Query 020708
Match_columns 322
No_of_seqs 136 out of 312
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06695 Sm_multidrug_ex: Puta 100.0 3.7E-38 8E-43 264.7 13.2 121 160-281 1-121 (121)
2 COG2426 Predicted membrane pro 100.0 3.8E-29 8.3E-34 214.2 11.7 130 156-286 1-136 (142)
3 PRK10847 hypothetical protein; 98.3 3.3E-05 7.2E-10 70.6 16.7 179 133-318 16-215 (219)
4 PF09335 SNARE_assoc: SNARE as 97.8 0.00034 7.3E-09 56.3 11.6 104 174-285 15-120 (123)
5 COG0586 DedA Uncharacterized m 97.4 0.011 2.4E-07 53.8 16.7 127 155-287 32-162 (208)
6 COG0398 Uncharacterized conser 96.6 0.08 1.7E-06 49.3 14.6 141 133-286 36-183 (223)
7 COG1238 Predicted membrane pro 96.5 0.1 2.2E-06 46.8 13.7 124 154-287 30-154 (161)
8 PRK07331 cobalt transport prot 84.4 35 0.00076 33.8 14.2 83 229-314 40-131 (322)
9 PF09835 DUF2062: Uncharacteri 77.9 44 0.00095 28.7 14.4 56 151-206 30-87 (154)
10 PRK15065 PTS system mannose-sp 76.8 76 0.0016 30.8 14.1 22 162-183 79-100 (262)
11 TIGR02119 panF sodium/pantothe 76.6 87 0.0019 31.4 15.5 125 140-273 40-166 (471)
12 PRK06265 cobalt transport prot 74.1 42 0.00091 30.6 10.4 83 229-315 36-126 (199)
13 PRK13453 F0F1 ATP synthase sub 73.2 12 0.00026 33.2 6.5 44 166-211 9-54 (173)
14 PRK11909 cobalt transport prot 70.0 1E+02 0.0022 29.2 12.7 82 229-313 40-130 (230)
15 COG3447 Predicted integral mem 69.4 1.3E+02 0.0028 30.2 15.5 70 234-303 124-210 (308)
16 PRK09695 glycolate transporter 68.9 1.1E+02 0.0024 32.6 13.5 48 151-198 121-176 (560)
17 PRK11375 allantoin permease; P 67.3 17 0.00036 37.3 7.0 35 251-287 48-82 (484)
18 TIGR00822 EII-Sor PTS system, 66.8 1.3E+02 0.0028 29.3 13.4 22 162-183 79-100 (265)
19 PRK11017 codB cytosine permeas 66.4 7.4 0.00016 38.6 4.1 36 250-287 29-64 (404)
20 PRK09757 PTS system N-acetylga 65.9 1.3E+02 0.0029 29.1 13.8 22 162-183 80-101 (267)
21 PRK09921 permease DsdX; Provis 65.5 1.7E+02 0.0037 30.2 18.1 157 157-317 29-204 (445)
22 PF02652 Lactate_perm: L-lacta 65.1 1.9E+02 0.0041 30.6 16.1 49 151-199 106-162 (522)
23 PF01102 Glycophorin_A: Glycop 64.4 11 0.00023 32.8 4.2 27 289-316 68-94 (122)
24 PF05128 DUF697: Domain of unk 63.6 1E+02 0.0022 26.9 11.8 54 223-276 20-81 (162)
25 PF03609 EII-Sor: PTS system s 63.4 1.4E+02 0.003 28.3 14.0 134 145-294 53-196 (238)
26 PRK13707 conjugal transfer pil 63.1 17 0.00036 30.4 5.0 21 301-321 49-69 (101)
27 PF01618 MotA_ExbB: MotA/TolQ/ 62.5 82 0.0018 26.7 9.2 20 295-314 107-126 (139)
28 PRK10263 DNA translocase FtsK; 60.8 1.4E+02 0.0031 35.3 13.2 22 96-117 25-46 (1355)
29 COG0581 PstA ABC-type phosphat 60.7 1.8E+02 0.0039 28.8 12.3 104 178-286 76-207 (292)
30 PF02447 GntP_permease: GntP f 59.2 2.2E+02 0.0049 29.4 14.1 154 163-319 31-202 (441)
31 PF02133 Transp_cyt_pur: Perme 57.7 15 0.00033 36.1 4.5 41 249-290 27-67 (440)
32 TIGR00795 lctP L-lactate trans 54.8 2.9E+02 0.0062 29.3 15.6 50 149-198 110-167 (530)
33 COG1288 Predicted membrane pro 54.2 1.5E+02 0.0032 31.5 10.9 21 165-185 166-186 (481)
34 PRK10420 L-lactate permease; P 53.9 2.6E+02 0.0057 29.9 13.0 49 150-198 120-176 (551)
35 PRK15083 PTS system mannitol-s 53.8 1.9E+02 0.0041 31.0 12.1 25 183-207 98-122 (639)
36 PRK08319 cobalt transport prot 53.0 2E+02 0.0043 26.9 11.4 83 228-313 41-132 (224)
37 PRK09821 putative transporter; 52.4 3E+02 0.0064 28.8 16.8 153 163-318 35-204 (454)
38 TIGR02762 TraL_TIGR type IV co 51.6 45 0.00097 27.3 5.6 25 296-320 41-65 (95)
39 TIGR02230 ATPase_gene1 F0F1-AT 51.4 88 0.0019 26.4 7.4 53 228-283 38-93 (100)
40 TIGR00791 gntP gluconate trans 51.3 2.7E+02 0.0059 28.0 16.2 113 163-279 31-151 (440)
41 PF03773 DUF318: Predicted per 51.2 2.3E+02 0.0051 27.2 12.3 35 134-168 39-73 (307)
42 PRK10472 low affinity gluconat 49.5 3.3E+02 0.0071 28.4 15.8 149 163-316 35-203 (445)
43 TIGR00800 ncs1 NCS1 nucleoside 49.3 39 0.00084 33.8 5.9 41 248-289 31-71 (442)
44 COG0628 yhhT Predicted permeas 46.2 2.9E+02 0.0062 26.8 14.7 31 235-265 238-268 (355)
45 PF00474 SSF: Sodium:solute sy 45.9 2.9E+02 0.0064 26.8 13.2 120 140-271 6-127 (406)
46 PRK13461 F0F1 ATP synthase sub 45.7 66 0.0014 27.8 6.1 39 171-211 1-41 (159)
47 COG1457 CodB Purine-cytosine p 45.4 52 0.0011 34.2 6.2 36 250-287 39-74 (442)
48 PF07672 MFS_Mycoplasma: Mycop 44.2 2.1E+02 0.0046 28.1 9.8 41 271-311 179-222 (267)
49 TIGR01594 holin_lambda phage h 42.9 1.4E+02 0.0029 25.3 7.3 75 247-321 24-106 (107)
50 PRK14984 high-affinity glucona 42.9 4.1E+02 0.0089 27.7 15.2 151 163-316 31-199 (438)
51 TIGR02121 Na_Pro_sym sodium/pr 42.2 3.9E+02 0.0084 27.2 17.2 100 167-275 63-167 (487)
52 PF12666 PrgI: PrgI family pro 40.2 1.5E+02 0.0032 23.4 6.8 45 259-303 14-58 (93)
53 PRK10527 hypothetical protein; 39.9 54 0.0012 28.5 4.6 39 176-215 11-60 (125)
54 PF01891 CbiM: Cobalt uptake s 39.0 3E+02 0.0064 24.9 13.1 111 181-314 11-130 (205)
55 COG1301 GltP Na+/H+-dicarboxyl 38.9 4.2E+02 0.0091 27.4 11.5 37 185-221 142-179 (415)
56 PF06123 CreD: Inner membrane 38.9 1.6E+02 0.0035 30.5 8.5 53 265-317 323-380 (430)
57 PRK09442 panF sodium/panthothe 37.5 4.5E+02 0.0098 26.6 15.3 21 253-273 147-167 (483)
58 PF13303 PTS_EIIC_2: Phosphotr 37.0 4.5E+02 0.0097 26.4 14.6 159 118-293 7-186 (327)
59 PRK14473 F0F1 ATP synthase sub 36.1 1.1E+02 0.0025 26.5 6.1 39 171-211 4-44 (164)
60 TIGR03750 conj_TIGR03750 conju 36.0 2.8E+02 0.0061 23.8 8.5 55 261-317 17-76 (111)
61 TIGR00851 mtlA PTS system, man 36.0 96 0.0021 30.8 6.2 27 183-209 90-116 (338)
62 PF11990 DUF3487: Protein of u 34.4 3E+02 0.0066 23.7 8.6 56 261-317 20-79 (121)
63 PRK09586 murP PTS system N-ace 34.4 5.7E+02 0.012 26.8 14.3 27 183-209 227-253 (476)
64 COG1953 FUI1 Cytosine/uracil/t 33.7 48 0.001 35.1 3.9 60 225-287 37-96 (497)
65 PF04156 IncA: IncA protein; 33.2 2E+02 0.0044 25.3 7.3 10 269-278 10-19 (191)
66 TIGR00786 dctM TRAP transporte 32.8 4.9E+02 0.011 25.6 13.5 69 208-278 56-131 (405)
67 PF04156 IncA: IncA protein; 32.5 1.9E+02 0.0041 25.5 7.0 18 287-304 38-56 (191)
68 PRK07374 dnaE DNA polymerase I 32.4 42 0.00091 38.8 3.5 46 219-264 330-386 (1170)
69 PF04246 RseC_MucC: Positive r 32.1 1.1E+02 0.0024 25.7 5.3 41 149-189 70-110 (135)
70 TIGR03648 Na_symport_lg probab 32.0 6E+02 0.013 26.4 16.3 20 253-272 134-153 (552)
71 PRK11715 inner membrane protei 31.7 2.3E+02 0.0051 29.5 8.4 52 266-317 330-386 (436)
72 PRK09554 feoB ferrous iron tra 31.7 7.6E+02 0.016 27.5 12.8 12 228-239 383-394 (772)
73 PRK03356 L-carnitine/gamma-but 31.3 1.3E+02 0.0029 31.7 6.7 71 247-317 420-501 (504)
74 PRK09950 putative transporter; 30.5 1.4E+02 0.003 31.6 6.6 73 245-317 415-499 (506)
75 COG3333 Uncharacterized protei 30.3 5E+02 0.011 27.8 10.4 117 132-260 132-282 (504)
76 PRK05898 dnaE DNA polymerase I 30.3 55 0.0012 37.2 3.9 47 218-264 254-311 (971)
77 PRK11281 hypothetical protein; 30.3 1.2E+02 0.0027 35.0 6.6 14 229-242 881-894 (1113)
78 PRK08475 F0F1 ATP synthase sub 30.1 1.3E+02 0.0029 26.6 5.6 28 184-211 29-58 (167)
79 COG3216 Uncharacterized protei 29.9 2.1E+02 0.0046 26.8 6.9 56 152-207 55-112 (184)
80 PRK14472 F0F1 ATP synthase sub 29.7 1.2E+02 0.0027 26.7 5.3 41 170-212 13-55 (175)
81 PRK09395 actP acetate permease 29.6 6.6E+02 0.014 26.1 14.6 22 252-273 170-191 (551)
82 COG3301 NrfD Formate-dependent 29.5 6E+02 0.013 25.6 12.8 53 229-286 131-191 (305)
83 TIGR02358 thia_cytX probable h 29.3 74 0.0016 31.5 4.3 37 249-288 16-52 (386)
84 PF06055 ExoD: Exopolysacchari 28.6 1.7E+02 0.0038 26.7 6.2 9 242-250 139-148 (187)
85 TIGR00123 cbiM cobalamin biosy 28.4 4.9E+02 0.011 24.2 12.6 111 182-313 13-132 (214)
86 PF11346 DUF3149: Protein of u 28.4 1.4E+02 0.003 21.7 4.4 33 285-317 8-40 (42)
87 PRK06826 dnaE DNA polymerase I 28.4 66 0.0014 37.2 4.1 47 218-264 318-375 (1151)
88 PF10011 DUF2254: Predicted me 27.7 6.2E+02 0.014 25.2 11.1 50 148-197 15-68 (371)
89 PRK05673 dnaE DNA polymerase I 27.2 66 0.0014 37.1 3.9 45 220-264 320-375 (1135)
90 PF11712 Vma12: Endoplasmic re 27.2 2.5E+02 0.0054 24.2 6.6 29 288-316 111-140 (142)
91 PRK01637 hypothetical protein; 27.0 2.9E+02 0.0062 26.3 7.6 59 253-311 186-256 (286)
92 PF05232 BTP: Bacterial Transm 26.5 2.4E+02 0.0052 21.8 5.8 53 229-292 8-60 (67)
93 TIGR00594 polc DNA-directed DN 26.5 78 0.0017 36.1 4.3 46 219-264 323-379 (1022)
94 PF13571 DUF4133: Domain of un 26.5 59 0.0013 27.4 2.5 46 268-313 18-64 (96)
95 PRK09532 DNA polymerase III su 26.3 69 0.0015 35.9 3.8 47 218-264 327-384 (874)
96 PRK14474 F0F1 ATP synthase sub 26.3 1.8E+02 0.0039 27.6 6.1 38 172-211 2-41 (250)
97 PRK07135 dnaE DNA polymerase I 26.1 70 0.0015 36.4 3.8 46 219-264 253-309 (973)
98 PRK10520 rhtB homoserine/homos 26.0 4.7E+02 0.01 23.2 9.3 65 251-316 23-93 (205)
99 PF10011 DUF2254: Predicted me 25.6 4.3E+02 0.0092 26.4 8.8 77 125-205 74-154 (371)
100 PRK09928 choline transport pro 25.6 1.5E+02 0.0033 32.6 6.1 73 245-317 422-505 (679)
101 PRK10862 SoxR reducing system 25.3 2E+02 0.0043 25.5 5.8 40 149-188 77-116 (154)
102 TIGR03144 cytochr_II_ccsB cyto 25.2 5.6E+02 0.012 23.8 12.0 53 229-283 147-204 (243)
103 PRK13455 F0F1 ATP synthase sub 25.1 1.9E+02 0.0042 25.7 5.7 28 184-211 33-63 (184)
104 PRK06920 dnaE DNA polymerase I 24.9 81 0.0018 36.4 4.1 47 218-264 303-360 (1107)
105 TIGR00842 bcct choline/carniti 24.9 2.1E+02 0.0046 29.8 6.7 72 245-316 369-452 (453)
106 PF11947 DUF3464: Protein of u 24.7 94 0.002 28.1 3.7 58 234-295 62-119 (153)
107 COG4956 Integral membrane prot 24.6 6E+02 0.013 26.0 9.5 17 277-293 114-130 (356)
108 TIGR00800 ncs1 NCS1 nucleoside 24.2 7.3E+02 0.016 24.8 14.3 59 139-198 11-69 (442)
109 PF14362 DUF4407: Domain of un 23.9 3.5E+02 0.0077 25.7 7.6 66 230-301 13-98 (301)
110 PRK10958 leucine export protei 23.4 5.6E+02 0.012 23.2 12.0 68 249-317 25-98 (212)
111 PRK01663 C4-dicarboxylate tran 23.2 8.3E+02 0.018 25.1 11.1 37 184-220 147-183 (428)
112 PRK05672 dnaE2 error-prone DNA 22.8 85 0.0018 35.9 3.7 47 218-264 312-368 (1046)
113 COG4146 Predicted symporter [G 22.6 4.7E+02 0.01 27.9 8.5 78 200-283 94-178 (571)
114 PRK09824 PTS system beta-gluco 22.6 1E+03 0.022 26.0 14.0 26 182-207 214-239 (627)
115 PRK10034 fructuronate transpor 22.5 8.9E+02 0.019 25.2 17.3 151 163-316 34-202 (447)
116 PF11821 DUF3341: Protein of u 21.8 2.6E+02 0.0056 25.6 6.0 58 244-307 35-116 (173)
117 PRK10414 biopolymer transport 21.7 5.6E+02 0.012 24.5 8.4 29 288-316 172-203 (244)
118 PRK05759 F0F1 ATP synthase sub 21.7 2.3E+02 0.0049 24.2 5.3 30 183-212 10-41 (156)
119 COG2239 MgtE Mg/Co/Ni transpor 21.6 4.8E+02 0.01 27.3 8.5 68 234-303 311-397 (451)
120 PF02028 BCCT: BCCT family tra 21.6 3E+02 0.0064 28.9 7.1 71 247-317 407-485 (485)
121 PF06103 DUF948: Bacterial pro 21.6 1.2E+02 0.0026 23.8 3.4 27 293-319 3-29 (90)
122 PRK13460 F0F1 ATP synthase sub 21.4 2.8E+02 0.0061 24.4 6.0 20 192-211 33-52 (173)
123 PRK08476 F0F1 ATP synthase sub 21.2 2.6E+02 0.0055 24.1 5.6 39 170-210 2-42 (141)
124 PRK07279 dnaE DNA polymerase I 21.2 79 0.0017 36.3 3.0 47 218-264 260-317 (1034)
125 PF00916 Sulfate_transp: Sulfa 21.1 3.2E+02 0.007 25.1 6.6 76 238-317 196-273 (280)
126 PF10112 Halogen_Hydrol: 5-bro 21.0 4.5E+02 0.0097 23.6 7.3 36 268-304 8-43 (199)
127 PRK14471 F0F1 ATP synthase sub 20.9 2.3E+02 0.0049 24.7 5.3 30 182-211 13-44 (164)
128 PF02133 Transp_cyt_pur: Perme 20.3 1.7E+02 0.0036 28.9 4.8 59 138-197 5-63 (440)
129 TIGR01995 PTS-II-ABC-beta PTS 20.3 1.1E+03 0.024 25.4 14.2 23 185-207 209-231 (610)
130 PRK06231 F0F1 ATP synthase sub 20.1 2.6E+02 0.0055 25.8 5.7 34 180-213 51-86 (205)
131 PF11241 DUF3043: Protein of u 20.1 5.1E+02 0.011 23.9 7.5 25 289-313 103-128 (170)
No 1
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=100.00 E-value=3.7e-38 Score=264.65 Aligned_cols=121 Identities=47% Similarity=0.824 Sum_probs=117.8
Q ss_pred hhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHH
Q 020708 160 ELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLML 239 (322)
Q Consensus 160 ElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaL 239 (322)
|+|||||+|+++|+||+.++++|++||++|+|+++++++++.+|+++ .+..++++++..+|++|+++++||||++||++
T Consensus 1 ElrgaIP~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~-~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~l 79 (121)
T PF06695_consen 1 ELRGAIPLGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKR-KPWLKKFYEWLEKKAEKKSKKIEKYGFWGLAL 79 (121)
T ss_pred CchhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999999999999999999999999987 67889999999999999889999999999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 020708 240 FVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLL 281 (322)
Q Consensus 240 FVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvI 281 (322)
||+||+|+||+||||++|++|||++++++.++++|+++|++|
T Consensus 80 FVaIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~I 121 (121)
T PF06695_consen 80 FVAIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGVI 121 (121)
T ss_pred HHhCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999985
No 2
>COG2426 Predicted membrane protein [Function unknown]
Probab=99.96 E-value=3.8e-29 Score=214.16 Aligned_cols=130 Identities=37% Similarity=0.663 Sum_probs=116.4
Q ss_pred cchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHH-HhHHHHHHHHhc-ccchhhH---HHHHHHHHHhhcc-cch
Q 020708 156 LPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFII-LYLKKFASFLAG-KNRSASQ---FLDMLFQKAKEKA-GPV 229 (322)
Q Consensus 156 lP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIi-l~~~kI~~wl~k-R~~~~kk---~~e~~~kRa~kk~-~~i 229 (322)
+|.+|.|+|||+|++.|++|+++...+++| .+|+++++ .+++.+..++.| ++..+++ ++++..+|++||+ ..+
T Consensus 1 mP~~E~Ryai~~gl~~G~~~~Eal~~silG-vL~l~~lL~~~l~~id~im~kl~~~rl~r~~~lY~~~~~r~~rka~~yV 79 (142)
T COG2426 1 MPTFELRYAIPLGLALGLSPLEALLLSILG-VLPLSLLLPLLLDPIDRIMLKLKWTRLQRPACLYDWLVNRTRRKAKGYV 79 (142)
T ss_pred CCcccccchhhhHHHhCCCHHHHHHHHHHH-HhhHHHHHHHHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHhccCcH
Confidence 599999999999999999999999999999 88887777 778877777765 1223455 8999999999985 559
Q ss_pred hhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 020708 230 EEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLV 286 (322)
Q Consensus 230 eRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls 286 (322)
