Your job contains 1 sequence.
>020704
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS
YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD
LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS
KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN
EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTED
PTNNSEVMSSGGHLVSEKGESE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020704
(322 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043560 - symbol:PAPS2 "poly(A) polymerase 2" ... 927 4.3e-93 1
TAIR|locus:2134113 - symbol:nPAP "nuclear poly(a) polymer... 922 1.5e-92 1
TAIR|locus:2030943 - symbol:PAPS1 "poly(A) polymerase 1" ... 649 1.2e-63 1
DICTYBASE|DDB_G0288259 - symbol:papA "poly(A) polymerase"... 376 9.5e-34 1
ZFIN|ZDB-GENE-040426-1256 - symbol:papolg "poly(A) polyme... 366 9.0e-33 1
UNIPROTKB|G3V2A0 - symbol:PAPOLA "Poly(A) polymerase alph... 348 9.8e-32 1
UNIPROTKB|Q3T0A2 - symbol:PAPOLA "Poly(A) polymerase alph... 352 2.4e-31 1
UNIPROTKB|G3MYA2 - symbol:PAPOLA "Poly(A) polymerase alph... 352 2.7e-31 1
UNIPROTKB|P25500 - symbol:PAPOLA "Poly(A) polymerase alph... 352 2.9e-31 1
UNIPROTKB|G3XAH6 - symbol:PAPOLA "Poly(A) polymerase alph... 348 7.4e-31 1
MGI|MGI:109301 - symbol:Papola "poly (A) polymerase alpha... 348 7.8e-31 1
UNIPROTKB|Q9NRJ5 - symbol:PAPOLB "Poly(A) polymerase beta... 346 7.9e-31 1
UNIPROTKB|F1PDS0 - symbol:PAPOLA "Uncharacterized protein... 348 8.0e-31 1
UNIPROTKB|P51003 - symbol:PAPOLA "Poly(A) polymerase alph... 348 8.0e-31 1
MGI|MGI:1932115 - symbol:Papolb "poly (A) polymerase beta... 344 1.4e-30 1
UNIPROTKB|F1SAQ7 - symbol:PAPOLA "Uncharacterized protein... 345 1.4e-30 1
UNIPROTKB|I3L6F0 - symbol:PAPOLA "Uncharacterized protein... 345 1.6e-30 1
UNIPROTKB|F1NDP1 - symbol:PAPOLA "Uncharacterized protein... 342 2.0e-30 1
RGD|1310946 - symbol:Papolb "poly (A) polymerase beta (te... 342 2.3e-30 1
UNIPROTKB|F1NKG9 - symbol:PAPOLA "Uncharacterized protein... 342 3.5e-30 1
UNIPROTKB|Q9BWT3 - symbol:PAPOLG "Poly(A) polymerase gamm... 340 5.7e-30 1
UNIPROTKB|A5D7N5 - symbol:PAPOLG "Uncharacterized protein... 340 5.8e-30 1
UNIPROTKB|F1SQL7 - symbol:PAPOLG "Uncharacterized protein... 340 5.8e-30 1
UNIPROTKB|J9NS30 - symbol:PAPOLG "Uncharacterized protein... 340 7.3e-30 1
UNIPROTKB|I3LRR6 - symbol:PAPOLB "Uncharacterized protein... 337 7.7e-30 1
MGI|MGI:2442119 - symbol:Papolg "poly(A) polymerase gamma... 338 9.4e-30 1
RGD|1310337 - symbol:Papolg "poly(A) polymerase gamma" sp... 338 9.4e-30 1
ZFIN|ZDB-GENE-030131-3507 - symbol:papola "poly(A) polyme... 333 3.1e-29 1
POMBASE|SPBC646.04 - symbol:pla1 "poly(A) polymerase Pla1... 322 2.2e-28 1
UNIPROTKB|F1P3A1 - symbol:F1P3A1 "Uncharacterized protein... 320 8.3e-28 1
UNIPROTKB|F1NL95 - symbol:F1NL95 "Uncharacterized protein... 320 8.6e-28 1
FB|FBgn0015949 - symbol:hrg "hiiragi" species:7227 "Droso... 296 4.3e-27 2
CGD|CAL0002451 - symbol:PAP1 species:5476 "Candida albica... 306 1.2e-26 1
UNIPROTKB|Q9UW26 - symbol:PAPA "Poly(A) polymerase PAPa" ... 306 1.2e-26 1
SGD|S000001710 - symbol:PAP1 "Poly(A) polymerase, one of ... 302 3.5e-26 1
WB|WBGene00009658 - symbol:F43G6.5 species:6239 "Caenorha... 295 1.9e-25 1
WB|WBGene00011791 - symbol:T15H9.6 species:6239 "Caenorha... 277 1.7e-23 1
UNIPROTKB|Q09995 - symbol:T15H9.6 "Protein T15H9.6" speci... 277 1.7e-23 1
WB|WBGene00012528 - symbol:pap-1 species:6239 "Caenorhabd... 275 4.5e-23 1
UNIPROTKB|Q9U2P3 - symbol:pap-1 "Protein PAP-1" species:6... 275 4.5e-23 1
GENEDB_PFALCIPARUM|PFF1240w - symbol:PFF1240w "poly(A) po... 198 8.7e-21 2
UNIPROTKB|C6KT92 - symbol:PFF1240w "Poly(A) polymerase PA... 198 8.7e-21 2
TAIR|locus:2084274 - symbol:PAPS3 "poly(A) polymerase 3" ... 217 1.0e-15 1
UNIPROTKB|Q59G05 - symbol:PAPOLG "Poly(A) polymerase gamm... 139 1.0e-06 1
UNIPROTKB|F1PYB9 - symbol:PAPOLG "Uncharacterized protein... 139 1.0e-06 1
RGD|1308673 - symbol:Papola "poly (A) polymerase alpha" s... 107 0.00018 2
UNIPROTKB|H0YJ00 - symbol:PAPOLA "Poly(A) polymerase alph... 107 0.00098 1
>TAIR|locus:2043560 [details] [associations]
symbol:PAPS2 "poly(A) polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS]
[GO:0031123 "RNA 3'-end processing" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006351 GO:GO:0003723 EMBL:AC005395
GO:GO:0004652 GO:GO:0043631 KO:K14376 eggNOG:COG5186
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOGENOM:HOG000204376 HSSP:P25500
EMBL:AF255297 EMBL:AY039974 EMBL:AY074533 IPI:IPI00518420
PIR:E84653 RefSeq:NP_565611.1 UniGene:At.14867 SMR:O82312
IntAct:O82312 STRING:O82312 EnsemblPlants:AT2G25850.2 GeneID:817127
KEGG:ath:AT2G25850 TAIR:At2g25850 InParanoid:O82312 OMA:MGSESIN
ProtClustDB:CLSN2688428 BRENDA:2.7.7.19 Genevestigator:O82312
Uniprot:O82312
Length = 800
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 179/301 (59%), Positives = 214/301 (71%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
MLVSRFFRVYTQWRWPNPVM+C IE +L F VWDPRKN +DR H MPIITPAY CMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
Y VS TL+VMTEQFQ GN IC+EIEL K WS+LF+ Y FFEAY+NYLQVD++
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D SK + AFF GL R +
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450
Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
+ECQQFD +GTV FR+ ++ Y R G D++ S+V RR LPSFVFP+GYK R SRH +
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQS 510
Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS---EVPQPVSPGMT 297
+Q +P ++ S S ER KRK + EI RP+K K+A S + P S G+T
Sbjct: 511 QQCREPGDEGVGSLSDSVERYAKRKNDDEIMNSRPEKREKRASCSLHTLDAASPDSSGIT 570
Query: 298 T 298
T
Sbjct: 571 T 571
>TAIR|locus:2134113 [details] [associations]
symbol:nPAP "nuclear poly(a) polymerase" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA;ISS] [GO:0031123
"RNA 3'-end processing" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006623 "protein targeting to vacuole"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0016192 "vesicle-mediated transport" evidence=RCA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 EMBL:CP002687
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 IPI:IPI00656923
RefSeq:NP_001031779.1 UniGene:At.25084 ProteinModelPortal:F4JV63
SMR:F4JV63 PRIDE:F4JV63 EnsemblPlants:AT4G32850.8 GeneID:829421
KEGG:ath:AT4G32850 OMA:EDQLEWC PhylomeDB:F4JV63 Uniprot:F4JV63
Length = 765
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 179/295 (60%), Positives = 211/295 (71%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
MLVSRFFRVYTQWRWPNPVM+C IE ELGF VWD RKN +DR H MPIITPAY CMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
Y VS TL+VMTEQFQ GN I +EIEL K WS+LFE Y FFEAY+NYLQVDIV
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D ++ + AFF GL R E
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448
Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
+ECQQFD +GTV FR+ ++ Y + G D++ S+V RR LP FVFP+GY+ R SRH N
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSRHQN 508
Query: 241 EQSGKPCEDVKMCQSCSS-ERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSP 294
GK ED + S S ER KRK + E+ +VRP+K K+A +S + VSP
Sbjct: 509 LPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSPQSLDIVSP 563
>TAIR|locus:2030943 [details] [associations]
symbol:PAPS1 "poly(A) polymerase 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0043631 "RNA
polyadenylation" evidence=IDA] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006351 EMBL:AC034106
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 KO:K14376
UniGene:At.26787 UniGene:At.73166 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 HSSP:P25500 BRENDA:2.7.7.19
EMBL:BT005990 EMBL:AY323906 EMBL:AK227446 IPI:IPI00540119
PIR:B86315 RefSeq:NP_173240.2 ProteinModelPortal:Q9LMT2 SMR:Q9LMT2
IntAct:Q9LMT2 STRING:Q9LMT2 PaxDb:Q9LMT2 PRIDE:Q9LMT2
EnsemblPlants:AT1G17980.1 GeneID:838378 KEGG:ath:AT1G17980
TAIR:At1g17980 InParanoid:Q9LMT2 OMA:WDTLFEP PhylomeDB:Q9LMT2
ProtClustDB:CLSN2680711 Genevestigator:Q9LMT2 Uniprot:Q9LMT2
Length = 713
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 124/236 (52%), Positives = 159/236 (67%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
