BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020705
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/238 (48%), Positives = 148/238 (62%), Gaps = 5/238 (2%)
Query: 9 SAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLK 68
S F N ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED N L
Sbjct: 5 SMSFTNATF--SQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLP 62
Query: 69 SFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGW 128
S L+ F++ +F C +L + ++ F DF YK R+PV GAI+LD + ++C+LVKGW
Sbjct: 63 SLGLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGW 122
Query: 129 KGSS-WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA 187
K SS W FP+GK +KDE D CAIREV EETGFD S +N +EFI+ Q VRLYII
Sbjct: 123 KASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIP 182
Query: 188 GVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
G+ DT F +T+KEIS+I W L +L + K YMV PFLA LKKWI
Sbjct: 183 GISLDTRFESRTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 238
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 3/226 (1%)
Query: 21 ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED N L S L+ F++ +F
Sbjct: 10 QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69
Query: 81 NSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPRGK 139
C +L + ++ F DF YK R+PV GAI+LD + ++C+LVKGWK SS W FP+GK
Sbjct: 70 AHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGK 129
Query: 140 KNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQT 199
+KDE D CAIREV EETGFD S +N +EFI+ Q VRLYII G+ DT F +T
Sbjct: 130 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRT 189
Query: 200 KKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
+KEIS+I W L +L + K YMV PFLA LKKWI
Sbjct: 190 RKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 233
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 104 KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
K +PV GA I +E + +LV+G + SWSFPRGK +KDE D C IREV+EE GFD++
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60
Query: 164 KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 223
++ ++FIE+ + ++++I+GV + F PQ + EI +I W ++ +
Sbjct: 61 DYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK------T 114
Query: 224 HGVTGLKLYMVAPFLASLKKWISAHK 249
+ +K Y++ + L W+ +
Sbjct: 115 MYKSNIKYYLINSMMRPLSMWLRHQR 140
>pdb|2QKL|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 95
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 21 ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED N L S L+ F++ +F
Sbjct: 10 QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69
Query: 81 NSCDVLRPYVAHIDDIFKDFTSYKVR 106
C +L + ++ F DF YK R
Sbjct: 70 AHCPLLWKWSKVHEEAFDDFLRYKTR 95
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 123 ILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR 182
+LV +G ++ P GK N+ E IRE++EETG ++ +L + I F +V
Sbjct: 29 VLVTASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP-FNAHKVY 87
Query: 183 LYIIAGVRDDTAFAPQTKKEISEIAW 208
L I G P+ + EI IA
Sbjct: 88 LCIAQG-------QPKPQNEIERIAL 106
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 117 ETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
++ E CI+ + K WS+P+GK ++E A+RE+ EETG V
Sbjct: 36 DSIEVCIVHRP-KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPV 80
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 109 VTGAIILDETYERCILVKGWKGSS----WSFPRGKKNKDEEDHACAIREVQEETGFDV 162
V +LD+ R +L + +G S W FP GK + E A IRE++EE G V
Sbjct: 31 VVACALLDQD-NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHV 87
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 167
P A+I +E E G G WS P G E IREV EETG V
Sbjct: 22 PSVAAVIKNEQGELLFQYPG--GEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQVKKQ 79
Query: 168 KDEFIEKIF 176
K F K F
Sbjct: 80 KGVFGGKEF 88
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 100 FTSYKVRVPVTGAIILDETYERCILVKGWKG--SSWSFPRGKKNKDEEDHACAIREVQEE 157
F S +V V GA+ DE+ + ++V+ + W FP G +E+ A+REV EE
Sbjct: 20 FQSMSHQVGVAGAV-FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78
Query: 158 TGFDVSKLLNKDEFIEKIFGQQ---------RVRLYIIAGVRDDTAFAPQTKKEISEIAW 208
TG K EF + +Q + +YII ++ + ++E W
Sbjct: 79 TGI-------KSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEW 131
Query: 209 QRLDELQPASDDV-ISHGVTGLKLY 232
L++L + I+ V L LY
Sbjct: 132 MDLNDLAKTENTTPITSRVARLLLY 156
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 109 VTGAIILDETYERCILVKGWKGSS----WSFPRGKKNKDEEDHACAIREVQEETGFDV 162
VT A ++D R +L + G S W FP GK E A +RE+ EE G D
Sbjct: 10 VTAAALIDPD-GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 119 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 74 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 119
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 119 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 61 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 106
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 119 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 62 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 107
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 119 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 76 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 121