||||+.||++|||||+|+||+||||+.|+++|++.+.++.++..|+++++.++++.+
T Consensus 80 ER~G~iGL~iFvAIPLP~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s 136 (142)
T COG2426 80 ERYGFIGLIIFVAIPLPGTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPS 136 (142)
T ss_pred hhhhhhhhhheeeccCCCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999998655
No 3
>PRK10847 hypothetical protein; Provisional
Probab=98.34 E-value=3.3e-05 Score=70.56 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=114.7
Q ss_pred hHHHHHHhhCCchHHHHHHHHHhc-------chhhhhhhHHH-HHHhC-----CchHHHHHHHHHhhhhHHHHHHHhHHH
Q 020708 133 LKIATALRRSSWPDEAVVFALATL-------PVLELRGAIPV-GYWMQ-----LKPVLLTVLSVLGNMVPVPFIILYLKK 199 (322)
Q Consensus 133 ~~~~~~~~~~gl~~~L~VFLLSml-------P~iElRgAIPl-GIalG-----L~P~~a~llavlGNmLpVpfIil~~~k 199 (322)
..+-+++.+.|.+-|..++++.++ |++.-+..+.+ |+..+ +|++.+++++++|+.+---+.++..++
T Consensus 16 ~~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~ 95 (219)
T PRK10847 16 VHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRL 95 (219)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777787777777766653 55554444443 44432 788999999999999998888888876
Q ss_pred HHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 020708 200 FASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAG 279 (322)
Q Consensus 200 I~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAg 279 (322)
.-+.+.+|.. ++..+ +++-+|..+.++|||...+.+.= =+|+... ..+.+|=+.+|+.++-+.+..+|.++++
T Consensus 96 ~G~~~l~~~~--~~~~~--~~~l~~~~~~~~r~G~~~v~i~R--fiP~~R~-~~~~~aG~~~m~~~~F~~~~~lg~~~W~ 168 (219)
T PRK10847 96 FGEKLFSNPN--SKIFR--RSYLDKTHQFYEKHGGKTIILAR--FVPIVRT-FAPFVAGMGHMSYRHFAAYNVIGALLWV 168 (219)
T ss_pred hCHHHhhccc--cccCC--HHHHHHHHHHHHHcCCEEEEeeC--CccchHh-HHHHHhHhcCCChHHHHHHHHHHHHHHH
Confidence 5432221110 11100 12223333458999986555433 4466663 4678899999999999999999999999
Q ss_pred HHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020708 280 LLVNLLVN-LG-------LKYAIVTGAILFIISTFMWSTLRSIRKSL 318 (322)
Q Consensus 280 vIVtlls~-lG-------l~~~~i~giil~~~~~~~w~~~~~~~~~~ 318 (322)
.+...+-+ +| ....+++++++..+..+.+..+|+-|+.-
T Consensus 169 ~~~~~~Gy~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 215 (219)
T PRK10847 169 LLFTYAGYFFGTLPFVQDNLKLLIVGIIVVSILPGVIEIWRHKRAAA 215 (219)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88776544 22 11124455555555556677888776653
No 4
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=97.85 E-value=0.00034 Score=56.27 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=77.0
Q ss_pred chHHHHHHHHHhhhhHHHHHHHhHHHHH-HHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCC-CcchHH
Q 020708 174 KPVLLTVLSVLGNMVPVPFIILYLKKFA-SFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPF-PGTGAW 251 (322)
Q Consensus 174 ~P~~a~llavlGNmLpVpfIil~~~kI~-~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPL-PgTGAw 251 (322)
+++..++++.+|+++-....++..++.. +...++.+ .++ -.+|-++..+.+||||.+.+.+.-.+|. |. .
T Consensus 15 g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~g~~~l~~~~~~P~~P~---~ 86 (123)
T PF09335_consen 15 GPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLR-KKK----RIKRIERIERWFQKYGFWVLFLSRFIPGLPF---D 86 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-chH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHccH---H
Confidence 6788899999999999988888888776 33333211 111 1122233445689999998888887773 54 6
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 020708 252 TGAFIAAILDMPFWSALSANFFGVVIAGLLVNLL 285 (322)
Q Consensus 252 TGALIA~lLGm~~kka~laI~lGVlIAgvIVtll 285 (322)
.-+.++-+.+|+.++-+.+.++|.+.+.++...+
T Consensus 87 ~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~ 120 (123)
T PF09335_consen 87 VVNYLAGITRMPFRRFFLASLIGKLPWTILYVLL 120 (123)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999877654
No 5
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=97.44 E-value=0.011 Score=53.85 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=89.3
Q ss_pred hcchhhhhhhHHHH-HH--h-CCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchh
Q 020708 155 TLPVLELRGAIPVG-YW--M-QLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVE 230 (322)
Q Consensus 155 mlP~iElRgAIPlG-Ia--l-GL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ie 230 (322)
..|+++-+...+.+ +. . .+|++.+.+++++|+++---..++..++.-+...+|....+.+ -.++-+|.++.+|
T Consensus 32 ~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~---~~~~l~~a~~~f~ 108 (208)
T COG0586 32 VGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLL---KRKKLDKAELLFE 108 (208)
T ss_pred cCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccC---CHHHHHHHHHHHH
Confidence 56888888888875 32 2 4889999999999999988888888776654333321111100 0233344445699
Q ss_pred hhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 231 EFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN 287 (322)
Q Consensus 231 RYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~ 287 (322)
|||..-+.+-=-+|. .= ...++.|=+.+|+.++-..+..+|.++|+.+.+.+.+
T Consensus 109 r~G~~~vf~~RFip~--vR-t~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy 162 (208)
T COG0586 109 RHGLFAIFLGRFIPG--VR-TLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGY 162 (208)
T ss_pred HcCchhhhhhcccch--hH-hhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887777554453 22 4456678889999999999999999999988887766
No 6
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.08 Score=49.28 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=95.7
Q ss_pred hHHHHHHhhCCchHHHH----HHHHHhcchhhhhhhHHHHHHhCC--chHHHHHHHHHhhhhHHHHHHHhHHHHHH-HHh
Q 020708 133 LKIATALRRSSWPDEAV----VFALATLPVLELRGAIPVGYWMQL--KPVLLTVLSVLGNMVPVPFIILYLKKFAS-FLA 205 (322)
Q Consensus 133 ~~~~~~~~~~gl~~~L~----VFLLSmlP~iElRgAIPlGIalGL--~P~~a~llavlGNmLpVpfIil~~~kI~~-wl~ 205 (322)
..+.+|..+.|.+-.+. ..+...+|++ -+.++..+.|. .|+.-.+.+++|-++.-....++.+..-+ |.+
T Consensus 36 ~~l~~~i~~~g~~~pl~~fil~~l~~~~~~i---P~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~ 112 (223)
T COG0398 36 ETLREWIQAYGALGPLVFFILLYLVATLPII---PGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVL 112 (223)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677777777766655 3333344444 44455554443 57888999999999888888887776653 332
Q ss_pred cccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q 020708 206 GKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLL 285 (322)
Q Consensus 206 kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtll 285 (322)
++.. + .++-+|-.+.+||.|++-+.+.=.+| .+..-.-+.+|-+.+++.|+-..+..+|.+-..++.+.+
T Consensus 113 ~~~~--~------~~~~~~~~~~~~~~g~~~i~~lrl~P--~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~ 182 (223)
T COG0398 113 KFVG--G------KEKVQRIDAGLERNGFWAILLLRLIP--IFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYL 182 (223)
T ss_pred HHhc--c------cHHHHHHHHHHHhCChHHHHHHHHhh--cCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHH
Confidence 2100 0 02233344558999988888877555 455577789999999999999999999998888777765
Q ss_pred H
Q 020708 286 V 286 (322)
Q Consensus 286 s 286 (322)
-
T Consensus 183 G 183 (223)
T COG0398 183 G 183 (223)
T ss_pred H
Confidence 5
No 7
>COG1238 Predicted membrane protein [Function unknown]
Probab=96.47 E-value=0.1 Score=46.80 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=86.4
Q ss_pred HhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhccc-chhhh
Q 020708 154 ATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAG-PVEEF 232 (322)
Q Consensus 154 SmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~-~ieRY 232 (322)
+.+=.+--+..+.-.+..|.|++....++.+||.+=-..=+++.+...+...++ +... -.++.++..+ ..+||
T Consensus 30 at~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ry 103 (161)
T COG1238 30 ATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR-----WFPG-SEEALEKLQEKWYRRY 103 (161)
T ss_pred HHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH-----hhcc-hHHHHHHHHHHHHHHH
Confidence 333334445555555667799999999999999988777777776666555442 1110 1223333333 58999
Q ss_pred hHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 233 QWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN 287 (322)
Q Consensus 233 G~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~ 287 (322)
|.+.|.+-..-|+ | =.=|++|=.++++++..+..+++|=..--+.++.+..
T Consensus 104 g~~~ll~s~lp~i---g-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~ 154 (161)
T COG1238 104 GVWTLLLSWLPPI---G-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTL 154 (161)
T ss_pred HHHHHHHHhcccc---c-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988775444 4 6778899999999999999999998877777666554
No 8
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=84.45 E-value=35 Score=33.82 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=51.6
Q ss_pred hhhhhHHHHHHh----hhcCCCc-chHH-H-HHHHHHHhCCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 020708 229 VEEFQWLGLMLF----VAVPFPG-TGAW-T-GAFIAAILDMPFWSALSANFFGVVIAGLLVN--LLVNLGLKYAIVTGAI 299 (322)
Q Consensus 229 ieRYG~~GLaLF----VAIPLPg-TGAw-T-GALIA~lLGm~~kka~laI~lGVlIAgvIVt--lls~lGl~~~~i~gii 299 (322)
.-..|..+-.+| .-+|+|+ |..+ . +++++.++| .+.++.++++..++-++..+ .++.+|.+.- ..|++
T Consensus 40 ~pllg~l~A~~F~l~~in~pip~G~s~Hllg~~L~alllG--P~~A~la~~ivLllQallfg~GGl~alGaN~l-~ma~~ 116 (322)
T PRK07331 40 MPLLGIAAAFSFLIMMFNVPLPGGTTGHAVGGTLIAILLG--PWAACLAVTVALAIQALLFGDGGILAFGANCF-NMAFI 116 (322)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHH
Confidence 566777666555 2357663 3333 3 356666677 67778877777777776554 3344555554 55666
Q ss_pred HHHHHHHHHHHHHHH
Q 020708 300 LFIISTFMWSTLRSI 314 (322)
Q Consensus 300 l~~~~~~~w~~~~~~ 314 (322)
..++++.+|..+|+.
T Consensus 117 ~~~v~y~iyr~~~~~ 131 (322)
T PRK07331 117 MPFVGYYIYKFIKKW 131 (322)
T ss_pred HHHHHHHHHHHHHhh
Confidence 677788888776643
No 9
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=77.94 E-value=44 Score=28.68 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=44.1
Q ss_pred HHHHhcch--hhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhc
Q 020708 151 FALATLPV--LELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAG 206 (322)
Q Consensus 151 FLLSmlP~--iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~k 206 (322)
++++++|. +-.-.++.++.....|...+.+.+.++|-+.+|+++++.-++-+++..
T Consensus 30 ~fig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~nPlt~~~i~~~~y~vG~~ll~ 87 (154)
T PF09835_consen 30 VFIGFLPIFGLQTVLAIALALLFRLNKPAAILGTWISNPLTIPPIYPLSYRVGSFLLG 87 (154)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 56679999 455566667778899999999999999999999888776666666654
No 10
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=76.76 E-value=76 Score=30.80 Aligned_cols=22 Identities=0% Similarity=-0.370 Sum_probs=15.8
Q ss_pred hhhHHHHHHhCCchHHHHHHHH
Q 020708 162 RGAIPVGYWMQLKPVLLTVLSV 183 (322)
Q Consensus 162 RgAIPlGIalGL~P~~a~llav 183 (322)
..++++++..|.++-.+..+++
T Consensus 79 iigta~AI~sG~~~e~AvalAv 100 (262)
T PRK15065 79 VISAILVIAGHQGIGTGIAIAI 100 (262)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4567788888999977655443
No 11
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=76.63 E-value=87 Score=31.43 Aligned_cols=125 Identities=19% Similarity=0.121 Sum_probs=57.9
Q ss_pred hhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHH
Q 020708 140 RRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLF 219 (322)
Q Consensus 140 ~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~ 219 (322)
|+.|++.....+..+.+--...-|..-.++..|++++........ .....+.++..++.+..+| . ...-..|.++
T Consensus 40 r~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~~T~~e~l~ 114 (471)
T TIGR02119 40 RSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVP---TGYFVLGVLGKKFAIISRK-Y-NAITINDVLK 114 (471)
T ss_pred CcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-c-CCccHHHHHH
Confidence 455665555555555555555556666677778765433222111 1111122334444443332 1 2223456665
Q ss_pred HHHhhcccchhhhhHHHHHHh--hhcCCCcchHHHHHHHHHHhCCchHHHHHHHHH
Q 020708 220 QKAKEKAGPVEEFQWLGLMLF--VAVPFPGTGAWTGAFIAAILDMPFWSALSANFF 273 (322)
Q Consensus 220 kRa~kk~~~ieRYG~~GLaLF--VAIPLPgTGAwTGALIA~lLGm~~kka~laI~l 273 (322)
+|-.++. .+.+...-..++ ..+-....| .|.++..++|++.+..+.....
T Consensus 115 ~Ryg~~~--~~~~~~i~~i~~~~~~~~~ql~g--~g~~l~~~~gi~~~~~iii~~~ 166 (471)
T TIGR02119 115 ARYNNKF--LVWLSSISLLVFFFSAMVAQFIG--GARLIESLTGLSYLTALFIFSS 166 (471)
T ss_pred HHcCCCc--hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCHHHHHHHHHH
Confidence 5544322 233322221111 111112222 3667778889998876554433
No 12
>PRK06265 cobalt transport protein CbiM; Validated
Probab=74.09 E-value=42 Score=30.60 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=51.8
Q ss_pred hhhhhHHHHHHhhh----cCCCcchHH--HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 020708 229 VEEFQWLGLMLFVA----VPFPGTGAW--TGAFIAAILDMPFWSALSANFFGVVIAGLLV--NLLVNLGLKYAIVTGAIL 300 (322)
Q Consensus 229 ieRYG~~GLaLFVA----IPLPgTGAw--TGALIA~lLGm~~kka~laI~lGVlIAgvIV--tlls~lGl~~~~i~giil 300 (322)
..+.++.|-.+|++ +|+|||..+ .+++++-++| |-++.++++..++-++.. ...+.+|.+.-... +..
T Consensus 36 ~~~~~~~~A~~f~~~~~~~pi~G~s~H~lg~~l~~lllG---~~A~l~~~i~L~~qallfg~gg~~~lG~N~l~m~-~p~ 111 (199)
T PRK06265 36 IPLVALLAAAFFVASLIHVPIGPTSVHLVLNGLAGIVLG---WAAFPAILVALLLQALLFGFGGLTVLGVNTLNMA-LPA 111 (199)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCcchHHhhHHHHHHHHh---HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHH
Confidence 44566777777664 566665554 3567777788 477777777766666444 33445677765544 665
Q ss_pred HHHHHHHHHHHHHHh
Q 020708 301 FIISTFMWSTLRSIR 315 (322)
Q Consensus 301 ~~~~~~~w~~~~~~~ 315 (322)
.+..+..+...|++.
T Consensus 112 ~~~~~~~~~~~~~~~ 126 (199)
T PRK06265 112 VLAGYLFRKLLRRTP 126 (199)
T ss_pred HHHHHHHHHHHhhcc
Confidence 555666666666543
No 13
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=73.20 E-value=12 Score=33.20 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=28.0
Q ss_pred HHHHHhCCchHHHHHHHHHhhhhHHH--HHHHhHHHHHHHHhcccchh
Q 020708 166 PVGYWMQLKPVLLTVLSVLGNMVPVP--FIILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 166 PlGIalGL~P~~a~llavlGNmLpVp--fIil~~~kI~~wl~kR~~~~ 211 (322)
.+|-+.|+||+..++ .+.|++... +-.++++++.+.+.+|....