+LVSRFFRV+ QW WPN + +C + G LG VWDPR NPKDR H MPIITPAY CMNSS
Sbjct: 259 ILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPIITPAYPCMNSS 318
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
Y VS TL++M +FQ GN ICE +E KA+W LFE + FFEAY+NYLQ+DI
Sbjct: 319 YNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYLQIDISAANVDD 378
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
L WKGWVESR RQLTLKIE+ +L CHP+P+ + D S+P + ++F GL RK+ +
Sbjct: 379 LRKWKGWVESRLRQLTLKIERHFK-MLHCHPHPHDFQDTSRPL-HCSYFMGLQRKQGVPA 436
Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPS 236
E +QFD + TV+ F+ ++ Y + G +I ++ RR LP+FVFP G RPS
Sbjct: 437 AEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPGGV---RPS 489
>DICTYBASE|DDB_G0288259 [details] [associations]
symbol:papA "poly(A) polymerase" species:44689
"Dictyostelium discoideum" [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA;ISS;IBA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;IBA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
dictyBase:DDB_G0288259 GO:GO:0005524 GO:GO:0046872 GO:GO:0006378
GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003723
EMBL:AAFI02000109 GO:GO:0005847 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003 HSSP:P25500
RefSeq:XP_636814.1 ProteinModelPortal:Q54J73 STRING:Q54J73
EnsemblProtists:DDB0216279 GeneID:8626531 KEGG:ddi:DDB_G0288259
OMA:NINESST ProtClustDB:PTZ00418 Uniprot:Q54J73
Length = 809
Score = 376 (137.4 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 93/276 (33%), Positives = 141/276 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++ RFF+VY W+WP P+++C I E G LG VW+P++ D++H MPIITPAY MNS+
Sbjct: 302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPIITPAYPSMNST 358
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
Y VS TLQ+M +F G I +IE G+ W L E FF Y Y+++D
Sbjct: 359 YNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEED 418
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYP-------NKYIDPSKPCPNSAFFWGLS 173
W+GW+ES+ R L +E T + PYP +K +P + C ++FF GLS
Sbjct: 419 SRKWEGWIESKLRFLISNLES-TPKMKFAVPYPKGFTNNLHKANNPDQIC--TSFFMGLS 475
Query: 174 RKEVGTSKECQQFDFQGTVKNFRRGIDNY-RVRR--EGRDIYFSYVCRRHLPSFVFPDGY 230
T + D V F I ++ R + + DI Y+ ++ LP+FV +G
Sbjct: 476 FNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEGP 535
Query: 231 KWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKK 266
+ + +G+P K +S +S+ +L K
Sbjct: 536 EEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPK 571
>ZFIN|ZDB-GENE-040426-1256 [details] [associations]
symbol:papolg "poly(A) polymerase gamma"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA;IBA]
[GO:0031123 "RNA 3'-end processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IBA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
ZFIN:ZDB-GENE-040426-1256 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 KO:K14376 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOVERGEN:HBG053502 CTD:64895 EMBL:BC056818
IPI:IPI00492667 RefSeq:NP_956915.1 UniGene:Dr.79169
ProteinModelPortal:Q6PGV5 SMR:Q6PGV5 STRING:Q6PGV5 PRIDE:Q6PGV5
GeneID:393593 KEGG:dre:393593 InParanoid:Q6PGV5 NextBio:20814613
ArrayExpress:Q6PGV5 Bgee:Q6PGV5 Uniprot:Q6PGV5
Length = 744
Score = 366 (133.9 bits), Expect = 9.0e-33, P = 9.0e-33
Identities = 103/313 (32%), Positives = 154/313 (49%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 269 LVHKFFLVFSKWEWPNPVLLKQPEDSNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 328
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T +M E+F+ G + +EI GKA+WS LFE FF+ Y +Y+ +
Sbjct: 329 NVSTSTRTIMNEEFKNGLTVTDEILQGKADWSKLFEPPNFFQQYRHYIVLTASASTEENH 388
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN-----SAFFWGLSRKE 176
L W G VES+ R L +E++ L H P + SK N S +F G+S K+
Sbjct: 389 LEWIGLVESKIRVLVGNLERNEYITL-AHVNPQSF-PGSKENRNENDFVSMWFIGISFKK 446
Query: 177 VGTSKECQQFDFQGTVKNFR----RGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKW 232
+ S +C D +++F R N + ++G I ++V ++ L ++ P+ +
Sbjct: 447 LDNS-DCVNIDLTYDIQSFTDTVYRQASNINMLKDGMTIEATHVKKKQLHHYLPPELVQR 505
Query: 233 HRPSR-HFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQP 291
+ S N S K C SS QL ++ +I P S + + +P
Sbjct: 506 KKKSLGDINRSSNGGGS--KRCSLDSS--QLDSSRDTDIGT--PFSS------PTPISKP 553
Query: 292 VSPGMTTEDPTNN 304
P T ED +++
Sbjct: 554 CQPASTPEDNSSS 566
>UNIPROTKB|G3V2A0 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
Pfam:PF04926 Pfam:PF04928 GO:GO:0005634 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 GO:GO:0043631 EMBL:AL163051 Gene3D:3.30.70.590
SUPFAM:SSF55003 HGNC:HGNC:14981 ChiTaRS:PAPOLA
ProteinModelPortal:G3V2A0 SMR:G3V2A0 Ensembl:ENST00000555626
ArrayExpress:G3V2A0 Bgee:G3V2A0 Uniprot:G3V2A0
Length = 475
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 98/313 (31%), Positives = 142/313 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 18 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 77
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 78 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 137
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 138 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 196
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 197 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 247
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
P+ ++ E VK+ S L ++ + P + K + + SS+
Sbjct: 248 PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRN 307
Query: 291 PVSPGMTTEDPTN 303
+P +T TN
Sbjct: 308 SPAPAVTAASVTN 320
>UNIPROTKB|Q3T0A2 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9913 "Bos
taurus" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003 UniGene:Bt.109586
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 OrthoDB:EOG4J6RQB EMBL:DAAA02053163
EMBL:BC102481 IPI:IPI00705304 SMR:Q3T0A2 STRING:Q3T0A2
Ensembl:ENSBTAT00000021001 Uniprot:Q3T0A2
Length = 693
Score = 352 (129.0 bits), Expect = 2.4e-31, P = 2.4e-31
Identities = 99/313 (31%), Positives = 143/313 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
PS ++ E VK+ S L ++ + P ++K + + SS+
Sbjct: 498 PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRN 557
Query: 291 PVSPGMTTEDPTN 303
+P +T TN
Sbjct: 558 SPAPAVTAASVTN 570
>UNIPROTKB|G3MYA2 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9913 "Bos
taurus" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 EMBL:DAAA02053163
Ensembl:ENSBTAT00000063150 Uniprot:G3MYA2
Length = 718
Score = 352 (129.0 bits), Expect = 2.7e-31, P = 2.7e-31
Identities = 99/313 (31%), Positives = 143/313 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
PS ++ E VK+ S L ++ + P ++K + + SS+
Sbjct: 498 PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRN 557
Query: 291 PVSPGMTTEDPTN 303
+P +T TN
Sbjct: 558 SPAPAVTAASVTN 570
>UNIPROTKB|P25500 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IDA] [GO:0000287
"magnesium ion binding" evidence=IDA] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043631 "RNA polyadenylation"
evidence=IDA] [GO:0004652 "polynucleotide adenylyltransferase
activity" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IBA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000287 GO:GO:0006378 GO:GO:0003723
GO:GO:0030145 GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003 EMBL:X61585
EMBL:X63436 IPI:IPI00686724 IPI:IPI00699231 PIR:S17875 PIR:S17925
PIR:S18642 RefSeq:NP_788820.1 UniGene:Bt.109586 PDB:1F5A PDB:1Q78
PDB:1Q79 PDBsum:1F5A PDBsum:1Q78 PDBsum:1Q79
ProteinModelPortal:P25500 SMR:P25500 STRING:P25500
Ensembl:ENSBTAT00000005300 GeneID:338051 KEGG:bta:338051 CTD:10914
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 InParanoid:P25500 OMA:SPVTTQG
EvolutionaryTrace:P25500 NextBio:20812502 ArrayExpress:P25500
Uniprot:P25500
Length = 739
Score = 352 (129.0 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 99/313 (31%), Positives = 143/313 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
PS ++ E VK+ S L ++ + P ++K + + SS+
Sbjct: 498 PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRN 557
