Query 020706
Match_columns 322
No_of_seqs 291 out of 2098
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2.9E-29 6.3E-34 223.3 7.6 249 12-265 74-362 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 1.6E-27 3.4E-32 204.2 11.6 158 7-168 95-272 (419)
3 KOG4341 F-box protein containi 99.7 5.3E-17 1.1E-21 145.4 4.9 205 16-230 170-389 (483)
4 KOG1947 Leucine rich repeat pr 99.4 6.2E-12 1.3E-16 120.4 12.2 140 76-215 238-389 (482)
5 PF12937 F-box-like: F-box-lik 99.3 8.3E-13 1.8E-17 84.7 3.0 46 10-56 1-46 (47)
6 KOG1947 Leucine rich repeat pr 99.3 6.6E-12 1.4E-16 120.2 9.5 146 94-245 177-328 (482)
7 KOG2120 SCF ubiquitin ligase, 99.3 4.5E-12 9.7E-17 109.7 4.5 157 80-245 209-370 (419)
8 KOG1909 Ran GTPase-activating 99.2 3.6E-11 7.8E-16 106.1 7.2 89 128-224 183-281 (382)
9 KOG1909 Ran GTPase-activating 99.1 1.1E-10 2.4E-15 103.1 8.0 160 80-245 91-277 (382)
10 cd00116 LRR_RI Leucine-rich re 99.1 1.8E-09 3.8E-14 98.0 15.5 136 80-224 80-232 (319)
11 cd00116 LRR_RI Leucine-rich re 99.0 1.9E-08 4.2E-13 91.1 18.6 156 81-245 108-285 (319)
12 KOG3207 Beta-tubulin folding c 98.8 2.3E-09 5E-14 97.3 2.4 164 80-244 145-332 (505)
13 PF14580 LRR_9: Leucine-rich r 98.8 1.8E-09 3.8E-14 89.0 1.4 127 104-244 18-146 (175)
14 PF00646 F-box: F-box domain; 98.7 3E-09 6.5E-14 68.4 1.3 44 9-53 2-45 (48)
15 smart00256 FBOX A Receptor for 98.7 2E-08 4.4E-13 62.0 3.8 40 13-53 1-40 (41)
16 KOG3665 ZYG-1-like serine/thre 98.6 5.2E-08 1.1E-12 96.6 7.3 155 77-245 118-282 (699)
17 KOG3207 Beta-tubulin folding c 98.6 2.6E-08 5.7E-13 90.6 3.6 115 103-224 119-233 (505)
18 PF14580 LRR_9: Leucine-rich r 98.4 1E-07 2.3E-12 78.5 2.3 129 82-223 20-150 (175)
19 PLN00113 leucine-rich repeat r 98.3 1E-06 2.2E-11 92.1 7.8 128 103-245 116-243 (968)
20 KOG2739 Leucine-rich acidic nu 98.3 5.5E-08 1.2E-12 83.2 -1.7 67 178-244 81-149 (260)
21 COG5238 RNA1 Ran GTPase-activa 98.3 2.1E-06 4.5E-11 74.1 7.5 112 104-223 156-282 (388)
22 KOG4194 Membrane glycoprotein 98.2 3.2E-07 7E-12 86.5 -0.0 128 103-244 315-445 (873)
23 KOG3665 ZYG-1-like serine/thre 98.2 3.3E-06 7.1E-11 84.0 6.4 128 104-244 121-256 (699)
24 PLN00113 leucine-rich repeat r 98.1 3.3E-06 7.2E-11 88.2 6.5 81 81-164 140-220 (968)
25 COG5238 RNA1 Ran GTPase-activa 97.9 0.0003 6.5E-09 61.1 12.5 90 52-146 33-135 (388)
26 KOG3864 Uncharacterized conser 97.8 1.7E-05 3.7E-10 65.7 3.9 59 104-163 124-183 (221)
27 PLN03210 Resistant to P. syrin 97.7 6.1E-05 1.3E-09 80.0 7.3 13 186-198 800-812 (1153)
28 KOG2123 Uncharacterized conser 97.7 7.4E-06 1.6E-10 71.0 0.2 102 104-244 18-123 (388)
29 KOG4194 Membrane glycoprotein 97.7 8.9E-06 1.9E-10 77.1 0.2 34 189-223 198-231 (873)
30 PLN03210 Resistant to P. syrin 97.6 5.1E-05 1.1E-09 80.6 4.9 39 187-227 845-883 (1153)
31 KOG2982 Uncharacterized conser 97.6 4.3E-05 9.3E-10 67.0 3.5 88 77-166 67-156 (418)
32 KOG3864 Uncharacterized conser 97.6 8.6E-05 1.9E-09 61.6 4.7 105 107-245 103-211 (221)
33 KOG0618 Serine/threonine phosp 97.5 4.7E-05 1E-09 75.7 2.3 44 182-227 447-490 (1081)
34 KOG2997 F-box protein FBX9 [Ge 97.3 0.0001 2.2E-09 64.8 1.1 54 7-61 104-162 (366)
35 smart00367 LRR_CC Leucine-rich 97.2 0.0004 8.6E-09 38.1 3.0 25 129-153 1-25 (26)
36 KOG0444 Cytoskeletal regulator 97.2 2.8E-05 6E-10 74.5 -3.0 39 186-226 243-281 (1255)
37 PLN03215 ascorbic acid mannose 97.1 0.00048 1E-08 63.2 3.7 39 7-46 1-40 (373)
38 KOG1259 Nischarin, modulator o 97.0 0.00017 3.7E-09 63.4 0.1 124 103-245 282-406 (490)
39 KOG0444 Cytoskeletal regulator 96.9 0.00016 3.5E-09 69.4 -0.6 93 130-228 268-377 (1255)
40 KOG2982 Uncharacterized conser 96.9 0.00038 8.3E-09 61.2 1.6 149 83-243 47-204 (418)
41 KOG0618 Serine/threonine phosp 96.8 0.00019 4.2E-09 71.5 -1.3 124 104-245 358-483 (1081)
42 KOG1259 Nischarin, modulator o 96.7 0.001 2.2E-08 58.6 2.3 128 83-227 286-413 (490)
43 KOG0281 Beta-TrCP (transducin 96.6 0.0014 2.9E-08 58.5 2.5 46 11-57 76-125 (499)
44 PF13855 LRR_8: Leucine rich r 96.5 0.00024 5.2E-09 47.7 -2.0 38 186-224 23-60 (61)
45 KOG1859 Leucine-rich repeat pr 96.5 0.00024 5.1E-09 69.3 -2.9 107 104-226 186-292 (1096)
46 PF12799 LRR_4: Leucine Rich r 96.5 0.0026 5.6E-08 39.7 2.8 35 188-224 1-35 (44)
47 PLN03150 hypothetical protein; 96.5 0.0048 1E-07 61.4 6.0 16 186-201 488-503 (623)
48 KOG2739 Leucine-rich acidic nu 96.5 0.00027 6E-09 60.8 -2.6 115 100-224 38-154 (260)
49 smart00367 LRR_CC Leucine-rich 96.4 0.005 1.1E-07 33.6 3.1 24 104-127 1-25 (26)
50 PF13855 LRR_8: Leucine rich r 96.0 0.00071 1.5E-08 45.4 -1.9 16 185-200 46-61 (61)
51 PF13516 LRR_6: Leucine Rich r 96.0 0.0063 1.4E-07 32.4 2.3 23 187-209 1-23 (24)
52 KOG1644 U2-associated snRNP A' 96.0 0.005 1.1E-07 51.3 2.5 106 105-222 42-149 (233)
53 PF12799 LRR_4: Leucine Rich r 95.9 0.0067 1.4E-07 37.8 2.3 37 105-144 1-37 (44)
54 KOG1644 U2-associated snRNP A' 95.8 0.0032 6.8E-08 52.5 0.8 104 130-245 42-147 (233)
55 KOG0617 Ras suppressor protein 95.4 0.00031 6.6E-09 57.0 -6.5 109 104-228 32-165 (264)
56 PRK15387 E3 ubiquitin-protein 95.3 0.043 9.3E-07 55.6 6.8 16 187-202 301-316 (788)
57 KOG1859 Leucine-rich repeat pr 95.3 0.0062 1.4E-07 59.8 0.8 14 104-117 108-121 (1096)
58 PLN03150 hypothetical protein; 95.3 0.036 7.8E-07 55.2 6.2 107 83-199 420-526 (623)
59 PF13516 LRR_6: Leucine Rich r 94.9 0.02 4.2E-07 30.5 1.7 22 130-152 2-23 (24)
60 KOG2123 Uncharacterized conser 94.8 0.017 3.6E-07 50.7 2.1 116 82-209 20-136 (388)
61 PRK15387 E3 ubiquitin-protein 94.4 0.015 3.1E-07 59.0 0.9 34 189-224 423-456 (788)
62 smart00368 LRR_RI Leucine rich 94.4 0.057 1.2E-06 29.9 2.9 25 188-212 2-26 (28)
63 KOG4308 LRR-containing protein 94.3 0.0088 1.9E-07 57.4 -1.0 141 83-224 89-244 (478)
64 KOG3763 mRNA export factor TAP 94.2 0.1 2.2E-06 49.9 5.7 128 64-193 158-306 (585)
65 smart00368 LRR_RI Leucine rich 93.6 0.1 2.2E-06 28.9 2.9 24 130-154 2-25 (28)
66 PRK15370 E3 ubiquitin-protein 93.5 0.1 2.2E-06 52.9 4.9 10 82-91 221-230 (754)
67 KOG0531 Protein phosphatase 1, 93.1 0.023 5E-07 53.7 -0.4 107 103-227 93-200 (414)
68 KOG4658 Apoptotic ATPase [Sign 92.7 0.09 2E-06 54.3 3.2 111 102-224 542-653 (889)
69 KOG4308 LRR-containing protein 92.7 0.066 1.4E-06 51.4 2.0 117 104-224 171-301 (478)
70 KOG0472 Leucine-rich repeat pr 92.6 0.058 1.3E-06 49.7 1.5 39 186-226 503-541 (565)
71 KOG4579 Leucine-rich repeat (L 92.4 0.035 7.5E-07 43.7 -0.2 103 83-199 29-134 (177)
72 COG4886 Leucine-rich repeat (L 91.5 0.15 3.3E-06 47.7 3.0 36 186-224 253-288 (394)
73 KOG4579 Leucine-rich repeat (L 91.4 0.078 1.7E-06 41.8 0.8 125 105-243 27-153 (177)
74 KOG0617 Ras suppressor protein 91.3 0.0029 6.3E-08 51.5 -7.4 37 186-224 148-184 (264)
75 KOG4658 Apoptotic ATPase [Sign 91.1 0.19 4.1E-06 52.0 3.5 14 212-225 716-729 (889)
76 KOG0531 Protein phosphatase 1, 90.8 0.034 7.3E-07 52.6 -2.2 124 102-244 69-192 (414)
77 COG4886 Leucine-rich repeat (L 90.3 0.18 3.9E-06 47.2 2.2 103 105-223 116-219 (394)
78 KOG3763 mRNA export factor TAP 90.1 0.46 1E-05 45.6 4.7 90 148-245 210-308 (585)
79 PRK15370 E3 ubiquitin-protein 89.6 0.6 1.3E-05 47.5 5.4 100 105-224 325-426 (754)
80 PF13013 F-box-like_2: F-box-l 89.0 0.67 1.4E-05 34.9 4.0 30 9-39 21-50 (109)
81 KOG0274 Cdc4 and related F-box 89.0 0.16 3.5E-06 49.5 0.8 42 10-52 108-149 (537)
82 KOG4237 Extracellular matrix p 88.9 0.2 4.3E-06 46.2 1.3 86 152-247 270-355 (498)
83 PF13504 LRR_7: Leucine rich r 87.3 0.51 1.1E-05 22.7 1.6 11 214-224 2-12 (17)
84 KOG3735 Tropomodulin and leiom 84.7 2.6 5.6E-05 38.1 5.9 96 119-218 187-285 (353)
85 PF07723 LRR_2: Leucine Rich R 83.0 0.94 2E-05 24.5 1.6 25 189-213 1-26 (26)
86 KOG4237 Extracellular matrix p 82.5 1 2.2E-05 41.7 2.6 59 185-245 271-329 (498)
87 PRK15386 type III secretion pr 82.4 2.5 5.5E-05 39.7 5.2 69 80-164 51-120 (426)
88 PF09372 PRANC: PRANC domain; 82.4 1.1 2.3E-05 33.0 2.2 25 8-32 70-94 (97)
89 PRK15386 type III secretion pr 82.0 1.2 2.7E-05 41.8 3.0 56 102-166 49-104 (426)
90 KOG0472 Leucine-rich repeat pr 80.9 0.78 1.7E-05 42.6 1.3 35 210-246 502-536 (565)
91 PF00560 LRR_1: Leucine Rich R 73.1 2.2 4.9E-05 21.8 1.2 10 214-223 1-10 (22)
92 PF13306 LRR_5: Leucine rich r 69.1 1.1 2.5E-05 34.2 -0.8 51 186-241 79-129 (129)
93 KOG3926 F-box proteins [Amino 68.8 2.9 6.3E-05 36.6 1.6 51 3-54 195-246 (332)
94 KOG2502 Tub family proteins [G 65.8 3.8 8.3E-05 37.1 1.8 52 8-59 43-105 (355)
95 smart00369 LRR_TYP Leucine-ric 64.1 5.9 0.00013 21.0 1.7 12 188-199 2-13 (26)
96 smart00370 LRR Leucine-rich re 64.1 5.9 0.00013 21.0 1.7 12 188-199 2-13 (26)
97 PTZ00415 transmission-blocking 61.4 4.8 0.0001 43.9 1.8 7 302-308 179-185 (2849)
98 smart00365 LRR_SD22 Leucine-ri 51.5 13 0.00028 20.1 1.7 13 188-200 2-14 (26)
99 KOG1832 HIV-1 Vpr-binding prot 50.1 11 0.00024 38.7 2.1 16 207-222 1294-1309(1516)
100 KOG3735 Tropomodulin and leiom 48.3 32 0.0007 31.3 4.6 32 96-127 189-221 (353)
101 KOG1832 HIV-1 Vpr-binding prot 44.8 11 0.00023 38.7 1.2 19 181-199 1293-1311(1516)
102 KOG0532 Leucine-rich repeat (L 35.9 7.7 0.00017 37.9 -1.3 37 189-227 212-248 (722)
103 PF11702 DUF3295: Protein of u 31.2 19 0.0004 34.7 0.4 11 284-294 307-317 (507)
104 KOG4364 Chromatin assembly fac 28.7 35 0.00075 33.9 1.8 8 307-314 562-570 (811)
105 PF11332 DUF3134: Protein of u 27.3 44 0.00095 23.2 1.6 14 271-284 53-66 (73)
106 smart00364 LRR_BAC Leucine-ric 25.8 37 0.00081 18.4 0.8 11 189-199 3-13 (26)
107 smart00446 LRRcap occurring C- 25.0 53 0.0011 17.8 1.3 15 208-222 8-22 (26)
108 PF08004 DUF1699: Protein of u 24.1 1.7E+02 0.0036 22.7 4.3 33 83-115 19-51 (131)
109 PF12586 DUF3760: Protein of u 20.3 30 0.00065 21.6 -0.3 40 15-56 6-45 (46)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=2.9e-29 Score=223.30 Aligned_cols=249 Identities=23% Similarity=0.358 Sum_probs=209.5
Q ss_pred cCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCC
Q 020706 12 ELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGL 91 (322)
Q Consensus 12 ~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~ 91 (322)
.||+|++.+||++|+.+.+.+ +++||+.|+..|.+...|+++++..+.. +.-.+++..++.|+++.++.|+++||
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r-~a~~c~~~n~~AlD~~~~q~idL~t~~r----Dv~g~VV~~~~~Rcgg~lk~LSlrG~ 148 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCR-AAQCCTMWNKLALDGSCWQHIDLFTFQR----DVDGGVVENMISRCGGFLKELSLRGC 148 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhccccceeeehhcchh----cCCCcceehHhhhhcccccccccccc
Confidence 599999999999999999999 8999999999999999999999998743 34467889999999999999999998
Q ss_pred C--ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecccccc
Q 020706 92 H--NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 168 (322)
Q Consensus 92 ~--~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l 168 (322)
. .++.+..++.+|||+++|.+.+| .+|+..+..+++.|++|++|++..|..+|+..++.+++.||+|++|++++++.