T Consensus 9 ~~~~~~~~~~~t~~~--~iInFliL~~lL~~~l~~pi~~~l~~R~~~I 54 (173)
T PRK13453 9 VLGAAGGVEWGTVIV--TVLTFIVLLALLKKFAWGPLKDVMDKRERDI 54 (173)
T ss_pred HHHhhcCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999865433 334544443 33566888999888764443
No 14
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=70.05 E-value=1e+02 Score=29.18 Aligned_cols=82 Identities=26% Similarity=0.393 Sum_probs=46.6
Q ss_pred hhhhhHHHHHHhh----hcCCC-cc-hHHH-HHHHHHHhCCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 020708 229 VEEFQWLGLMLFV----AVPFP-GT-GAWT-GAFIAAILDMPFWSALSANFFGVVIAGLLVN--LLVNLGLKYAIVTGAI 299 (322)
Q Consensus 229 ieRYG~~GLaLFV----AIPLP-gT-GAwT-GALIA~lLGm~~kka~laI~lGVlIAgvIVt--lls~lGl~~~~i~gii 299 (322)
+...+..+..+|+ -+|+| ++ +.-. +++++.++| .+.++.++++..++-++... ..+.+|.+.. ..|++
T Consensus 40 ~~~~~llaA~~fvl~~i~~pi~~G~s~H~lg~~l~~lllG--p~~a~la~~l~lllqal~fg~GGi~~LG~N~l-~ma~v 116 (230)
T PRK11909 40 VPLLAIGAAFSFVIMMFNVPIPGGTTAHAVGGTLIAILLG--PWAAVISISVALVIQALLFGDGGITAIGANCF-NMAFV 116 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHHH
Confidence 4555665655553 35776 44 3333 344555556 66677777777666665443 2344555554 55555
Q ss_pred HHHHHHHHHHHHHH
Q 020708 300 LFIISTFMWSTLRS 313 (322)
Q Consensus 300 l~~~~~~~w~~~~~ 313 (322)
..++++..|..+|+
T Consensus 117 ~~~~~y~i~r~l~~ 130 (230)
T PRK11909 117 LPFVGYYVYKLLSI 130 (230)
T ss_pred HHHHHHHHHHHHHh
Confidence 55667777776653
No 15
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=69.44 E-value=1.3e+02 Score=30.18 Aligned_cols=70 Identities=29% Similarity=0.318 Sum_probs=51.0
Q ss_pred HHHHHHhhhcCCCcchHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q 020708 234 WLGLMLFVAVPFPGTGAWTGAFIAAILDM---PFWSALSANFFGVVIAGLLVNLLVN--------------LGLKYAIVT 296 (322)
Q Consensus 234 ~~GLaLFVAIPLPgTGAwTGALIA~lLGm---~~kka~laI~lGVlIAgvIVtlls~--------------lGl~~~~i~ 296 (322)
..-..+.+++-=|.+||..|+..=..+|+ ++.+++.-=-+|-.++-++++=+.. .+++.+.+.
T Consensus 124 ~l~f~v~ga~v~p~l~Aiig~~lL~~~g~~~~~~~~~~~~WwlgdA~giL~~aPl~i~~~~~~~~~~~~~~~~l~ea~vl 203 (308)
T COG3447 124 WLRFLLGGAIVPPLLGAIIGSVLLVVLGTPGDDFSEAWFTWWLGDAIGILALAPLGIVIRPNWLRRHRLLRLQLVEALVL 203 (308)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhHHhhhhHhHHHHHHHH
Confidence 33444566555589999999999999999 5677777777788888777765444 677888877
Q ss_pred HHHHHHH
Q 020708 297 GAILFII 303 (322)
Q Consensus 297 giil~~~ 303 (322)
++.|.++
T Consensus 204 ~~~L~ls 210 (308)
T COG3447 204 AITLLLS 210 (308)
T ss_pred HHHHHHH
Confidence 7665544
No 16
>PRK09695 glycolate transporter; Provisional
Probab=68.88 E-value=1.1e+02 Score=32.61 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=35.7
Q ss_pred HHHHhcchhhhhh--hHHHH------HHhCCchHHHHHHHHHhhhhHHHHHHHhHH
Q 020708 151 FALATLPVLELRG--AIPVG------YWMQLKPVLLTVLSVLGNMVPVPFIILYLK 198 (322)
Q Consensus 151 FLLSmlP~iElRg--AIPlG------IalGL~P~~a~llavlGNmLpVpfIil~~~ 198 (322)
.-.++-+++|--. +.|++ +.+|++|..+..+|.+||..|+++=.....
T Consensus 121 I~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns~pvafGavG~P 176 (560)
T PRK09695 121 IGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANTAPVAFGALGVP 176 (560)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcCCCccccccccc
Confidence 3446778888776 44444 367999999999999999998876555443
No 17
>PRK11375 allantoin permease; Provisional
Probab=67.35 E-value=17 Score=37.33 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 251 WTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN 287 (322)
Q Consensus 251 wTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~ 287 (322)
+.|+++ .+|++.|+++.++++|.++.++.+++...
T Consensus 48 ~~g~~l--~~GLs~~~ai~ai~lG~~i~~~~~~l~g~ 82 (484)
T PRK11375 48 MVGGFF--ILGLSTFSIMLAIILSAFFIAAVMVLNGA 82 (484)
T ss_pred HHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566766 48999999999999999999999988776
No 18
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=66.78 E-value=1.3e+02 Score=29.27 Aligned_cols=22 Identities=5% Similarity=-0.352 Sum_probs=15.4
Q ss_pred hhhHHHHHHhCCchHHHHHHHH
Q 020708 162 RGAIPVGYWMQLKPVLLTVLSV 183 (322)
Q Consensus 162 RgAIPlGIalGL~P~~a~llav 183 (322)
..++++++..|.++-.+..+++
T Consensus 79 iigta~AI~sG~~~e~AialAv 100 (265)
T TIGR00822 79 IISTILVISGHQSIGTGIALAL 100 (265)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4567788888998876655443
No 19
>PRK11017 codB cytosine permease; Provisional
Probab=66.42 E-value=7.4 Score=38.64 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 250 AWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN 287 (322)
Q Consensus 250 AwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~ 287 (322)
.+.|+.++ +|++.++++.++.+|.++.++.+++...
T Consensus 29 ~~~g~~l~--~GLs~~~ai~aiilG~~i~~~~~~l~~~ 64 (404)
T PRK11017 29 MWAGGTLG--TGLSFVDFLLAVLIGNLLLGIYTAALGY 64 (404)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666653 8999999999999999999988887776
No 20
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=65.92 E-value=1.3e+02 Score=29.11 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=15.6
Q ss_pred hhhHHHHHHhCCchHHHHHHHH
Q 020708 162 RGAIPVGYWMQLKPVLLTVLSV 183 (322)
Q Consensus 162 RgAIPlGIalGL~P~~a~llav 183 (322)
..++++++..|.++-.+..+++
T Consensus 80 iigta~aI~~g~~~e~AialAv 101 (267)
T PRK09757 80 LMTTVIAWSTGVDAKTAIGLGL 101 (267)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888888999876655444
No 21
>PRK09921 permease DsdX; Provisional
Probab=65.51 E-value=1.7e+02 Score=30.18 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=74.6
Q ss_pred chhhhh-hhHHHHHHhCCchHH--HHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhh
Q 020708 157 PVLELR-GAIPVGYWMQLKPVL--LTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQ 233 (322)
Q Consensus 157 P~iElR-gAIPlGIalGL~P~~--a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG 233 (322)
|++-+- +++-+|+..|+|+-. ..+..-+|+++.-.-+++++.-+...+.++..-.+++.+.+.+. + ++-.++-
T Consensus 29 ~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~-~---~~~~~~a 104 (445)
T PRK09921 29 PFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRC-R---WLSADVI 104 (445)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH-h---hhhHHHH
Confidence 444444 778888999998754 44445555666322223333333332222244455555554322 1 2223344
Q ss_pred HHHHHHhhhcCCCcchH--HHHH---HHHHHhCCchHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHH
Q 020708 234 WLGLMLFVAVPFPGTGA--WTGA---FIAAILDMPFWSALSANFFGVVIAGL-------LVNLLVNLGL--KYAIVTGAI 299 (322)
Q Consensus 234 ~~GLaLFVAIPLPgTGA--wTGA---LIA~lLGm~~kka~laI~lGVlIAgv-------IVtlls~lGl--~~~~i~gii 299 (322)
.....+.++||.+.-+. ...- -+++-.+.+.-+.......|....-. ++.....+|. ...++.|++
T Consensus 105 ~~~~gll~~IpvF~~~~~vil~Pl~~~lak~~~~s~~~~~~~~~~~~~~~h~~vPp~Pg~~~~a~~lg~~lg~~~l~Gl~ 184 (445)
T PRK09921 105 MVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPPHPAALFVANKLGADIGSVIVYGLL 184 (445)
T ss_pred HHHHHHHHcccHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhHhcCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 55556666778875433 2222 23444566643333333333322221 2344555664 334555666
Q ss_pred HHHHH-HH-HHHHHHHHhhh
Q 020708 300 LFIIS-TF-MWSTLRSIRKS 317 (322)
Q Consensus 300 l~~~~-~~-~w~~~~~~~~~ 317 (322)
.++.. .. .|-++|.+.|.
T Consensus 185 ~~i~~~~i~~~~~~~~~~~~ 204 (445)
T PRK09921 185 VGLMASLVGGPLFLKFLGNR 204 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55432 21 33344555553
No 22
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=65.06 E-value=1.9e+02 Score=30.57 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=37.4
Q ss_pred HHHHhcchhhhhh--hHHHH------HHhCCchHHHHHHHHHhhhhHHHHHHHhHHH
Q 020708 151 FALATLPVLELRG--AIPVG------YWMQLKPVLLTVLSVLGNMVPVPFIILYLKK 199 (322)
Q Consensus 151 FLLSmlP~iElRg--AIPlG------IalGL~P~~a~llavlGNmLpVpfIil~~~k 199 (322)
.-.++-+++|--. +.|++ +.+|++|..+..+|.+||..|+++=.....-
T Consensus 106 i~~~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n~~~v~fGa~G~pi 162 (522)
T PF02652_consen 106 IAFGFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGNSAPVSFGAVGTPI 162 (522)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHcCcchhhHhhhHHH
Confidence 4456778898533 34544 4689999999999999999999887776654
No 23
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.44 E-value=11 Score=32.79 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020708 289 GLKYAIVTGAILFIISTFMWSTLRSIRK 316 (322)
Q Consensus 289 Gl~~~~i~giil~~~~~~~w~~~~~~~~ 316 (322)
|+-+|+++|+|+.++ ...|.+.|..||
T Consensus 68 ~Ii~gv~aGvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 444455555555332 334444555555
No 24
>PF05128 DUF697: Domain of unknown function (DUF697) ; InterPro: IPR021147 Proteins in this entry have no known function.
Probab=63.56 E-value=1e+02 Score=26.90 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred hhcccchhhhhHHHHHHhhhcCCCcchHHHHH--------HHHHHhCCchHHHHHHHHHHHH
Q 020708 223 KEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGA--------FIAAILDMPFWSALSANFFGVV 276 (322)
Q Consensus 223 ~kk~~~ieRYG~~GLaLFVAIPLPgTGAwTGA--------LIA~lLGm~~kka~laI~lGVl 276 (322)
++..+.+++|-+..=..-.+.|+|+....... -++.+.|++..+.-..-+++.+
T Consensus 20 ~~A~~~I~~~a~~~A~~~a~~PiP~~D~~~~~~iq~~Mi~~i~~iYG~~~~~~~~~~l~~~l 81 (162)
T PF05128_consen 20 QRANRIIKRYAWLAAGAVAASPIPFLDAAALLAIQAKMIREIAKIYGLRPSQAGAKELISSL 81 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34445699997543222334599876655443 3677888888644333333333
No 25
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=63.38 E-value=1.4e+02 Score=28.30 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcchhh---------hhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHH
Q 020708 145 PDEAVVFALATLPVLE---------LRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFL 215 (322)
Q Consensus 145 ~~~L~VFLLSmlP~iE---------lRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~ 215 (322)
.--+-...++.+|+-. -..+.++++..|.++-.+..+++ |+-.+.-..+.+.+-.. ..+.
T Consensus 53 Ga~leL~~lG~~~~Gga~ppd~~~a~ii~ta~ai~sg~~~~~avalAv-----Pv~~lg~~l~~~~~~~n------~~~~ 121 (238)
T PF03609_consen 53 GATLELMYLGVVPIGGAVPPDYSSAAIIGTALAILSGQDPEVAVALAV-----PVGILGQQLDNLLRTIN------SFFV 121 (238)
T ss_pred HHHHHHHHHhcccccCcCCCchhHHHHHHHHHHhhcccchHHHHHHHH-----HHHHHHHHHHHHHHHHH------HHHH
Confidence 3344445555555432 24566777888999877766554 55444444444443111 1112
Q ss_pred HHHHHHHhh-cccchhhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 216 DMLFQKAKE-KAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKYAI 294 (322)
Q Consensus 216 e~~~kRa~k-k~~~ieRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~~~ 294 (322)
++-.|..+| +.++++|..+.+..++. ......-..++..+|-+.-+.+.-..=..+..++-+.......+++++
T Consensus 122 ~~adk~ae~gn~~~i~~~~~~~~~~~~-----~~~~v~~~fl~~~~G~~~v~~~~~~iP~~v~~gl~vagg~LPAvGfAm 196 (238)
T PF03609_consen 122 HRADKAAEEGNYKKINRIHWIGPILFF-----LIYFVPPVFLAVYFGSDAVQALLNAIPEWVLNGLNVAGGMLPAVGFAM 196 (238)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333 33557777766653332 111111123444455444444443333344444444433333333333
No 26
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=63.13 E-value=17 Score=30.44 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCC
Q 020708 301 FIISTFMWSTLRSIRKSLGSS 321 (322)
Q Consensus 301 ~~~~~~~w~~~~~~~~~~~~~ 321 (322)
++++...|..+|.+|++-+++
T Consensus 49 ~i~g~~~~~~~r~lK~g~g~~ 69 (101)
T PRK13707 49 IIAAVLVWFGIRKLKKGRGSS 69 (101)
T ss_pred HHHHHHHHHHHHHHHcCCChh
Confidence 333666788999999987764
No 27
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=62.50 E-value=82 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020708 295 VTGAILFIISTFMWSTLRSI 314 (322)
Q Consensus 295 i~giil~~~~~~~w~~~~~~ 314 (322)
+.|+++++.+++++..++.-
T Consensus 107 ~~GL~vai~~~~~~~~l~~~ 126 (139)
T PF01618_consen 107 AYGLVVAIPALPFYNYLKRR 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666553
No 28
>PRK10263 DNA translocase FtsK; Provisional
Probab=60.79 E-value=1.4e+02 Score=35.33 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=13.1
Q ss_pred hhHHHHHHHHhhhhHHHhhcCC
Q 020708 96 LKFLLWVVFWASLSLVWFSTSG 117 (322)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ 117 (322)
+..++++++..-+.++.+..+-
T Consensus 25 ~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3445566666666666666543
No 29
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=60.74 E-value=1.8e+02 Score=28.78 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCCC-cchHHHHHHH
Q 020708 178 LTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPFP-GTGAWTGAFI 256 (322)
Q Consensus 178 a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPLP-gTGAwTGALI 256 (322)
+....++.-.+.+|+=+...=.+.||-++ .+..++.+...+.- ..-+===||..|+.+||. ++- +..++.|++.
T Consensus 76 Tl~~~~~~~li~~PiGv~aaIYL~EYa~~--~~~t~~ir~~i~~L--a~vPSIV~GLFg~~~fV~-~~g~~~S~laGaLa 150 (292)
T COG0581 76 TLYLILLAILIGVPLGIGAGIYLAEYAKK--SRLTKVIRFAIDIL--ASVPSIVYGLFGLGFFVV-TLGFGFSALAGALA 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHH--hcCchHHHHHHHHHHHHH-HHCCccHHHHHHHH
Confidence 44444555555666655555556666633 23444444333321 122223489999999993 343 4667777763
Q ss_pred ---------------------------HHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 020708 257 ---------------------------AAILDMPFWSALSANFFGVVIAGLLVNLLV 286 (322)
Q Consensus 257 ---------------------------A~lLGm~~kka~laI~lGVlIAgvIVtlls 286 (322)
|..||.++|+++.-+.+-...-|++.+++-
T Consensus 151 Lall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviL 207 (292)
T COG0581 151 LALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVIL 207 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCcHHHHHHHHHHHhhHhHHHHHHHH
Confidence 677899999988888887777766655443
No 30
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=59.19 E-value=2.2e+02 Score=29.45 Aligned_cols=154 Identities=18% Similarity=0.094 Sum_probs=78.6
Q ss_pred hhHHHHHHhCCchH--HHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHh
Q 020708 163 GAIPVGYWMQLKPV--LLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLF 240 (322)
Q Consensus 163 gAIPlGIalGL~P~--~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLF 240 (322)
+++-+|+..|+|+. ...+-.=.||++.-.-++..+.-+.-.+.++..-.+|+.+.+.|+-.+|+. .|...-....
T Consensus 31 ~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~---~~A~~i~g~i 107 (441)
T PF02447_consen 31 VALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRA---PLALAITGFI 107 (441)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcc---cHHHHHHHHH
Confidence 67788999999994 455566678887776655555555543333345556666766655444333 3333333445
Q ss_pred hhcCCCc-chHHHH----HHHHHHhCCchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHHHHHHH-
Q 020708 241 VAVPFPG-TGAWTG----AFIAAILDMPFWSALSANFFGVVIAGL-------LVNLLVNLGLKYA--IVTGAILFIIST- 305 (322)
Q Consensus 241 VAIPLPg-TGAwTG----ALIA~lLGm~~kka~laI~lGVlIAgv-------IVtlls~lGl~~~--~i~giil~~~~~- 305 (322)
++||.-. +|-..= =-+|+-.|.+......+...|...+-. -+++...+|.|++ ++.|++..+...
T Consensus 108 v~IPvF~dv~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPPtPgpla~a~~lg~dlG~~il~Gl~vaip~~~ 187 (441)
T PF02447_consen 108 VGIPVFFDVGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVPPTPGPLAAAGALGADLGLVILYGLIVAIPAML 187 (441)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHhCCChhHHHHHhHHHHHHHHH
Confidence 5667531 111111 113344444443444444444433311 1334445666554 345555544422
Q ss_pred -HHHHHHHHHhhhcC
Q 020708 306 -FMWSTLRSIRKSLG 319 (322)
Q Consensus 306 -~~w~~~~~~~~~~~ 319 (322)
-.|-.-|.++|...