Query: 291 PVSPGMTTEDPTN 303
+P +T TN
Sbjct: 558 SPAPAVTAASVTN 570
>UNIPROTKB|G3XAH6 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 EMBL:AL163051
Gene3D:3.30.70.590 SUPFAM:SSF55003 HGNC:HGNC:14981 ChiTaRS:PAPOLA
ProteinModelPortal:G3XAH6 SMR:G3XAH6 Ensembl:ENST00000392990
ArrayExpress:G3XAH6 Bgee:G3XAH6 Uniprot:G3XAH6
Length = 724
Score = 348 (127.6 bits), Expect = 7.4e-31, P = 7.4e-31
Identities = 98/313 (31%), Positives = 142/313 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
P+ ++ E VK+ S L ++ + P + K + + SS+
Sbjct: 498 PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRN 557
Query: 291 PVSPGMTTEDPTN 303
+P +T TN
Sbjct: 558 SPAPAVTAASVTN 570
>MGI|MGI:109301 [details] [associations]
symbol:Papola "poly (A) polymerase alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IBA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005737 "cytoplasm" evidence=IBA] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031123 "RNA 3'-end processing" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
MGI:MGI:109301 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0000287 GO:GO:0006378 GO:GO:0003723 GO:GO:0030145
GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 KO:K14376 eggNOG:COG5186
Gene3D:3.30.70.590 SUPFAM:SSF55003 CTD:10914
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 OMA:SPVTTQG OrthoDB:EOG4J6RQB ChiTaRS:PAPOLA
EMBL:U52197 EMBL:U58134 EMBL:U58135 EMBL:AB086650 IPI:IPI00224655
IPI:IPI00224656 IPI:IPI00266738 IPI:IPI00467146 RefSeq:NP_035242.1
UniGene:Mm.255877 ProteinModelPortal:Q61183 SMR:Q61183
STRING:Q61183 PhosphoSite:Q61183 PaxDb:Q61183 PRIDE:Q61183
DNASU:18789 Ensembl:ENSMUST00000021535 Ensembl:ENSMUST00000109901
Ensembl:ENSMUST00000166735 GeneID:18789 KEGG:mmu:18789
UCSC:uc007oyv.1 UCSC:uc007oyx.1 InParanoid:Q61183 NextBio:295064
Bgee:Q61183 CleanEx:MM_PAPOLA Genevestigator:Q61183
GermOnline:ENSMUSG00000021111 Uniprot:Q61183
Length = 739
Score = 348 (127.6 bits), Expect = 7.8e-31, P = 7.8e-31
Identities = 94/292 (32%), Positives = 136/292 (46%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKESPDREEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
PS ++ E VK+ S L ++ + P ++K + ++S
Sbjct: 498 PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549
>UNIPROTKB|Q9NRJ5 [details] [associations]
symbol:PAPOLB "Poly(A) polymerase beta" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IBA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0006378 GO:GO:0003723
EMBL:AC092610 GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
HOVERGEN:HBG053502 EMBL:AF218840 EMBL:BC036653 IPI:IPI00024525
RefSeq:NP_064529.4 UniGene:Hs.487409 ProteinModelPortal:Q9NRJ5
SMR:Q9NRJ5 STRING:Q9NRJ5 PhosphoSite:Q9NRJ5 DMDM:18203318
PaxDb:Q9NRJ5 PRIDE:Q9NRJ5 DNASU:56903 Ensembl:ENST00000404991
GeneID:56903 KEGG:hsa:56903 CTD:56903 GeneCards:GC07M004897
HGNC:HGNC:15970 MIM:607436 neXtProt:NX_Q9NRJ5 PharmGKB:PA32933
InParanoid:Q9NRJ5 OMA:FPGGVAW OrthoDB:EOG4THVSN GenomeRNAi:56903
NextBio:62363 ArrayExpress:Q9NRJ5 Bgee:Q9NRJ5 CleanEx:HS_PAPOLB
Genevestigator:Q9NRJ5 Uniprot:Q9NRJ5
Length = 636
Score = 346 (126.9 bits), Expect = 7.9e-31, P = 7.9e-31
Identities = 86/228 (37%), Positives = 116/228 (50%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQH 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--GLSRKE 176
L W G VES+ R L +E++ + H P + P K P+ F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-KENPDMEEFRTMWVIGLGLKK 445
Query: 177 VGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
S+ +D Q R N ++ G I ++ R+ L
Sbjct: 446 PDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLRRKEL 493
>UNIPROTKB|F1PDS0 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IBA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0005737 GO:GO:0006378 GO:GO:0003723
GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 OMA:SPVTTQG
EMBL:AAEX03005970 EMBL:AAEX03005971 Ensembl:ENSCAFT00000028221
Uniprot:F1PDS0
Length = 745
Score = 348 (127.6 bits), Expect = 8.0e-31, P = 8.0e-31
Identities = 99/310 (31%), Positives = 141/310 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 274 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 333
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 334 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 393
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 394 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 452
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L + P+ + +
Sbjct: 453 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL-PN-HVLQK 510
Query: 235 PSRHFNEQSG-KPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVS 293
+H E P D + S S+ + + P S SS+ +
Sbjct: 511 KKKHSTEGVRLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSG----SSQGRNSPA 566
Query: 294 PGMTTEDPTN 303
P +T TN
Sbjct: 567 PAVTAASVTN 576
>UNIPROTKB|P51003 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=ISS;IBA] [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378 "mRNA
polyadenylation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0043631 "RNA polyadenylation" evidence=ISS]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0030145 "manganese ion binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005524 GO:GO:0005737 GO:GO:0005654 GO:GO:0000287
Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723 GO:GO:0030145
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0004652
Reactome:REACT_78 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 CTD:10914 HOVERGEN:HBG053502 OMA:SPVTTQG
EMBL:BC000927 EMBL:BC036014 EMBL:BX248301 EMBL:BX248753
EMBL:BX161482 EMBL:X76770 IPI:IPI00384028 IPI:IPI01025082
RefSeq:NP_001238935.1 RefSeq:NP_001238936.1 RefSeq:NP_116021.2
UniGene:Hs.253726 ProteinModelPortal:P51003 SMR:P51003
DIP:DIP-27610N IntAct:P51003 MINT:MINT-125699 STRING:P51003
PhosphoSite:P51003 DMDM:59803092 PaxDb:P51003 PeptideAtlas:P51003
PRIDE:P51003 Ensembl:ENST00000216277 Ensembl:ENST00000557320
Ensembl:ENST00000557471 GeneID:10914 KEGG:hsa:10914 UCSC:uc001yfo.3
UCSC:uc001yfq.3 GeneCards:GC14P096969 HGNC:HGNC:14981 HPA:HPA001788
MIM:605553 neXtProt:NX_P51003 PharmGKB:PA32932 InParanoid:P51003
OrthoDB:EOG4J6RQB PhylomeDB:P51003 ChiTaRS:PAPOLA GenomeRNAi:10914
NextBio:41453 ArrayExpress:P51003 Bgee:P51003 CleanEx:HS_PAPOLA
Genevestigator:P51003 GermOnline:ENSG00000090060 Uniprot:P51003
Length = 745
Score = 348 (127.6 bits), Expect = 8.0e-31, P = 8.0e-31
Identities = 98/313 (31%), Positives = 142/313 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
P+ ++ E VK+ S L ++ + P + K + + SS+
Sbjct: 498 PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRN 557
Query: 291 PVSPGMTTEDPTN 303
+P +T TN
Sbjct: 558 SPAPAVTAASVTN 570
>MGI|MGI:1932115 [details] [associations]
symbol:Papolb "poly (A) polymerase beta (testis specific)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IBA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISS;ISA;IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IPI] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IBA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=ISA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 MGI:MGI:1932115 GO:GO:0005783
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0006397 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0000398 GO:GO:0006369 GO:GO:0004652 GO:GO:0043631 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
HOVERGEN:HBG053502 CTD:56903 OMA:FPGGVAW OrthoDB:EOG4THVSN
EMBL:AF039957 EMBL:AB030729 IPI:IPI00230087 RefSeq:NP_064327.1
UniGene:Mm.441372 ProteinModelPortal:Q9WVP6 SMR:Q9WVP6
MINT:MINT-6167909 STRING:Q9WVP6 PhosphoSite:Q9WVP6 PaxDb:Q9WVP6
PRIDE:Q9WVP6 GeneID:56522 KEGG:mmu:56522 InParanoid:Q9WVP6
NextBio:312850 Bgee:Q9WVP6 CleanEx:MM_PAPOLB Genevestigator:Q9WVP6
Uniprot:Q9WVP6
Length = 641
Score = 344 (126.2 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 79/198 (39%), Positives = 105/198 (53%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQH 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKETADKEEFRTMWVIGLVLKKP 446