T Consensus 149 r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 149 RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 7 48889999999999999999999 99999999999999999999999999999999999999999999999987753
Q ss_pred C-------------------CCCCCCC-chHHHHHHhcCCCCCEEEecCc-ccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020706 169 D-------------------TADKLSQ-DDEANAIASTMPKLKRLEMAYH-VISTEIVLKILSSCALLEFLDLRGCWDVK 227 (322)
Q Consensus 169 ~-------------------~~~~~~~-~~~~~~l~~~~p~L~~L~L~~~-~i~~~~l~~i~~~~~~L~~L~L~~c~~~~ 227 (322)
. ..||... .+.+..++..++-+..+++..| .+||.++..+...|..|+.|+.++|..++
T Consensus 229 i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 229 ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 2 1233322 2234555667888888888776 48999999999999999999999998875
Q ss_pred CCh-HHHHhcCCCCeeeCC-------------cccCc--ccccccccCCCCCCc
Q 020706 228 LDD-KFMKGNFPNLKVLGP-------------FVMDY--YEINDWDDCSDYSDG 265 (322)
Q Consensus 228 ~~~-~~l~~~~~~Lk~L~~-------------~~~~~--~~~~d~~~c~~~td~ 265 (322)
... ..+.++|++|++|.+ +.+++ ++.+|+++|..++|.
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 222 456788999999864 12333 677888888888875
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-27 Score=204.16 Aligned_cols=158 Identities=28% Similarity=0.371 Sum_probs=133.1
Q ss_pred CCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHH----------
Q 020706 7 FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLI---------- 76 (322)
Q Consensus 7 ~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~---------- 76 (322)
..+|+.||+||+..||+.|..+++++ ++.|||||+.++++..+|+.+|+....- .|....++++.-+
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~-~~~VC~Rfyr~~~de~lW~~lDl~~r~i--~p~~l~~l~~rgV~v~Rlar~~~ 171 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLK-VSGVCKRFYRLASDESLWQTLDLTGRNI--HPDVLGRLLSRGVIVFRLARSFM 171 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHH-HHHHHHHHhhccccccceeeeccCCCcc--ChhHHHHHHhCCeEEEEcchhhh
Confidence 45699999999999999999999999 6999999999999999999999986543 4554444432111
Q ss_pred ---------HhcCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHH
Q 020706 77 ---------TRSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP 146 (322)
Q Consensus 77 ---------~r~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~ 146 (322)
.-+...+++|+|+... +.+.+..+..+|.+|+.|+|.+..+.|.....+|++ .+|+.|+|+.|++++..
T Consensus 172 ~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 172 DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTEN 250 (419)
T ss_pred cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchh
Confidence 1123347788887643 677788888999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHhcCCCcceeecccccc
Q 020706 147 ALEAIGKHCKLLVVLCRNMHPL 168 (322)
Q Consensus 147 ~l~~l~~~c~~L~~L~l~~~~l 168 (322)
++..+..+|+.|..|++++|.+
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhc
Confidence 9999999999999999988754
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.66 E-value=5.3e-17 Score=145.40 Aligned_cols=205 Identities=20% Similarity=0.272 Sum_probs=132.1
Q ss_pred HHHHHHHccCChHHHhhhhhhhhHHHHHHhcCC-Cceeeecccccccc----------CChhHHHHHHHHHHHhcCCCee
Q 020706 16 DALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGP-YCWQEIDIEEWSNR----------CQPDHLDRMVEMLITRSSGSLR 84 (322)
Q Consensus 16 eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~-~lw~~i~l~~~~~~----------~~~~~~~~~l~~l~~r~~~~l~ 84 (322)
++...+ ++.-..... ++++|+.|+.+..++ ..|..+.+.....- ..+..-..-++.+ .|.+..++
T Consensus 170 ~l~gc~--~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~ 245 (483)
T KOG4341|consen 170 ALYGCK--KITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL-QRGCKELE 245 (483)
T ss_pred hhhcce--eccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH-hccchhhh
Confidence 444444 555556666 799999999999988 88887766632110 0111111112222 22333455
Q ss_pred EEEecCCC--ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020706 85 KLCVSGLH--NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 85 ~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.+.+.||. .+..+..++.+++-+..+++..| .+||..+..++..|..|+.|..++|+.+++..+.+++++|++|+.|
T Consensus 246 ~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l 325 (483)
T KOG4341|consen 246 KLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL 325 (483)
T ss_pred hhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence 66666665 35667777777777777777777 7777777777777777777777777777777777777777777777
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh
Q 020706 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD 230 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~ 230 (322)
.+..+.. +++.++..++.++|.|+.+++.+|. +++..+..+..+||.|+.|.+++|..++.++
T Consensus 326 ~l~~c~~------fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 326 ELSGCQQ------FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred eccccch------hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 6543322 4455666677777777777777765 4444466666677777777777777666443
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.35 E-value=6.2e-12 Score=120.36 Aligned_cols=140 Identities=31% Similarity=0.359 Sum_probs=106.6
Q ss_pred HHhcCCCeeEEEecCCC--ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 020706 76 ITRSSGSLRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG 152 (322)
Q Consensus 76 ~~r~~~~l~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~ 152 (322)
....+..++.|+++++. ++..+..++..|++|+.|.+.+| .+++.++..++.+||+|++|++++|..+++.++.+++
T Consensus 238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 33445778999998765 78899999999999999998888 4899999999999999999999999999999999889
Q ss_pred hcCCCcceeeccccc-------cCCCCCCCC--chHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCC
Q 020706 153 KHCKLLVVLCRNMHP-------LDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL 215 (322)
Q Consensus 153 ~~c~~L~~L~l~~~~-------l~~~~~~~~--~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L 215 (322)
++||+|+.|.+.... +.+.++... +.....++..||+|+++.|.++.+++.+...++.+||+|
T Consensus 318 ~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 318 KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 999999888754332 112222111 244556666788888888887776666666677777766
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.33 E-value=8.3e-13 Score=84.70 Aligned_cols=46 Identities=26% Similarity=0.510 Sum_probs=40.6
Q ss_pred cccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecc
Q 020706 10 WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDI 56 (322)
Q Consensus 10 w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l 56 (322)
|..||+||+.+||++|+..|+.+ +++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~-~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLR-LSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHH-HTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHCChhhhhhhcc
Confidence 78999999999999999999998 79999999999998899998765
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.31 E-value=6.6e-12 Score=120.18 Aligned_cols=146 Identities=26% Similarity=0.332 Sum_probs=119.9
Q ss_pred hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccC-CCCCCHHH--HHHHHhcCCCcceeeccccccC
Q 020706 94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPA--LEAIGKHCKLLVVLCRNMHPLD 169 (322)
Q Consensus 94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~-c~~i~~~~--l~~l~~~c~~L~~L~l~~~~l~ 169 (322)
...+..+...+++|+.|.+.++ .+++.++..++..+++|+.|++++ |..++..+ ...+++.|++|+.|.++.+..
T Consensus 177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~- 255 (482)
T KOG1947|consen 177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL- 255 (482)
T ss_pred HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-
Confidence 4556666667999999999998 899888889999999999999998 44444433 566888999999997764432
Q ss_pred CCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh-HHHHhcCCCCeeeCC
Q 020706 170 TADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP 245 (322)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~-~~l~~~~~~Lk~L~~ 245 (322)
+++.++.+++..||+|++|.+.+|. +++.++.+++..|++|++|+|++|..++..+ ..+...|++|+.|..
T Consensus 256 -----isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 256 -----VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred -----cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 6778889999889999999998887 8999999999999999999999999885333 344677999988753
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.5e-12 Score=109.67 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=126.2
Q ss_pred CCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020706 80 SGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 157 (322)
Q Consensus 80 ~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~ 157 (322)
|.+|+.|++.|.. .|.....+|+ ..+|+.|+|+.| +++..++..+...|+.|..|+|+.|...++.+-.+++.--++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 6779999998865 5777777775 689999999998 999999999999999999999999987777766666666789
Q ss_pred cceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHH--HH
Q 020706 158 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF--MK 234 (322)
Q Consensus 158 L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~--l~ 234 (322)
|+.|+++.+.-. .....+..+++.||+|.+|+|+.|. +++ ++...+.+++.|++|.++.|..+ .... .+
T Consensus 288 l~~LNlsG~rrn-----l~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l 359 (419)
T KOG2120|consen 288 LTQLNLSGYRRN-----LQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL 359 (419)
T ss_pred hhhhhhhhhHhh-----hhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC--ChHHeeee
Confidence 999977655432 3345677788899999999999885 666 55555567999999999999988 4433 25
Q ss_pred hcCCCCeeeCC
Q 020706 235 GNFPNLKVLGP 245 (322)
Q Consensus 235 ~~~~~Lk~L~~ 245 (322)
...|.|++|..
