceEEEEccCC--------CCccceEEEEcC-CCcEEEEE--CcCccceeEec
Confidence 45566999888754 366666667776 55788888 67888874443
No 20
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=23.71 E-value=1.1e+02 Score=24.61 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=29.0
Q ss_pred CHHHHHHHhcChhH---HHHHHHHHHHHHc-CcccccccCCCcccccccHHHHHHHHHHhh
Q 020703 235 TPEELLELLQSPPF---RQQVDSFTYVLKT-GQIDLSQFGVDPSKYKFTVLSFLEALEDSV 291 (322)
Q Consensus 235 t~e~L~~~lrSPQF---qQAl~~ls~AL~s-G~l~l~qfGl~~~~~~~~VeaFl~al~~~~ 291 (322)
+..++.+++++||| ++-+..|=--|++ |. -+.++|++.|+...
T Consensus 32 ~~~deEeI~~~~~~~~~~~kvg~LLDIL~~rG~--------------~~f~aFLeSLE~~y 78 (86)
T cd08809 32 NSDDEEQVLNDPSLVIRKRKVGVLLDILQRTGL--------------KGYEAFLESLELYY 78 (86)
T ss_pred ChhhHHHHHcCcccchHHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHHHH
Confidence 56788899999773 4555555445554 33 27899999998543
No 21
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=23.05 E-value=6.2e+02 Score=23.57 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=42.6
Q ss_pred ceeeEecCCcee-ecCCC-cEEEEEeCCCCceEE-EEeeCCCCC-cccceeeeCCceEEEEeccCCCeEEEEEEcC----
Q 020703 21 AGKMTFDGKKVV-PDSRK-GLVRIARGEHGLIHF-QWLDRTRNV-VEDDQIVFPHEAVFEKVNQASGRVYILKFNT---- 92 (322)
Q Consensus 21 AGk~~~~g~~V~-Pd~rK-G~l~l~~~~d~l~hf-~W~~R~~~~-~edd~ii~P~d~~f~~V~~~tgRVyvLkF~s---- 92 (322)
|| +.+++++|. +...| ..|.|.-.++.-+-+ .|.+..... ....||+.|- +.|++...+.+..+.+..
T Consensus 22 A~-v~l~~TRvIy~~~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPP---lfrl~p~~~q~lRI~~~~~~LP 97 (229)
T PRK15211 22 AA-FVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPP---FFKVRPKEKQIIRIMKTDSALP 97 (229)
T ss_pred EE-EEECceEEEEcCCCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 66 678887654 43333 344454433432333 488765432 1246999988 778877333333333332
Q ss_pred CCceeEEec
Q 020703 93 DDRKFFLWM 101 (322)
Q Consensus 93 s~~~~fFWm 101 (322)
.+|-..||+
T Consensus 98 ~DRESlf~l 106 (229)
T PRK15211 98 KDRESLFWL 106 (229)
T ss_pred CCceEEEEE
Confidence 267789997
No 22
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.55 E-value=96 Score=26.13 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=35.4
Q ss_pred hcCch-HHHhhcCCCCCCCC-CHHHHHHHhcChhHHHHHHHHHHHHHcCcccccccCCC
Q 020703 216 IETLP-LEQRLAPYLPEGQW-TPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVD 272 (322)
Q Consensus 216 L~~~~-~~~~L~~~LP~~~~-t~e~L~~~lrSPQFqQAl~~ls~AL~sG~l~l~qfGl~ 272 (322)
|+.++ +..+|...||.+.. -....++.++||++++--..|..|-| |....-++||.
T Consensus 26 LD~~erle~~ls~~Lpadp~qA~~~~~~~l~sp~~~~~q~~l~~Ayq-gv~~Aw~lGi~ 83 (113)
T TIGR03757 26 LDAPERLEAQLSAGLPADPQQAAAQARQRLQSPDWARLQRRLAQAYQ-GVADAWQLGVT 83 (113)
T ss_pred eccHHHHHHHHhccCCCCHHHHHHHHHHHHcCccHHHHHHHHHHHHH-HHHHHHHcCCc
Confidence 44444 67789999998743 23457789999998665555555543 22224566665
No 23
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=22.50 E-value=1.4e+02 Score=21.76 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred ecCCCcEEEEEeCCCCceEEEEeeCCCCCcccc
Q 020703 33 PDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDD 65 (322)
Q Consensus 33 Pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~edd 65 (322)
-+..-|+.+|.--....++|+|..-.++.+-|+
T Consensus 29 r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~ 61 (62)
T PF14008_consen 29 RDSEYGYGRLTVANATHLHWEFIRSDDGSVLDE 61 (62)
T ss_dssp EE---EEEEEEE-SSSEEEEEEEETTS-T-CEE
T ss_pred eccccCEEEEEEEcCCeEEEEEEECCCCcEecC
Confidence 446789988876577899999988877766554
No 24
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=21.52 E-value=2.1e+02 Score=23.09 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=32.0
Q ss_pred CHHHHHHHhcChhHHHHHHH---HHHHHHcCcccccccCCCcccccccHHHHHHHHHHhh
Q 020703 235 TPEELLELLQSPPFRQQVDS---FTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSV 291 (322)
Q Consensus 235 t~e~L~~~lrSPQFqQAl~~---ls~AL~sG~l~l~qfGl~~~~~~~~VeaFl~al~~~~ 291 (322)
+..+..+++++|.|...... |=--|++-+ ..+..+|+++|+...