T Consensus 188 iag~~~~~~~~~~~~ 202 (441)
T PF02447_consen 188 IAGPLYGRFISKRIP 202 (441)
T ss_pred HHHHHHHHHhccCCC
Confidence 24555666666543
No 31
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=57.74 E-value=15 Score=36.12 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 249 GAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLGL 290 (322)
Q Consensus 249 GAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl 290 (322)
.-.+|+.. ..+|++.|+++.++++|.++.++++++.+..|-
T Consensus 27 ~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~ 67 (440)
T PF02133_consen 27 TFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGP 67 (440)
T ss_dssp HH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567766 778999999999999999999999998887444
No 32
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=54.78 E-value=2.9e+02 Score=29.31 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=36.9
Q ss_pred HHHHHHhcchhhh-hh-hHHHH------HHhCCchHHHHHHHHHhhhhHHHHHHHhHH
Q 020708 149 VVFALATLPVLEL-RG-AIPVG------YWMQLKPVLLTVLSVLGNMVPVPFIILYLK 198 (322)
Q Consensus 149 ~VFLLSmlP~iEl-Rg-AIPlG------IalGL~P~~a~llavlGNmLpVpfIil~~~ 198 (322)
...-.++-+++|- -| +.|++ +.+|++|..+..+|.+||..|+++=.....
T Consensus 110 llI~~~Fg~flEg~aGFGtpvAI~aplLv~LGf~Pl~Aa~i~Li~ns~~v~fGalG~P 167 (530)
T TIGR00795 110 LLIGFCFGAFLEGAAGFGTPVAITAAILVGLGFKPLYAAGLCLIANTAPVAFGAVGIP 167 (530)
T ss_pred HHHHHHHHHHHHHhhccCCcHHHHHHHHHHcCCChHHHHHHHHHHcCCCccchhhhHH
Confidence 3355667888987 33 34443 367999999999999999998877655554
No 33
>COG1288 Predicted membrane protein [Function unknown]
Probab=54.18 E-value=1.5e+02 Score=31.50 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=16.0
Q ss_pred HHHHHHhCCchHHHHHHHHHh
Q 020708 165 IPVGYWMQLKPVLLTVLSVLG 185 (322)
Q Consensus 165 IPlGIalGL~P~~a~llavlG 185 (322)
+|+-+.+|.|+........+|
T Consensus 166 iPv~ialGyDsi~~va~i~lg 186 (481)
T COG1288 166 IPLMVALGYDSITGVAIIYIG 186 (481)
T ss_pred HHHHHHhCCchHHHHHHHHHH
Confidence 677788888888777666665
No 34
>PRK10420 L-lactate permease; Provisional
Probab=53.92 E-value=2.6e+02 Score=29.86 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=35.9
Q ss_pred HHHHHhcchhhhh-h-hHHHH------HHhCCchHHHHHHHHHhhhhHHHHHHHhHH
Q 020708 150 VFALATLPVLELR-G-AIPVG------YWMQLKPVLLTVLSVLGNMVPVPFIILYLK 198 (322)
Q Consensus 150 VFLLSmlP~iElR-g-AIPlG------IalGL~P~~a~llavlGNmLpVpfIil~~~ 198 (322)
+.-..+-+++|-- | +.|++ +.+|++|..+..+|.+||..|+++=.....
T Consensus 120 lI~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li~ns~~v~fGavG~P 176 (551)
T PRK10420 120 IVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIP 176 (551)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHHHcCCccccccccch
Confidence 3455677888877 4 34444 367999999999999999988876554443
No 35
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=53.84 E-value=1.9e+02 Score=31.02 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=18.7
Q ss_pred HHhhhhHHHHHHHhHHHHHHHHhcc
Q 020708 183 VLGNMVPVPFIILYLKKFASFLAGK 207 (322)
Q Consensus 183 vlGNmLpVpfIil~~~kI~~wl~kR 207 (322)
++|.++|+++..++..++.+|++|.
T Consensus 98 ~~gsvip~il~~~~~~~vek~l~k~ 122 (639)
T PRK15083 98 FLGAMIAGPLGGWAIKHFDRWVDGK 122 (639)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888888777776553
No 36
>PRK08319 cobalt transport protein CbiM; Validated
Probab=53.04 E-value=2e+02 Score=26.90 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred chhhhhHHHHHHhh----hcC-CCcchHH--HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 020708 228 PVEEFQWLGLMLFV----AVP-FPGTGAW--TGAFIAAILDMPFWSALSANFFGVVIAGLLVN--LLVNLGLKYAIVTGA 298 (322)
Q Consensus 228 ~ieRYG~~GLaLFV----AIP-LPgTGAw--TGALIA~lLGm~~kka~laI~lGVlIAgvIVt--lls~lGl~~~~i~gi 298 (322)
+.-+.|....++|+ -+| .|+|..+ .+++++-++| .+-++.+.++..++-++... -.+.+|.+.- ..|+
T Consensus 41 ~~p~~~~~~a~~f~~~~i~~pi~~G~s~Hllg~~l~~lllG--p~~a~l~~~i~L~~qal~fg~Ggl~~lG~N~l-~m~~ 117 (224)
T PRK08319 41 QKPLLALAGAFIFVLSALKIPSVTGSCSHPTGTGLGAILFG--PAVTAVLGAIVLLFQALLLAHGGLTTLGANVF-SMAI 117 (224)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCcchhHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHhH
Confidence 45667666666663 345 2344444 3556666667 45555555555555554422 2333555543 4455
Q ss_pred HHHHHHHHHHHHHHH
Q 020708 299 ILFIISTFMWSTLRS 313 (322)
Q Consensus 299 il~~~~~~~w~~~~~ 313 (322)
+-.+++|..|..+|+
T Consensus 118 ~~~~~~y~~~~~~~~ 132 (224)
T PRK08319 118 VGPFVGYLVYKLLRK 132 (224)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555557777766665
No 37
>PRK09821 putative transporter; Provisional
Probab=52.35 E-value=3e+02 Score=28.76 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=71.7
Q ss_pred hhHHHHHHhCCchH--HHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHh
Q 020708 163 GAIPVGYWMQLKPV--LLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLF 240 (322)
Q Consensus 163 gAIPlGIalGL~P~--~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLF 240 (322)
.++-+|+..|+|+- ...+..=.||.+.-..++.++.-+.-.+.+...-.+++.+.+.|+..+|+..+ .-...|. .
T Consensus 35 ~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k~~~~-ai~i~~~--i 111 (454)
T PRK09821 35 VSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDKRTIA-ALTLAAF--I 111 (454)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCchHH-HHHHHHH--H
Confidence 45556777788762 23344445566665555555544444333323445666677666654443322 1222222 2
Q ss_pred hhcCCC-cchH----HHHHHHHHHhCCchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHHHHHH-HH
Q 020708 241 VAVPFP-GTGA----WTGAFIAAILDMPFWSALSANFFGVVI-------AGLLVNLLVNLGLKY--AIVTGAILFII-ST 305 (322)
Q Consensus 241 VAIPLP-gTGA----wTGALIA~lLGm~~kka~laI~lGVlI-------AgvIVtlls~lGl~~--~~i~giil~~~-~~ 305 (322)
++||.- -++- -..--+++-.+++.++....+..|... +--.++...++|.|. .++.|++..+. ..
T Consensus 112 lgIpvF~dv~fvil~Pl~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~a~~Lg~d~g~~~l~Giivaip~~i 191 (454)
T PRK09821 112 LGIPVFFDVGFIILAPIIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGI 191 (454)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 244542 1111 011224566677755554444323221 111223345555443 34455555554 44
Q ss_pred HHHHHHHHHhhhc
Q 020708 306 FMWSTLRSIRKSL 318 (322)
Q Consensus 306 ~~w~~~~~~~~~~ 318 (322)
..|-+.|.+.|..
T Consensus 192 ~g~~~~~~~~~~~ 204 (454)
T PRK09821 192 VGYFAAKIINRRQ 204 (454)
T ss_pred HHHHHHHHHhhcc
Confidence 4555666666643
No 38
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=51.56 E-value=45 Score=27.32 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC
Q 020708 296 TGAILFIISTFMWSTLRSIRKSLGS 320 (322)
Q Consensus 296 ~giil~~~~~~~w~~~~~~~~~~~~ 320 (322)
+|+++..+..+.|..+|.+|++-.+
T Consensus 41 ~g~~lg~~~~~~~~~lrr~K~g~~~ 65 (95)
T TIGR02762 41 IGLILGAAVMLIWKRLRRIKGGEGE 65 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 5555555533778779999998654
No 39
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=51.37 E-value=88 Score=26.38 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=31.6
Q ss_pred chhhhh---HHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 020708 228 PVEEFQ---WLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVN 283 (322)
Q Consensus 228 ~ieRYG---~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVt 283 (322)
.++.+| .+|+.+.+ |+ .-|+..|--+=.-++-+.+-++..+++|+++++.-+.
T Consensus 38 ~~~~l~~~g~IG~~~v~--pi-l~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 38 IWEGLGMFGLIGWSVAI--PT-LLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 366665 44444444 65 4555555555555666666777777777777665543
No 40
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=51.28 E-value=2.7e+02 Score=28.05 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=55.9
Q ss_pred hhHHHHHHhCCchHH--HHHHHHHhhhhHHHHHHHhHHHHH-HHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHH
Q 020708 163 GAIPVGYWMQLKPVL--LTVLSVLGNMVPVPFIILYLKKFA-SFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLML 239 (322)
Q Consensus 163 gAIPlGIalGL~P~~--a~llavlGNmLpVpfIil~~~kI~-~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaL 239 (322)
+++-+|+..|+|+.. .....-.||.+.-..++..+..+. +.+++ ..-.+++.+.+.++-.+|+ ..|...-...
T Consensus 31 ~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~-sGaa~~ia~~i~~~~g~~r---~~~a~~~~~~ 106 (440)
T TIGR00791 31 VSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLAD-SGAAQRIALTLLAKFGKSR---VQWAVVIAGL 106 (440)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHhcccc---hHHHHHHHHH
Confidence 466677778887754 223334444443333333333333 33433 4555666666665544432 2344442223
Q ss_pred hhhcCCCcc-hH-HHHHH---HHHHhCCchHHHHHHHHHHHHHHH
Q 020708 240 FVAVPFPGT-GA-WTGAF---IAAILDMPFWSALSANFFGVVIAG 279 (322)
Q Consensus 240 FVAIPLPgT-GA-wTGAL---IA~lLGm~~kka~laI~lGVlIAg 279 (322)
++++|...- |. ....+ +++-.|+++........+|...+.
T Consensus 107 ilgi~~f~~~~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~ 151 (440)
T TIGR00791 107 IVGLALFFEVGFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAH 151 (440)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 444553221 22 22222 456678888876666666655443
No 41
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=51.16 E-value=2.3e+02 Score=27.20 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=17.5
Q ss_pred HHHHHHhhCCchHHHHHHHHHhcchhhhhhhHHHH
Q 020708 134 KIATALRRSSWPDEAVVFALATLPVLELRGAIPVG 168 (322)
Q Consensus 134 ~~~~~~~~~gl~~~L~VFLLSmlP~iElRgAIPlG 168 (322)
++.++|.+.++...+...++++.-.+--.+++|++
T Consensus 39 ~~~~~l~~~~~~~~~~a~~~G~~~p~C~c~~~P~~ 73 (307)
T PF03773_consen 39 KVARWLGRSGFKGILLASLLGALLPVCSCGAVPVA 73 (307)
T ss_pred HHHHHcCCCcchHHHHHHHHHhccCCCcccHHHHH
Confidence 44555555555555554444444444444555554
No 42
>PRK10472 low affinity gluconate transporter; Provisional
Probab=49.50 E-value=3.3e+02 Score=28.40 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=73.8
Q ss_pred hhHHHHHHhCCchHHHHHHHH---Hhhhh-HHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHH
Q 020708 163 GAIPVGYWMQLKPVLLTVLSV---LGNMV-PVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLM 238 (322)
Q Consensus 163 gAIPlGIalGL~P~~a~llav---lGNmL-pVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLa 238 (322)
+++-+|+..|+|+ ..+.-.+ .|+.+ .+-.++.+.--+-+.++ +....+++.+.+.++-.+|+. .|...-..
T Consensus 35 ~Alivgl~~Gmp~-~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe-~SGaa~~IA~~i~~~fG~kr~---~~A~~l~g 109 (445)
T PRK10472 35 VSMGAGLFSGMPL-DKIAATMEKGMGGTLGFLAVVVALGAMFGKILH-ETGAVDQIAVKMLKSFGHSRA---HYAIGLAG 109 (445)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHcCcccH---HHHHHHHH
Confidence 5667778889988 3333333 55555 22222222222222333 345566666766555433332 23333333
Q ss_pred HhhhcCCC-cchHHHHH----HHHHHhCCchHHHHHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHH
Q 020708 239 LFVAVPFP-GTGAWTGA----FIAAILDMPFWSALSANFFGVVIAGLL-------VNLLVNLGL--KYAIVTGAILFIIS 304 (322)
Q Consensus 239 LFVAIPLP-gTGAwTGA----LIA~lLGm~~kka~laI~lGVlIAgvI-------Vtlls~lGl--~~~~i~giil~~~~ 304 (322)
+.++||.- =+|-..=. -+|+-.|.+.-+.-.++..|...+-.. ++....+|. +..++.|++..+..
T Consensus 110 ~iv~iPvF~dv~fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP~Pgp~a~a~~l~adlG~~il~Glivaip~ 189 (445)
T PRK10472 110 LICALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLPGPAPMLLASQMNADFGWMILIGLCAAIPG 189 (445)
T ss_pred HHHhhHHHHhhHHHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35666753 12222222 456666666666666666664444332 344555664 34455666665553
Q ss_pred -HH-HHHHHHHHhh
Q 020708 305 -TF-MWSTLRSIRK 316 (322)
Q Consensus 305 -~~-~w~~~~~~~~ 316 (322)
+. .|-+-|.++|
T Consensus 190 ~~i~g~~~~~~~~~ 203 (445)
T PRK10472 190 MIIAGPLWGNFISR 203 (445)
T ss_pred HHHHHHHHHHHhcc
Confidence 22 3445577666
No 43
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=49.28 E-value=39 Score=33.83 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 248 TGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLG 289 (322)
Q Consensus 248 TGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lG 289 (322)
++-.+|+.+. .+|++.++++.++++|.++.++.+++....|
T Consensus 31 ~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G 71 (442)
T TIGR00800 31 ATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAG 71 (442)
T ss_pred HHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3445555544 5789999999999999999999999888733
No 44
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=46.24 E-value=2.9e+02 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHhhhcCCCcchHHHHHHHHHHhCCchH
Q 020708 235 LGLMLFVAVPFPGTGAWTGAFIAAILDMPFW 265 (322)
Q Consensus 235 ~GLaLFVAIPLPgTGAwTGALIA~lLGm~~k 265 (322)
+|+..+..-=+|.-|++.+.+-+.+..+-..
T Consensus 238 lgil~g~~~lIP~iG~~i~~ip~~i~al~~~ 268 (355)
T COG0628 238 LGLLAGLLSLIPYIGPVIGLIPAVIIALLQG 268 (355)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhc
Confidence 3444444444566778888777776655444
No 45
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=45.86 E-value=2.9e+02 Score=26.83 Aligned_cols=120 Identities=13% Similarity=0.275 Sum_probs=54.9
Q ss_pred hhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHH-HHhHHHHHHHHhcccchhhHHHHHH
Q 020708 140 RRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFI-ILYLKKFASFLAGKNRSASQFLDML 218 (322)
Q Consensus 140 ~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfI-il~~~kI~~wl~kR~~~~kk~~e~~ 218 (322)
|+.|++-....+..+.+--...-|..-.++..|+...... +|..+..++. .++.++++ +. ...-..|.+
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~----~~~~~~~~~~~~~~~~~~r---~~---~~~T~~e~~ 75 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYA----IGYAIGFLLFALFFAPRLR---RS---GAVTIPEYL 75 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHH----HHHHHHHHHHHHHTHHHHH---HT---T--SHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeec----cccchhHHHHHHHHHHhhc---cc---chhhhhhhh
Confidence 4555555555555555655556666666777788765433 3333333333 34455554 21 122345777
Q ss_pred HHHHhhcccchhhhhHHHHHHhhhcCCCcch-HHHHHHHHHHhCCchHHHHHHH
Q 020708 219 FQKAKEKAGPVEEFQWLGLMLFVAVPFPGTG-AWTGAFIAAILDMPFWSALSAN 271 (322)
Q Consensus 219 ~kRa~kk~~~ieRYG~~GLaLFVAIPLPgTG-AwTGALIA~lLGm~~kka~laI 271 (322)
++|-.++. ..+..+.....++. +|.-..- .-.|.++..++|++...+....
T Consensus 76 ~~Ryg~~~-~~~~~~~i~~i~~~-~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~ 127 (406)
T PF00474_consen 76 EKRYGSKA-LLRILAAIIIIVFM-IPYLAAQLVGGGALLSVLFGIPYNTAILIV 127 (406)
T ss_dssp HHHT-HHH--HHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred hhhcCCch-hhhhhcccccchhh-hhhhhccccccccchhhccchhhhHHHHHH
Confidence 77766554 12333333222222 2221111 1245667778998887555433
No 46
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=45.68 E-value=66 Score=27.85 Aligned_cols=39 Identities=8% Similarity=0.247 Sum_probs=21.5
Q ss_pred hCCchHHHHHHHHHhhhhHHH--HHHHhHHHHHHHHhcccchh
Q 020708 171 MQLKPVLLTVLSVLGNMVPVP--FIILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 171 lGL~P~~a~llavlGNmLpVp--fIil~~~kI~~wl~kR~~~~ 211 (322)
|++||...+ ..+.|++.+. +-.++++++.+.+.+|....