T Consensus 360 ~s~psl~yLdv 370 (419)
T KOG2120|consen 360 NSKPSLVYLDV 370 (419)
T ss_pred ccCcceEEEEe
Confidence 67788999853
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=3.6e-11 Score=106.11 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=46.8
Q ss_pred cCCCccEEeccCCCCCCHHHHHHH---HhcCCCcceeeccccccCCCCCCCCchHHHHHHh---cCCCCCEEEecCcccC
Q 020706 128 RLSAVTFLDLSYCSKIGAPALEAI---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVIS 201 (322)
Q Consensus 128 ~~~~L~~L~l~~c~~i~~~~l~~l---~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~---~~p~L~~L~L~~~~i~ 201 (322)
.+|+|+.+.+.. +.|...++.++ ...||+|+.|++..+.++ ..+..++++ .+|+|+.|++++|.+.
T Consensus 183 ~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft-------~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 183 SHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFT-------LEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhh-------hHHHHHHHHHhcccchheeecccccccc
Confidence 345666666665 55555554333 235566666655444332 233333332 3455666666666665
Q ss_pred HHHHHHHHh----cCCCCCEEeecCCC
Q 020706 202 TEIVLKILS----SCALLEFLDLRGCW 224 (322)
Q Consensus 202 ~~~l~~i~~----~~~~L~~L~L~~c~ 224 (322)
+.+..+++. ..|.|+.|.+.+|.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcch
Confidence 555555543 34566666666664
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-10 Score=103.09 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=113.4
Q ss_pred CCCeeEEEecCCC----ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh------------cCCCccEEeccCCCCC
Q 020706 80 SGSLRKLCVSGLH----NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG------------RLSAVTFLDLSYCSKI 143 (322)
Q Consensus 80 ~~~l~~L~l~~~~----~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~------------~~~~L~~L~l~~c~~i 143 (322)
+++++.|+|+.-. .-+.+..+.++|.+|++|.|.+|++...+-..+++ .-|+|+++.... |.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccc
Confidence 4579999997522 35566677778999999999999887765544333 247899999887 777
Q ss_pred CHHHHH---HHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHh---cCCCCCE
Q 020706 144 GAPALE---AIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS---SCALLEF 217 (322)
Q Consensus 144 ~~~~l~---~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~---~~~~L~~ 217 (322)
.+.+.. ...+.+|.|+.+++..+.+...|. .-.+.++ .+||+|+.|+|..|.++..+-.+++. ..|+|+.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---~al~eal-~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---TALAEAL-EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchh---HHHHHHH-HhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 666554 445567889999886665433221 1112233 48999999999999998888777765 4478999
Q ss_pred EeecCCCCcCCCh-----HHHHhcCCCCeeeCC
Q 020706 218 LDLRGCWDVKLDD-----KFMKGNFPNLKVLGP 245 (322)
Q Consensus 218 L~L~~c~~~~~~~-----~~l~~~~~~Lk~L~~ 245 (322)
|.++.|-.-+ .+ ..+....|+|++|.+
T Consensus 246 l~l~dcll~~-~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 246 LNLGDCLLEN-EGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred eccccccccc-ccHHHHHHHHhccCCCCceecc
Confidence 9999995443 44 234667899999984
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=1.8e-09 Score=97.95 Aligned_cols=136 Identities=21% Similarity=0.166 Sum_probs=64.8
Q ss_pred CCCeeEEEecCCCC----hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHH---hcC-CCccEEeccCCCCCCHHHHHHH
Q 020706 80 SGSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIA---GRL-SAVTFLDLSYCSKIGAPALEAI 151 (322)
Q Consensus 80 ~~~l~~L~l~~~~~----~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~-~~L~~L~l~~c~~i~~~~l~~l 151 (322)
..+++.|+++++.- ...+..+... ++|++|++++|.+++.++..+. ..+ ++|+.|++++| .++..+...+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHH
Confidence 44566666665442 1222223333 4566666666666654443322 233 56666666664 4443333222
Q ss_pred ---HhcCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHHHHHHH---hcCCCCCEEeecC
Q 020706 152 ---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRG 222 (322)
Q Consensus 152 ---~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~---~~~~~L~~L~L~~ 222 (322)
...+++|+.|++..+. +.+.+...+. ..+++|++|+|++|.+++.++..+. ..+++|++|++++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 158 AKALRANRDLKELNLANNG-------IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHhCCCcCEEECcCCC-------CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 2344556666544332 2222222222 1234666666666655554433332 2445566666666
Q ss_pred CC
Q 020706 223 CW 224 (322)
Q Consensus 223 c~ 224 (322)
|.
T Consensus 231 n~ 232 (319)
T cd00116 231 NN 232 (319)
T ss_pred Cc
Confidence 53
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=1.9e-08 Score=91.11 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=106.4
Q ss_pred CCeeEEEecCCC-ChHHHHHH---HHhC-CCCCEEecCCCCCCHHHHH---HHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 020706 81 GSLRKLCVSGLH-NDMMFSLI---AENA-GSLQTLRLPRSEMSDSIVA---QIAGRLSAVTFLDLSYCSKIGAPALEAIG 152 (322)
Q Consensus 81 ~~l~~L~l~~~~-~~~~l~~l---~~~~-~~L~~L~L~~~~i~~~~l~---~l~~~~~~L~~L~l~~c~~i~~~~l~~l~ 152 (322)
+.+++|+++++. .+..+..+ ...+ ++|+.|.|.+|.++..+.. .....+++|++|++++ +.+++.++..++
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC-CCCchHHHHHHH
Confidence 669999998764 33333332 2345 8999999999988854443 3344567899999998 577777776665
Q ss_pred hcC---CCcceeeccccccCCCCCCCCchHHH---HHHhcCCCCCEEEecCcccCHHHHHHHHhcC----CCCCEEeecC
Q 020706 153 KHC---KLLVVLCRNMHPLDTADKLSQDDEAN---AIASTMPKLKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRG 222 (322)
Q Consensus 153 ~~c---~~L~~L~l~~~~l~~~~~~~~~~~~~---~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~----~~L~~L~L~~ 222 (322)
+.+ ++|+.|.++.+. +.+.++. .....+|+|++|++++|.+++.++..++..+ +.|++|++++
T Consensus 187 ~~l~~~~~L~~L~L~~n~-------i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 187 EGLKANCNLEVLDLNNNG-------LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHhCCCCCEEeccCCc-------cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 444 589999765443 3334333 2334688999999999999998888887765 7999999999
Q ss_pred CCCcCCCh-HHH---HhcCCCCeeeCC
Q 020706 223 CWDVKLDD-KFM---KGNFPNLKVLGP 245 (322)
Q Consensus 223 c~~~~~~~-~~l---~~~~~~Lk~L~~ 245 (322)
|. ++..+ ..+ ...+++|+++..
T Consensus 260 n~-i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 260 ND-ITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred CC-CCcHHHHHHHHHHhcCCCccEEEC
Confidence 95 43222 222 344466777644
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.3e-09 Score=97.33 Aligned_cols=164 Identities=23% Similarity=0.178 Sum_probs=106.7
Q ss_pred CCCeeEEEecCC--CChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020706 80 SGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 157 (322)
Q Consensus 80 ~~~l~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~ 157 (322)
+++++.|+|++- .+...+..+++.+|+|+.|+|+.|.+....-......++.|+.|.|+.| +++.+.+..++..||+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPS 223 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCc
Confidence 677888888763 3566777788899999999999883321111111114588999999998 7789999999999999
Q ss_pred cceeecccc-----------------ccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHH-----HHHhcCCCC
Q 020706 158 LVVLCRNMH-----------------PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL-----KILSSCALL 215 (322)
Q Consensus 158 L~~L~l~~~-----------------~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~-----~i~~~~~~L 215 (322)
|+.|.+..+ .+++++....+........++|+|+.|+++.+.|++-... .....+|+|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 999976433 2344444444444334444788888888888876554332 335567889
Q ss_pred CEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020706 216 EFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 216 ~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
++|++..+.......-.-.+..++|+.|.
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhh
Confidence 99998887543111111134445555554
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=1.8e-09 Score=88.97 Aligned_cols=127 Identities=26% Similarity=0.328 Sum_probs=49.2
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020706 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
+.++++|+|.++.|+. +..+...+.+|+.|++++ +.++. +..+ ..+++|+.|.++.+.+.. - ...+
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~-N~I~~--l~~l-~~L~~L~~L~L~~N~I~~-------i-~~~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSN-NQITK--LEGL-PGLPRLKTLDLSNNRISS-------I-SEGL 83 (175)
T ss_dssp --------------------S--TT-TT--EEE-TT-S--S----TT-----TT--EEE--SS---S---------CHHH
T ss_pred cccccccccccccccc--ccchhhhhcCCCEEECCC-CCCcc--ccCc-cChhhhhhcccCCCCCCc-------c-ccch
Confidence 4467888888886654 445555668888888887 45543 2222 235778888776655421 1 1234
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020706 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG 244 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~ 244 (322)
.+.+|+|++|.|++|.|.+-.-...+..||+|+.|+|.+|+...... ..+...+|+|+.|+
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 34689999999999987664334445679999999999998664333 45678999999994
No 14
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.75 E-value=3e-09 Score=68.37 Aligned_cols=44 Identities=27% Similarity=0.490 Sum_probs=36.9
Q ss_pred CcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceee
Q 020706 9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQE 53 (322)
Q Consensus 9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~ 53 (322)
.|.+||+|++.+||++|+..+++. +++|||+|+.++.++.+|.+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~-l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLR-LSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHH-HCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHH-HHHHhhHHHHHHcCCCccHH
Confidence 588999999999999999999998 79999999999998777653
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.69 E-value=2e-08 Score=62.02 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=37.3
Q ss_pred CCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceee
Q 020706 13 LIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQE 53 (322)
Q Consensus 13 LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~ 53 (322)
||+|++..||.+++..++.+ +++|||+|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~-~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLR-LRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcChhhhhc
Confidence 79999999999999999998 79999999999998888864
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.65 E-value=5.2e-08 Score=96.61 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=108.4
Q ss_pred HhcCCCeeEEEecCCC--ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhc
Q 020706 77 TRSSGSLRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH 154 (322)
Q Consensus 77 ~r~~~~l~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~ 154 (322)
..+..+|++|+++|-. .......++..+|+|++|.+.+-.+...-+..+...+|||.+||+|+ +++++- . -...
T Consensus 118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl--~-GIS~ 193 (699)
T KOG3665|consen 118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL--S-GISR 193 (699)
T ss_pred HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc--H-HHhc
Confidence 3456789999998743 45677888899999999999998776666999999999999999999 456543 1 2234
Q ss_pred CCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHH---hcCCCCCEEeecCCCCcCCC
Q 020706 155 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKIL---SSCALLEFLDLRGCWDVKLD 229 (322)
Q Consensus 155 c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~---~~~~~L~~L~L~~c~~~~~~ 229 (322)
+++|+.|.+..-.+ .....+..+. .+.+|+.|+++...-.... +...+ ..+|+|+.||.+|.. + +
T Consensus 194 LknLq~L~mrnLe~------e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i--~ 263 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEF------ESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-I--N 263 (699)
T ss_pred cccHHHHhccCCCC------CchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-h--h
Confidence 57788776543322 1124566676 7999999999986432222 33333 256999999998643 3 3
Q ss_pred h---HHHHhcCCCCeeeCC
Q 020706 230 D---KFMKGNFPNLKVLGP 245 (322)
Q Consensus 230 ~---~~l~~~~~~Lk~L~~ 245 (322)
. ..+....|+|+.+..
T Consensus 264 ~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 264 EEILEELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHHHHHHhCccHhhhhh
Confidence 3 345667788887753
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.6e-08 Score=90.63 Aligned_cols=115 Identities=22% Similarity=0.095 Sum_probs=67.0
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020706 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
+..+|+.+.|.++.+...+....++.||+++.|+|+..-.-....+..++..+|+|+.|+++.+.+...--...+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~----- 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT----- 193 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-----
Confidence 355666677776666665555566667777777777632333455666666777777776655544221111100
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
..+++|+.|.|++|.++-..+..++..||.|+.|.|.++.
T Consensus 194 --~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 194 --LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred --hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 1455666666666666666666666666666666666653
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1e-07 Score=78.49 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=53.6
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020706 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.++.|++.+..-. .+..+...+.+|+.|+|++|.|+.- ..+ ..+++|+.|++++ +.++.-+ ..+.+.||+|++|
T Consensus 20 ~~~~L~L~~n~I~-~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l-~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIENLGATLDKLEVLDLSNNQITKL--EGL-PGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--EE
T ss_pred ccccccccccccc-cccchhhhhcCCCEEECCCCCCccc--cCc-cChhhhhhcccCC-CCCCccc-cchHHhCCcCCEE
Confidence 4678888875322 2334444578999999999977642 222 3469999999998 8887532 2344678999999
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHHhcCCCCCEEeecCC
Q 020706 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~~~~~~L~~L~L~~c 223 (322)
.++.+.+.- -..+..+. .+|+|+.|+|.+|.++... =..++..+|+|+.||-...