T Consensus 32 ~~~deeeIls~~t~~~r~~k~g~LLDIL~trG-------------~~g~~aFLeSLe~~y 78 (86)
T cd08806 32 DQLDEEEVLHSPRLTNRAMRVGHLLDLLKTRG-------------KNGAIAFLESLKFHN 78 (86)
T ss_pred ChhhHHHHHccchHHHHHHHHHHHHHHHHhcC-------------chHHHHHHHHHHHHC
Confidence 66789999999999987777 444444422 128999999998543
No 25
>cd08811 CARD_IPS1 Caspase activation and recruitment domain (CARD) found in IPS-1. Caspase activation and recruitment domain (CARD) found in IPS-1 (Interferon beta promoter stimulator protein 1), also known as CARDIF, VISA or MAVS. IPS-1 is an adaptor protein that plays an important role in interferon induction in response to viral infection. It is crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. The CARD of IPS-1 associates with the CARDs of two RNA helicases, RIG-I and MDA5, which bind viral DNA in the cytoplasm during the initial stage of intracellular antiviral response, leading to the induction of type I interferons. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homo
Probab=21.48 E-value=2.6e+02 Score=22.44 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=39.4
Q ss_pred HHhhcCCCCC-CCCCHHHHHHHhcChhHHHHHHHHHHHHHcCcccccccCCCcccccccHHHHHHHHHHh
Q 020703 222 EQRLAPYLPE-GQWTPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDS 290 (322)
Q Consensus 222 ~~~L~~~LP~-~~~t~e~L~~~lrSPQFqQAl~~ls~AL~sG~l~l~qfGl~~~~~~~~VeaFl~al~~~ 290 (322)
+-.++||||= ...+++.|+.--..-=++-|+..|=.-||-+ .+-++.|++||+..
T Consensus 20 v~eiLP~LpCLT~~Dqe~i~a~~~~~Gn~~a~~~L~d~LrrR--------------~~W~~~fi~ALr~~ 75 (84)
T cd08811 20 VVEILPYLPCLTASDQEEIRAKQDHSGNRATVQKLFDHLRRR--------------PNWVECLIRALRRC 75 (84)
T ss_pred HHHhcCccccCchhhHHHHcchhhhhhHHHHHHHHHHHHhcC--------------CCcHHHHHHHHHHc
Confidence 4578999994 3557777877666667777777776666632 23699999999863
No 26
>PRK13284 flagellar assembly protein FliW; Provisional
Probab=21.44 E-value=1.1e+02 Score=26.76 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=23.7
Q ss_pred cccceeeeCCce-EEEEeccCCCeEEEEEEcCC-CceeEEeccCCCCh
Q 020703 62 VEDDQIVFPHEA-VFEKVNQASGRVYILKFNTD-DRKFFLWMQEPKAE 107 (322)
Q Consensus 62 ~edd~ii~P~d~-~f~~V~~~tgRVyvLkF~ss-~~~~fFWmQe~~~~ 107 (322)
.|+++|.||.-. =|. .=|=|+|-+... ...-|||||+-+..
T Consensus 14 ~e~~ii~Fp~Gi~GFe-----~~k~F~L~~~~~~~~~~f~~LQS~dd~ 56 (145)
T PRK13284 14 DPEKVITFPAGLPGFE-----DCKRFKLFHEEGPPEPTVFWLQSLDDP 56 (145)
T ss_pred CccceEECCCCCCCCC-----cccEEEEEecccCCCCCEEEEEeCCCC
Confidence 356777776532 133 334466664322 13679999988763
No 27
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=21.09 E-value=97 Score=26.99 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=39.0
Q ss_pred ccCCCCcceEEEeceeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC
Q 020703 8 ASPAMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR 59 (322)
Q Consensus 8 ~~~~~~~~lvefkAGk~~~~g~~V~Pd~rKG~l~l~~~~d~l~hf~W~~R~~ 59 (322)
+....+++||.||.|-+..+--+.+--.++|...+.. ...|+++.|..-+.
