Query 020708
Match_columns 322
No_of_seqs 136 out of 312
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 40.2 2.7E+02 0.0092 27.0 15.2 55 140-197 25-80 (501)
2 2xq2_A Sodium/glucose cotransp 35.1 1.7E+02 0.0059 29.0 9.6 37 140-176 49-85 (593)
3 2jln_A MHP1; hydantoin, transp 34.9 44 0.0015 32.6 5.2 40 248-289 44-83 (501)
4 2knc_B Integrin beta-3; transm 33.3 61 0.0021 24.9 4.7 25 290-314 13-38 (79)
5 3dh4_A Sodium/glucose cotransp 30.0 4E+02 0.014 26.0 12.0 118 140-270 20-139 (530)
6 2hnh_A DNA polymerase III alph 21.5 41 0.0014 36.1 2.5 46 218-263 321-377 (910)
7 3j1z_P YIIP, cation efflux fam 20.4 1.3E+02 0.0045 27.4 5.3 27 294-320 120-146 (306)
8 2k1k_A Ephrin type-A receptor 18.1 1.7E+02 0.0058 19.6 4.1 17 292-308 18-35 (38)
9 2nq2_A Hypothetical ABC transp 15.3 6.1E+02 0.021 23.6 8.7 55 249-303 102-160 (337)
10 2l8s_A Integrin alpha-1; trans 15.0 1.4E+02 0.0049 21.7 3.3 26 175-200 8-33 (54)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=40.16 E-value=2.7e+02 Score=27.05 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=40.7
Q ss_pred hhCCchHHHHHHHHHhcchhhhhh-hHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhH
Q 020708 140 RRSSWPDEAVVFALATLPVLELRG-AIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYL 197 (322)
Q Consensus 140 ~~~gl~~~L~VFLLSmlP~iElRg-AIPlGIalGL~P~~a~llavlGNmLpVpfIil~~ 197 (322)
|+.++.++..+++-..+=+.+.-. +..+ . |++.+.+++..++||++...+..+..
T Consensus 25 R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~--~-GLs~~~a~lai~lG~li~~~~~~l~~ 80 (501)
T 2jln_A 25 RSVGPFSLAAIWFAMAIQVAIFIAAGQMT--S-SFQVWQVIVAIAAGCTIAVILLFFTQ 80 (501)
T ss_dssp CCBCHHHHHHHHHHHHCSTHHHHHHHHHT--T-TSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh--c-CcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556888888888888776666532 2222 3 99999999999999998876665543
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=35.06 E-value=1.7e+02 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=21.0
Q ss_pred hhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchH
Q 020708 140 RRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPV 176 (322)
Q Consensus 140 ~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~ 176 (322)
|+.+++.....+..+.+=-...-|..=.++..|+...
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~ 85 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIA 85 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGG
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHH
Confidence 6666666555555555555555555556677788653
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=34.87 E-value=44 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020708 248 TGAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVNLG 289 (322)
Q Consensus 248 TGAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~lG 289 (322)
+.-.+|+.... |++.++++.++++|.++.++.+.+....|
T Consensus 44 ~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G 83 (501)
T 2jln_A 44 AIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAA 83 (501)
T ss_dssp HHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33347776665 99999999999999999999888776644
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.26 E-value=61 Score=24.85 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020708 290 LKYAIVTGAILFII-STFMWSTLRSI 314 (322)
Q Consensus 290 l~~~~i~giil~~~-~~~~w~~~~~~ 314 (322)
+-.++++|++|.++ ..+.|.++..+
T Consensus 13 Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556555555 66777777666
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=29.98 E-value=4e+02 Score=25.98 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=52.4
Q ss_pred hhCCchHHHHHHHHHhcchhhhhhhHHHHHHhCCchHHHHHHHHHhhhhHHHHHHHhHHHHHHHHhcccchhhHHHHHHH
Q 020708 140 RRSSWPDEAVVFALATLPVLELRGAIPVGYWMQLKPVLLTVLSVLGNMVPVPFIILYLKKFASFLAGKNRSASQFLDMLF 219 (322)
Q Consensus 140 ~~~gl~~~L~VFLLSmlP~iElRgAIPlGIalGL~P~~a~llavlGNmLpVpfIil~~~kI~~wl~kR~~~~kk~~e~~~ 219 (322)
|+.|++.....+..+.+=-...-|..-.++..|+....-...+.++-.+ +..++..+.+ +.+ .--..|.++
T Consensus 20 R~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i---~~~~~~p~~~---~~~---~~T~~e~l~ 90 (530)
T 3dh4_A 20 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLII---VGKYFLPIFI---EKG---IYTIPEFVE 90 (530)
T ss_dssp SCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHH---HHHHTHHHHH---HTT---CCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHH---HcC---CccHHHHHH
Confidence 4555555555555555544444455455667788753322222222111 1112222222 211 223456666
Q ss_pred HHHhhcccchhhhh-HHHHHHhhhcCCCcchHH-HHHHHHHHhCCchHHHHHH
Q 020708 220 QKAKEKAGPVEEFQ-WLGLMLFVAVPFPGTGAW-TGAFIAAILDMPFWSALSA 270 (322)
Q Consensus 220 kRa~kk~~~ieRYG-~~GLaLFVAIPLPgTGAw-TGALIA~lLGm~~kka~la 270 (322)
+|-.++. +... ...+.++..+.+. ..-+ .|.++..++|++.+..+..