Query: 178 GTSKECQQFDFQGTVKNF 195
S E D +++F
Sbjct: 447 ENS-EILSIDLTYDIQSF 463
>UNIPROTKB|F1SAQ7 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 EMBL:CT827800
Ensembl:ENSSSCT00000002783 Uniprot:F1SAQ7
Length = 693
Score = 345 (126.5 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 98/310 (31%), Positives = 141/310 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L + P+ + +
Sbjct: 447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL-PN-HVLQK 504
Query: 235 PSRHFNEQSG-KPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVS 293
+H + P D + S S+ + + P S SS+ +
Sbjct: 505 KKKHSTDGVRLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSG----SSQGRNSPA 560
Query: 294 PGMTTEDPTN 303
P +T TN
Sbjct: 561 PAVTAASVTN 570
>UNIPROTKB|I3L6F0 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 OMA:SPVTTQG EMBL:CT827800
Ensembl:ENSSSCT00000027948 Uniprot:I3L6F0
Length = 734
Score = 345 (126.5 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 98/310 (31%), Positives = 141/310 (45%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 284 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 343
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 344 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 403
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 404 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 462
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L + P+ + +
Sbjct: 463 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL-PN-HVLQK 520
Query: 235 PSRHFNEQSG-KPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVS 293
+H + P D + S S+ + + P S SS+ +
Sbjct: 521 KKKHSTDGVRLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSG----SSQGRNSPA 576
Query: 294 PGMTTEDPTN 303
P +T TN
Sbjct: 577 PAVTAASVTN 586
>UNIPROTKB|F1NDP1 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 GO:GO:0043631
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
EMBL:AADN02003685 IPI:IPI00587050 Ensembl:ENSGALT00000018089
ArrayExpress:F1NDP1 Uniprot:F1NDP1
Length = 620
Score = 342 (125.4 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 104/327 (31%), Positives = 147/327 (44%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 149 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 208
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 209 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 268
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + + W GL K+
Sbjct: 269 LEWVGLVESKIRILVGNLEKN-EFITLAHVNPQSFPAPKENPDKEEYRTMWVIGLVFKKT 327
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L + P+ + +
Sbjct: 328 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEMDMKIAARHVKRKQLHQLL-PN-HVLQK 385
Query: 235 PSRHFNEQSGKPC-EDVKMCQSCSSERQLKRKKEHEIKEVRP-DKSVKQAFISSEVPQPV 292
+H E D + S S+ + P + S SS P
Sbjct: 386 KKKHSTEGVRLTALNDSSLDLSMDSDNSTSVPSPTSAMKTSPLNSSGSSQGRSSPAPAVT 445
Query: 293 SPGMT-------TEDPTNNSEVMSSGG 312
+ +T T TN+SE SSGG
Sbjct: 446 AASVTNIQASEVTVPQTNSSE--SSGG 470
>RGD|1310946 [details] [associations]
symbol:Papolb "poly (A) polymerase beta (testis specific)"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783
"endoplasmic reticulum" evidence=ISO] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1310946 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 EMBL:CH474012 GO:GO:0004652 GO:GO:0043631 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOVERGEN:HBG053502 CTD:56903
EMBL:BC079046 IPI:IPI00363752 RefSeq:NP_001012020.1
UniGene:Rn.210888 SMR:Q6AYH1 GeneID:304300 KEGG:rno:304300
UCSC:RGD:1310946 NextBio:652828 Genevestigator:Q6AYH1
Uniprot:Q6AYH1
Length = 642
Score = 342 (125.4 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 79/198 (39%), Positives = 105/198 (53%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 269 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 328
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 329 NVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQH 388
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 389 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENVDKEEFRTMWVIGLVLKKP 447
Query: 178 GTSKECQQFDFQGTVKNF 195
S E D +++F
Sbjct: 448 ENS-EILSIDLTYDIQSF 464
>UNIPROTKB|F1NKG9 [details] [associations]
symbol:PAPOLA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006378 "mRNA polyadenylation" evidence=IBA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0005737
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 CTD:10914
GeneTree:ENSGT00390000017928 OMA:SPVTTQG EMBL:AADN02003685
IPI:IPI00820771 RefSeq:NP_001185530.1 UniGene:Gga.4316
Ensembl:ENSGALT00000037556 GeneID:395878 KEGG:gga:395878
NextBio:20815945 ArrayExpress:F1NKG9 Uniprot:F1NKG9
Length = 737
Score = 342 (125.4 bits), Expect = 3.5e-30, P = 3.5e-30
Identities = 104/327 (31%), Positives = 147/327 (44%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I +EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 327 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + + W GL K+
Sbjct: 387 LEWVGLVESKIRILVGNLEKN-EFITLAHVNPQSFPAPKENPDKEEYRTMWVIGLVFKKT 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L + P+ + +
Sbjct: 446 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEMDMKIAARHVKRKQLHQLL-PN-HVLQK 503
Query: 235 PSRHFNEQSGKPC-EDVKMCQSCSSERQLKRKKEHEIKEVRP-DKSVKQAFISSEVPQPV 292
+H E D + S S+ + P + S SS P
Sbjct: 504 KKKHSTEGVRLTALNDSSLDLSMDSDNSTSVPSPTSAMKTSPLNSSGSSQGRSSPAPAVT 563
Query: 293 SPGMT-------TEDPTNNSEVMSSGG 312
+ +T T TN+SE SSGG
Sbjct: 564 AASVTNIQASEVTVPQTNSSE--SSGG 588
>UNIPROTKB|Q9BWT3 [details] [associations]
symbol:PAPOLG "Poly(A) polymerase gamma" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004652 "polynucleotide adenylyltransferase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006378 "mRNA polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005524 GO:GO:0005634 EMBL:CH471053
GO:GO:0046872 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 HOVERGEN:HBG053502
EMBL:AY029162 EMBL:AF312211 EMBL:AJ308101 EMBL:AK021867
EMBL:AK023544 EMBL:AK314663 EMBL:BC111701 EMBL:BC113747
IPI:IPI00304442 RefSeq:NP_075045.2 UniGene:Hs.387471
ProteinModelPortal:Q9BWT3 SMR:Q9BWT3 STRING:Q9BWT3
PhosphoSite:Q9BWT3 DMDM:116242699 PaxDb:Q9BWT3 PRIDE:Q9BWT3
Ensembl:ENST00000238714 GeneID:64895 KEGG:hsa:64895 UCSC:uc002sai.3
CTD:64895 GeneCards:GC02P060983 HGNC:HGNC:14982 HPA:CAB017795
neXtProt:NX_Q9BWT3 PharmGKB:PA32934 InParanoid:Q9BWT3 OMA:IDGSSKR
OrthoDB:EOG4R23T8 PhylomeDB:Q9BWT3 GenomeRNAi:64895 NextBio:67037
ArrayExpress:Q9BWT3 Bgee:Q9BWT3 CleanEx:HS_PAPOLG
Genevestigator:Q9BWT3 GermOnline:ENSG00000115421 Uniprot:Q9BWT3
Length = 736
Score = 340 (124.7 bits), Expect = 5.7e-30, P = 5.7e-30
Identities = 78/231 (33%), Positives = 118/231 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ +
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN----SAFFWGLSRKEV 177
L W G VES+ R L +E++ + H P + + + S +F G+ + V
Sbjct: 387 LEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRV 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
++ +D Q R +N + +EG I ++V ++ L ++
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 496
>UNIPROTKB|A5D7N5 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 CTD:64895 OMA:IDGSSKR OrthoDB:EOG4R23T8
EMBL:DAAA02031008 EMBL:DAAA02031009 EMBL:BC140625 IPI:IPI00695296
RefSeq:NP_001091535.1 UniGene:Bt.24299 SMR:A5D7N5
Ensembl:ENSBTAT00000009749 GeneID:529071 KEGG:bta:529071
InParanoid:A5D7N5 NextBio:20874959 Uniprot:A5D7N5
Length = 740
Score = 340 (124.7 bits), Expect = 5.8e-30, P = 5.8e-30
Identities = 78/231 (33%), Positives = 118/231 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ +
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN----SAFFWGLSRKEV 177
L W G VES+ R L +E++ + H P + + + S +F G+ + V
Sbjct: 387 LEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRV 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
++ +D Q R +N + +EG I ++V ++ L ++
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 496
>UNIPROTKB|F1SQL7 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 KO:K14376 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 CTD:64895 OMA:IDGSSKR EMBL:CU467691