T Consensus 1 M~~~~~~~~--~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I 41 (159)
T PRK13461 1 MEINIPTII--ATIINFIILLLILKHFFFDKIKAVIDSRQSEI 41 (159)
T ss_pred CCCcHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 466764322 2233444433 33567888888888764443
No 47
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=45.44 E-value=52 Score=34.19 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 250 AWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN 287 (322)
Q Consensus 250 AwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~ 287 (322)
.|+|++.... ++.++++.++.+|+++.++.++..++
T Consensus 39 ~~~G~ll~~~--L~~~~si~aillG~llG~i~~A~~s~ 74 (442)
T COG1457 39 MVTGGLLVPG--LSFGQSLLAILLGNLLGGIFMAYFSY 74 (442)
T ss_pred HHHhcccccc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777766 99999999999999999999998888
No 48
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=44.19 E-value=2.1e+02 Score=28.08 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHH
Q 020708 271 NFFGVVIAGLLVNLLVNLGLKYA--IV-TGAILFIISTFMWSTL 311 (322)
Q Consensus 271 I~lGVlIAgvIVtlls~lGl~~~--~i-~giil~~~~~~~w~~~ 311 (322)
+..|+++..+++..+...|.+.+ .. .-|.-|+.++|.|++-
T Consensus 179 ~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 179 ISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777776666445554432 22 2233333388888863
No 49
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=42.90 E-value=1.4e+02 Score=25.33 Aligned_cols=75 Identities=24% Similarity=0.233 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHH----hCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHHHHHHHHHHhhhc
Q 020708 247 GTGAWTGAFIAAI----LDMPFWSALSANFFGVVIAGLLVNLLVNLGL--KYAIVTGAILFII--STFMWSTLRSIRKSL 318 (322)
Q Consensus 247 gTGAwTGALIA~l----LGm~~kka~laI~lGVlIAgvIVtlls~lGl--~~~~i~giil~~~--~~~~w~~~~~~~~~~ 318 (322)
+.|+....++|.+ -|-..++.+.=......++-.+..++-.+|+ +.+.++|....++ -..---..|.+.|..
T Consensus 24 i~g~~lA~~mA~LR~~Y~g~~~~~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGflGvd~ir~~~~~~i~kK~ 103 (107)
T TIGR01594 24 GQGALLALAIAYLRIRYMGGKFKRKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGFVGVDKIREFAKRFINKKA 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheeeccHHHHHHHHHHHHHhhc
Confidence 4444444444444 3444556666555555666777777888887 4555556655555 334444556666665
Q ss_pred CCC
Q 020708 319 GSS 321 (322)
Q Consensus 319 ~~~ 321 (322)
+.+
T Consensus 104 g~~ 106 (107)
T TIGR01594 104 GVD 106 (107)
T ss_pred CCC
Confidence 544
No 50
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=42.85 E-value=4.1e+02 Score=27.65 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=74.9
Q ss_pred hhHHHHHHhCCchHHHH--HHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHh
Q 020708 163 GAIPVGYWMQLKPVLLT--VLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLF 240 (322)
Q Consensus 163 gAIPlGIalGL~P~~a~--llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLF 240 (322)
+++-+|+..|+|+..++ ...=.||.+.-..+++.+.-+.-.+..+..-.+++.+.+.|+--+|+. .|...-....
T Consensus 31 ~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~---~~a~~l~~~i 107 (438)
T PRK14984 31 VALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHI---QWAVVLTGFT 107 (438)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccch---HHHHHHHHHH
Confidence 56777888899886653 334456677666666666555543332344455666666555433332 2222222223
Q ss_pred hhcCCCc-chHH----HHHHHHHHhCCchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--HHHHHHHHHHH-H
Q 020708 241 VAVPFPG-TGAW----TGAFIAAILDMPFWSALSANFFGVVIAGLL-------VNLLVNLGLKYA--IVTGAILFIIS-T 305 (322)
Q Consensus 241 VAIPLPg-TGAw----TGALIA~lLGm~~kka~laI~lGVlIAgvI-------Vtlls~lGl~~~--~i~giil~~~~-~ 305 (322)
++||+-. ++-. ..--+++-.|.++...-.++..|..++-.. ++....+|.|.+ ++.|++..+.. .
T Consensus 108 l~ipvF~dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~vPP~Pgpla~a~~lgadlG~~il~Glivaip~~~ 187 (438)
T PRK14984 108 VGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFNADMGKTLLYGTILAIPTVI 187 (438)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 3345432 2211 123355666677666666665554444433 244444554433 33444444332 1
Q ss_pred H-HHHHHHHHhh
Q 020708 306 F-MWSTLRSIRK 316 (322)
Q Consensus 306 ~-~w~~~~~~~~ 316 (322)
. .|-+-|.++|
T Consensus 188 i~g~~~~~~~~~ 199 (438)
T PRK14984 188 LAGPVYARFLKG 199 (438)
T ss_pred HHHHHHHHHhcc
Confidence 1 2333355555
No 51
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=42.22 E-value=3.9e+02 Score=27.21 Aligned_cols=100 Identities=10% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHhCCchHHHHHHHHHhhhhHHHH-HHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhh-hcC
Q 020708 167 VGYWMQLKPVLLTVLSVLGNMVPVPF-IILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFV-AVP 244 (322)
Q Consensus 167 lGIalGL~P~~a~llavlGNmLpVpf-Iil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFV-AIP 244 (322)
.++..|++.... ..|..+..++ .+++.++++++.++|.+. --..|.+++|-.++.+.++-. .++...+ .++
T Consensus 63 ~~y~~G~~~~~~----~~g~~~~~~~~~~~~~~~~r~~~~~~~~~-~T~~e~l~~Ryg~~~~~~~~~--~ai~~~~~~~~ 135 (487)
T TIGR02121 63 ALYVTGLSELWI----AIGLTIGAYINWKFVAPRLRVYTEAAHNS-ITLPDFFENRFNDKSRLLRII--SALIILVFFTI 135 (487)
T ss_pred HHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhcCC-ccHHHHHHHHhCCCCchhHHH--HHHHHHHHHHH
Confidence 555667765322 2343333333 344556666554312222 234677777776655555433 2322221 111
Q ss_pred ---CCcchHHHHHHHHHHhCCchHHHHHHHHHHH
Q 020708 245 ---FPGTGAWTGAFIAAILDMPFWSALSANFFGV 275 (322)
Q Consensus 245 ---LPgTGAwTGALIA~lLGm~~kka~laI~lGV 275 (322)
....| .|.++..++|++.+.++.....-+
T Consensus 136 ~~~~~l~~--~~~~l~~~~gi~~~~~iii~~~i~ 167 (487)
T TIGR02121 136 YTSSGLVA--GGKLFESTFGLDYKTGLLIGALII 167 (487)
T ss_pred HHHHHHHH--HHHHHHHHhCccHHHHHHHHHHHH
Confidence 11121 345677888999876655443333
No 52
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=40.18 E-value=1.5e+02 Score=23.44 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=24.1
Q ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 259 ILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKYAIVTGAILFII 303 (322)
Q Consensus 259 lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~~~i~giil~~~ 303 (322)
++|++.|+.+..+..+.+..++....-..++.+.+.+..+++.+.
T Consensus 14 ~~GlT~RQl~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~p 58 (93)
T PF12666_consen 14 FFGLTLRQLICLAIGALVGVGVYLLLWFFLGPDIASWIMIPIALP 58 (93)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457777776665555555544444444445555555544444443
No 53
>PRK10527 hypothetical protein; Provisional
Probab=39.92 E-value=54 Score=28.47 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhhHH----HHHHHh-------HHHHHHHHhcccchhhHHH
Q 020708 176 VLLTVLSVLGNMVPV----PFIILY-------LKKFASFLAGKNRSASQFL 215 (322)
Q Consensus 176 ~~a~llavlGNmLpV----pfIil~-------~~kI~~wl~kR~~~~kk~~ 215 (322)
+..+.++++|-.+|+ ||+++. -+++.+|+.+ .+.+++..
T Consensus 11 ~~~~~LG~iGi~LPlLPTTPFlLLAa~cfaRsSpR~~~WL~~-h~~fGp~i 60 (125)
T PRK10527 11 WLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHAWLLY-RSWFGSYL 60 (125)
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHcCCHHHHHHHHc-CchhhHHH
Confidence 345677888988887 555554 2455566654 24444433
No 54
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=38.99 E-value=3e+02 Score=24.93 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhh----hcCC-CcchHH--HH
Q 020708 181 LSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFV----AVPF-PGTGAW--TG 253 (322)
Q Consensus 181 lavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFV----AIPL-PgTGAw--TG 253 (322)
++..++.+.++++.+..+++++- .+ .++..+-+..+-++|+ -+|. +++..+ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~--~~~~~l~~~~~A~~f~~~~~~~~~~~g~s~Hllg~ 70 (205)
T PF01891_consen 11 WLIAAWVVAAGLLALALRRLRWR------------------LL--EKPIPLLAVLAAAVFLAWLWNIPIPGGLSVHLLGL 70 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------hc--ccchHHHHHHHHHHHHHHHHhCCCCCCchHHHhHH
Confidence 45666667777777766443311 00 1113334434443333 3455 334433 24
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 254 AFIAAILDMPFWSALSANFFGVVIAGLLVNLL--VNLGLKYAIVTGAILFIISTFMWSTLRSI 314 (322)
Q Consensus 254 ALIA~lLGm~~kka~laI~lGVlIAgvIVtll--s~lGl~~~~i~giil~~~~~~~w~~~~~~ 314 (322)
++++-++| .|.++.+..+..++-+++.+-. +.+|.+. +..|++...++++.+..+|+.
T Consensus 71 ~l~~l~lG--p~~a~~~~~~vll~qal~fg~gg~~~lG~N~-l~m~~~~~~~~~~~~~~l~~~ 130 (205)
T PF01891_consen 71 TLLTLMLG--PWLAALAMAIVLLLQALLFGDGGWTALGANA-LNMGVPPVLVSYLLFRLLRRK 130 (205)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 55666777 7888888888888777765543 3344443 346677777788888877654
No 55
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=38.94 E-value=4.2e+02 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHhHHHHHHHHhcccch-hhHHHHHHHHH
Q 020708 185 GNMVPVPFIILYLKKFASFLAGKNRS-ASQFLDMLFQK 221 (322)
Q Consensus 185 GNmLpVpfIil~~~kI~~wl~kR~~~-~kk~~e~~~kR 221 (322)
||++++.++..++.--..++.++.+. ..++.|.+.+-
T Consensus 142 g~vLqil~fail~G~al~~~~~~~~~~v~~~~~~~~~~ 179 (415)
T COG1301 142 GNVLQILFFAILFGLALAALGEKGKPPVENLFESLSEA 179 (415)
T ss_pred CChHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHH
Confidence 69999999999988888777654322 44555554443
No 56
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=38.87 E-value=1.6e+02 Score=30.54 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhh
Q 020708 265 WSALSANFFGVVIAGLLVNLLVN---LGLKYA--IVTGAILFIISTFMWSTLRSIRKS 317 (322)
Q Consensus 265 kka~laI~lGVlIAgvIVtlls~---lGl~~~--~i~giil~~~~~~~w~~~~~~~~~ 317 (322)
-.-+=..++|..++-+=..+++. +|+..| +-++.+...++..+.++||+-|++
T Consensus 323 iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~ 380 (430)
T PF06123_consen 323 IHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRG 380 (430)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34444555555444433333333 333333 323333333366666666665554
No 57
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=37.49 E-value=4.5e+02 Score=26.60 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=13.9
Q ss_pred HHHHHHHhCCchHHHHHHHHH
Q 020708 253 GAFIAAILDMPFWSALSANFF 273 (322)
Q Consensus 253 GALIA~lLGm~~kka~laI~l 273 (322)
|.++..++|++.+..+....+
T Consensus 147 g~~l~~~~gi~~~~~iii~~~ 167 (483)
T PRK09442 147 ARLLETATGISYETGLLIFGI 167 (483)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 457778889998765544333
No 58
>PF13303 PTS_EIIC_2: Phosphotransferase system, EIIC
Probab=37.00 E-value=4.5e+02 Score=26.41 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=83.0
Q ss_pred chhhhhhhhhhcchhhHHHHHHhhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHH-------------
Q 020708 118 DANAAVDSIRASAIGLKIATALRRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVL------------- 184 (322)
Q Consensus 118 ~~~a~~~~i~~~~~~~~~~~~~~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavl------------- 184 (322)
-|++.+-+.--+.+=..+.+.+-.......+....-+++|.. .++-+++.++.||..++..+..
T Consensus 7 ~A~gi~v~Lipgail~~i~~~~~~~~~l~~~~~~~q~l~~~a---iG~~Va~~l~~~~l~~~s~~~a~~~gsga~~~~~~ 83 (327)
T PF13303_consen 7 MALGIFVTLIPGAILGQIGKLLGIIQFLIQIGTIAQSLLGPA---IGVLVAYQLKFNPLVSFSVGIAGFVGSGAVKFTAG 83 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHhccchhcccC
Confidence 344444333333332333334333344555666677788887 8888899999999988877776
Q ss_pred -------hhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCC-CcchHHHHHHH
Q 020708 185 -------GNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPF-PGTGAWTGAFI 256 (322)
Q Consensus 185 -------GNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPL-PgTGAwTGALI 256 (322)
|+.+...+.....-.+-+|+.+ ..+++-+..-+.- .-=-|..|+.+.- +. +.|. |.|..+
T Consensus 84 ~~~~~g~Gd~i~~~laa~ia~~~~k~i~~-~~~ldiil~P~v~--------~~~~g~ig~~~~P--~v~~i~~-~IG~~I 151 (327)
T PF13303_consen 84 GWVLSGTGDPINAMLAAAIAVLLGKLIGK-KTSLDIILLPIVT--------ILIGGLIGLLTLP--YVSPITT-WIGNVI 151 (327)
T ss_pred ceeeecccchHHHHHHHHHHHHHHHHHcc-CCCeEEEeHHHHH--------HHHHHHHHHHHHH--HHHHHHH-HHHHHH
Confidence 5666665555554434433331 1111110000000 0000122222111 00 1222 666667
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 257 AAILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKYA 293 (322)
Q Consensus 257 A~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~~ 293 (322)
.....+++ .+.+++++++++-++++=++.-++..+
T Consensus 152 ~~~t~lqP--~lMgiliav~f~ili~sPiSSvAia~a 186 (327)
T PF13303_consen 152 NSFTTLQP--LLMGILIAVVFGILITSPISSVAIAIA 186 (327)
T ss_pred HHHHccCc--HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 76666554 577788888888888776666555443
No 59
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=36.05 E-value=1.1e+02 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=21.5
Q ss_pred hCCchHHHHHHHHHhhhhHH--HHHHHhHHHHHHHHhcccchh
Q 020708 171 MQLKPVLLTVLSVLGNMVPV--PFIILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 171 lGL~P~~a~llavlGNmLpV--pfIil~~~kI~~wl~kR~~~~ 211 (322)
+|+||+. ++.-+.|++.+ .+-.++++++.+.+.+|....
T Consensus 4 ~~~~~~~--~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I 44 (164)
T PRK14473 4 LGINLGL--LIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRI 44 (164)
T ss_pred ccCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777643 22222344333 444566788888887664433
No 60
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.04 E-value=2.8e+02 Score=23.83 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=26.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHH-HHHHH-HHHHHHhhh
Q 020708 261 DMPFWSALSANFFGVVIAGLLVNLL--VNLGLKYAIV-TGAILFII-STFMW-STLRSIRKS 317 (322)
Q Consensus 261 Gm~~kka~laI~lGVlIAgvIVtll--s~lGl~~~~i-~giil~~~-~~~~w-~~~~~~~~~ 317 (322)
|+.-.+.+.+...|...+ +++.+. ...| ..+++ +|+++..+ +.+.. ..+|.+|++
T Consensus 17 GlT~~El~~~~~~~~~~g-l~~g~~l~~~~~-~w~~~p~~~lig~~l~v~~gg~~l~rlKRG 76 (111)
T TIGR03750 17 GLTADELGVAAGVGLAAG-LVLGLLLALLAG-PWALIPTGALLGPILVVLIGGKLLARLKRG 76 (111)
T ss_pred ccCHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHcC
Confidence 555556666666665544 333322 2233 22222 33333333 44444 458888875
No 61
>TIGR00851 mtlA PTS system, mannitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIC domain of the mannitol PTS transporters.
Probab=36.02 E-value=96 Score=30.83 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=22.8
Q ss_pred HHhhhhHHHHHHHhHHHHHHHHhcccc
Q 020708 183 VLGNMVPVPFIILYLKKFASFLAGKNR 209 (322)
Q Consensus 183 vlGNmLpVpfIil~~~kI~~wl~kR~~ 209 (322)
+.|.++|+.+..++..++.+|++|+.|
T Consensus 90 ~~gsViP~il~v~~~s~iEk~l~K~iP 116 (338)
T TIGR00851 90 FLGAMIMGPLGGWLIKKTDEFVQGKVK 116 (338)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhCc
Confidence 358999999999999999988887544
No 62
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=34.42 E-value=3e+02 Score=23.71 Aligned_cols=56 Identities=23% Similarity=0.086 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh
Q 020708 261 DMPFWSALSANFFGVVIAGLLVNLLVN--LGLKYAIVTGAILFII--STFMWSTLRSIRKS 317 (322)
Q Consensus 261 Gm~~kka~laI~lGVlIAgvIVtlls~--lGl~~~~i~giil~~~--~~~~w~~~~~~~~~ 317 (322)
|+.-.+.+.+...|.+++. ++++... .|.-..+.+++++..+ .+++=..++.+|++
T Consensus 20 GlT~~El~~~a~~~~~~g~-~~gl~la~~~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRG 79 (121)
T PF11990_consen 20 GLTADELGLAAGVGFVAGL-VVGLPLALLTGWWAMIPTGALLGPILGVFVGGKLLARLKRG 79 (121)
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcC
Confidence 5555566666655554442 2222222 2222122333333333 55555678888765
No 63
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=34.38 E-value=5.7e+02 Score=26.84 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=21.6
Q ss_pred HHhhhhHHHHHHHhHHHHHHHHhcccc
Q 020708 183 VLGNMVPVPFIILYLKKFASFLAGKNR 209 (322)
Q Consensus 183 vlGNmLpVpfIil~~~kI~~wl~kR~~ 209 (322)
.-|+.+|+.+..++..++.+|++|..|
T Consensus 227 y~~sViPiil~v~~~s~iek~~~K~iP 253 (476)
T PRK09586 227 PRGNIIGVLIAAIAGARIERMVRRFMP 253 (476)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhCH
Confidence 457889999999999888888876443
No 64
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=33.68 E-value=48 Score=35.10 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=44.3
Q ss_pred cccchhhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 225 KAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN 287 (322)
Q Consensus 225 k~~~ieRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~ 287 (322)
++|.|..|.+.-+-.-..+=+ +.|.-+-.+..+|++.++++.++.+|.++-.+.+++-..