T Consensus 94 ~L~~N~I~~------l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISD------LNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---S------CCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCC------hHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 887665421 11234444 7999999999999876543 2345668999999997653
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.34 E-value=1e-06 Score=92.06 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=64.1
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020706 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
.+++|+.|+|++|.++...- ...+++|++|+|++ +.++......+ ..+++|+.|++..+.+ .......
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~-n~~~~~~p~~~-~~l~~L~~L~L~~n~l-------~~~~p~~ 183 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSN-NMLSGEIPNDI-GSFSSLKVLDLGGNVL-------VGKIPNS 183 (968)
T ss_pred cCCCCCEEECcCCccccccC---ccccCCCCEEECcC-CcccccCChHH-hcCCCCCEEECccCcc-------cccCChh
Confidence 45555555555554332110 01245566666665 23332222222 3456666665543322 1111122
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020706 183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
+. .+++|++|+|++|.++... ...+..+++|+.|+|++|.... ........+++|++|.+
T Consensus 184 ~~-~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 184 LT-NLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDL 243 (968)
T ss_pred hh-hCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEEC
Confidence 33 5777777777777654332 2233467788888887775332 11222356777777754
No 20
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.32 E-value=5.5e-08 Score=83.21 Aligned_cols=67 Identities=30% Similarity=0.332 Sum_probs=53.3
Q ss_pred hHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020706 178 DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG 244 (322)
Q Consensus 178 ~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~ 244 (322)
.++..++..+|+|++|++++|+|.+-.-..-+...++|..|++.+|....+++ ..+...+|+|++|.
T Consensus 81 ~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 81 GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 34556677789999999999998864444556678899999999998776655 56778899999994
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=2.1e-06 Score=74.11 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=56.9
Q ss_pred CCCCCEEecCCCCCC---HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH----hcCCCcceeeccccccCCCCCCCC
Q 020706 104 AGSLQTLRLPRSEMS---DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG----KHCKLLVVLCRNMHPLDTADKLSQ 176 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~---~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~----~~c~~L~~L~l~~~~l~~~~~~~~ 176 (322)
-|.|+++...+|++. ........+.-.+|+.+.+.. +.|.++++..++ ..|.+|+.|.+..++++..|
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g---- 230 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG---- 230 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh----
Confidence 455555555555322 122222222224667777766 666666554332 25666666655444443222
Q ss_pred chHHHHHH---hcCCCCCEEEecCcccCHHHHHHHHhc-----CCCCCEEeecCC
Q 020706 177 DDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGC 223 (322)
Q Consensus 177 ~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~~~-----~~~L~~L~L~~c 223 (322)
...++ +..|.|+.|++..|-++..++.++++. .|+|..|-...+
T Consensus 231 ---S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 231 ---SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ---HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 22222 245566777777776666666655543 356666655443
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.18 E-value=3.2e-07 Score=86.53 Aligned_cols=128 Identities=21% Similarity=0.168 Sum_probs=85.3
Q ss_pred hCCCCCEEecCCCCC---CHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchH
Q 020706 103 NAGSLQTLRLPRSEM---SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i---~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~ 179 (322)
.|++|+.|+|++|.| ....+..+ ..|++|+|+. +.++.-.- ....+.++|+.|++..+.+.. | ..++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~ls~--~--IEDa 384 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNELSW--C--IEDA 384 (873)
T ss_pred hcccceeEeccccccccCChhHHHHH----HHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCeEEE--E--Eecc
Confidence 488999999998854 44555444 7789999987 66654322 223456889999887665532 1 2334
Q ss_pred HHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020706 180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 180 ~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
+.++ +.+|.|+.|.|.||++....-.+ +.+++.||+|+|.++..-+.....+. .. +||.|-
T Consensus 385 a~~f-~gl~~LrkL~l~gNqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe-~m-~Lk~Lv 445 (873)
T KOG4194|consen 385 AVAF-NGLPSLRKLRLTGNQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFE-PM-ELKELV 445 (873)
T ss_pred hhhh-ccchhhhheeecCceeeecchhh-hccCcccceecCCCCcceeecccccc-cc-hhhhhh
Confidence 4444 47999999999999865443333 45899999999999876554443332 22 666664
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=3.3e-06 Score=84.01 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=88.7
Q ss_pred CCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020706 104 AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 104 ~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
-.+|++|++++. .+...-...+...+|.|++|.+++ ..+...-+..+.+++|+|..|+++.+. +.+- ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-------I~nl--~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-------ISNL--SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-------ccCc--HH
Confidence 457888888887 555556667777888888888888 455555688888888888888655443 3222 33
Q ss_pred HHhcCCCCCEEEecCcccCH-HHHHHHHhcCCCCCEEeecCCCCcCCChHHH------HhcCCCCeeeC
Q 020706 183 IASTMPKLKRLEMAYHVIST-EIVLKILSSCALLEFLDLRGCWDVKLDDKFM------KGNFPNLKVLG 244 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~-~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l------~~~~~~Lk~L~ 244 (322)
+. .+++|+.|.+.+-.+.. ..+..++ .+++|++||+|.-...... ..+ ...+|+|+.|+
T Consensus 191 IS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 191 IS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred Hh-ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccch-HHHHHHHHhcccCccccEEe
Confidence 43 78888888888877665 4455555 6899999999886655322 111 35578888884
No 24
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.14 E-value=3.3e-06 Score=88.19 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=39.7
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020706 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..|+.|+++++.-...+......+++|+.|+|.+|.++...... ...+++|++|++++| .++......+ ..+++|+.
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPREL-GQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCChHH-cCcCCccE
Confidence 45777888765322122222345677777777777544321112 234566667766663 3332222222 23455555
Q ss_pred eecc
Q 020706 161 LCRN 164 (322)
Q Consensus 161 L~l~ 164 (322)
|.++
T Consensus 217 L~L~ 220 (968)
T PLN00113 217 IYLG 220 (968)
T ss_pred EECc
Confidence 5543
No 25
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.89 E-value=0.0003 Score=61.08 Aligned_cols=90 Identities=13% Similarity=0.212 Sum_probs=47.6
Q ss_pred eeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCCC----hH---HHH---HHHHhCCCCCEEecCCCCCC---
Q 020706 52 QEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHN----DM---MFS---LIAENAGSLQTLRLPRSEMS--- 118 (322)
Q Consensus 52 ~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~----~~---~l~---~l~~~~~~L~~L~L~~~~i~--- 118 (322)
..++++.+.. ..+....+...+.. ..+|+..+++...+ +. .+. ...-.||+|+.++|+.|-+.
T Consensus 33 ~evdLSGNti--gtEA~e~l~~~ia~--~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 33 VEVDLSGNTI--GTEAMEELCNVIAN--VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred eEEeccCCcc--cHHHHHHHHHHHhh--hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4566665433 34444444443322 34466666654221 11 122 22235888888888887332
Q ss_pred HHHHHHHHhcCCCccEEeccCCCCCCHH
Q 020706 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAP 146 (322)
Q Consensus 119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~ 146 (322)
..-+..+.++..+|++|.+++ +++++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~N-nGlGp~ 135 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNN-NGLGPI 135 (388)
T ss_pred chHHHHHHhcCCCceeEEeec-CCCCcc
Confidence 334445555667788888887 455543
No 26
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.7e-05 Score=65.65 Aligned_cols=59 Identities=27% Similarity=0.312 Sum_probs=30.2
Q ss_pred CCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeec
Q 020706 104 AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 163 (322)
Q Consensus 104 ~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l 163 (322)
++.|+.|.+.+| .+.|.++..+..-.|+|+.|+|++|..||+.++.-+.+ +++|+.|.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l 183 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHL 183 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHh
Confidence 444555555555 55555555555545555555555555555555544443 244444443
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.74 E-value=6.1e-05 Score=80.01 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.7
Q ss_pred cCCCCCEEEecCc
Q 020706 186 TMPKLKRLEMAYH 198 (322)
Q Consensus 186 ~~p~L~~L~L~~~ 198 (322)
.+++|++|+|++|
T Consensus 800 ~L~~L~~L~Ls~C 812 (1153)
T PLN03210 800 NLHKLEHLEIENC 812 (1153)
T ss_pred CCCCCCEEECCCC
Confidence 3455555555554
No 28
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=7.4e-06 Score=71.00 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020706 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
..+.+.|++.+|+++|. .++.++|.|+.|.|+- |.|+. |. .+
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSv-NkIss------------L~----------------------pl 59 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSV-NKISS------------LA----------------------PL 59 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeec-ccccc------------ch----------------------hH
Confidence 45778899999999887 4556789999999986 66642 11 11
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh----HHHHhcCCCCeeeC
Q 020706 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD----KFMKGNFPNLKVLG 244 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~----~~l~~~~~~Lk~L~ 244 (322)
..|.+|++|.|..|.|.+-.-.+.+.++|+|+.|.|..++-....+ ..+++.+|+||.|+
T Consensus 60 -~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 60 -QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2566666666666666665555556666777776666554443223 23456667777764
No 29
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.70 E-value=8.9e-06 Score=77.09 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=14.1
Q ss_pred CCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020706 189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 189 ~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c 223 (322)
+|..|.|+.|.|+.-.. .+++.+|+|++|+|..+
T Consensus 198 sL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRN 231 (873)
T ss_pred hheeeecccCcccccCH-HHhhhcchhhhhhcccc
Confidence 44444444444433221 22333445555555443
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.64 E-value=5.1e-05 Score=80.56 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=27.3
Q ss_pred CCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020706 187 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 227 (322)
Q Consensus 187 ~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~ 227 (322)
.++|+.|+|+++.++. +..-+..+++|+.|+|++|.++.
T Consensus 845 ~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 845 STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcC
Confidence 3578888888877653 22234578888888888887764
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=4.3e-05 Score=66.99 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=60.4
Q ss_pred HhcCCCeeEEEecCC--CChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhc
Q 020706 77 TRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH 154 (322)
Q Consensus 77 ~r~~~~l~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~ 154 (322)
...+..++.+++.+- ...+-+..|.+++|.|+.|+|+.|.++.. +..+.....+|++|-|++ +.++......+.+.
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDD 144 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-CCCChhhhhhhhhc
Confidence 334455777777653 24566777778888888888888855433 222322346888888888 78888888888888
Q ss_pred CCCcceeecccc
Q 020706 155 CKLLVVLCRNMH 166 (322)
Q Consensus 155 c~~L~~L~l~~~ 166 (322)
.|.++.|+++.+
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 888888877654
No 32
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=8.6e-05 Score=61.58 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=60.2
Q ss_pred CCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhc
Q 020706 107 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 186 (322)
Q Consensus 107 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~ 186 (322)
++.++-+++.|..+|+..+ ..++.|+.|.+..|..+.+-++..++. -
T Consensus 103 IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~--------------------------------~ 149 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGG--------------------------------L 149 (221)
T ss_pred EEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcc--------------------------------c
Confidence 4555556666777777766 345777777777776666666555544 4
Q ss_pred CCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh---HHHHhcCCCCeeeCC
Q 020706 187 MPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKVLGP 245 (322)
Q Consensus 187 ~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~---~~l~~~~~~Lk~L~~ 245 (322)
.|+|+.|+|++|. ||+.++.-+. .+++|+.|.|++-..+..-+ ..+...+|++++...
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred ccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 4566666666553 5555554433 45666666665544443211 234556666666544
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.51 E-value=4.7e-05 Score=75.74 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=33.9
Q ss_pred HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020706 182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 227 (322)
Q Consensus 182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~ 227 (322)
.++ .+|.|+.++++.|.++.-.+.+.+.. |+|++||++|+....