RefSeq:XP_003125156.1 UniGene:Ssc.62549 Ensembl:ENSSSCT00000009186
GeneID:100523547 KEGG:ssc:100523547 Uniprot:F1SQL7
Length = 741
Score = 340 (124.7 bits), Expect = 5.8e-30, P = 5.8e-30
Identities = 78/231 (33%), Positives = 118/231 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ +
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN----SAFFWGLSRKEV 177
L W G VES+ R L +E++ + H P + + + S +F G+ + V
Sbjct: 387 LEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRV 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
++ +D Q R +N + +EG I ++V ++ L ++
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 496
>UNIPROTKB|J9NS30 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 OMA:IDGSSKR EMBL:AAEX03007549
Ensembl:ENSCAFT00000044895 Uniprot:J9NS30
Length = 813
Score = 340 (124.7 bits), Expect = 7.3e-30, P = 7.3e-30
Identities = 78/231 (33%), Positives = 118/231 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ +
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN----SAFFWGLSRKEV 177
L W G VES+ R L +E++ + H P + + + S +F G+ + V
Sbjct: 387 LEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRV 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
++ +D Q R +N + +EG I ++V ++ L ++
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 496
>UNIPROTKB|I3LRR6 [details] [associations]
symbol:PAPOLB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005783 GO:GO:0005634 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 GO:GO:0043631 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 OMA:FPGGVAW EMBL:CU928347
Ensembl:ENSSSCT00000031977 Uniprot:I3LRR6
Length = 636
Score = 337 (123.7 bits), Expect = 7.7e-30, P = 7.7e-30
Identities = 78/198 (39%), Positives = 104/198 (52%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 282 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 341
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ +
Sbjct: 342 NVSVSTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIALLASAPTEKQH 401
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K
Sbjct: 402 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPRESPDKEEFRTMWVIGLVLKRP 460
Query: 178 GTSKECQQFDFQGTVKNF 195
S + D +++F
Sbjct: 461 ENS-DILSIDLTYDIQSF 477
>MGI|MGI:2442119 [details] [associations]
symbol:Papolg "poly(A) polymerase gamma" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006378 "mRNA polyadenylation" evidence=IBA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0043631 "RNA polyadenylation" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
MGI:MGI:2442119 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HOVERGEN:HBG053502 CTD:64895 OMA:IDGSSKR OrthoDB:EOG4R23T8
EMBL:DQ103505 EMBL:AK035810 EMBL:AL662810 EMBL:BC059271
IPI:IPI00317437 RefSeq:NP_766143.2 UniGene:Mm.470599 HSSP:P25500
ProteinModelPortal:Q6PCL9 SMR:Q6PCL9 PhosphoSite:Q6PCL9
PaxDb:Q6PCL9 PRIDE:Q6PCL9 Ensembl:ENSMUST00000020513 GeneID:216578
KEGG:mmu:216578 UCSC:uc007ifp.2 InParanoid:Q6PCL9 NextBio:375224
Bgee:Q6PCL9 CleanEx:MM_PAPOLG Genevestigator:Q6PCL9
GermOnline:ENSMUSG00000020273 Uniprot:Q6PCL9
Length = 739
Score = 338 (124.0 bits), Expect = 9.4e-30, P = 9.4e-30
Identities = 78/231 (33%), Positives = 118/231 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ +
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSK--PCPN--SAFFWGLSRKEV 177
L W G VES+ R L +E++ + H P + + N S +F G+ + V
Sbjct: 387 LEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKANNYVSMWFLGIIFRRV 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
++ +D Q R +N + ++G I ++V ++ L ++
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL 496
>RGD|1310337 [details] [associations]
symbol:Papolg "poly(A) polymerase gamma" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1310337 GO:GO:0005634 GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
CTD:64895 OrthoDB:EOG4R23T8 EMBL:CH473996 IPI:IPI00365079
RefSeq:NP_001100714.1 UniGene:Rn.27992 Ensembl:ENSRNOT00000008919
GeneID:305586 KEGG:rno:305586 UCSC:RGD:1310337 NextBio:654829
Uniprot:D3ZAN6
Length = 739
Score = 338 (124.0 bits), Expect = 9.4e-30, P = 9.4e-30
Identities = 78/231 (33%), Positives = 118/231 (51%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ +
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSK--PCPN--SAFFWGLSRKEV 177
L W G VES+ R L +E++ + H P + + N S +F G+ + V
Sbjct: 387 LEWVGLVESKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKANNYVSMWFLGIIFRRV 445
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
++ +D Q R +N + ++G I ++V ++ L ++
Sbjct: 446 ENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL 496
>ZFIN|ZDB-GENE-030131-3507 [details] [associations]
symbol:papola "poly(A) polymerase alpha"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA;IBA]
[GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0031123 "RNA 3'-end
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006378 "mRNA polyadenylation" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 ZFIN:ZDB-GENE-030131-3507 GO:GO:0005634
GO:GO:0005737 GO:GO:0006378 GO:GO:0006351 GO:GO:0003723
GO:GO:0004652 EMBL:AL953887 KO:K14376 Gene3D:3.30.70.590
SUPFAM:SSF55003 CTD:10914 GeneTree:ENSGT00390000017928
HOGENOM:HOG000204376 HOVERGEN:HBG053502 IPI:IPI00860939
RefSeq:NP_991321.2 UniGene:Dr.25690 SMR:Q5SNY2
Ensembl:ENSDART00000053858 GeneID:404041 KEGG:dre:404041
NextBio:20817515 Uniprot:Q5SNY2
Length = 723
Score = 333 (122.3 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 88/269 (32%), Positives = 131/269 (48%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR P DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEDCNLNLPVWDPRVTPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T +M E+F+ G I +EI KA+WS LFE FF+ Y++Y+ +
Sbjct: 327 NVSASTRAIMVEEFKRGLAITDEILQNKADWSKLFEAPNFFQKYKHYIVLLASAQTEKQH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W G+ K++
Sbjct: 387 LEWVGLVESKIRILVGNLEKN-EFITLAHVNPQSFPGPKEGNDKEEFSTMWVIGIVFKKM 445
Query: 178 GTSKECQ---QFDFQG-TVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWH 233
S+ FD Q T +R+ I + ++ + I +V R+ L + P+ H
Sbjct: 446 EGSENLNVDLTFDIQSFTDTVYRQAITS-KMFEQDMKITAMHVKRKQLHQLL-PE-VAIH 502
Query: 234 RPSRHFNEQSGKPCEDVKMCQSCSSERQL 262
R R + + D + S S+ +
Sbjct: 503 RSKRKHSSDGVRAMNDSNLDLSLDSDNSM 531
>POMBASE|SPBC646.04 [details] [associations]
symbol:pla1 "poly(A) polymerase Pla1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IGI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IGI] [GO:0006378 "mRNA polyadenylation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 PomBase:SPBC646.04 GO:GO:0005829
GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0006378
GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0005847
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 OMA:FPGGVAW EMBL:X79705
EMBL:AB027883 PIR:JC6058 RefSeq:NP_595362.1
ProteinModelPortal:Q10295 SMR:Q10295 MINT:MINT-2730388
STRING:Q10295 EnsemblFungi:SPBC646.04.1 GeneID:2541099
KEGG:spo:SPBC646.04 OrthoDB:EOG4SR150 NextBio:20802212
Uniprot:Q10295
Length = 566
Score = 322 (118.4 bits), Expect = 2.2e-28, P = 2.2e-28
Identities = 58/163 (35%), Positives = 93/163 (57%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V++FFR+ QW WP P+++ PIE G L +W+P+ P D++HRMPIITPAY M ++
Sbjct: 253 VIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
+ ++L T ++ + I ++I + WSALF+ + FF Y++YL +
Sbjct: 313 HNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITAAAKTAEA 372
Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPC 163
L W G VES+ R L ++E + + HP+ NK D C
Sbjct: 373 QLKWAGLVESKLRHLVTRLEL-VDAIALAHPF-NKGFDKVYNC 413
>UNIPROTKB|F1P3A1 [details] [associations]
symbol:F1P3A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008811 "chloramphenicol
O-acetyltransferase activity" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR001707
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 ProDom:PD002660 GO:GO:0005634
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 GO:GO:0043631
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