T Consensus 37 ~~rtWg~~~~~~~W~~~~~nv---~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~ 96 (497)
T COG1953 37 EQRTWGWWNYFALWLGMVHNV---PTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGH 96 (497)
T ss_pred ccCcchHHHHHHHHHHhhccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444577776554444333223 238888888889999999999999999999998887655
No 65
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.16 E-value=2e+02 Score=25.25 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 020708 269 SANFFGVVIA 278 (322)
Q Consensus 269 laI~lGVlIA 278 (322)
.++++|+++.
T Consensus 10 ~~iilgilli 19 (191)
T PF04156_consen 10 ILIILGILLI 19 (191)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 66
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=32.75 E-value=4.9e+02 Score=25.62 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=37.5
Q ss_pred cchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCCCcchHHHHHHHHHH-------hCCchHHHHHHHHHHHHHH
Q 020708 208 NRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIAAI-------LDMPFWSALSANFFGVVIA 278 (322)
Q Consensus 208 ~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPLPgTGAwTGALIA~l-------LGm~~kka~laI~lGVlIA 278 (322)
..-.+++.+...+..+|.++..-.--...=++|+++ +|.+.-+.+..+.+ .|.++.++...+.++..++
T Consensus 56 ~G~~~~l~~~~~~~~g~~~~~~~~~~~~~~~l~g~l--~Gs~~ataa~~~~~~iP~m~~~g~~~~~a~av~a~~~~~g 131 (405)
T TIGR00786 56 GGLARRLLNFAKALVGHLRGGLGHVNVLACALFAAV--SGSSVATAAALGSLLIPAMTKAGYPKAFAAGVIAASGIIG 131 (405)
T ss_pred CCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccc
Confidence 445556556554444433332222223455566643 56665665555554 4788888777777655443
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.55 E-value=1.9e+02 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=9.1
Q ss_pred HHHHHHHHHH-HHHHHHHH
Q 020708 287 NLGLKYAIVT-GAILFIIS 304 (322)
Q Consensus 287 ~lGl~~~~i~-giil~~~~ 304 (322)
..++.+++++ |++|+..+
T Consensus 38 s~~lg~~~lAlg~vL~~~g 56 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLG 56 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555554 55555553
No 68
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=32.40 E-value=42 Score=38.80 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=37.6
Q ss_pred HHHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 219 FQKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 219 ~kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
.+|.+.--+.+++-|+.+-+|.|. ||. ||=|.-.||++|+.||+..
T Consensus 330 ~~RL~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGPGRGSaAGSLVaY~LgIT~ 386 (1170)
T PRK07374 330 KERLSYELKIIEQMGFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITN 386 (1170)
T ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCCCeeCCCCchHHHHHHHHHhcCCc
Confidence 344444446699999999999985 888 9999999999999998764
No 69
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=32.11 E-value=1.1e+02 Score=25.75 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=31.2
Q ss_pred HHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhH
Q 020708 149 VVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVP 189 (322)
Q Consensus 149 ~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLp 189 (322)
..|+++.+|.+-+-.+.-+|..++-+-..+++.+++|-.+.
T Consensus 70 aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~ 110 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALG 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999888888888888777666666666654444
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=32.01 E-value=6e+02 Score=26.41 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=13.5
Q ss_pred HHHHHHHhCCchHHHHHHHH
Q 020708 253 GAFIAAILDMPFWSALSANF 272 (322)
Q Consensus 253 GALIA~lLGm~~kka~laI~ 272 (322)
|-++..++|++.+..+....
T Consensus 134 ~~~l~~~~gi~~~~~iii~~ 153 (552)
T TIGR03648 134 GVVFSRFLEVDFETGVFIGM 153 (552)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 55667888998876654333
No 71
>PRK11715 inner membrane protein; Provisional
Probab=31.74 E-value=2.3e+02 Score=29.47 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHhhh
Q 020708 266 SALSANFFGVVIAGLLVNLLVN---LGLKYAIVTGAILFI--ISTFMWSTLRSIRKS 317 (322)
Q Consensus 266 ka~laI~lGVlIAgvIVtlls~---lGl~~~~i~giil~~--~~~~~w~~~~~~~~~ 317 (322)
.-+=..++|..++-+=..+++. +|+..|=+++...|. +++...+++|+-|++
T Consensus 330 HpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g 386 (436)
T PRK11715 330 HPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRG 386 (436)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4444555555544443333333 333333333333332 255555666655554
No 72
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=31.65 E-value=7.6e+02 Score=27.46 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=6.7
Q ss_pred chhhhhHHHHHH
Q 020708 228 PVEEFQWLGLML 239 (322)
Q Consensus 228 ~ieRYG~~GLaL 239 (322)
.++|.|..|=++
T Consensus 383 ~m~~~GL~Gksf 394 (772)
T PRK09554 383 LMQALGLPGKSF 394 (772)
T ss_pred HHHHcCCCCcee
Confidence 355666666543
No 73
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=31.31 E-value=1.3e+02 Score=31.68 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHh
Q 020708 247 GTGAWTGAFIAAILDMP------FWSALSANFFGVVIAGLLVNLLVNLGLK----YAIVTGAILFII-STFMWSTLRSIR 315 (322)
Q Consensus 247 gTGAwTGALIA~lLGm~------~kka~laI~lGVlIAgvIVtlls~lGl~----~~~i~giil~~~-~~~~w~~~~~~~ 315 (322)
.|.+=.++.+-..+--+ .-....=++||++++.+-+.++..-|++ .++++|+=..++ ...+|++.|.+|
T Consensus 420 vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~alPf~~i~~l~~~sl~k~l~ 499 (504)
T PRK03356 420 VTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAK 499 (504)
T ss_pred HhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666555544331 1122334455555555555544444555 566777777777 788899999998
Q ss_pred hh
Q 020708 316 KS 317 (322)
Q Consensus 316 ~~ 317 (322)
+.
T Consensus 500 ~~ 501 (504)
T PRK03356 500 QN 501 (504)
T ss_pred hh
Confidence 84
No 74
>PRK09950 putative transporter; Provisional
Probab=30.46 E-value=1.4e+02 Score=31.64 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHH-HHHHHHHHH
Q 020708 245 FPGTGAWTGAFIAAILDMP------FWSALSANFFGVVIAGLLVNLLVNLG-L----KYAIVTGAILFII-STFMWSTLR 312 (322)
Q Consensus 245 LPgTGAwTGALIA~lLGm~------~kka~laI~lGVlIAgvIVtlls~lG-l----~~~~i~giil~~~-~~~~w~~~~ 312 (322)
+-.|.+=.++.+-..+--+ .-....=++||++++.+-+.++..-| + ..++++|+=..++ ...+|++.|
T Consensus 415 f~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~alP~~~i~~l~~~s~~k 494 (506)
T PRK09950 415 FLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTALPFLVILLIKVYGFIR 494 (506)
T ss_pred HHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777665332 12223334455555554444444344 3 3567777777777 788899999
Q ss_pred HHhhh
Q 020708 313 SIRKS 317 (322)
Q Consensus 313 ~~~~~ 317 (322)
.+|+.
T Consensus 495 ~l~~d 499 (506)
T PRK09950 495 WLKQD 499 (506)
T ss_pred HHhhc
Confidence 99864
No 75
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.34 E-value=5e+02 Score=27.83 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=64.2
Q ss_pred hhHHHHHHhhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHh--------------------------
Q 020708 132 GLKIATALRRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLG-------------------------- 185 (322)
Q Consensus 132 ~~~~~~~~~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlG-------------------------- 185 (322)
.-.+|++=-+.|-.+|+.+++.+..=+...-+ -+++.......+|
T Consensus 132 Ap~la~~AL~FGpaEYFal~vfgl~~~~~~~~---------~s~lK~l~~~~lGl~La~VGiD~~sG~~RfTf~~~~L~d 202 (504)
T COG3333 132 APPLAKLALKFGPAEYFALMVFGLVSVAGLSG---------GSLLKGLASAALGLLLATVGIDPISGVPRFTFGIPELLD 202 (504)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHHHHcCcCccCCCcceecCCHHHhc
Confidence 34577777889999999999888765543332 2333333333333
Q ss_pred --hhhHHHHHHHhHHHHHHHHhcccchhhHHHHHH-----HH-HHhhcccchhhhhHHHHHHhhhcCCCcchHHHHHHHH
Q 020708 186 --NMVPVPFIILYLKKFASFLAGKNRSASQFLDML-----FQ-KAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFIA 257 (322)
Q Consensus 186 --NmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~-----~k-Ra~kk~~~ieRYG~~GLaLFVAIPLPgTGAwTGALIA 257 (322)
+.+.+.+=++.+..+..-.++|.+.-+...|.. .+ .-+|..+.|-|-..+|..+-+ +|++|+-.+|.++
T Consensus 203 Gi~fv~~~iglFai~Eil~~~e~~~~~~~~~v~~~~~~~~s~~~~~~~~~~~lRgt~iG~~~Gv---lPg~GatiAsFls 279 (504)
T COG3333 203 GISFVVAAIGLFAISEILLNLEKRLEHGGEKVEKVGRVWLSKKEFKRAWPTWLRGTLIGFLLGV---LPGGGATIASFLS 279 (504)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcccccCHHHHHHhhHHHHHHhhhhhheec---ccCccHHHHHHHH
Confidence 223333334444444443433212111111211 11 111222447777788887766 7999999999988
Q ss_pred HHh
Q 020708 258 AIL 260 (322)
Q Consensus 258 ~lL 260 (322)
+-.
T Consensus 280 Y~~ 282 (504)
T COG3333 280 YST 282 (504)
T ss_pred HHH
Confidence 754
No 76
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=30.32 E-value=55 Score=37.23 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=38.4
Q ss_pred HHHHHhhcccchhhhhHHHHHHhh----------hcCC-CcchHHHHHHHHHHhCCch
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFV----------AVPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFV----------AIPL-PgTGAwTGALIA~lLGm~~ 264 (322)
..+|-++--+.+++-|+.+-+|.| .||. ||=|.-.||++|+.||+.-
T Consensus 254 y~~RL~~EL~vI~~~gf~~YFLIV~D~i~~Ar~~gI~vGpGRGSAAGSLVaY~LgIT~ 311 (971)
T PRK05898 254 YVKRLKYELDIINEKQFDDYFLIVYDFINFAKSNGIIIGPGRGSAAGSLIAYLLHITD 311 (971)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHCCceeCCCCccHHHHHHHHHhcCCc
Confidence 344544444669999999999988 6998 9999999999999999764
No 77
>PRK11281 hypothetical protein; Provisional
Probab=30.26 E-value=1.2e+02 Score=35.04 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHhhh
Q 020708 229 VEEFQWLGLMLFVA 242 (322)
Q Consensus 229 ieRYG~~GLaLFVA 242 (322)
+=+|..+.+.++++
T Consensus 881 li~y~I~~i~ilia 894 (1113)
T PRK11281 881 LLTYIIIAVGAVTA 894 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666555555443
No 78
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=30.07 E-value=1.3e+02 Score=26.64 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=17.3
Q ss_pred HhhhhHH--HHHHHhHHHHHHHHhcccchh
Q 020708 184 LGNMVPV--PFIILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 184 lGNmLpV--pfIil~~~kI~~wl~kR~~~~ 211 (322)
+.|++.+ .+..++++++.+.+.+|....
T Consensus 29 ~inflil~~lL~~fl~kPi~~~l~~R~~~I 58 (167)
T PRK08475 29 TINFLIFVGILWYFAAKPLKNFYKSRINKI 58 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 444566788888888764443
No 79
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.88 E-value=2.1e+02 Score=26.80 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=45.4
Q ss_pred HHHhcchhhhhhhHHH--HHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcc
Q 020708 152 ALATLPVLELRGAIPV--GYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGK 207 (322)
Q Consensus 152 LLSmlP~iElRgAIPl--GIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR 207 (322)
+.+++|++..-.+|-+ ++.++-|-..+++...+-|=+..|+|..+.-++-.|+..+
T Consensus 55 faaf~Pf~g~h~iiAa~La~~l~gNl~aAa~~t~l~NPlT~P~I~~~tyelG~~ll~~ 112 (184)
T COG3216 55 FAAFFPFFGLHMIIAAVLAIVLRGNLVAAALGTWLANPLTMPFIWGATYELGAWLLQR 112 (184)
T ss_pred HHHhcccchHHHHHHHHHHHHHhccHHHHHHHhHhcCCcccceeeeeeHhhhhHHhcC
Confidence 5689998877666655 4577889899999999999999999999877777787753
No 80
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.73 E-value=1.2e+02 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=22.1
Q ss_pred HhCCchHHHHHHHHHhhhhH--HHHHHHhHHHHHHHHhcccchhh
Q 020708 170 WMQLKPVLLTVLSVLGNMVP--VPFIILYLKKFASFLAGKNRSAS 212 (322)
Q Consensus 170 alGL~P~~a~llavlGNmLp--VpfIil~~~kI~~wl~kR~~~~k 212 (322)
.++.+|...++ .+.|++. ..+-.++++++.+.+.+|.....
T Consensus 13 ~~~~~~~~~~~--~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~ 55 (175)
T PRK14472 13 LLSPNPGLIFW--TAVTFVIVLLILKKIAWGPILSALEEREKGIQ 55 (175)
T ss_pred ccCCCHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35566543222 2333333 33445678888888887644433
No 81
>PRK09395 actP acetate permease; Provisional
Probab=29.57 E-value=6.6e+02 Score=26.14 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHH
Q 020708 252 TGAFIAAILDMPFWSALSANFF 273 (322)
Q Consensus 252 TGALIA~lLGm~~kka~laI~l 273 (322)
.|.++..++|++.+..+.....
T Consensus 170 ~g~il~~~~gi~~~~~ili~~~ 191 (551)
T PRK09395 170 AGKLIQLLFGLNYHVAVVLVGV 191 (551)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3566778889998766554443
No 82
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=29.48 E-value=6e+02 Score=25.60 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHHHHHHHH
Q 020708 229 VEEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFW--------SALSANFFGVVIAGLLVNLLV 286 (322)
Q Consensus 229 ieRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~k--------ka~laI~lGVlIAgvIVtlls 286 (322)
.+-.++.+..+-+ ..|++||=++|...|.++| -.++.+..|+....+++....
T Consensus 131 ~~~~~iL~~i~gi-----~~~aYTGflLaa~~giPFwNnp~LPvLfL~sg~sag~a~~~L~~lv~~ 191 (305)
T COG3301 131 HRALEILMAILGV-----LLGAYTGFLLAALKGIPFWNNPALPVLFLFSGLSAGSAALILLMLVRT 191 (305)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcccCchhHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 5566677776666 6789999999999999998 233444455555555555443
No 83
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=29.34 E-value=74 Score=31.54 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 249 GAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNL 288 (322)
Q Consensus 249 GAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~l 288 (322)
+-.+|+.... ++.|+++.++.+|.++.++.+++....
T Consensus 16 ~~~~G~~l~~---L~~~~ai~aiilG~~i~~~~~~l~~~~ 52 (386)
T TIGR02358 16 EIQTGALLAP---LGLTRGLLAILLGHLVGVLLLSAAGVI 52 (386)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666654 788999999999999999999988773
No 84
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=28.61 E-value=1.7e+02 Score=26.70 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=4.4
Q ss_pred hcC-CCcchH
Q 020708 242 AVP-FPGTGA 250 (322)
Q Consensus 242 AIP-LPgTGA 250 (322)
++| +|++..
T Consensus 139 ~LpliPf~n~ 148 (187)
T PF06055_consen 139 ALPLIPFSNT 148 (187)
T ss_pred HhCCCCcCcc
Confidence 345 555553
No 85
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=28.43 E-value=4.9e+02 Score=24.25 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhh----hcCC-CcchHH--HHH
Q 020708 182 SVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFV----AVPF-PGTGAW--TGA 254 (322)
Q Consensus 182 avlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFV----AIPL-PgTGAw--TGA 254 (322)
+..+..+.++++.+..+++++ ..+++.+..-+.+.....+|+ -+|+ ++|..+ .++
T Consensus 13 ~~~~~~i~~~~~~~~~~~~~~------------------~l~~~~~~~pl~~~~~a~~F~l~~i~~pi~gG~s~Hllg~~ 74 (214)
T TIGR00123 13 AAAWWVLSLPVLVYGLVRLKR------------------IVEEKPEMKPLLAVSGAFIFVLSALKLPSVTGSCSHPTGNG 74 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HhccChhHHHHHHHHHHHHHHHHHhCCCCCCcchhhHhHHH
Confidence 455556677777666654321 011122345677777777774 4563 455544 356
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 255 FIAAILDMPFWSALSANFFGVVIAGLLVN--LLVNLGLKYAIVTGAILFIISTFMWSTLRS 313 (322)
Q Consensus 255 LIA~lLGm~~kka~laI~lGVlIAgvIVt--lls~lGl~~~~i~giil~~~~~~~w~~~~~ 313 (322)
+++-++| .+-+..+.++..++-++... ..+.+|.+.- ..|++-.++++..|..+|+
T Consensus 75 l~~lllG--p~~a~l~~~i~L~~qal~fg~GGit~LG~N~l-~m~~~~~~~~~~~~~~~~~ 132 (214)
T TIGR00123 75 LAVVLFG--PAVTAVLAAIVLLFQALLLAHGGLTTLGANGF-SMGVIGPFVGWIVYKLACR 132 (214)
T ss_pred HHHHHHh--HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 6677777 44555555555444444422 2333555543 4555555567777777765
No 86
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=28.39 E-value=1.4e+02 Score=21.66 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020708 285 LVNLGLKYAIVTGAILFIISTFMWSTLRSIRKS 317 (322)
Q Consensus 285 ls~lGl~~~~i~giil~~~~~~~w~~~~~~~~~ 317 (322)
.+..|+--.+++..++...++++|-+.|+.++.
T Consensus 8 ~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~ 40 (42)
T PF11346_consen 8 GSDVGLMSLIVIVFTIGMGVFFIRYFIRKMKED 40 (42)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344566666677777777799999999998764
No 87
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=28.36 E-value=66 Score=37.19 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=38.2
Q ss_pred HHHHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
..+|-+.--+.+++-|+.|-+|.|. ||. ||=|...||++|+.||+..