T Consensus 73 av~~~~KVli~FrlgDl~~d~f~~~~G~~~Ge~g~sL-KgRLl~i~~iKVdg 123 (137)
T PF12101_consen 73 AVDEDKKVLIGFRLGDLWADTFTYKKGERAGEPGASL-KGRLLKIKWIKVDG 123 (137)
T ss_pred hcccCCcEEEEEEecCCceeeEEeccCCcCCccceee-EEEEEEEEEEEECC
Confidence 4567889999999999988876666677888776654 35789999965443
No 28
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.92 E-value=6.7e+02 Score=23.15 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=42.6
Q ss_pred eeeEecCCceeecCCC--cEEEEEeCCC-CceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEEEEc---CCCc
Q 020703 22 GKMTFDGKKVVPDSRK--GLVRIARGEH-GLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFN---TDDR 95 (322)
Q Consensus 22 Gk~~~~g~~V~Pd~rK--G~l~l~~~~d-~l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~~tgRVyvLkF~---ss~~ 95 (322)
+-+.+.+++|.-+..+ +.|.|.-.++ -.+--.|.+........+||+.|- +.|++....++.-+.+. ..++
T Consensus 24 a~v~l~~tRvi~~~~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPP---l~rl~pg~~q~vRii~~~~lp~dr 100 (230)
T PRK09918 24 AGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPP---VARVEPGQSQQVRFILKSGSPLNT 100 (230)
T ss_pred eeEEEccEEEEEECCCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCC---eEEECCCCceEEEEEECCCCCCCe
Confidence 4466778766555433 4555544333 344456987654334468999998 66777622222222222 2355
Q ss_pred eeEEec
Q 020703 96 KFFLWM 101 (322)
Q Consensus 96 ~~fFWm 101 (322)
-..||+
T Consensus 101 Es~f~l 106 (230)
T PRK09918 101 EHLLRV 106 (230)
T ss_pred eEEEEE
Confidence 677776
No 29
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.41 E-value=4.2e+02 Score=20.62 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=27.3
Q ss_pred ceEEEEecc--CCCeEEEEEEcCCCceeEEeccCCCChhhHHHHHHHHH
Q 020703 72 EAVFEKVNQ--ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNY 118 (322)
Q Consensus 72 d~~f~~V~~--~tgRVyvLkF~ss~~~~fFWmQe~~~~~D~~~~~kin~ 118 (322)
.++...++. +.-.||.|+.. ++ ..||+|-.+.+.=..|+..|+.
T Consensus 58 ~~~i~~~~~~~k~~~~F~l~~~-~~--~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 58 GAQCEVASDYTKKKHVFRLRLP-DG--AEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCEEEecCCcccCceEEEEEec-CC--CEEEEECCCHHHHHHHHHHHhc
Confidence 455555543 23356666643 22 4579998888777788877763
No 30
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.40 E-value=5.1e+02 Score=21.58 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=31.7
Q ss_pred ccceeeeCCceEEEEeccCCCeEEEEEEcCCCceeEEeccCCCChhhHHHHHHHHHHhcC
Q 020703 63 EDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINR 122 (322)
Q Consensus 63 edd~ii~P~d~~f~~V~~~tgRVyvLkF~ss~~~~fFWmQe~~~~~D~~~~~kin~~i~~ 122 (322)
+.-+-|-+.-++......+--.||.|+-. +++.+ =+|-++.+.=..|+.+||....-
T Consensus 57 ~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~-~g~~~--lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 57 KNAISIHHALATRASDYSKKPHVFRLRTA-DWREF--LFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred cceEEeccceeEeeccccCCCcEEEEEcC-CCCEE--EEECCCHHHHHHHHHHHHHHHHh
Confidence 33444433322333333344456665542 23444 35888877777999999987643
No 31
>PRK13662 hypothetical protein; Provisional
Probab=20.21 E-value=3e+02 Score=24.83 Aligned_cols=41 Identities=15% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCCceEEEEeeCCCCCcccceeeeCCceEEEEeccCCCeEEEE
Q 020703 46 EHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYIL 88 (322)
Q Consensus 46 ~d~l~hf~W~~R~~~~~edd~ii~P~d~~f~~V~~~tgRVyvL 88 (322)
=||-+|-+|..+.-....+.++|.-.+-+|.. ..+||.++-
T Consensus 17 ~dG~lHr~w~~~~v~~~~~~~~v~~~~~t~v~--e~dG~~Wv~ 57 (177)
T PRK13662 17 HDGSLHRTWRDTMVLKTTENAVIGGNDHTLVT--ESDGRRWVT 57 (177)
T ss_pred eCCeEEEEEEcCEEEEccCCeEEEECCcEEEE--eCCCceEEe
Confidence 58899999988876555556666544444443 346888876
Done!