T Consensus 447 e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 447 ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 444 68899999999999877665544432 899999999987553
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.25 E-value=0.0001 Score=64.83 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=45.1
Q ss_pred CCCcccCCHHHHHHHHcc-----CChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccc
Q 020706 7 FRHWDELIPDALGLIFRN-----LSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSN 61 (322)
Q Consensus 7 ~~~w~~LP~eiL~~IF~~-----L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~ 61 (322)
...+..||+|||..||+. +++.++.. ++.|||.|+..+++|.+|+..-+..|..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~-~s~vCr~F~~~~R~~~lwR~aC~KvW~~ 162 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQ-LSLVCRGFYKCARDPELWRLACLKVWQR 162 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHH-hHhhHHHHHHHHcChHHHHHHHHHHHHH
Confidence 345678999999999984 55677777 7999999999999999999887776643
No 35
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.24 E-value=0.0004 Score=38.05 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHh
Q 020706 129 LSAVTFLDLSYCSKIGAPALEAIGK 153 (322)
Q Consensus 129 ~~~L~~L~l~~c~~i~~~~l~~l~~ 153 (322)
||+|++|+|++|..+++.++.++++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5778888888888888888877764
No 36
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.21 E-value=2.8e-05 Score=74.49 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=24.5
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020706 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
++++|+.|+|++|.|+.-.+. ...-.+|++|+|+++..+
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLT 281 (1255)
T ss_pred hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhc
Confidence 577899999999887643211 112246777777766544
No 37
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.07 E-value=0.00048 Score=63.16 Aligned_cols=39 Identities=31% Similarity=0.607 Sum_probs=34.7
Q ss_pred CCCcccCCHHHHHHHHccC-ChHHHhhhhhhhhHHHHHHhc
Q 020706 7 FRHWDELIPDALGLIFRNL-SLQEVLTVIPGVCKSWRRAVI 46 (322)
Q Consensus 7 ~~~w~~LP~eiL~~IF~~L-~~~~~l~~~~~VCk~W~~~~~ 46 (322)
+..|++||+|+|..|.++| ...|+++ .+.||+.||..+.
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~-~~~vC~sWr~a~~ 40 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKR-FRSICRSWRSSVS 40 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHH-HHhhhhhHHHhcc
Confidence 3679999999999999999 5668888 6999999999876
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.01 E-value=0.00017 Score=63.42 Aligned_cols=124 Identities=22% Similarity=0.131 Sum_probs=76.1
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020706 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
.+..|++|+|++|.|+. +..-.+-.|.++.|++++ +.+..-+- .+.+++|+.|+++.+.+ .....
T Consensus 282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~-N~i~~v~n---La~L~~L~~LDLS~N~L---------s~~~G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQ-NRIRTVQN---LAELPQLQLLDLSGNLL---------AECVG 346 (490)
T ss_pred hHhhhhhccccccchhh--hhhhhhhccceeEEeccc-cceeeehh---hhhcccceEeecccchh---------Hhhhh
Confidence 35678899999986652 122223349999999998 66654322 23468899998776654 11222
Q ss_pred HHhcCCCCCEEEecCcccCHH-HHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020706 183 IASTMPKLKRLEMAYHVISTE-IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~-~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
....+-|++.|.|++|.|.+- ++ .++-.|..||++++..-.++.....-.+|-|.+|.+
T Consensus 347 wh~KLGNIKtL~La~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETLSGL----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhhhhh----HhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 334567888999988875432 22 244578888998875433333333345566666643
No 39
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.95 E-value=0.00016 Score=69.44 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH-----HH-----------HhcCCCCCEE
Q 020706 130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN-----AI-----------ASTMPKLKRL 193 (322)
Q Consensus 130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~-----~l-----------~~~~p~L~~L 193 (322)
.+|++|++|. +.++ ++.+..-.+++|+.|.++.+.+++.|.+....-+. .. ...|++|+.|
T Consensus 268 ~~lEtLNlSr-NQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 268 ENLETLNLSR-NQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhhhhhcccc-chhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence 4455555554 3332 12222223577888888888888877643222111 11 1257888888
Q ss_pred EecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCC
Q 020706 194 EMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKL 228 (322)
Q Consensus 194 ~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~ 228 (322)
.|+.|. ||-. .-+.-+|.|+.||+..++++-+
T Consensus 345 ~L~~NrLiTLP---eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 345 KLDHNRLITLP---EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cccccceeech---hhhhhcCCcceeeccCCcCccC
Confidence 888886 3322 2223467888888888877654
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.00038 Score=61.17 Aligned_cols=149 Identities=22% Similarity=0.294 Sum_probs=95.6
Q ss_pred eeEEEecCCC--ChHHHHHHHHhCCCCCEEecCCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020706 83 LRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 83 l~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
++-+.+.++. +......++..+..++.++|.+|.|++ .-+.++..++|.|++|+|+ |+.++.. +..+.....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~-I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSD-IKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCc-cccCcccccceE
Confidence 3344555543 455677788889999999999998876 4577888999999999999 4776532 222223346788
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc---c--CHHHHHHHHhcCCCCCEEeecCCCCcCCCh-HHH
Q 020706 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV---I--STEIVLKILSSCALLEFLDLRGCWDVKLDD-KFM 233 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~---i--~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~-~~l 233 (322)
.|-++...+.+ .........+|+++.|+++.|. + .+.... ..-+.+.+|.+.+|....... ..+
T Consensus 125 ~lVLNgT~L~w-------~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 125 VLVLNGTGLSW-------TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred EEEEcCCCCCh-------hhhhhhhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhH
Confidence 88887766543 3344555678888888888773 1 111111 123567777777775332111 234
Q ss_pred HhcCCCCeee
Q 020706 234 KGNFPNLKVL 243 (322)
Q Consensus 234 ~~~~~~Lk~L 243 (322)
.+.+|++..+
T Consensus 195 ~r~Fpnv~sv 204 (418)
T KOG2982|consen 195 SRIFPNVNSV 204 (418)
T ss_pred Hhhcccchhe
Confidence 5677777765
No 41
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.81 E-value=0.00019 Score=71.52 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=82.8
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020706 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.+.|+.|.+.+|.++|..+..+ .+++.|+.|+|++ +.++.-.... ...++.|+.|.++.+.+. .-...+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsy-NrL~~fpas~-~~kle~LeeL~LSGNkL~--------~Lp~tv 426 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSY-NRLNSFPASK-LRKLEELEELNLSGNKLT--------TLPDTV 426 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhh-ccccceeeeeecc-cccccCCHHH-HhchHHhHHHhcccchhh--------hhhHHH
Confidence 4567888888999999888766 4669999999998 5544221122 234577888877655541 112344
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcC--CCCeeeCC
Q 020706 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF--PNLKVLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~--~~Lk~L~~ 245 (322)
+ .|+.|++|...+|.+..- .+++ ..++|+++||+.+. + +...+.... |+||+|++
T Consensus 427 a-~~~~L~tL~ahsN~l~~f--Pe~~-~l~qL~~lDlS~N~-L--~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 427 A-NLGRLHTLRAHSNQLLSF--PELA-QLPQLKVLDLSCNN-L--SEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred H-hhhhhHHHhhcCCceeec--hhhh-hcCcceEEecccch-h--hhhhhhhhCCCcccceeec
Confidence 4 788999999998875432 2334 68999999999764 5 222332233 68999975
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.67 E-value=0.001 Score=58.61 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=80.3
Q ss_pred eeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceee
Q 020706 83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 162 (322)
Q Consensus 83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~ 162 (322)
++.+++++-.. .-+..-.+-.|.++.|.+++|+++..+ .+ +.+++|+.|+|++ +.++. +..+-..+-+++.|.
T Consensus 286 LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~--nL-a~L~~L~~LDLS~-N~Ls~--~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 286 LTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQ--NL-AELPQLQLLDLSG-NLLAE--CVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhccccccch-hhhhhhhhhccceeEEeccccceeeeh--hh-hhcccceEeeccc-chhHh--hhhhHhhhcCEeeee
Confidence 55566665321 111111233689999999999765432 22 3469999999998 55543 333334456788887
Q ss_pred ccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020706 163 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 227 (322)
Q Consensus 163 l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~ 227 (322)
+..+.+ +.+..+. .+-+|..|++++|+|..-.-..-+.++|-|++|.|.+++...
T Consensus 359 La~N~i---------E~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKI---------ETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhH---------hhhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 654433 2223333 455788899999987664444445578999999998887443
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.59 E-value=0.0014 Score=58.45 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=41.3
Q ss_pred ccCC----HHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccc
Q 020706 11 DELI----PDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE 57 (322)
Q Consensus 11 ~~LP----~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~ 57 (322)
..|| ++|...||+||+..++.. |-.|||+|+.+..+|.+|+++.-.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~-celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCA-CELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHhccchHHHHHHHH
Confidence 4589 999999999999999998 899999999999999999877433
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.53 E-value=0.00024 Score=47.73 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=22.4
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+++|++|+|++|.++.-. ...+.++++|++|++++|.
T Consensus 23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 5667777777766654221 1234566777777776663
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.52 E-value=0.00024 Score=69.33 Aligned_cols=107 Identities=25% Similarity=0.294 Sum_probs=63.2
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020706 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.+.|++|+|++|++++.. ....|+.|++|+|++ |.++.-.-..+ .+|+ |..|.+.++.+ ..+..|
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsy-N~L~~vp~l~~-~gc~-L~~L~lrnN~l---------~tL~gi 250 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSY-NCLRHVPQLSM-VGCK-LQLLNLRNNAL---------TTLRGI 250 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHhccccccccccc-chhccccccch-hhhh-heeeeecccHH---------HhhhhH
Confidence 456667777776655432 334566777777766 44432111111 1222 55554443322 223444
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020706 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
. ++.+|+.|++++|-+.+-.-...+-.+..|..|.|.||+.-
T Consensus 251 e-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 E-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred H-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4 78899999999998776655555666778888999888643
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.52 E-value=0.0026 Score=39.69 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
|+|++|+|++|.|++ +...+.++++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578999999998875 33336689999999999985
No 47
>PLN03150 hypothetical protein; Provisional
Probab=96.50 E-value=0.0048 Score=61.42 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=8.1
Q ss_pred cCCCCCEEEecCcccC
Q 020706 186 TMPKLKRLEMAYHVIS 201 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~ 201 (322)
.+++|+.|+|++|.++
T Consensus 488 ~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 488 QLTSLRILNLNGNSLS 503 (623)
T ss_pred cCCCCCEEECcCCccc
Confidence 4455555555555443
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.00027 Score=60.82 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=72.4
Q ss_pred HHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchH
Q 020706 100 IAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179 (322)
Q Consensus 100 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~ 179 (322)
+.....+|+.|++.++.++. +..+ ..+|+|+.|.++..+.-...++..++..||+|++|.++.+.++. -+.
T Consensus 38 l~d~~~~le~ls~~n~gltt--~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~------lst 108 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT--LTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD------LST 108 (260)
T ss_pred ccccccchhhhhhhccceee--cccC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc------ccc
Confidence 34445566666666664332 1111 23589999999973333456678888888999999887665532 122
Q ss_pred HHHHHhcCCCCCEEEecCcccCH--HHHHHHHhcCCCCCEEeecCCC
Q 020706 180 ANAIASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 180 ~~~l~~~~p~L~~L~L~~~~i~~--~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
+..+ +.+++|..|++..|.++. ..=..++.-+|+|+.|+-..+.