GO:GO:0008811 EMBL:AADN02046885 EMBL:AADN02046884 IPI:IPI00820385
Ensembl:ENSGALT00000040310 Uniprot:F1P3A1
Length = 738
Score = 320 (117.7 bits), Expect = 8.3e-28, P = 8.3e-28
Identities = 70/199 (35%), Positives = 105/199 (52%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF ++++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLIFSKWEWPNPVLLKQPEENNLNLPVWDPRVNPSDRYHVMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T V+ E+ + G + EI G+++W LFE FF+ Y++Y+ +
Sbjct: 327 NVSTSTRAVVVEELKHGLAVTNEILQGRSDWPKLFEQPNFFQKYKHYIVLTASTYTEEHH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQ-CHPYPNKYIDPSKPCPNSAF--FW--GLSRKE 176
L W G VES+ R L +E+ N + H P + + C S + W G+ ++
Sbjct: 387 LEWVGLVESKIRVLVGNLER--NEFINIAHVNPQSFPGNQEHCKQSRYVSMWFLGIIFRK 444
Query: 177 VGTSKECQQFDFQGTVKNF 195
+ S E + D +++F
Sbjct: 445 L-ESAESTKIDLTYDIQSF 462
>UNIPROTKB|F1NL95 [details] [associations]
symbol:F1NL95 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008811
"chloramphenicol O-acetyltransferase activity" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=IBA] InterPro:IPR001707
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 ProDom:PD002660 GO:GO:0005634
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
GO:GO:0008811 EMBL:AADN02046885 EMBL:AADN02046884 IPI:IPI00600779
Ensembl:ENSGALT00000012751 OMA:RYHVMPI Uniprot:F1NL95
Length = 748
Score = 320 (117.7 bits), Expect = 8.6e-28, P = 8.6e-28
Identities = 70/199 (35%), Positives = 105/199 (52%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF ++++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLIFSKWEWPNPVLLKQPEENNLNLPVWDPRVNPSDRYHVMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T V+ E+ + G + EI G+++W LFE FF+ Y++Y+ +
Sbjct: 327 NVSTSTRAVVVEELKHGLAVTNEILQGRSDWPKLFEQPNFFQKYKHYIVLTASTYTEEHH 386
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQ-CHPYPNKYIDPSKPCPNSAF--FW--GLSRKE 176
L W G VES+ R L +E+ N + H P + + C S + W G+ ++
Sbjct: 387 LEWVGLVESKIRVLVGNLER--NEFINIAHVNPQSFPGNQEHCKQSRYVSMWFLGIIFRK 444
Query: 177 VGTSKECQQFDFQGTVKNF 195
+ S E + D +++F
Sbjct: 445 L-ESAESTKIDLTYDIQSF 462
>FB|FBgn0015949 [details] [associations]
symbol:hrg "hiiragi" species:7227 "Drosophila melanogaster"
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=ISS;IDA;NAS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;IBA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 HSSP:P25500 EMBL:AY113434 ProteinModelPortal:Q8MZ09
SMR:Q8MZ09 STRING:Q8MZ09 PaxDb:Q8MZ09 PRIDE:Q8MZ09
FlyBase:FBgn0015949 InParanoid:Q8MZ09 OrthoDB:EOG42547T ChiTaRS:HRG
ArrayExpress:Q8MZ09 Bgee:Q8MZ09 Uniprot:Q8MZ09
Length = 659
Score = 296 (109.3 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 61/151 (40%), Positives = 87/151 (57%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W+WPNPV++ + L F VWDPR N DR H MPIITPAY NS++
Sbjct: 276 LVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTF 335
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
VS T +V+ +F G I +EI LG+ W LFE FF Y +++ + +
Sbjct: 336 NVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDH 395
Query: 122 LTWKGWVESRFRQLTLKIEQDTN-GLLQCHP 151
L W G VES+ R L +E++ + L +P
Sbjct: 396 LEWCGLVESKVRLLISNLERNPHIALAHVNP 426
Score = 40 (19.1 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 187 DFQGTVKNFRRGID----NYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPS 236
D +++NF + N ++ +EG I +V R+ L ++ D K R S
Sbjct: 484 DLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKS 537
>CGD|CAL0002451 [details] [associations]
symbol:PAP1 species:5476 "Candida albicans" [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISS;IDA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0071050 "snoRNA polyadenylation" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 CGD:CAL0002451 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 EMBL:AACQ01000100 GO:GO:0044011 GO:GO:0004652
KO:K14376 EMBL:AF167162 EMBL:AB021667 RefSeq:XP_714613.1
ProteinModelPortal:Q9UW26 STRING:Q9UW26 GeneID:3643763
KEGG:cal:CaO19.3197 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 Uniprot:Q9UW26
Length = 555
Score = 306 (112.8 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 63/167 (37%), Positives = 92/167 (55%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V +FF +Y+QW WP PV++ IE G L VW+PR DR HRMP+ITPAY M ++
Sbjct: 253 VIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQ-VDIVXXXXX 119
+ ++ T +V+ +FQ G + +I +GK WS L E + FF Y+ YL V
Sbjct: 313 HNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYA 372
Query: 120 XLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNS 166
L + G VES+ R L K+E G+ HPY + + C N+
Sbjct: 373 EHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF-ENGYYCDNA 417
>UNIPROTKB|Q9UW26 [details] [associations]
symbol:PAPA "Poly(A) polymerase PAPa" species:237561
"Candida albicans SC5314" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=ISS;IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
CGD:CAL0002451 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006378 GO:GO:0006351 GO:GO:0003723 EMBL:AACQ01000100
GO:GO:0044011 GO:GO:0004652 KO:K14376 EMBL:AF167162 EMBL:AB021667
RefSeq:XP_714613.1 ProteinModelPortal:Q9UW26 STRING:Q9UW26
GeneID:3643763 KEGG:cal:CaO19.3197 eggNOG:COG5186
Gene3D:3.30.70.590 SUPFAM:SSF55003 Uniprot:Q9UW26
Length = 555
Score = 306 (112.8 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 63/167 (37%), Positives = 92/167 (55%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V +FF +Y+QW WP PV++ IE G L VW+PR DR HRMP+ITPAY M ++
Sbjct: 253 VIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQ-VDIVXXXXX 119
+ ++ T +V+ +FQ G + +I +GK WS L E + FF Y+ YL V
Sbjct: 313 HNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYA 372
Query: 120 XLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNS 166
L + G VES+ R L K+E G+ HPY + + C N+
Sbjct: 373 EHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF-ENGYYCDNA 417
>SGD|S000001710 [details] [associations]
symbol:PAP1 "Poly(A) polymerase, one of three factors
required for mRNA 3'-end pol" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA;IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IDA;IMP] [GO:0005654 "nucleoplasm" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071050 "snoRNA polyadenylation"
evidence=IGI] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 SGD:S000001710 GO:GO:0005524
GO:GO:0000287 GO:GO:0006378 GO:GO:0006351 EMBL:BK006944
GO:GO:0003723 GO:GO:0005847 GO:GO:0004652 EMBL:X65124
RefSeq:NP_012929.4 GeneID:853873 KEGG:sce:YKR004C PDB:3C66
PDBsum:3C66 RefSeq:NP_012927.3 GeneID:853871 KEGG:sce:YKR002W
KO:K14376 GO:GO:0071050 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
OMA:FPGGVAW OrthoDB:EOG4SR150 EMBL:X60307 EMBL:Z28227 PIR:S19031
PDB:1FA0 PDB:2HHP PDB:2O1P PDB:2Q66 PDBsum:1FA0 PDBsum:2HHP
PDBsum:2O1P PDBsum:2Q66 ProteinModelPortal:P29468 SMR:P29468
DIP:DIP-2297N IntAct:P29468 MINT:MINT-375429 STRING:P29468
PaxDb:P29468 PeptideAtlas:P29468 EnsemblFungi:YKR002W CYGD:YKR002w
EvolutionaryTrace:P29468 NextBio:975142 Genevestigator:P29468
GermOnline:YKR002W Uniprot:P29468
Length = 568
Score = 302 (111.4 bits), Expect = 3.5e-26, P = 3.5e-26
Identities = 62/165 (37%), Positives = 96/165 (58%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++++RFF + ++W WP PV++ PIE G L VW+P+ +DRSHRMP+ITPAY M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
+ ++ T +V+ ++F G +I +I K W+ LFE FF Y+ YL++
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373
Query: 121 L-LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCP 164
L W G VES+ R L +K+E G+ HP+ K + S CP
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCP 416
>WB|WBGene00009658 [details] [associations]
symbol:F43G6.5 species:6239 "Caenorhabditis elegans"
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006351
GO:GO:0003723 GO:GO:0004652 GO:GO:0043631 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 GeneTree:ENSGT00390000017928
OMA:FPGGVAW HSSP:P25500 EMBL:Z50070 EMBL:AL032651 PIR:C88325
PIR:T22140 RefSeq:NP_496524.1 ProteinModelPortal:G5EBX5 SMR:G5EBX5