T Consensus 91 ~Rfg~~~---~~~~a~~~l~~~~~~~~~-~~l~~~~~~~~~~~Gi~~~~~i~i 139 (530)
T 3dh4_A 91 KRFNKKL---KTILAVFWISLYIFVNLT-SVLYLGGLALETILGIPLMYSILG 139 (530)
T ss_dssp HHTCHHH---HHHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHcCcHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6655443 3322 2222222211221 1112 2456788999997654433
No 6
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=21.53 E-value=41 Score=36.12 Aligned_cols=46 Identities=24% Similarity=0.511 Sum_probs=37.9
Q ss_pred HHHHHhhcccchhhhhHHHHHHhh----------hcCC-CcchHHHHHHHHHHhCCc
Q 020708 218 LFQKAKEKAGPVEEFQWLGLMLFV----------AVPF-PGTGAWTGAFIAAILDMP 263 (322)
Q Consensus 218 ~~kRa~kk~~~ieRYG~~GLaLFV----------AIPL-PgTGAwTGALIA~lLGm~ 263 (322)
..+|-++--+.+++-|+.|-+|.| .||. ||=|...||++|+.||+.
T Consensus 321 ~~~Rl~~EL~vI~~~gf~~YFLiV~d~v~~a~~~gi~vGpGRGSaagSlVay~LgIT 377 (910)
T 2hnh_A 321 YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKIT 377 (910)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCBCSCCTTGGGCHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCCcceeeHHHHHHHHHHHCCceeCCCcccHHHHHHHHHhCCC
Confidence 344444444669999999999988 4898 999999999999999985
No 7
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=20.43 E-value=1.3e+02 Score=27.38 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020708 294 IVTGAILFIISTFMWSTLRSIRKSLGS 320 (322)
Q Consensus 294 ~i~giil~~~~~~~w~~~~~~~~~~~~ 320 (322)
++++++..++...++.+.|...|..+|
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~~~~~~~s 146 (306)
T 3j1z_P 120 VVVSVVAIVLTLALVLLQKRALAATNS 146 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhhhhHhhhhHHHHHHHHHhccccCC
Confidence 333444444455566666766665554
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=18.14 E-value=1.7e+02 Score=19.56 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH-HHHHH
Q 020708 292 YAIVTGAILFII-STFMW 308 (322)
Q Consensus 292 ~~~i~giil~~~-~~~~w 308 (322)
++.++|+++... .+|+|
T Consensus 18 vG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHe
Confidence 334444443333 34444
No 9
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=15.33 E-value=6.1e+02 Score=23.59 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHH
Q 020708 249 GAWTGAFIAAILDMPFWSALSANFFGVVIAGLLVNLLVN--LGLK--YAIVTGAILFII 303 (322)
Q Consensus 249 GAwTGALIA~lLGm~~kka~laI~lGVlIAgvIVtlls~--lGl~--~~~i~giil~~~ 303 (322)
|+-.|..++.++|.+........+.|.+++..++..+.. -+.+ .-+++|+++...
T Consensus 102 gA~~g~~l~~~~g~~~~~~~~~A~~gal~a~~lv~~l~~~~~~~~~~~liL~Gia~s~~ 160 (337)
T 2nq2_A 102 GSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGL 160 (337)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 445555555556554322333445555566666655552 1222 225666666544
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=14.97 E-value=1.4e+02 Score=21.72 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhhhhHHHHHHHhHHHH
Q 020708 175 PVLLTVLSVLGNMVPVPFIILYLKKF 200 (322)
Q Consensus 175 P~~a~llavlGNmLpVpfIil~~~kI 200 (322)
|+..++.|++|-++...++++.+-+.
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677777777666666655443
Done!