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 119 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 74 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 119
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 108 PVTGAIILDETYER--CILVKGWKGSSWSF----PRGKKNKDEEDHACAIREVQEETGFD 161
PV + +L T ER +LV+ ++ + F P GK ++ E A A RE++EE G +
Sbjct: 40 PVAASFVLPVT-ERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAE 98
Query: 162 VSKLLNKDEF 171
L+ F
Sbjct: 99 AETLIPLPSF 108
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 93 IDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIR 152
+ D+F + T Y+ T A I E ++ +LV+ G WS P G + D+ ++
Sbjct: 56 VKDLFCNETGYQTPKLDTRAAIFQE--DKILLVQENDGL-WSLPGGWCDVDQSVKDNVVK 112
Query: 153 EVQEETGFDV 162
EV+EE G DV
Sbjct: 113 EVKEEAGLDV 122
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 166
G ++ + E +L + W FP+G E A+REV EETG LL
Sbjct: 5 AGGVVFNAKREVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 133 WSFPRGKKNKDEEDHACAIREVQEETG 159
WSFP+G E+ A+REV EETG
Sbjct: 27 WSFPKGNIEPGEKPEETAVREVWEETG 53
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 131 SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164
+SW+ P G N++E +RE +EETG +S+
Sbjct: 70 NSWALPGGFVNRNESTEDSVLRETKEETGVVISQ 103
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 166
G ++ + E +L + W FP+G E A+REV E+TG LL
Sbjct: 5 AGGVVFNAKREVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLL 59
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
W+ P+G E+D A+RE QEE G + +L
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQL 70
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 132 SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 166
+W P+G ++ E+ AIRE++EETG ++++
Sbjct: 39 AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 101 TSYKVRVPVTGAIILDE------TYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREV 154
T V + G ++L+E E+ I K W P G E A+RE
Sbjct: 7 THVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREA 66
Query: 155 QEETGFDV 162
EETG V
Sbjct: 67 CEETGLRV 74
>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
Enzyme
pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
From Mycobacterium Tuberculosis
pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
Adp-ribose, A Nudix Enzyme
pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
Ions And Ampcpr, A Nudix Enzyme
pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
Amp-Cp (A Inhibitor), A Nudix Enzyme
Length = 207
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 133 WSFPRGKKN-KDEEDHACAIREVQEETGFDVSK---LLNKDEFIEKIFGQQRVRLYIIAG 188
W P G + E H A RE++EE G S L++ D F + VR+Y+ G
Sbjct: 72 WELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLD--TAPGFSDESVRVYLATG 129
Query: 189 VRD 191
+R+
Sbjct: 130 LRE 132
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 15 GGLPPQELLDDLCSRFVLNVPQEDQQSFERILF 47
G L Q L D +C RF LN P+ + +E+++F
Sbjct: 249 GLLKSQGLDDYICKRFSLNCPEANLSEWEQVIF 281
>pdb|3SGG|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_2193)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.25 A
Resolution
Length = 536
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 120 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 168
E V G GSS+ FP + D +D+ + E +++G ++ +L++
Sbjct: 360 EGDYFVAGPSGSSYIFPSKXSDADLDDYLAKLNEYVDKSGLNICNILDQ 408
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 133 WSFPRGKKNKDEEDHACAIREVQEETG 159
W P GK N DE REV EETG
Sbjct: 38 WDLPGGKVNPDESLKEGVAREVWEETG 64
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 129 KGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
+ S ++FP G DE IRE+ EETG +
Sbjct: 34 RWSGYAFPGGHVENDEAFAESVIREIYEETGLTI 67
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
W+ P+G E+D A+R QEE G + +L
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 170 EFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217
EF+E Q LYI+ V DD P +K+E+ QR+D L+P
Sbjct: 62 EFVEISARQTDEHLYIV--VEDDGPGIPLSKREVIFDRGQRVDTLRPG 107
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 168
VT I++D +++ +L++ + W P GK E RE EETG V K
Sbjct: 6 VTNCIVVD--HDQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELK 63
Query: 169 DEFIEKIFGQQRV----RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
F IF + ++ L+ + Q+ + ++ W++ DE+
Sbjct: 64 GIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPE--GKLEWKKKDEV 111
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
W F GK DE +RE++EE G + +
Sbjct: 37 WEFAGGKVEPDESQRQALVRELREELGIEAT 67
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 128 WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
WK SFP G E AIREV EETG +S +
Sbjct: 35 WKAGH-SFPGGHVEVGEPCATAAIREVFEETGLRLSGV 71
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 107 VPVTGAII---LDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
V G +I L E +L + W+ P+G + E++ AIRE +EE
Sbjct: 3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 62
Query: 164 KLLNKDEFIEKIFGQQR 180
+L ++ E +F + +
Sbjct: 63 QLTIHEDCHETLFYEAK 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,203,478
Number of Sequences: 62578
Number of extensions: 430386
Number of successful extensions: 1090
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 46
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)