EnsemblMetazoa:F43G6.5 GeneID:174816 KEGG:cel:CELE_F43G6.5
CTD:174816 WormBase:F43G6.5 NextBio:885628 Uniprot:G5EBX5
Length = 554
Score = 295 (108.9 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 65/209 (31%), Positives = 109/209 (52%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPI-----EMGELGFSVWDPRKNPKDRSHRMPIITPAYHC 56
L+ + F +++ W+WP PV++ I ++ +L VWDPR+N DR H MPI+TPA+
Sbjct: 266 LIQKVFFIFSTWKWPAPVLLDFISSDRMDLAQLNQLVWDPRRNQSDRYHLMPIVTPAFPQ 325
Query: 57 MNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXX 116
NS++ VS +++V+ E+ + C+ I+ G W L E FF Y++++ + +
Sbjct: 326 QNSTHNVSRSSMKVIQEEMKDALITCDNIQNGSCNWMDLLEEINFFSRYKHFISLSMTAE 385
Query: 117 XXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKE 176
L + G+ ESR RQL L +E++ G+ H P K+ P S +F GL E
Sbjct: 386 TEKDELAFGGFFESRIRQLVLILEKN-QGIKLAHINPKKFKAAKDP-KKSVWFIGLQFDE 443
Query: 177 VGTSKECQQFDFQGTVKNFRRGIDNYRVR 205
+ D ++ F+R ID Y+ +
Sbjct: 444 -----NVKNLDLTKDIQQFKRNID-YQAK 466
>WB|WBGene00011791 [details] [associations]
symbol:T15H9.6 species:6239 "Caenorhabditis elegans"
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 EMBL:Z47356 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376 HSSP:P25500
PIR:T24943 RefSeq:NP_496067.1 ProteinModelPortal:Q09995 SMR:Q09995
STRING:Q09995 EnsemblMetazoa:T15H9.6 GeneID:174513
KEGG:cel:CELE_T15H9.6 UCSC:T15H9.6 CTD:174513 WormBase:T15H9.6
InParanoid:Q09995 OMA:PFGSYRL NextBio:884348 Uniprot:Q09995
Length = 554
Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 65/195 (33%), Positives = 104/195 (53%)
Query: 2 LVSRFFRVYTQWRWPNPVMM----CP-IEMGELGFSVWDPRKNPKDRSHRMPIITPAYHC 56
L+ + F +++ W WP PV++ C ++ +L VWDPR+N DR H MPIITPA+
Sbjct: 261 LIQKVFFIFSTWNWPAPVLLDYINCDRTDLAQLNQLVWDPRRNHADRYHLMPIITPAFPQ 320
Query: 57 MNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXX 116
NS++ VS +++V+ ++ + IC++I G EW L E FF Y +++ + +
Sbjct: 321 QNSTHNVSRSSMKVIQDEMKKALIICDKIHEGTLEWRDLLEEINFFSKYHHFIALKLKAE 380
Query: 117 XXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPY-PNKYIDPSKPCPNSAFFWGL--- 172
L + G+ ESR RQL +E+ N ++Q P K+ D P S +F GL
Sbjct: 381 SVKEELAFGGFFESRIRQLVQILEK--NQVIQVAQINPRKFKDVKDP-KKSIWFIGLEFV 437
Query: 173 -SRKEVGTSKECQQF 186
+ K V + + QQF
Sbjct: 438 ANVKNVDLTSDIQQF 452
>UNIPROTKB|Q09995 [details] [associations]
symbol:T15H9.6 "Protein T15H9.6" species:6239
"Caenorhabditis elegans" [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
InterPro:IPR002934 InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926
Pfam:PF04928 PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0004652 EMBL:Z47356 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376 HSSP:P25500
PIR:T24943 RefSeq:NP_496067.1 ProteinModelPortal:Q09995 SMR:Q09995
STRING:Q09995 EnsemblMetazoa:T15H9.6 GeneID:174513
KEGG:cel:CELE_T15H9.6 UCSC:T15H9.6 CTD:174513 WormBase:T15H9.6
InParanoid:Q09995 OMA:PFGSYRL NextBio:884348 Uniprot:Q09995
Length = 554
Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 65/195 (33%), Positives = 104/195 (53%)
Query: 2 LVSRFFRVYTQWRWPNPVMM----CP-IEMGELGFSVWDPRKNPKDRSHRMPIITPAYHC 56
L+ + F +++ W WP PV++ C ++ +L VWDPR+N DR H MPIITPA+
Sbjct: 261 LIQKVFFIFSTWNWPAPVLLDYINCDRTDLAQLNQLVWDPRRNHADRYHLMPIITPAFPQ 320
Query: 57 MNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXX 116
NS++ VS +++V+ ++ + IC++I G EW L E FF Y +++ + +
Sbjct: 321 QNSTHNVSRSSMKVIQDEMKKALIICDKIHEGTLEWRDLLEEINFFSKYHHFIALKLKAE 380
Query: 117 XXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPY-PNKYIDPSKPCPNSAFFWGL--- 172
L + G+ ESR RQL +E+ N ++Q P K+ D P S +F GL
Sbjct: 381 SVKEELAFGGFFESRIRQLVQILEK--NQVIQVAQINPRKFKDVKDP-KKSIWFIGLEFV 437
Query: 173 -SRKEVGTSKECQQF 186
+ K V + + QQF
Sbjct: 438 ANVKNVDLTSDIQQF 452
>WB|WBGene00012528 [details] [associations]
symbol:pap-1 species:6239 "Caenorhabditis elegans"
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR002934 InterPro:IPR007010
InterPro:IPR007012 InterPro:IPR011068 InterPro:IPR014492
Pfam:PF01909 Pfam:PF04926 Pfam:PF04928 PIRSF:PIRSF018425
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0006378
GO:GO:0010171 GO:GO:0040011 GO:GO:0048477 GO:GO:0006351
GO:GO:0003723 GO:GO:0040035 GO:GO:0040027 GO:GO:0004652 KO:K14376
eggNOG:COG5186 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376 HSSP:P25500
EMBL:AL021474 PIR:G89189 RefSeq:NP_505683.1
ProteinModelPortal:Q9U2P3 SMR:Q9U2P3 STRING:Q9U2P3 PaxDb:Q9U2P3
EnsemblMetazoa:Y32F6A.3.1 EnsemblMetazoa:Y32F6A.3.2 GeneID:179458
KEGG:cel:CELE_Y32F6A.3 UCSC:Y32F6A.3 CTD:179458 WormBase:Y32F6A.3
InParanoid:Q9U2P3 OMA:CEALEIC NextBio:905480 Uniprot:Q9U2P3
Length = 655
Score = 275 (101.9 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 60/172 (34%), Positives = 97/172 (56%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPI-----EMGELGFSVWDPRKNPKDRSHRMPIITPAYHC 56
LV R F +++ W WP+PV++ + ++ L VWDPR+ DR H MPIITPA+
Sbjct: 259 LVHRMFFIFSTWTWPHPVVLNEMNNDRNDIPTLCELVWDPRRKNTDRFHVMPIITPAFPE 318
Query: 57 MNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXX 116
NS++ V+ T V+ + IC +I GK++W+ALFE FF Y++++ + +
Sbjct: 319 QNSTHNVTRSTATVIKNEICEALEICRDISEGKSKWTALFEEVNFFSRYKHFIALIMAAP 378
Query: 117 XXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF 168
L + G++ESR R L +E++ + ++ H PNK+ KP PN+ F
Sbjct: 379 NEEEELNYGGFLESRIRLLVQSLERNQD-IIIAHNDPNKH----KPSPNAKF 425
>UNIPROTKB|Q9U2P3 [details] [associations]
symbol:pap-1 "Protein PAP-1" species:6239 "Caenorhabditis
elegans" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0006915 GO:GO:0002119
GO:GO:0006378 GO:GO:0010171 GO:GO:0040011 GO:GO:0048477
GO:GO:0006351 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0004652 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 GeneTree:ENSGT00390000017928 HOGENOM:HOG000204376
HSSP:P25500 EMBL:AL021474 PIR:G89189 RefSeq:NP_505683.1
ProteinModelPortal:Q9U2P3 SMR:Q9U2P3 STRING:Q9U2P3 PaxDb:Q9U2P3
EnsemblMetazoa:Y32F6A.3.1 EnsemblMetazoa:Y32F6A.3.2 GeneID:179458
KEGG:cel:CELE_Y32F6A.3 UCSC:Y32F6A.3 CTD:179458 WormBase:Y32F6A.3
InParanoid:Q9U2P3 OMA:CEALEIC NextBio:905480 Uniprot:Q9U2P3
Length = 655
Score = 275 (101.9 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 60/172 (34%), Positives = 97/172 (56%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPI-----EMGELGFSVWDPRKNPKDRSHRMPIITPAYHC 56
LV R F +++ W WP+PV++ + ++ L VWDPR+ DR H MPIITPA+
Sbjct: 259 LVHRMFFIFSTWTWPHPVVLNEMNNDRNDIPTLCELVWDPRRKNTDRFHVMPIITPAFPE 318
Query: 57 MNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXX 116
NS++ V+ T V+ + IC +I GK++W+ALFE FF Y++++ + +
Sbjct: 319 QNSTHNVTRSTATVIKNEICEALEICRDISEGKSKWTALFEEVNFFSRYKHFIALIMAAP 378
Query: 117 XXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF 168
L + G++ESR R L +E++ + ++ H PNK+ KP PN+ F
Sbjct: 379 NEEEELNYGGFLESRIRLLVQSLERNQD-IIIAHNDPNKH----KPSPNAKF 425
>GENEDB_PFALCIPARUM|PFF1240w [details] [associations]
symbol:PFF1240w "poly(A) polymerase PAP,
putative" species:5833 "Plasmodium falciparum" [GO:0006378 "mRNA
polyadenylation" evidence=ISS] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 EMBL:AL844505 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOGENOM:HOG000204376
ProtClustDB:PTZ00418 RefSeq:XP_966239.1 ProteinModelPortal:C6KT92
EnsemblProtists:PFF1240w:mRNA GeneID:3885690 KEGG:pfa:PFF1240w
EuPathDB:PlasmoDB:PF3D7_0625600 OMA:MEDENNI Uniprot:C6KT92
Length = 631
Score = 198 (74.8 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEM----GELGFSVWDPRKNPKDRSHRMPIITPAYHCM 57
L+ +FF+VY+ W W PV++ I+ G F VWDP KN KD+ H MPIITPA+ CM
Sbjct: 331 LICKFFKVYSIWNWKYPVLLQNIKKYNIEGLNNFPVWDPEKNIKDKLHIMPIITPAFPCM 390
Query: 58 NSSYKVSLGTLQVMTEQFQCGNRICEEIE 86
NS++ V+ T ++ E+F+ + I + +E
Sbjct: 391 NSTHNVTYCTRNILIEEFKRAHSIIQYME 419
Score = 112 (44.5 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 92 WSALFEHYPFFEAYENYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHP 151
W + E F Y+++L + I+ +WKGW+ES+ R L K+E T L+ P
Sbjct: 450 WMTILEPLDLFSTYKHFLHIQIMGINEFIYNSWKGWIESKIRLLFKKLE--TINELKIRP 507
Query: 152 YPNKYI-DPSKPCPNSAFFWGL 172
+P Y K S+FF L
Sbjct: 508 FPKFYFYKKEKSYYCSSFFIAL 529