T Consensus 318 ~~~RL~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGpGRGSaAGSLVaY~LgIT~ 375 (1151)
T PRK06826 318 LIERLEYELSVIKQMGYVDYFLIVWDFIRFARENGIMVGPGRGSAAGSLVAYTLGITK 375 (1151)
T ss_pred HHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCCCeeCCCcccHHHHHHHHHhCCCc
Confidence 3344444446699999999999985 888 9999999999999999764
No 88
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=27.73 E-value=6.2e+02 Score=25.23 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=36.8
Q ss_pred HHHHHHHhcchhhhhhh----HHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhH
Q 020708 148 AVVFALATLPVLELRGA----IPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYL 197 (322)
Q Consensus 148 L~VFLLSmlP~iElRgA----IPlGIalGL~P~~a~llavlGNmLpVpfIil~~ 197 (322)
+.+.+....+++|.... .|.....+-+-...++-.+.|.|+.+--+.+..
T Consensus 15 ~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi 68 (371)
T PF10011_consen 15 LAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSI 68 (371)
T ss_pred HHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777666 666667777778888889999999887766664
No 89
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=27.18 E-value=66 Score=37.10 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=37.4
Q ss_pred HHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 220 QKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 220 kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
+|.+.--+.+++.|+.+-+|.|. ||. ||=|...||++|+.||+..
T Consensus 320 ~Rl~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGpGRGSaAGSLVaY~LgIT~ 375 (1135)
T PRK05673 320 ERLEYELDVIIQMGFPGYFLIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALGITD 375 (1135)
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHCCCeeCCCCchHHHHHHHHHhcCCc
Confidence 44444446699999999999985 888 9999999999999999864
No 90
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=27.16 E-value=2.5e+02 Score=24.19 Aligned_cols=29 Identities=7% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 020708 288 LGLKYAIVTGAILFII-STFMWSTLRSIRK 316 (322)
Q Consensus 288 lGl~~~~i~giil~~~-~~~~w~~~~~~~~ 316 (322)
..+-.+++.|++..++ .++.+..++.+.+
T Consensus 111 ~Rvllgl~~al~vlvAEv~l~~~y~~k~e~ 140 (142)
T PF11712_consen 111 YRVLLGLFGALLVLVAEVVLYIRYLRKVEE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566777888888888 8888888877654
No 91
>PRK01637 hypothetical protein; Reviewed
Probab=26.98 E-value=2.9e+02 Score=26.27 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-HHHHHHHH
Q 020708 253 GAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN-----------LGLKYAIVTGAILFII-STFMWSTL 311 (322)
Q Consensus 253 GALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~-----------lGl~~~~i~giil~~~-~~~~w~~~ 311 (322)
+-..-+.+.-++|..+-.+..|.+++++...++.. ....+|.+.+++++.+ -++.|.++
T Consensus 186 ~f~~lY~~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~~~y~~~YGslg~vi~lllWlyl~~~il 256 (286)
T PRK01637 186 SFWLLYSVVPNKKVPFRHALVGALVAALLFELGKKGFALYITTFPSYQLIYGALAVIPILFVWVYLSWCIV 256 (286)
T ss_pred HHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566666677777766665554 2334677777777777 66666654
No 92
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=26.55 E-value=2.4e+02 Score=21.79 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 229 VEEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKY 292 (322)
Q Consensus 229 ieRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~ 292 (322)
+.--++-+.+++..+|+ ++..+|.+.+++. ...+|..+-.++-+.+-+.++|.
T Consensus 8 ~hai~FE~~~l~~~~P~----------~a~~~~~~~~~a~-~l~v~~s~~a~~wn~ifN~~FD~ 60 (67)
T PF05232_consen 8 LHAILFEVGALLISVPL----------IAWWLGISLWQAG-ALDVGLSLFAMVWNYIFNWLFDK 60 (67)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555577 8999999988776 34445555555555555566654
No 93
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.47 E-value=78 Score=36.06 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=37.8
Q ss_pred HHHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 219 FQKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 219 ~kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
.+|-++--+.+++-|+.+-+|.|. ||. ||=|.-.||++|+.||+.-
T Consensus 323 ~~RL~~EL~vI~~~gf~~YFLIV~D~v~~Ar~~gI~vGpGRGSaAgSlVaY~LgIT~ 379 (1022)
T TIGR00594 323 KERLEYELDVINSMGFPGYFLIVWDFIKWAKDHGIPVGPGRGSAAGSLVAYALKITD 379 (1022)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHCCCeeCCCCChHHHHHHHHHhcCCc
Confidence 344444446699999999999985 888 9999999999999999864
No 94
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=26.47 E-value=59 Score=27.43 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 268 LSANFFGVVIAGLLVNLLVN-LGLKYAIVTGAILFIISTFMWSTLRS 313 (322)
Q Consensus 268 ~laI~lGVlIAgvIVtlls~-lGl~~~~i~giil~~~~~~~w~~~~~ 313 (322)
-+.++.|.+++.+++....+ .|++.-+..++.+...+...|.+.|.
T Consensus 18 Yl~~faGgll~~~il~~iLYi~Gv~~~ici~~~~~~~~~lv~~~f~l 64 (96)
T PF13571_consen 18 YLFYFAGGLLGLFILFVILYIAGVNQWICIGFGVVSGSLLVWQTFRL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhhhheeeeec
Confidence 45667778888877776666 49999999999998888888877664
No 95
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=26.33 E-value=69 Score=35.89 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=37.9
Q ss_pred HHHHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
..+|-++--+.+++-|+.+-+|.|. ||. ||=|...||++|+.||+.-
T Consensus 327 y~~RLe~EL~vI~~~gf~~YFLIV~D~v~~Ar~~gi~VGpGRGSAAGSLVaY~LgIT~ 384 (874)
T PRK09532 327 YKERLEYELKMLQQMGFSTYFLVVWDYIKYARDNNIPVGPGRGSAAGSLVAYCLKITN 384 (874)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHhCCceecCCcccHHHHHHHHHhcCCc
Confidence 3344444446699999999999985 888 9999999999999999764
No 96
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.26 E-value=1.8e+02 Score=27.59 Aligned_cols=38 Identities=5% Similarity=0.078 Sum_probs=20.8
Q ss_pred CCchHHHHHHHHHhhhhHH--HHHHHhHHHHHHHHhcccchh
Q 020708 172 QLKPVLLTVLSVLGNMVPV--PFIILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 172 GL~P~~a~llavlGNmLpV--pfIil~~~kI~~wl~kR~~~~ 211 (322)
-+||+.. +.-+.|++.+ .+-.++++++.+.+.+|....
T Consensus 2 ~id~~t~--~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I 41 (250)
T PRK14474 2 LIDWFTV--VAQIINFLILVYLLRRFLYKPIIQVMKKRQQRI 41 (250)
T ss_pred cCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555432 2233344433 444567888888888764443
No 97
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=26.09 E-value=70 Score=36.41 Aligned_cols=46 Identities=13% Similarity=0.418 Sum_probs=37.6
Q ss_pred HHHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 219 FQKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 219 ~kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
.+|.++--+.+++-|+.+-+|.|. ||. ||=|...||++|+.||+.-
T Consensus 253 ~~RL~~EL~vI~~~gf~~YFLIV~D~v~~Ak~~gI~vGpGRGSaAGSLVaY~LgIT~ 309 (973)
T PRK07135 253 KERINYEYSVIKKLKFSNYFLIIWDFIKWARKNKISIGPGRGSASGSLVSYLLNITS 309 (973)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHCCceeCCCCcchHHHHHHHHhcCCc
Confidence 344444446699999999999885 888 9999999999999999864
No 98
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=26.01 E-value=4.7e+02 Score=23.21 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhh
Q 020708 251 WTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKYAIVT------GAILFIISTFMWSTLRSIRK 316 (322)
Q Consensus 251 wTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~~~i~------giil~~~~~~~w~~~~~~~~ 316 (322)
-.-.++..-+.-.+|+++.. ..|+.++..+...++.+|+...+-. .+=..+++|.+|--.|.+|.
T Consensus 23 ~~~~v~~~~~~~G~r~~~~~-~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 23 GAINTMSTSISHGYRGAVAS-IAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred hHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555556665554 4599999888888888888765533 33334446666666666654
No 99
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=25.61 E-value=4.3e+02 Score=26.38 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=48.5
Q ss_pred hhhhcchhhHHH-HHHhhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCC---chHHHHHHHHHhhhhHHHHHHHhHHHH
Q 020708 125 SIRASAIGLKIA-TALRRSSWPDEAVVFALATLPVLELRGAIPVGYWMQL---KPVLLTVLSVLGNMVPVPFIILYLKKF 200 (322)
Q Consensus 125 ~i~~~~~~~~~~-~~~~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL---~P~~a~llavlGNmLpVpfIil~~~kI 200 (322)
+.-+|++|=++- ++||+.+-...+.+|+.+++=-+ .+-.++--+- .|..++.++++--++.+..++++.+++
T Consensus 74 ~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l----~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i 149 (371)
T PF10011_consen 74 QLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSL----LVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHI 149 (371)
T ss_pred HHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777998887 45555555555555555543221 1111221122 466678888888888899999999999
Q ss_pred HHHHh
Q 020708 201 ASFLA 205 (322)
Q Consensus 201 ~~wl~ 205 (322)
.++++
T Consensus 150 ~~~iq 154 (371)
T PF10011_consen 150 ARSIQ 154 (371)
T ss_pred HHhcC
Confidence 87775
No 100
>PRK09928 choline transport protein BetT; Provisional
Probab=25.59 E-value=1.5e+02 Score=32.58 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHhCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHH
Q 020708 245 FPGTGAWTGAFIAAILDMPF------WSALSANFFGVVIAGLLVNLLVNLGLK----YAIVTGAILFII-STFMWSTLRS 313 (322)
Q Consensus 245 LPgTGAwTGALIA~lLGm~~------kka~laI~lGVlIAgvIVtlls~lGl~----~~~i~giil~~~-~~~~w~~~~~ 313 (322)
+-.|.+=.|+.+-..+.-+. -....=++||++++.+.+.++...|++ ..+++|+=..++ -..||+++|.
T Consensus 422 FfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 422 FYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888777665532 123344455555555555555445555 455666666666 7788999998
Q ss_pred Hhhh
Q 020708 314 IRKS 317 (322)
Q Consensus 314 ~~~~ 317 (322)
+|+.
T Consensus 502 l~~e 505 (679)
T PRK09928 502 LKVE 505 (679)
T ss_pred HHhh
Confidence 8764
No 101
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=25.28 E-value=2e+02 Score=25.50 Aligned_cols=40 Identities=10% Similarity=-0.000 Sum_probs=28.3
Q ss_pred HHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhh
Q 020708 149 VVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMV 188 (322)
Q Consensus 149 ~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmL 188 (322)
..|+++++|.+-+-.+.-+|..++.+-..+++.+++|-.+
T Consensus 77 aa~lvYllPLl~li~ga~l~~~~~~~e~~~~~~~~~g~~~ 116 (154)
T PRK10862 77 SALLVYMTPLVGLFLGAALFQLLFGSDLAALCGALLGGVG 116 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5789999999988877777776665555556666665533
No 102
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=25.24 E-value=5.6e+02 Score=23.84 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHhhhcCCCcchHHHHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH
Q 020708 229 VEEFQWLGLMLFVAVPFPGTGAWTGAFIAAI-----LDMPFWSALSANFFGVVIAGLLVN 283 (322)
Q Consensus 229 ieRYG~~GLaLFVAIPLPgTGAwTGALIA~l-----LGm~~kka~laI~lGVlIAgvIVt 283 (322)
+||..+.-+.+-. |+-..|-.+|++=|.. .+-|.|+....+.|-+..+.+..-
T Consensus 147 ld~l~~~~~~~Gf--~~ltl~li~G~iWa~~~wg~~w~wDpK~~~sli~Wl~Y~~~l~~r 204 (243)
T TIGR03144 147 LDNLSYRTIAIGF--PLLTIGIISGAVWANEAWGSYWSWDPKETWALITWLIYAAYLHAR 204 (243)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555543332222 3334566777766643 356889998888887766655444
No 103
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=25.10 E-value=1.9e+02 Score=25.71 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=16.3
Q ss_pred HhhhhHHHHHHHhH--H-HHHHHHhcccchh
Q 020708 184 LGNMVPVPFIILYL--K-KFASFLAGKNRSA 211 (322)
Q Consensus 184 lGNmLpVpfIil~~--~-kI~~wl~kR~~~~ 211 (322)
+.|++.+.+++.++ . .+.+.+.+|....
T Consensus 33 ~inflil~~iL~~f~~~~~v~~~L~~R~~~I 63 (184)
T PRK13455 33 TLAFLLFIGILVYFKVPGMIGGMLDKRAEGI 63 (184)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666666655544 3 3677887664443
No 104
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=24.93 E-value=81 Score=36.37 Aligned_cols=47 Identities=15% Similarity=0.358 Sum_probs=38.0
Q ss_pred HHHHHhhcccchhhhhHHHHHHhhh----------cCC-CcchHHHHHHHHHHhCCch
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFVA----------VPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFVA----------IPL-PgTGAwTGALIA~lLGm~~ 264 (322)
..+|.+.--+.+++-|+.+-+|.|. ||. ||=|...||++|+.||+.-
T Consensus 303 y~~RL~~EL~vI~~mGf~~YFLIV~D~i~~Ak~~gI~VGPGRGSaAGSLVaY~LgIT~ 360 (1107)
T PRK06920 303 HINRLNHELNVISRMGFSDYFLIVWDFMKYAHENHILTGPGRGSAAGSLVSYVLEITD 360 (1107)
T ss_pred HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCCEeCCCcchHHHHHHHHHhCCCc
Confidence 3344444446699999999999884 888 9999999999999999864
No 105
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=24.87 E-value=2.1e+02 Score=29.78 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=43.8
Q ss_pred CCcchHHHHHHHHHHh---CCch---HHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHH-HHHHHHHHH
Q 020708 245 FPGTGAWTGAFIAAIL---DMPF---WSALSANFFGVVIAGLLVNLLVNLG-L----KYAIVTGAILFII-STFMWSTLR 312 (322)
Q Consensus 245 LPgTGAwTGALIA~lL---Gm~~---kka~laI~lGVlIAgvIVtlls~lG-l----~~~~i~giil~~~-~~~~w~~~~ 312 (322)
+-.|.+=.++.+-..+ +.+. -....=++||++++.+-+.++..-| + ...+++|+=..++ ...+|++.|
T Consensus 369 f~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~alP~~~i~~l~~~sl~k 448 (453)
T TIGR00842 369 FFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAALPFSLVMLVVMASLIK 448 (453)
T ss_pred HHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777787776655 2222 2233344555555555554444445 3 3566777777777 788899999
Q ss_pred HHhh
Q 020708 313 SIRK 316 (322)
Q Consensus 313 ~~~~ 316 (322)
.+|+
T Consensus 449 ~l~~ 452 (453)
T TIGR00842 449 DLKQ 452 (453)
T ss_pred HHhc
Confidence 9876
No 106
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=24.74 E-value=94 Score=28.09 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 234 WLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKYAIV 295 (322)
Q Consensus 234 ~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~~~i 295 (322)
.-.+++|+.||+ ..|.-+-.+--.+.--.... .=.|-+++.+.....+..+|+.||++
T Consensus 62 ~rRm~~~~GiP~-~lG~~~f~~~y~l~~~~~~d---vP~~~~~~~S~~~Fg~gllGisYGil 119 (153)
T PF11947_consen 62 LRRMAVFVGIPT-ALGVAVFVVFYYLKSRQIVD---VPPWAVLLVSLVFFGLGLLGISYGIL 119 (153)
T ss_pred HHHHHHHhchHH-HHHHHHHHHHHHHHhccccc---cCchHHHHHHHHHHHHHHHhhhhhhc
Confidence 447889999997 66643333333322222121 11222334444444556677777765
No 107
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=24.58 E-value=6e+02 Score=26.03 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020708 277 IAGLLVNLLVNLGLKYA 293 (322)
Q Consensus 277 IAgvIVtlls~lGl~~~ 293 (322)
++-++..+++++|+.++
T Consensus 114 i~vi~t~il~y~G~~~~ 130 (356)
T COG4956 114 IPVILTIILAYFGFQLA 130 (356)
T ss_pred HHHHHHHHHHHHhhHHh
Confidence 33333344455555544
No 108
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=24.16 E-value=7.3e+02 Score=24.84 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=44.2
Q ss_pred HhhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHH
Q 020708 139 LRRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLK 198 (322)
Q Consensus 139 ~~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~ 198 (322)
=|+.++.++..+++-..+=+...-.+- .+...||+.+++++..++||++...+..+...
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga-~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~ 69 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGA-LGLPLGLSWWQSVIAIILGNLLGGIFVALNSR 69 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355689999999987776555544442 23357899999999999999988777766654
No 109
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.91 E-value=3.5e+02 Score=25.68 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhhcCCCcchHHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHHHHH-------------------HHHHH
Q 020708 230 EEFQWLGLMLFVAVPFPGTGAWTGAFIAAILDMPFWSA-LSANFFGVVIAGLLVNL-------------------LVNLG 289 (322)
Q Consensus 230 eRYG~~GLaLFVAIPLPgTGAwTGALIA~lLGm~~kka-~laI~lGVlIAgvIVtl-------------------ls~lG 289 (322)
.||--.|.+++. |+...|...++.+++-+... +.++..|++.+.+|+.+ ....-
T Consensus 13 ~k~~~~G~~vl~------ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R 86 (301)
T PF14362_consen 13 NKYAGIGAAVLF------TALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPR 86 (301)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 020708 290 LKYAIVTGAILF 301 (322)
Q Consensus 290 l~~~~i~giil~ 301 (322)
+-+++++|++..