T Consensus 109 l~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 109 LRPL-KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchh-hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 2333 367899999999986443 1223455567899988875543
No 49
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.38 E-value=0.005 Score=33.58 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCCCCEEecCCC-CCCHHHHHHHHh
Q 020706 104 AGSLQTLRLPRS-EMSDSIVAQIAG 127 (322)
Q Consensus 104 ~~~L~~L~L~~~-~i~~~~l~~l~~ 127 (322)
|++|+.|+|.+| .|||.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 689999999999 899999998874
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.03 E-value=0.00071 Score=45.41 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=12.6
Q ss_pred hcCCCCCEEEecCccc
Q 020706 185 STMPKLKRLEMAYHVI 200 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i 200 (322)
..+|+|++|++++|.|
T Consensus 46 ~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 46 SNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTSTTESEEEETSSSB
T ss_pred cCCCCCCEEeCcCCcC
Confidence 4788888888888764
No 51
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.02 E-value=0.0063 Score=32.41 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.4
Q ss_pred CCCCCEEEecCcccCHHHHHHHH
Q 020706 187 MPKLKRLEMAYHVISTEIVLKIL 209 (322)
Q Consensus 187 ~p~L~~L~L~~~~i~~~~l~~i~ 209 (322)
|++|++|+|++|.|+++++.+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57899999999999999888775
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.96 E-value=0.005 Score=51.34 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=44.4
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020706 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
.+...++|+.+.+-. .....++++|..|.++. +.|+.- -..+....|+|+.|.+..+.+ ..-..+..++
T Consensus 42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~n-NrIt~I-~p~L~~~~p~l~~L~LtnNsi------~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNN-NRITRI-DPDLDTFLPNLKTLILTNNSI------QELGDLDPLA 110 (233)
T ss_pred cccceecccccchhh---cccCCCccccceEEecC-Ccceee-ccchhhhccccceEEecCcch------hhhhhcchhc
Confidence 345555555542211 11223446666666665 555421 112223335555554433222 0001122233
Q ss_pred hcCCCCCEEEecCcccCHHHHH--HHHhcCCCCCEEeecC
Q 020706 185 STMPKLKRLEMAYHVISTEIVL--KILSSCALLEFLDLRG 222 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~--~i~~~~~~L~~L~L~~ 222 (322)
.||+|+.|.+-+|.++...-. .++..+|+|+.||..+
T Consensus 111 -~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 -SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 455555555555554433211 1222445555555543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.90 E-value=0.0067 Score=37.79 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCC
Q 020706 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG 144 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 144 (322)
++|+.|.+++|.|++ +......+++|+.|++++ +.++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~-N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSN-NPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETS-SCCS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecC-CCCC
Confidence 478888888887775 344346788888888888 4554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.83 E-value=0.0032 Score=52.49 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=56.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020706 130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 209 (322)
Q Consensus 130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~ 209 (322)
.+...++|++ +.+... ......++|..|.++.+.+. .-...+...+|+|+.|.|.+|.|-.-+=..-+
T Consensus 42 d~~d~iDLtd-Ndl~~l---~~lp~l~rL~tLll~nNrIt--------~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTD-NDLRKL---DNLPHLPRLHTLLLNNNRIT--------RIDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred cccceecccc-cchhhc---ccCCCccccceEEecCCcce--------eeccchhhhccccceEEecCcchhhhhhcchh
Confidence 5566677766 333211 11123456666666555442 11123344567777777777765554433444
Q ss_pred hcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeCC
Q 020706 210 SSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 245 (322)
Q Consensus 210 ~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~~ 245 (322)
..||+|++|.+-+++...... ..+....|+|++|++
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 567777777777765443222 224566777777754
No 55
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.37 E-value=0.00031 Score=57.03 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=58.1
Q ss_pred CCCCCEEecCCCCCCH--HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020706 104 AGSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 181 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~ 181 (322)
..+++.|.|+++.++- .++.. +.+|+.|++++ +.+..- ... ...+|+|+.|++.++.+... ..+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~----l~nlevln~~n-nqie~l-p~~-issl~klr~lnvgmnrl~~l-----prg-- 97 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAE----LKNLEVLNLSN-NQIEEL-PTS-ISSLPKLRILNVGMNRLNIL-----PRG-- 97 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHH----hhhhhhhhccc-chhhhc-Chh-hhhchhhhheecchhhhhcC-----ccc--
Confidence 3456666777764432 22222 36777777776 555321 112 23457777777766554321 111
Q ss_pred HHHhcCCCCCEEEecCcccCHH----------HHHHH-------------HhcCCCCCEEeecCCCCcCC
Q 020706 182 AIASTMPKLKRLEMAYHVISTE----------IVLKI-------------LSSCALLEFLDLRGCWDVKL 228 (322)
Q Consensus 182 ~l~~~~p~L~~L~L~~~~i~~~----------~l~~i-------------~~~~~~L~~L~L~~c~~~~~ 228 (322)
+ .++|.|+.|+|++|+++.. .+.++ +.++.+|+.|.++.+..++.
T Consensus 98 -f-gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 98 -F-GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred -c-CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence 1 2566677777766543222 22222 23467888888888776653
No 56
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.30 E-value=0.043 Score=55.65 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.4
Q ss_pred CCCCCEEEecCcccCH
Q 020706 187 MPKLKRLEMAYHVIST 202 (322)
Q Consensus 187 ~p~L~~L~L~~~~i~~ 202 (322)
.|+|+.|+|++|.++.
T Consensus 301 p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 301 PPGLQELSVSDNQLAS 316 (788)
T ss_pred ccccceeECCCCcccc
Confidence 4789999998887653
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.29 E-value=0.0062 Score=59.82 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=8.8
Q ss_pred CCCCCEEecCCCCC
Q 020706 104 AGSLQTLRLPRSEM 117 (322)
Q Consensus 104 ~~~L~~L~L~~~~i 117 (322)
+.+|+.|.|.+|.+
T Consensus 108 F~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDL 121 (1096)
T ss_pred ccceeeEEecCcch
Confidence 55666677766643
No 58
>PLN03150 hypothetical protein; Provisional
Probab=95.28 E-value=0.036 Score=55.24 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=67.5
Q ss_pred eeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceee
Q 020706 83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 162 (322)
Q Consensus 83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~ 162 (322)
++.|+|++..-...+..-...+++|+.|+|++|.++.. +......+++|+.|+|++ +.++......++ .+++|+.|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~-N~lsg~iP~~l~-~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSY-NSFNGSIPESLG-QLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCC-CCCCCCCchHHh-cCCCCCEEE
Confidence 67788866432212222234689999999999977643 223345679999999998 566654444443 679999998
Q ss_pred ccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc
Q 020706 163 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV 199 (322)
Q Consensus 163 l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~ 199 (322)
++.+.+. | .....+.....++..+++.+|.
T Consensus 497 Ls~N~l~--g-----~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLS--G-----RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCccc--c-----cCChHHhhccccCceEEecCCc
Confidence 8766442 2 1112233234567788888774
No 59
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.89 E-value=0.02 Score=30.45 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=11.2
Q ss_pred CCccEEeccCCCCCCHHHHHHHH
Q 020706 130 SAVTFLDLSYCSKIGAPALEAIG 152 (322)
Q Consensus 130 ~~L~~L~l~~c~~i~~~~l~~l~ 152 (322)
++|++|+|++| .+++.++.+|+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHhC
Confidence 55666666653 45666555554
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.017 Score=50.68 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=76.4
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020706 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.++.|+..||.-+.+ .|...+|.|+.|.|+-|.|+. +.. ..+|++|+.|.|.. |.|.+-.-.+-.+++|+|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence 467888888753222 235679999999999987753 333 35789999999998 777765555556788999999
Q ss_pred eccccccCCCCCCCCchHH-HHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020706 162 CRNMHPLDTADKLSQDDEA-NAIASTMPKLKRLEMAYHVISTEIVLKIL 209 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~-~~l~~~~p~L~~L~L~~~~i~~~~l~~i~ 209 (322)
.+..++....+ .... ..+...+|||+.|+ +-.++.+.+..-+
T Consensus 94 WL~ENPCc~~a----g~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL 136 (388)
T KOG2123|consen 94 WLDENPCCGEA----GQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL 136 (388)
T ss_pred hhccCCccccc----chhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence 88655542111 1111 23345799999884 3345665555444
No 61
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.43 E-value=0.015 Score=58.96 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=18.4
Q ss_pred CCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 189 ~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
+|+.|++++|.++. +..-+..+++|+.|+|++|.
T Consensus 423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCcccc--cChHHhhccCCCeEECCCCC
Confidence 45555555555442 22223356677777777764
No 62
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.37 E-value=0.057 Score=29.92 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCEEEecCcccCHHHHHHHHhcC
Q 020706 188 PKLKRLEMAYHVISTEIVLKILSSC 212 (322)
Q Consensus 188 p~L~~L~L~~~~i~~~~l~~i~~~~ 212 (322)
++|++|+|++|.++++++.+++..+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 6799999999999999998887654
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.27 E-value=0.0088 Score=57.35 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=87.5
Q ss_pred eeEEEecCCC-ChH---HHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCC----CccEEeccCCCCCCHHHHHHHHhc
Q 020706 83 LRKLCVSGLH-NDM---MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALEAIGKH 154 (322)
Q Consensus 83 l~~L~l~~~~-~~~---~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~----~L~~L~l~~c~~i~~~~l~~l~~~ 154 (322)
+.++.+.++. .+. .+.......++|..|+++++.+.+.+...+...++ .|+.|.+..| .++..+...++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHH
Confidence 5666776654 232 33333445778999999999888888888877654 3577888886 5666655444333
Q ss_pred ---CCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcC---CC-CCEEeecCCC
Q 020706 155 ---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC---AL-LEFLDLRGCW 224 (322)
Q Consensus 155 ---c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~---~~-L~~L~L~~c~ 224 (322)
+..|+.+++..+.+...|...........++...++++|+|.+|.++......+.... +. +..|++..|.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 5667777776665543232222222222112355799999999998877666555433 44 5568887764
No 64
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.16 E-value=0.1 Score=49.91 Aligned_cols=128 Identities=21% Similarity=0.240 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHHHhcCCCeeEEEecCCCChH-------------------HHHHHHHhCCCCCEEecCCCCC-CHHHHH
Q 020706 64 QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDM-------------------MFSLIAENAGSLQTLRLPRSEM-SDSIVA 123 (322)
Q Consensus 64 ~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~~~-------------------~l~~l~~~~~~L~~L~L~~~~i-~~~~l~ 123 (322)
.++.+..+-..+..|..+.=+.|+|.+...|. .+..+..+.|.+.+++|++|++ .-..+.
T Consensus 158 kpe~IE~l~~v~~kRyd~~~~~LDL~nl~~DPel~~~di~~~l~~rn~M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~s 237 (585)
T KOG3763|consen 158 KPEEIEILKLVMNKRYDVSQQALDLQNLRFDPELVNRDILMVLNKRNCMAAVLKHIEENFPEILSLSLSNNRLYHLDALS 237 (585)
T ss_pred CHHHHHHHHHHHhccccHHHhhhhhhccccChhhhhccchhhcccchhhHHHHHHhhcCCcceeeeecccchhhchhhhh
Confidence 34555554455555665555666666543222 3344556677888888888743 335567
Q ss_pred HHHhcCCCccEEeccCCCCCCHHHHHHHHh-cCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEE
Q 020706 124 QIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRL 193 (322)
Q Consensus 124 ~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~-~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L 193 (322)
.+++..|+|+.|+|++ +..--.....+.+ ....|++|-+..+++- ........-+.+|.+.+|+|..|
T Consensus 238 slsq~apklk~L~LS~-N~~~~~~~~el~K~k~l~Leel~l~GNPlc-~tf~~~s~yv~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 238 SLSQIAPKLKTLDLSH-NHSKISSESELDKLKGLPLEELVLEGNPLC-TTFSDRSEYVSAIRELFPKLLRL 306 (585)
T ss_pred HHHHhcchhheeeccc-chhhhcchhhhhhhcCCCHHHeeecCCccc-cchhhhHHHHHHHHHhcchheee
Confidence 7777788888888887 4111111111111 2244555554433331 00011122344566666766655
No 65
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.58 E-value=0.1 Score=28.89 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=13.4
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhc
Q 020706 130 SAVTFLDLSYCSKIGAPALEAIGKH 154 (322)
Q Consensus 130 ~~L~~L~l~~c~~i~~~~l~~l~~~ 154 (322)
++|++|+|++ +.+++.+..++++.
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHHH
Confidence 4455666665 55565555555543
No 66
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.50 E-value=0.1 Score=52.94 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=5.9
Q ss_pred CeeEEEecCC
Q 020706 82 SLRKLCVSGL 91 (322)
Q Consensus 82 ~l~~L~l~~~ 91 (322)
+|+.|+++++
T Consensus 221 nL~~L~Ls~N 230 (754)
T PRK15370 221 NIKTLYANSN 230 (754)
T ss_pred CCCEEECCCC
Confidence 4666666543
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.06 E-value=0.023 Score=53.69 Aligned_cols=107 Identities=26% Similarity=0.314 Sum_probs=59.7
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020706 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 181 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~ 181 (322)
.+.+|+.|.+..+.|.. +..+...+++|++|++++ +.|+. .++.. ++.|+.|.+..+.+. .+.
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~----l~~L~~L~l~~N~i~---------~~~ 156 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSF-NKITKLEGLST----LTLLKELNLSGNLIS---------DIS 156 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheeccc-cccccccchhh----ccchhhheeccCcch---------hcc
Confidence 35677777777775432 222134567788888877 66654 22322 233666665544331 011
Q ss_pred HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020706 182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 227 (322)
Q Consensus 182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~ 227 (322)
.+ ..+++|+.+++++|.++...-.. +..+..|+.+.+.++....
T Consensus 157 ~~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 157 GL-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred CC-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 11 12677777777777765543321 4567777777777765443
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.75 E-value=0.09 Score=54.32 Aligned_cols=111 Identities=21% Similarity=0.122 Sum_probs=60.1
Q ss_pred HhCCCCCEEecCCCCC-CHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHH
Q 020706 102 ENAGSLQTLRLPRSEM-SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180 (322)
Q Consensus 102 ~~~~~L~~L~L~~~~i-~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~ 180 (322)
..+++|++|-+.++.- -..+...+...+|.|+.|+|++|...+ +....+ ..+-+|+.|.+..+.+. ....+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I-~~Li~LryL~L~~t~I~-----~LP~~- 613 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSI-GELVHLRYLDLSDTGIS-----HLPSG- 613 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHH-hhhhhhhcccccCCCcc-----ccchH-
Confidence 3477888888888631 112223345567999999999854432 222222 23456777765544321 11112
Q ss_pred HHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 181 ~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
+ ..+.+|.+|++..+..... +..+...+++|++|.+.+..