>UNIPROTKB|C6KT92 [details] [associations]
symbol:PFF1240w "Poly(A) polymerase PAP, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006378 "mRNA
polyadenylation" evidence=ISS;IBA] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0006378 GO:GO:0006351
GO:GO:0003723 EMBL:AL844505 GO:GO:0004652 KO:K14376
Gene3D:3.30.70.590 SUPFAM:SSF55003 HOGENOM:HOG000204376
ProtClustDB:PTZ00418 RefSeq:XP_966239.1 ProteinModelPortal:C6KT92
EnsemblProtists:PFF1240w:mRNA GeneID:3885690 KEGG:pfa:PFF1240w
EuPathDB:PlasmoDB:PF3D7_0625600 OMA:MEDENNI Uniprot:C6KT92
Length = 631
Score = 198 (74.8 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEM----GELGFSVWDPRKNPKDRSHRMPIITPAYHCM 57
L+ +FF+VY+ W W PV++ I+ G F VWDP KN KD+ H MPIITPA+ CM
Sbjct: 331 LICKFFKVYSIWNWKYPVLLQNIKKYNIEGLNNFPVWDPEKNIKDKLHIMPIITPAFPCM 390
Query: 58 NSSYKVSLGTLQVMTEQFQCGNRICEEIE 86
NS++ V+ T ++ E+F+ + I + +E
Sbjct: 391 NSTHNVTYCTRNILIEEFKRAHSIIQYME 419
Score = 112 (44.5 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 92 WSALFEHYPFFEAYENYLQVDIVXXXXXXLLTWKGWVESRFRQLTLKIEQDTNGLLQCHP 151
W + E F Y+++L + I+ +WKGW+ES+ R L K+E T L+ P
Sbjct: 450 WMTILEPLDLFSTYKHFLHIQIMGINEFIYNSWKGWIESKIRLLFKKLE--TINELKIRP 507
Query: 152 YPNKYI-DPSKPCPNSAFFWGL 172
+P Y K S+FF L
Sbjct: 508 FPKFYFYKKEKSYYCSSFFIAL 529
>TAIR|locus:2084274 [details] [associations]
symbol:PAPS3 "poly(A) polymerase 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0043631 "RNA polyadenylation"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=RCA] InterPro:IPR007010 InterPro:IPR007012
InterPro:IPR011068 InterPro:IPR014492 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006351 GO:GO:0003723 GO:GO:0004652
GO:GO:0043631 KO:K14376 eggNOG:COG5186 Gene3D:3.30.70.590
SUPFAM:SSF55003 EMBL:AK221644 IPI:IPI00518099 RefSeq:NP_187308.3
UniGene:At.40500 ProteinModelPortal:Q56XM9 SMR:Q56XM9 IntAct:Q56XM9
STRING:Q56XM9 EnsemblPlants:AT3G06560.1 GeneID:819835
KEGG:ath:AT3G06560 TAIR:At3g06560 HOGENOM:HOG000006246
InParanoid:Q56XM9 OMA:IDETSWK PhylomeDB:Q56XM9
ProtClustDB:CLSN2699159 Genevestigator:Q56XM9 Uniprot:Q56XM9
Length = 507
Score = 217 (81.4 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 57/198 (28%), Positives = 92/198 (46%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
L++ FF + W+WP PV++ G P P ++P + Y C NS+
Sbjct: 248 LLANFFYTFAHWQWPTPVVLLEDTYPSTGAP---PGLMPI----QLPCGSHQY-C-NST- 297
Query: 62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
++ T + +F G+ + ++ W LFE YP+ Y + ++ + L
Sbjct: 298 -ITRSTFYKIVAEFLLGHNLTKDYLKLNFSWKDLFELYPYANTYTWFTKIHLSAANQEDL 356
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSK 181
W GWV+SRFR L +KIE+ G+ C P P +Y++ PN F+WGL + + S
Sbjct: 357 SDWVGWVKSRFRCLLIKIEE-VYGI--CDPNPTEYVETYTKQPNIVFYWGLQLRTINVSD 413
Query: 182 -ECQQFDFQGTVKNFRRG 198
E + DF +KN G
Sbjct: 414 IESVKIDF---LKNVNSG 428
>UNIPROTKB|Q59G05 [details] [associations]
symbol:PAPOLG "Poly(A) polymerase gamma variant"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043631 "RNA
polyadenylation" evidence=IEA] InterPro:IPR007010
InterPro:IPR011068 Pfam:PF04926 GO:GO:0005634 GO:GO:0003723
GO:GO:0004652 GO:GO:0043631 KO:K14376 Gene3D:3.30.70.590
SUPFAM:SSF55003 HOGENOM:HOG000204376 HOVERGEN:HBG053502
RefSeq:NP_075045.2 UniGene:Hs.387471 GeneID:64895 KEGG:hsa:64895
CTD:64895 HGNC:HGNC:14982 GenomeRNAi:64895 NextBio:67037
EMBL:AC011245 EMBL:AC012498 EMBL:AB209304 IPI:IPI00555821
ProteinModelPortal:Q59G05 SMR:Q59G05 STRING:Q59G05 PRIDE:Q59G05
Ensembl:ENST00000412217 ArrayExpress:Q59G05 Bgee:Q59G05
Uniprot:Q59G05
Length = 382
Score = 139 (54.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 41/163 (25%), Positives = 74/163 (45%)
Query: 70 VMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXLLTWKGWVE 129
VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ + L W G VE
Sbjct: 3 VMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVE 62
Query: 130 SRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN----SAFFWGLSRKEVGTSKECQ- 184
S+ R L +E++ + H P + + + S +F G+ + V ++
Sbjct: 63 SKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNI 121
Query: 185 --QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
+D Q R +N + +EG I ++V ++ L ++
Sbjct: 122 DLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 164
>UNIPROTKB|F1PYB9 [details] [associations]
symbol:PAPOLG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IBA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR007010 InterPro:IPR011068
Pfam:PF04926 GO:GO:0005634 GO:GO:0006378 GO:GO:0003723
GO:GO:0004652 Gene3D:3.30.70.590 SUPFAM:SSF55003
GeneTree:ENSGT00390000017928 EMBL:AAEX03007549
Ensembl:ENSCAFT00000004771 Uniprot:F1PYB9
Length = 384
Score = 139 (54.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 41/163 (25%), Positives = 74/163 (45%)
Query: 70 VMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXLLTWKGWVE 129
VM E+F+ G + +EI GK++WS L E FF+ Y +Y+ + L W G VE
Sbjct: 3 VMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVE 62
Query: 130 SRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN----SAFFWGLSRKEVGTSKECQ- 184
S+ R L +E++ + H P + + + S +F G+ + V ++
Sbjct: 63 SKIRVLVGNLERN-EFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNI 121
Query: 185 --QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFV 225
+D Q R +N + +EG I ++V ++ L ++
Sbjct: 122 DLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 164
>RGD|1308673 [details] [associations]
symbol:Papola "poly (A) polymerase alpha" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IBA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004652
"polynucleotide adenylyltransferase activity" evidence=ISO;IBA]
[GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IBA] [GO:0006378 "mRNA polyadenylation"
evidence=IBA] [GO:0043631 "RNA polyadenylation" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002934
InterPro:IPR007010 InterPro:IPR007012 InterPro:IPR011068
InterPro:IPR014492 Pfam:PF01909 Pfam:PF04926 Pfam:PF04928
PIRSF:PIRSF018425 RGD:1308673 GO:GO:0005634 GO:GO:0005737
GO:GO:0006378 GO:GO:0003723 GO:GO:0000398 GO:GO:0006369
GO:GO:0004652 Gene3D:3.30.70.590 SUPFAM:SSF55003 IPI:IPI00567428
Ensembl:ENSRNOT00000047832 UCSC:RGD:1308673 ArrayExpress:F1MAC5
Uniprot:F1MAC5
Length = 681
Score = 107 (42.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPR 37
LV +FF V+++W WPNPV++ E L VWDPR
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPR 303
Score = 59 (25.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 36/172 (20%), Positives = 62/172 (36%)
Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
L W G VES+ R L +E++ + H P + P + F W GL K+
Sbjct: 330 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKESPDREEFRTMWVIGLVFKKT 388
Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
S+ +D Q R N ++ I +V R+ L +
Sbjct: 389 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL--------- 439
Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
PS ++ E VK+ S L ++ + P ++K + ++S
Sbjct: 440 PSHVLQKRKKHSTEGVKLAALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 491
>UNIPROTKB|H0YJ00 [details] [associations]
symbol:PAPOLA "Poly(A) polymerase alpha" species:9606 "Homo
sapiens" [GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA] [GO:0043631 "RNA polyadenylation" evidence=IEA]
InterPro:IPR007012 Pfam:PF04928 GO:GO:0006351 GO:GO:0004652
EMBL:AL163051 HGNC:HGNC:14981 ChiTaRS:PAPOLA
Ensembl:ENST00000553461 Uniprot:H0YJ00
Length = 203
Score = 107 (42.7 bits), Expect = 0.00098, P = 0.00098
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPR 37
LV +FF V+++W WPNPV++ E L VWDPR
Sbjct: 154 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPR 189
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.438 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 322 316 0.00082 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 621 (66 KB)
Total size of DFA: 276 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.05u 0.11s 27.16t Elapsed: 00:00:01
Total cpu time: 27.06u 0.11s 27.17t Elapsed: 00:00:01
Start: Fri May 10 04:53:10 2013 End: Fri May 10 04:53:11 2013