T Consensus 87 ~~lAvliaivIs 98 (301)
T PF14362_consen 87 LLLAVLIAIVIS 98 (301)
T ss_pred HHHHHHHHHHHH
No 110
>PRK10958 leucine export protein LeuE; Provisional
Probab=23.40 E-value=5.6e+02 Score=23.18 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhh
Q 020708 249 GAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLGLKYAIV------TGAILFIISTFMWSTLRSIRKS 317 (322)
Q Consensus 249 GAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lGl~~~~i------~giil~~~~~~~w~~~~~~~~~ 317 (322)
|+-.--+++.-+.-.+|+++.. .+|+.++.++...++.+|+...+- ..+=+.+.+|.+|--.|-+|.+
T Consensus 25 GP~~~~v~~~~~~~G~r~~~~~-~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~ 98 (212)
T PRK10958 25 GPNSLYVLSTAARRGVKAGYRA-ACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAA 98 (212)
T ss_pred chHHHHHHHHHHhhCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566667777778888888877 459999988888888888765542 2333444466666655555543
No 111
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=23.18 E-value=8.3e+02 Score=25.08 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=21.0
Q ss_pred HhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHH
Q 020708 184 LGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQ 220 (322)
Q Consensus 184 lGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~k 220 (322)
=||++++.++..++.-......++.+...++.|...+
T Consensus 147 ~gnvL~vIvFai~~GiAl~~~~e~~~~l~~~~~~~~~ 183 (428)
T PRK01663 147 SGDILQVLLFAVLFGFALARLGEKGKPVFDFIESLSH 183 (428)
T ss_pred cCChHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 4899999888877765554443222333444444333
No 112
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=22.83 E-value=85 Score=35.92 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHhhcccchhhhhHHHHHHhhh----------cCCCcchHHHHHHHHHHhCCch
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFVA----------VPFPGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFVA----------IPLPgTGAwTGALIA~lLGm~~ 264 (322)
..+|.++--+.+++-|+.+-+|.|. ||.||=|...||++|+.||+..
T Consensus 312 ~~~RL~~EL~vI~~~gf~~YFLIV~D~i~~Ak~~gi~vpGRGSaAGSLVaY~LgIT~ 368 (1046)
T PRK05672 312 ARAQIEHELALIAELGYEGYFLTVHDIVRFARSQGILCQGRGSAANSAVCYALGITE 368 (1046)
T ss_pred HHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCCceeCCCChHHHHHHHHHhCCCc
Confidence 3444444446699999999999884 8889999999999999998764
No 113
>COG4146 Predicted symporter [General function prediction only]
Probab=22.64 E-value=4.7e+02 Score=27.85 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=41.5
Q ss_pred HHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHhhhcCCCcchHHHHHHH-------HHHhCCchHHHHHHHH
Q 020708 200 FASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAFI-------AAILDMPFWSALSANF 272 (322)
Q Consensus 200 I~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLFVAIPLPgTGAwTGALI-------A~lLGm~~kka~laI~ 272 (322)
+-+++++-+.... |.+++|-.|+-|.+-..-+.=-..++-+|. --++|+++ ...++++.-+++..+.
T Consensus 94 lprylK~GitTIP---dFlE~RfD~~TR~Iis~lFLi~y~~~flPt---vLYsGAla~nsiF~l~~v~~IS~g~~i~~~v 167 (571)
T COG4146 94 LPRYLKRGITTIP---DFLEERFDKTTRMIISFLFLIAYGVCFLPT---VLYSGALALNSIFHLGEVLQISHGAAIWLLV 167 (571)
T ss_pred HHHHHhcCCccch---HHHHHhhhhHHHHHHHHHHHHHHHHHhhhH---HHhhhhHHHhhhhchHhhhCcCcchHHHHHH
Confidence 4466665333333 455566555555544443333333343453 22777763 5677777777776666
Q ss_pred HHHHHHHHHHH
Q 020708 273 FGVVIAGLLVN 283 (322)
Q Consensus 273 lGVlIAgvIVt 283 (322)
+..-++|.+-+
T Consensus 168 iaiG~~g~~Ya 178 (571)
T COG4146 168 IAIGLAGILYA 178 (571)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 114
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=22.56 E-value=1e+03 Score=25.96 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=20.0
Q ss_pred HHHhhhhHHHHHHHhHHHHHHHHhcc
Q 020708 182 SVLGNMVPVPFIILYLKKFASFLAGK 207 (322)
Q Consensus 182 avlGNmLpVpfIil~~~kI~~wl~kR 207 (322)
+.-|..+|+.+..++..++.+|++|.
T Consensus 214 ~Y~~sViPiil~v~~~s~iEk~l~K~ 239 (627)
T PRK09824 214 NYSSSVIPIIFSAWLCSILERRLNAW 239 (627)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 34556788889999988888887764
No 115
>PRK10034 fructuronate transporter; Provisional
Probab=22.55 E-value=8.9e+02 Score=25.24 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=74.4
Q ss_pred hhHHHHHHhCCchHH--HHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHHHHHhhcccchhhhhHHHHHHh
Q 020708 163 GAIPVGYWMQLKPVL--LTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLFQKAKEKAGPVEEFQWLGLMLF 240 (322)
Q Consensus 163 gAIPlGIalGL~P~~--a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~kRa~kk~~~ieRYG~~GLaLF 240 (322)
+++-+|+..|+|+.. .....-.||.+.-..+++++.-+...+.++....+++.+.+.++-.+|+..+- ....|+.
T Consensus 34 ~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~kr~~~a-~~l~g~l-- 110 (447)
T PRK10034 34 AALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQLS-VIIIGLI-- 110 (447)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCccchHHH-HHHHHHH--
Confidence 667778888998865 33444445555555555554444433333345566777776666444332211 0133332
Q ss_pred hhcCCC-cch----HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHH-H
Q 020708 241 VAVPFP-GTG----AWTGAFIAAILDMPFWSALSANFFGVVIAGLL-------VNLLVNLGLK--YAIVTGAILFIIS-T 305 (322)
Q Consensus 241 VAIPLP-gTG----AwTGALIA~lLGm~~kka~laI~lGVlIAgvI-------Vtlls~lGl~--~~~i~giil~~~~-~ 305 (322)
+++|.- =++ +-..--+++-.+++.-+...++..|...+-.. ++....+|.| ..++.|++..+-+ +
T Consensus 111 lGi~vF~dv~~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP~Pgpla~a~~l~a~lG~~il~Gl~v~ip~~~ 190 (447)
T PRK10034 111 FGLAMFYEVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQPGPVALVNAYGADMGMVYIYGVLVTIPSVI 190 (447)
T ss_pred HhhHHHHHhHHHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHhCCcHHHHHHHhhHHHHHHHH
Confidence 122331 011 11222345556777777777777777666543 3444555643 3344444333332 2
Q ss_pred H-HHHHHHHHhh
Q 020708 306 F-MWSTLRSIRK 316 (322)
Q Consensus 306 ~-~w~~~~~~~~ 316 (322)
. .|-+-|.++|
T Consensus 191 ~~g~~~~~~~~~ 202 (447)
T PRK10034 191 CAGLILPKFLGN 202 (447)
T ss_pred HHHHHHHHHhcc
Confidence 2 2333355555
No 116
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=21.81 E-value=2.6e+02 Score=25.57 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 020708 244 PFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN------------------------LGLKYAIVTGAI 299 (322)
Q Consensus 244 PLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~------------------------lGl~~~~i~gii 299 (322)
|+|.-| +...+|+++.+.=...+.|.++++....++.. ..++..++.+..
T Consensus 35 PfPvhg------ld~alg~~~s~l~~~~l~~Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~S~Pafipi~FEltVL~aa~ 108 (173)
T PF11821_consen 35 PFPVHG------LDEALGLKRSRLPWIALVGGLTGFATAFLLQWYTNAVDYPLNIGGKPLFSWPAFIPITFELTVLFAAL 108 (173)
T ss_pred CCcCcC------HHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCCCCcccchHHHHHHHHHHHH
Confidence 777777 88999998866655555555555544444433 456666666655
Q ss_pred HHHHHHHH
Q 020708 300 LFIISTFM 307 (322)
Q Consensus 300 l~~~~~~~ 307 (322)
..+++++.
T Consensus 109 ~~~~g~l~ 116 (173)
T PF11821_consen 109 GTVLGMLI 116 (173)
T ss_pred HHHHHHHH
Confidence 55555543
No 117
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=21.68 E-value=5.6e+02 Score=24.48 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 020708 288 LGLKYAIVT---GAILFIISTFMWSTLRSIRK 316 (322)
Q Consensus 288 lGl~~~~i~---giil~~~~~~~w~~~~~~~~ 316 (322)
.|+..|+++ |+++++-+.+.|.++++--+
T Consensus 172 ~GI~eALitTa~GL~vAIPAliayn~f~~ri~ 203 (244)
T PRK10414 172 PGIAEALLATAIGLVAAIPAVVIYNVFARQIG 203 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655554 44555558888888776443
No 118
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.66 E-value=2.3e+02 Score=24.17 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=17.7
Q ss_pred HHhhhhHHHHH--HHhHHHHHHHHhcccchhh
Q 020708 183 VLGNMVPVPFI--ILYLKKFASFLAGKNRSAS 212 (322)
Q Consensus 183 vlGNmLpVpfI--il~~~kI~~wl~kR~~~~k 212 (322)
.+.|++...++ .++++++.+++.+|.....
T Consensus 10 ~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~ 41 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPPIMKALEERQKKIA 41 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444443333 4668889999887644443
No 119
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=21.63 E-value=4.8e+02 Score=27.33 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=43.8
Q ss_pred HHHHHHhhhcCC-CcchHHHHHHHHHH----hC-----------CchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 020708 234 WLGLMLFVAVPF-PGTGAWTGAFIAAI----LD-----------MPFWSALSANFFGVVIAGLLVNL---LVNLGLKYAI 294 (322)
Q Consensus 234 ~~GLaLFVAIPL-PgTGAwTGALIA~l----LG-----------m~~kka~laI~lGVlIAgvIVtl---ls~lGl~~~~ 294 (322)
...|+.|. |+ .++|.=+|+=.+.+ |. +-+|+.-.+...|.+.+.++..- ..+.|...+.
T Consensus 311 ~vaLa~fi--Plv~g~gGN~GsQ~~tvivRaLa~~~i~~~~~~~vl~rE~~vG~~~G~vl~~~~~~~~~~~~~~~~~l~~ 388 (451)
T COG2239 311 LVALAAFI--PLVAGMGGNAGTQAATVIVRALALGEISLKNVFRVLLKELGVGLLLGLVLAIIIGLRVPAWLYGGLLLGL 388 (451)
T ss_pred HHHHHHHh--heeecCCCcHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 56788885 74 37777777655543 22 23467778888888888666553 2223467777
Q ss_pred HHHHHHHHH
Q 020708 295 VTGAILFII 303 (322)
Q Consensus 295 i~giil~~~ 303 (322)
++|..+++.
T Consensus 389 ~v~~al~~~ 397 (451)
T COG2239 389 IVALALLLN 397 (451)
T ss_pred HHHHHHHHH
Confidence 777777765
No 120
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=21.60 E-value=3e+02 Score=28.91 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHhCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 020708 247 GTGAWTGAFIAAILDMPF---WSALSANFFGVVIAGLLVNLLVNLGLK----YAIVTGAILFII-STFMWSTLRSIRKS 317 (322)
Q Consensus 247 gTGAwTGALIA~lLGm~~---kka~laI~lGVlIAgvIVtlls~lGl~----~~~i~giil~~~-~~~~w~~~~~~~~~ 317 (322)
.|-+=.++.+-..+-.+. -....-++||++++.+-+.++...|++ ..+++|+-..++ ...+|+++|.+||.
T Consensus 407 vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~d 485 (485)
T PF02028_consen 407 VTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKED 485 (485)
T ss_dssp HHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566666666666665552 133444555555555555555555544 456666666666 78889999999973
No 121
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.59 E-value=1.2e+02 Score=23.82 Aligned_cols=27 Identities=15% Similarity=0.484 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020708 293 AIVTGAILFIISTFMWSTLRSIRKSLG 319 (322)
Q Consensus 293 ~~i~giil~~~~~~~w~~~~~~~~~~~ 319 (322)
++++++++.++..|+--.|++++|-++
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l~~~l~ 29 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKLKKTLD 29 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667788888888887654
No 122
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=21.36 E-value=2.8e+02 Score=24.43 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHhcccchh
Q 020708 192 FIILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 192 fIil~~~kI~~wl~kR~~~~ 211 (322)
+-.++++++.+.+.+|....
T Consensus 33 L~~~~~kpi~~~l~~R~~~I 52 (173)
T PRK13460 33 LKKFAWDVILKALDERASGV 52 (173)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34567788888888764443
No 123
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.22 E-value=2.6e+02 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=23.0
Q ss_pred HhCCchHHHHHHHHHhhhhHHHHH--HHhHHHHHHHHhcccch
Q 020708 170 WMQLKPVLLTVLSVLGNMVPVPFI--ILYLKKFASFLAGKNRS 210 (322)
Q Consensus 170 alGL~P~~a~llavlGNmLpVpfI--il~~~kI~~wl~kR~~~ 210 (322)
++++||+. ++..+.|++.+.++ -++++++.+.+..|...
T Consensus 2 mi~l~~~~--~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~ 42 (141)
T PRK08476 2 MLDVNPYL--MLATFVVFLLLIVILNSWLYKPLLKFMDNRNAS 42 (141)
T ss_pred cCcccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677653 33344455544444 46788888888765433
No 124
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=21.18 E-value=79 Score=36.27 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=38.4
Q ss_pred HHHHHhhcccchhhhhHHHHHHhh----------hcCC-CcchHHHHHHHHHHhCCch
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFV----------AVPF-PGTGAWTGAFIAAILDMPF 264 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFV----------AIPL-PgTGAwTGALIA~lLGm~~ 264 (322)
..+|-+.--+.+++-|+.+-+|.| .||. ||=|.-.||++|+.||+..
T Consensus 260 y~~RL~~EL~vI~~mgf~~YFLIV~D~i~~Ak~~gI~vGPGRGSaAGSLVaY~LgIT~ 317 (1034)
T PRK07279 260 YQERLDKELSVIHDMGFDDYFLIVWDLLRFGRSQGYYMGMGRGSAAGSLVAYALDITG 317 (1034)
T ss_pred HHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHhCCceeCCCCchHHHHHHHHHhcCCc
Confidence 334444444669999999999988 5898 9999999999999999864
No 125
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.07 E-value=3.2e+02 Score=25.05 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=50.1
Q ss_pred HHhhhcCCCcchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 020708 238 MLFVAVPFPGTGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN-LGLKYAIVTGAILFII-STFMWSTLRSIR 315 (322)
Q Consensus 238 aLFVAIPLPgTGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~-lGl~~~~i~giil~~~-~~~~w~~~~~~~ 315 (322)
.+|.+ +|++|....+.+..-.|-+-+.+ .+..|.++..++...... --+=.++++|++++.. ..+-|.-+|++.
T Consensus 196 ~~~gg--~p~~~s~srs~~~~~~Ga~t~~s--~~~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~ 271 (280)
T PF00916_consen 196 GLFGG--MPGSGSFSRSAVNYRAGARTRLS--GLISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLW 271 (280)
T ss_pred hhhcc--cccccccccchHHHhcCcceeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh
Confidence 35664 46899999999999888776533 223333332222222222 3456788899888888 888899999888
Q ss_pred hh
Q 020708 316 KS 317 (322)
Q Consensus 316 ~~ 317 (322)
|-
T Consensus 272 ~~ 273 (280)
T PF00916_consen 272 RV 273 (280)
T ss_pred cC
Confidence 73
No 126
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.99 E-value=4.5e+02 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 268 LSANFFGVVIAGLLVNLLVNLGLKYAIVTGAILFIIS 304 (322)
Q Consensus 268 ~laI~lGVlIAgvIVtlls~lGl~~~~i~giil~~~~ 304 (322)
+...++|+.++.+... .+.+|.+...+.+++.++++
T Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~ 43 (199)
T PF10112_consen 8 IFRWILGVLIAAITFL-VSFFGFDHSFLLSLLIGAVA 43 (199)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 3344555544443333 44445555555554444443
No 127
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.87 E-value=2.3e+02 Score=24.66 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=17.7
Q ss_pred HHHhhhhHHHHH--HHhHHHHHHHHhcccchh
Q 020708 182 SVLGNMVPVPFI--ILYLKKFASFLAGKNRSA 211 (322)
Q Consensus 182 avlGNmLpVpfI--il~~~kI~~wl~kR~~~~ 211 (322)
..+.|++...++ .++++++.+.+.+|....
T Consensus 13 ~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I 44 (164)
T PRK14471 13 WQTILFLILLLLLAKFAWKPILGAVKEREDSI 44 (164)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444333 477888888888764433
No 128
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=20.29 E-value=1.7e+02 Score=28.90 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=39.4
Q ss_pred HHhhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhH
Q 020708 138 ALRRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYL 197 (322)
Q Consensus 138 ~~~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~ 197 (322)
.=|+.+..++..+++-+.+=+...-.+.-. ..+|++.+.+.+..++||++-..+..+..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~ 63 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMG 63 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346668888888888776666655443322 66799999999999999998876665543
No 129
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=20.28 E-value=1.1e+03 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHhcc
Q 020708 185 GNMVPVPFIILYLKKFASFLAGK 207 (322)
Q Consensus 185 GNmLpVpfIil~~~kI~~wl~kR 207 (322)
+.++|+.+..++..++.+|++|+
T Consensus 209 ~gvip~Il~~~l~~~iek~~~k~ 231 (610)
T TIGR01995 209 SSVIPVILAVWLMSYVEKFLKKV 231 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 45577777777777777776653
No 130
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.11 E-value=2.6e+02 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=19.3
Q ss_pred HHHHHhhhhHHH--HHHHhHHHHHHHHhcccchhhH
Q 020708 180 VLSVLGNMVPVP--FIILYLKKFASFLAGKNRSASQ 213 (322)
Q Consensus 180 llavlGNmLpVp--fIil~~~kI~~wl~kR~~~~kk 213 (322)
++.-+.|++.+. +..++++++.+.+..|.....+
T Consensus 51 ~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~ 86 (205)
T PRK06231 51 FIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEA 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554443 3345678888888876444433
No 131
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=20.10 E-value=5.1e+02 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH
Q 020708 289 GLKYAIVTGAILFII-STFMWSTLRS 313 (322)
Q Consensus 289 Gl~~~~i~giil~~~-~~~~w~~~~~ 313 (322)
...+++.+-++++++ ++++|.-++.
T Consensus 103 ~~~~~~~~~~~~~iid~~~l~r~vkk 128 (170)
T PF11241_consen 103 YVTLAMYVLLLLVIIDGVILGRRVKK 128 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777 8888876654
Done!