T Consensus 614 --l-~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 614 --L-GNLKKLIYLNLEVTGRLES-IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred --H-HHHHhhheecccccccccc-ccchhhhcccccEEEeeccc
Confidence 2 2455677777776531111 13344457777777776643
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.66 E-value=0.066 Score=51.43 Aligned_cols=117 Identities=22% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhc-------CCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCC
Q 020706 104 AGSLQTLRLPRSEMSDSIVAQIAGR-------LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 176 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~-------~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~ 176 (322)
+..|+.+++..|.+...+...+.+. ..++++|.+++| .++......+....+..+++... ++...+.+.
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~e---l~l~~n~l~ 246 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRE---LDLASNKLG 246 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHH---HHHHhcCcc
Confidence 5556666666654444433333222 234566666654 44444444443333322221100 011111122
Q ss_pred chHHHHHHhcC----CCCCEEEecCcccCHHHHHHH---HhcCCCCCEEeecCCC
Q 020706 177 DDEANAIASTM----PKLKRLEMAYHVISTEIVLKI---LSSCALLEFLDLRGCW 224 (322)
Q Consensus 177 ~~~~~~l~~~~----p~L~~L~L~~~~i~~~~l~~i---~~~~~~L~~L~L~~c~ 224 (322)
+.++..+.+.+ ++++++.+..|.|++.+...+ +..|++++.|.++.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 23333333222 234555555555554443322 2344555555555543
No 70
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.62 E-value=0.058 Score=49.74 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.7
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020706 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
.|.+|+.|+|..|.+ ..+..++.+|.+|++|++.|++.-
T Consensus 503 nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCch--hhCChhhccccceeEEEecCCccC
Confidence 688999999999874 345667889999999999998643
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.36 E-value=0.035 Score=43.71 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=53.2
Q ss_pred eeEEEecCCCC---hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020706 83 LRKLCVSGLHN---DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 83 l~~L~l~~~~~---~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
+..++|+.|.- ..++.. ......|+.++|++|.+.+- -..+...+|.++.|++.. +.+++--.+ + ...|.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~-Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-L-AAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHH-HhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcch-hhhhhchHH-H-hhhHHhh
Confidence 34466666642 112222 22345677778877743321 224556677888888887 666543333 2 2345566
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc
Q 020706 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV 199 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~ 199 (322)
.|++..++++ .....+++ +.+|-.|+..++.
T Consensus 104 ~lNl~~N~l~--------~~p~vi~~-L~~l~~Lds~~na 134 (177)
T KOG4579|consen 104 SLNLRFNPLN--------AEPRVIAP-LIKLDMLDSPENA 134 (177)
T ss_pred hcccccCccc--------cchHHHHH-HHhHHHhcCCCCc
Confidence 6655544441 23334442 4555555555554
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.50 E-value=0.15 Score=47.65 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=19.0
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+++|+.|++++|.+++... +....+|+.|++++..
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccceecccccccccccc---ccccCccCEEeccCcc
Confidence 45556666666665544322 3344566666665543
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.42 E-value=0.078 Score=41.77 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCCEEecCCCCCC--HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020706 105 GSLQTLRLPRSEMS--DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 105 ~~L~~L~L~~~~i~--~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
..+..++|+.|.+- ...+..+.. -..|+..+|++ +.+. +.-..+...+|-++.|++..+.+ .+....
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~-N~fk-~fp~kft~kf~t~t~lNl~~nei--------sdvPeE 95 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSD-NGFK-KFPKKFTIKFPTATTLNLANNEI--------SDVPEE 95 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhC-CceEEEEeccc-chhh-hCCHHHhhccchhhhhhcchhhh--------hhchHH
Confidence 35667788888433 233444433 36677778876 4432 22335555556777776654433 222334
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeee
Q 020706 183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 243 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L 243 (322)
++ ++|.|+.|+++.|.+... ..-++ .+.+|-.|+.-++.....+-..+....+.|..|
T Consensus 96 ~A-am~aLr~lNl~~N~l~~~-p~vi~-~L~~l~~Lds~~na~~eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 96 LA-AMPALRSLNLRFNPLNAE-PRVIA-PLIKLDMLDSPENARAEIDVDLFYSSLPALIKL 153 (177)
T ss_pred Hh-hhHHhhhcccccCccccc-hHHHH-HHHhHHHhcCCCCccccCcHHHhccccHHHHHh
Confidence 54 788899999988876543 22233 366777777766654443434444444444444
No 74
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=91.31 E-value=0.0029 Score=51.45 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=22.9
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020706 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+.+|+.|.+..|.+.. +..=+..+.+|+.|.+.|+.
T Consensus 148 ~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccce
Confidence 56788888888875321 11222345677888887764
No 75
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.13 E-value=0.19 Score=51.97 Aligned_cols=14 Identities=29% Similarity=0.206 Sum_probs=8.0
Q ss_pred CCCCCEEeecCCCC
Q 020706 212 CALLEFLDLRGCWD 225 (322)
Q Consensus 212 ~~~L~~L~L~~c~~ 225 (322)
+++|+.|.+.+|..
T Consensus 716 l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 716 LGNLEELSILDCGI 729 (889)
T ss_pred ccCcceEEEEcCCC
Confidence 34566666666643
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.77 E-value=0.034 Score=52.60 Aligned_cols=124 Identities=24% Similarity=0.270 Sum_probs=76.8
Q ss_pred HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020706 102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 181 (322)
Q Consensus 102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~ 181 (322)
..+.+++.+.+..+.+.. +..-...+++|+.|++.+ +.+.. +..+...+++|+.|.++.+.+. .+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~I~---------~i~ 134 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNKIT---------KLE 134 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccc-cchhh--cccchhhhhcchheeccccccc---------ccc
Confidence 345667777777765544 122224568899999987 55543 2222456789999988766541 122
Q ss_pred HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020706 182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
.+. .++.|+.|++.+|.|+...-. ..++.|+.++++++......... ...+.+|+.+.
T Consensus 135 ~l~-~l~~L~~L~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~ 192 (414)
T KOG0531|consen 135 GLS-TLTLLKELNLSGNLISDISGL---ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD 192 (414)
T ss_pred chh-hccchhhheeccCcchhccCC---ccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence 232 566799999999987654322 23789999999988655332211 34556666553
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.29 E-value=0.18 Score=47.17 Aligned_cols=103 Identities=25% Similarity=0.259 Sum_probs=51.1
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcC-CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020706 105 GSLQTLRLPRSEMSDSIVAQIAGRL-SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
+.++.|.+.++.+++- ....... ++|+.|++++ +.+..-. .-...+++|+.|.++.+.+ ..+...
T Consensus 116 ~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~l---------~~l~~~ 181 (394)
T COG4886 116 TNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFNDL---------SDLPKL 181 (394)
T ss_pred cceeEEecCCcccccC--ccccccchhhcccccccc-cchhhhh--hhhhccccccccccCCchh---------hhhhhh
Confidence 5677777777655432 2222223 2677777776 4544321 2234567777776554433 111111
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020706 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c 223 (322)
....++|+.|.++++.+++-.. .......|++|.++++
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N 219 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLPP--EIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhheeccCCccccCch--hhhhhhhhhhhhhcCC
Confidence 1145677777777766443211 1112233555555554
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.08 E-value=0.46 Score=45.58 Aligned_cols=90 Identities=26% Similarity=0.271 Sum_probs=62.5
Q ss_pred HHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCc--ccCHHHHHHHHh-cCCCCCEEeecCCC
Q 020706 148 LEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH--VISTEIVLKILS-SCALLEFLDLRGCW 224 (322)
Q Consensus 148 l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~--~i~~~~l~~i~~-~~~~L~~L~L~~c~ 224 (322)
+..+....|.+.++.|+.+.+ ..-+.+..++...|+|+.|+|++| .+... ..+-+ +...|+.|.+.|++
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL------~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRL------YHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred HHHhhcCCcceeeeecccchh------hchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCc
Confidence 455566678888887766654 233567778889999999999998 43332 22222 45789999999988
Q ss_pred CcCC--Ch----HHHHhcCCCCeeeCC
Q 020706 225 DVKL--DD----KFMKGNFPNLKVLGP 245 (322)
Q Consensus 225 ~~~~--~~----~~l~~~~~~Lk~L~~ 245 (322)
.++. +. ..+.+.+|+|..|+.
T Consensus 282 lc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 282 LCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred cccchhhhHHHHHHHHHhcchheeecC
Confidence 7652 11 245789999999953
No 79
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.55 E-value=0.6 Score=47.52 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=58.1
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020706 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|.+.+|.++. +.. .-+++|+.|++++| .++. ....+ .++|+.|.++.+.+. . + .. .+.
T Consensus 325 ~sL~~L~Ls~N~Lt~--LP~--~l~~sL~~L~Ls~N-~L~~-LP~~l---p~~L~~LdLs~N~Lt--~--L-P~---~l~ 387 (754)
T PRK15370 325 PGLKTLEAGENALTS--LPA--SLPPELQVLDVSKN-QITV-LPETL---PPTITTLDVSRNALT--N--L-PE---NLP 387 (754)
T ss_pred ccceeccccCCcccc--CCh--hhcCcccEEECCCC-CCCc-CChhh---cCCcCEEECCCCcCC--C--C-CH---hHH
Confidence 578888888885543 111 11368888888874 4542 11111 267888877665442 1 1 11 111
Q ss_pred hcCCCCCEEEecCcccCH--HHHHHHHhcCCCCCEEeecCCC
Q 020706 185 STMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~--~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
++|+.|++++|.++. ..+......++++..|+|.++.
T Consensus 388 ---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 ---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 257777888877542 2344455566788888888775
No 80
>PF13013 F-box-like_2: F-box-like domain
Probab=88.96 E-value=0.67 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=25.7
Q ss_pred CcccCCHHHHHHHHccCChHHHhhhhhhhhH
Q 020706 9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCK 39 (322)
Q Consensus 9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk 39 (322)
...+||.|++..||.+.+..+.+. ..+.|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~-l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLA-LSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHH-HHHHHH
Confidence 377899999999999999999877 466676
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.96 E-value=0.16 Score=49.51 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=36.1
Q ss_pred cccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCcee
Q 020706 10 WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQ 52 (322)
Q Consensus 10 w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~ 52 (322)
...||.|+...||.+|+.+.++. +++||+.|+.++.+...|.
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~-~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLA-VRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhh-hhhhcchhhhhhhccchhh
Confidence 34699999999999999999888 7999999999998644444
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=88.94 E-value=0.2 Score=46.20 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=47.7
Q ss_pred HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChH
Q 020706 152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 231 (322)
Q Consensus 152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~ 231 (322)
.+.+|+|+.|+++.+.++. + .++ ++ .....|++|.|..|++.... ...++++.+|+.|+|.++...+...
T Consensus 270 f~~L~~L~~lnlsnN~i~~----i-~~~--aF-e~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~- 339 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITR----I-EDG--AF-EGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAP- 339 (498)
T ss_pred HhhcccceEeccCCCccch----h-hhh--hh-cchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEec-
Confidence 4556778888766554421 0 111 12 24457888888888754322 2345677888888888875443222
Q ss_pred HHHhcCCCCeeeCCcc
Q 020706 232 FMKGNFPNLKVLGPFV 247 (322)
Q Consensus 232 ~l~~~~~~Lk~L~~~~ 247 (322)
..++....|.+|.+..
T Consensus 340 ~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLS 355 (498)
T ss_pred ccccccceeeeeehcc
Confidence 2234445555555444
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.27 E-value=0.51 Score=22.72 Aligned_cols=11 Identities=36% Similarity=0.265 Sum_probs=4.5
Q ss_pred CCCEEeecCCC
Q 020706 214 LLEFLDLRGCW 224 (322)
Q Consensus 214 ~L~~L~L~~c~ 224 (322)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44555555543
No 84
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=84.67 E-value=2.6 Score=38.13 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH---HhcCCCCCEEEe
Q 020706 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEM 195 (322)
Q Consensus 119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l---~~~~p~L~~L~L 195 (322)
+..+..+-..=|.|+..+|+....|+...+..+.+.+.+=++.+. +.+.+-...+..+.++ .+.++.|++|++
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~----Fsla~tr~~d~vA~a~a~ml~~n~sl~slnv 262 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKK----FSLANTRSSDPVAFAIAEMLKENKSLTSLNV 262 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhh----hhhhcccCCchhHHHHHHHHhhcchhhheec
Confidence 344555555668999999988777888777777666544443321 1222222333444444 456899999999
Q ss_pred cCcccCHHHHHHHHhcCCCCCEE
Q 020706 196 AYHVISTEIVLKILSSCALLEFL 218 (322)
Q Consensus 196 ~~~~i~~~~l~~i~~~~~~L~~L 218 (322)
.+|.||..++++++..+..=++|
T Consensus 263 esnFItg~gi~a~~~al~~n~tl 285 (353)
T KOG3735|consen 263 ESNFITGLGIMALLRALQSNKSL 285 (353)
T ss_pred cccccccHHHHHHHHHHhccchh
Confidence 99999999999999866543333
No 85
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=82.99 E-value=0.94 Score=24.55 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=17.3
Q ss_pred CCCEEEecCcccCHH-HHHHHHhcCC
Q 020706 189 KLKRLEMAYHVISTE-IVLKILSSCA 213 (322)
Q Consensus 189 ~L~~L~L~~~~i~~~-~l~~i~~~~~ 213 (322)
+||+|.|....+.++ .+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 477788877765544 5777777776
No 86
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.52 E-value=1 Score=41.69 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=39.5
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020706 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
+.+|+|+.|+|++|.|+...- .-+.+...|+.|.|..+..-. -...+++...+|++|.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSL 329 (498)
T ss_pred hhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeee
Confidence 478888888888887765432 234467788888887764221 22445678888888875
No 87
>PRK15386 type III secretion protein GogB; Provisional
Probab=82.40 E-value=2.5 Score=39.73 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=40.4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 020706 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 158 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L 158 (322)
+..+++|++++|. -..+. .--++|++|.+.+| .++. +.... .++|+.|.+++|..+. .--++|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~--------sLP~sL 114 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLP---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS--------GLPESV 114 (426)
T ss_pred hcCCCEEEeCCCC-CcccC---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc--------cccccc
Confidence 3668899998872 11111 22236999999887 4321 11111 2688999999886553 112456
Q ss_pred ceeecc
Q 020706 159 VVLCRN 164 (322)
Q Consensus 159 ~~L~l~ 164 (322)
+.|.+.
T Consensus 115 e~L~L~ 120 (426)
T PRK15386 115 RSLEIK 120 (426)
T ss_pred ceEEeC
Confidence 766653
No 88
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=82.37 E-value=1.1 Score=33.04 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCcccCCHHHHHHHHccCChHHHhh
Q 020706 8 RHWDELIPDALGLIFRNLSLQEVLT 32 (322)
Q Consensus 8 ~~w~~LP~eiL~~IF~~L~~~~~l~ 32 (322)
..|..||.||-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999999765
No 89
>PRK15386 type III secretion protein GogB; Provisional
Probab=81.97 E-value=1.2 Score=41.75 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=36.9
Q ss_pred HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecccc
Q 020706 102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 166 (322)
Q Consensus 102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~ 166 (322)
..|++++.|.+++|.++. +..--++|++|.+++|..++.-. ..+ .++|+.|.+..+
T Consensus 49 ~~~~~l~~L~Is~c~L~s-----LP~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-----LPVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-----cCCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCc
Confidence 347999999999995543 21222579999999997753211 111 257888877644
No 90
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.93 E-value=0.78 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.101 Sum_probs=25.5
Q ss_pred hcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCCc
Q 020706 210 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 246 (322)
Q Consensus 210 ~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~~ 246 (322)
.++.+|..|||.++... .-.-+..+|.+|++|...
T Consensus 502 ~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELD 536 (565)
T ss_pred hhhhhcceeccCCCchh--hCChhhccccceeEEEec
Confidence 46789999999987544 223445799999999653
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.09 E-value=2.2 Score=21.84 Aligned_cols=10 Identities=60% Similarity=0.899 Sum_probs=5.8
Q ss_pred CCCEEeecCC
Q 020706 214 LLEFLDLRGC 223 (322)
Q Consensus 214 ~L~~L~L~~c 223 (322)
+|++|+|++|
T Consensus 1 ~L~~Ldls~n 10 (22)
T PF00560_consen 1 NLEYLDLSGN 10 (22)
T ss_dssp TESEEEETSS
T ss_pred CccEEECCCC
Confidence 3556666665
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=69.12 E-value=1.1 Score=34.17 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=14.7
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020706 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 241 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk 241 (322)
.+++|+.+.+..+ ++.-+. ..+.++ +|+.+.+... ++.-+......|++||
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHT-TTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccccccccCcc-ccEEch-hhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 4566666666543 111111 113345 6666666542 2112233345565554
No 93
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=68.84 E-value=2.9 Score=36.56 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCcCCCCcccCCHHHHHHHHccCC-hHHHhhhhhhhhHHHHHHhcCCCceeee
Q 020706 3 GESEFRHWDELIPDALGLIFRNLS-LQEVLTVIPGVCKSWRRAVIGPYCWQEI 54 (322)
Q Consensus 3 ~~~~~~~w~~LP~eiL~~IF~~L~-~~~~l~~~~~VCk~W~~~~~~~~lw~~i 54 (322)
+++....+.+||.+++..|+.+|+ ..+++. +++|-..-..+..+..+|+++
T Consensus 195 ~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s-~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 195 PDPAGLTLHDLPLECVLNILLRLSDHRDLES-LAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred CCcCCCCcccchHHHHHHHHHHccCcchHHH-HHHhhHHHHHHHHHHHHHHHH
Confidence 345577899999999999999997 456666 688877767766667778765
No 94
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=65.83 E-value=3.8 Score=37.12 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=40.6
Q ss_pred CCcccCCHHHHHHHHccCChHHH-------hhhhhhhhHHHHHHhc----CCCceeeeccccc
Q 020706 8 RHWDELIPDALGLIFRNLSLQEV-------LTVIPGVCKSWRRAVI----GPYCWQEIDIEEW 59 (322)
Q Consensus 8 ~~w~~LP~eiL~~IF~~L~~~~~-------l~~~~~VCk~W~~~~~----~~~lw~~i~l~~~ 59 (322)
..|..||++.|..|..+..-.+- +..++-||+.|+..+. .|..|..+++...
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~ 105 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPAS 105 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHH
Confidence 68999999999999998875543 2238999999999775 3777777776643
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=64.13 E-value=5.9 Score=20.97 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=6.1
Q ss_pred CCCCEEEecCcc
Q 020706 188 PKLKRLEMAYHV 199 (322)
Q Consensus 188 p~L~~L~L~~~~ 199 (322)
++|++|+|++|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 345555555554
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=64.13 E-value=5.9 Score=20.97 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=6.1
Q ss_pred CCCCEEEecCcc
Q 020706 188 PKLKRLEMAYHV 199 (322)
Q Consensus 188 p~L~~L~L~~~~ 199 (322)
++|++|+|++|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 345555555554
No 97
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=61.41 E-value=4.8 Score=43.95 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.8
Q ss_pred eeeeecc
Q 020706 302 ELRFYDG 308 (322)
Q Consensus 302 ~~~~~~~ 308 (322)
++.=+++
T Consensus 179 ~~~~~~d 185 (2849)
T PTZ00415 179 EIKGFDD 185 (2849)
T ss_pred cccCCCc
Confidence 4443443
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.49 E-value=13 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=7.5
Q ss_pred CCCCEEEecCccc
Q 020706 188 PKLKRLEMAYHVI 200 (322)
Q Consensus 188 p~L~~L~L~~~~i 200 (322)
.+|+.|.|++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3556666666554
No 99
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.10 E-value=11 Score=38.66 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=7.8
Q ss_pred HHHhcCCCCCEEeecC
Q 020706 207 KILSSCALLEFLDLRG 222 (322)
Q Consensus 207 ~i~~~~~~L~~L~L~~ 222 (322)
.++...|.|-.-.+..
T Consensus 1294 ~lLh~VP~Ldqc~VtF 1309 (1516)
T KOG1832|consen 1294 KLLHSVPSLDQCAVTF 1309 (1516)
T ss_pred HHHhcCccccceEEEe
Confidence 3444555555444444
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=48.34 E-value=32 Score=31.29 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHh
Q 020706 96 MFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAG 127 (322)
Q Consensus 96 ~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~ 127 (322)
.+..+-.+=++|+.++|.+. .|+...+..++.
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~e 221 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSE 221 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHH
Confidence 34444444455555555554 454444444333
No 101
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.79 E-value=11 Score=38.74 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=11.5
Q ss_pred HHHHhcCCCCCEEEecCcc
Q 020706 181 NAIASTMPKLKRLEMAYHV 199 (322)
Q Consensus 181 ~~l~~~~p~L~~L~L~~~~ 199 (322)
+.+..+-|.|-.-.+.+|.
T Consensus 1293 F~lLh~VP~Ldqc~VtFNs 1311 (1516)
T KOG1832|consen 1293 FKLLHSVPSLDQCAVTFNS 1311 (1516)
T ss_pred HHHHhcCccccceEEEecc
Confidence 3444567777766666653
No 102
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=35.90 E-value=7.7 Score=37.92 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020706 189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 227 (322)
Q Consensus 189 ~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~ 227 (322)
.|..|+++.|+|+.--+ -+..+.+|++|-|.+++.-+
T Consensus 212 pLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ceeeeecccCceeecch--hhhhhhhheeeeeccCCCCC
Confidence 58888888888654322 24577888888888876543
No 103
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=31.16 E-value=19 Score=34.66 Aligned_cols=11 Identities=36% Similarity=0.749 Sum_probs=6.6
Q ss_pred cchhhcccccC
Q 020706 284 DDEIYEGMWDD 294 (322)
Q Consensus 284 ~~~~~~~~~~~ 294 (322)
|||||+.+|+|
T Consensus 307 dDDDDssDWED 317 (507)
T PF11702_consen 307 DDDDDSSDWED 317 (507)
T ss_pred cCCccchhhhh
Confidence 45556777843
No 104
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=28.73 E-value=35 Score=33.88 Aligned_cols=8 Identities=50% Similarity=1.037 Sum_probs=4.0
Q ss_pred cc-cccccc
Q 020706 307 DG-IEEDAG 314 (322)
Q Consensus 307 ~~-~~~~~~ 314 (322)
+| ++++.|
T Consensus 562 hgyLSedEg 570 (811)
T KOG4364|consen 562 HGYLSEDEG 570 (811)
T ss_pred Ccccccccc
Confidence 45 555444
No 105
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.32 E-value=44 Score=23.19 Aligned_cols=14 Identities=43% Similarity=0.556 Sum_probs=6.0
Q ss_pred hhhhcCCCCCCCCc
Q 020706 271 WEFLAGEMGDYDDD 284 (322)
Q Consensus 271 ~~~~~~~~~~~~~~ 284 (322)
...+.+++++||++
T Consensus 53 iselm~~dd~~~d~ 66 (73)
T PF11332_consen 53 ISELMGDDDDYYDD 66 (73)
T ss_pred HHHHhcCCcccccc
Confidence 33334444445443
No 106
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=25.79 E-value=37 Score=18.38 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.7
Q ss_pred CCCEEEecCcc
Q 020706 189 KLKRLEMAYHV 199 (322)
Q Consensus 189 ~L~~L~L~~~~ 199 (322)
+|+.|++++|.
T Consensus 3 ~L~~L~vs~N~ 13 (26)
T smart00364 3 SLKELNVSNNQ 13 (26)
T ss_pred ccceeecCCCc
Confidence 45555555554
No 107
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.96 E-value=53 Score=17.80 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=9.3
Q ss_pred HHhcCCCCCEEeecC
Q 020706 208 ILSSCALLEFLDLRG 222 (322)
Q Consensus 208 i~~~~~~L~~L~L~~ 222 (322)
++..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 445667777777543
No 108
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=24.09 E-value=1.7e+02 Score=22.66 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=22.5
Q ss_pred eeEEEecCCCChHHHHHHHHhCCCCCEEecCCC
Q 020706 83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS 115 (322)
Q Consensus 83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~ 115 (322)
-+.+.|..-++...+-.+...||+|+.+.++..
T Consensus 19 E~~VHlAFRPSN~Dif~Lv~~CP~lk~iqiP~S 51 (131)
T PF08004_consen 19 EEIVHLAFRPSNKDIFSLVERCPNLKAIQIPPS 51 (131)
T ss_pred ceEEEEEecCcchHHHHHHHhCCCCeEEeCChH
Confidence 344555555666666667778888888888765
No 109
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=20.29 E-value=30 Score=21.62 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecc
Q 020706 15 PDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDI 56 (322)
Q Consensus 15 ~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l 56 (322)
.++...||..|....-++ +.++||..++... |.+++++.+
T Consensus 6 ~~v~~lI~~~l~~i~P~t-~l~lSr~~yk~ii-P~iYr~v~~ 45 (46)
T PF12586_consen 6 GPVHDLILDELSRIRPLT-YLRLSRYHYKRII-PIIYRHVTI 45 (46)
T ss_pred HhHHHHHHHHHHhcCChh-heeeeHHHhhhhh-hhhhheeec
Confidence 456666777666655566 5778888776655 667776643
Done!