Query 020708
Match_columns 322
No_of_seqs 136 out of 312
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020708.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020708hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uuia1 f.56.1.1 (A:2-147) Leu 24.2 1.5E+02 0.011 22.8 11.0 39 279-317 106-145 (146)
2 d1b4fa_ a.60.1.2 (A:) EphB2 re 16.6 32 0.0023 23.4 2.0 21 134-154 8-28 (74)
3 d2np5a2 a.121.1.1 (A:78-195) T 16.5 18 0.0013 26.5 0.7 23 85-107 13-35 (118)
4 d1dxsa_ a.60.1.2 (A:) C-termin 16.3 26 0.0019 23.2 1.4 19 135-153 2-20 (57)
5 d1ow5a_ a.60.1.2 (A:) Serine/t 14.8 34 0.0025 22.4 1.7 19 135-153 3-21 (60)
6 d2f3na1 a.60.1.2 (A:2-65) Sh3 14.2 38 0.0028 22.0 1.8 20 134-153 8-27 (64)
7 d1b0xa_ a.60.1.2 (A:) EphA4 re 13.6 40 0.0029 22.8 1.8 20 134-153 6-25 (72)
8 d2vv5a3 f.34.1.1 (A:27-112) Me 12.8 2E+02 0.014 19.4 6.6 13 229-241 46-58 (86)
9 d1ucva_ a.60.1.2 (A:) Ephrin t 11.8 51 0.0037 22.7 2.0 21 134-154 9-29 (81)
10 d1v38a_ a.60.1.2 (A:) Sam-doma 10.9 58 0.0043 22.2 2.0 21 134-154 14-34 (78)
No 1
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.19 E-value=1.5e+02 Score=22.83 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 020708 279 GLLVNLLVNLGLKYAIVTGAILFII-STFMWSTLRSIRKS 317 (322)
Q Consensus 279 gvIVtlls~lGl~~~~i~giil~~~-~~~~w~~~~~~~~~ 317 (322)
+...+.++..++-.+.+.|++..++ .++-|+++..+||-
T Consensus 106 g~~~~~~~~~~ll~~a~~gi~~~~l~~~~~~~~~~~~~~~ 145 (146)
T d2uuia1 106 PLYASARALWLLVALAALGLLAHFLPAALRAALLGRLRTL 145 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666777788888888 99999999988863
No 2
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.63 E-value=32 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=17.8
Q ss_pred HHHHHHhhCCchHHHHHHHHH
Q 020708 134 KIATALRRSSWPDEAVVFALA 154 (322)
Q Consensus 134 ~~~~~~~~~gl~~~L~VFLLS 154 (322)
.|++||++.|+.+|.-.|.-.
T Consensus 8 ~V~~WL~~lgL~~Y~~~F~~~ 28 (74)
T d1b4fa_ 8 TVDEWLEAIKMGQYKESFANA 28 (74)
T ss_dssp SHHHHHHHTTCGGGHHHHHHT
T ss_pred cHHHHHHHCCCHHHHHHHHHc
Confidence 389999999999999887654
No 3
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=16.50 E-value=18 Score=26.46 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.2
Q ss_pred hhhccCCCCCchhHHHHHHHHhh
Q 020708 85 ERILPVTEETPLKFLLWVVFWAS 107 (322)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (322)
++.+|..+|+-.....|+.||+.
T Consensus 13 ~~~lP~d~err~~~~vW~af~~~ 35 (118)
T d2np5a2 13 SQLLPLDEARSREAHVMAAFAVR 35 (118)
T ss_dssp HTTSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHH
Confidence 45889999999999999999975
No 4
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.26 E-value=26 Score=23.22 Aligned_cols=19 Identities=16% Similarity=0.189 Sum_probs=16.5
Q ss_pred HHHHHhhCCchHHHHHHHH
Q 020708 135 IATALRRSSWPDEAVVFAL 153 (322)
Q Consensus 135 ~~~~~~~~gl~~~L~VFLL 153 (322)
|.+||++.|+.+|.-.|.-
T Consensus 2 v~~wL~~lgL~~Y~~~F~~ 20 (57)
T d1dxsa_ 2 LVSFLTGLGCPNCIEYFTS 20 (57)
T ss_dssp HHHHHHHTTCTTSHHHHHT
T ss_pred HHHHHHHCCcHHHHHHHHH
Confidence 6899999999999988764
No 5
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.77 E-value=34 Score=22.41 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=16.4
Q ss_pred HHHHHhhCCchHHHHHHHH
Q 020708 135 IATALRRSSWPDEAVVFAL 153 (322)
Q Consensus 135 ~~~~~~~~gl~~~L~VFLL 153 (322)
|++||++.|+.+|.-.|.-
T Consensus 3 V~~wL~~lgL~~Y~~~F~~ 21 (60)
T d1ow5a_ 3 VQLFLEEIGCTQYLDSFIQ 21 (60)
T ss_dssp HHHHHHHHSCTHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHH
Confidence 7889999999999888764
No 6
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=14.19 E-value=38 Score=22.04 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.0
Q ss_pred HHHHHHhhCCchHHHHHHHH
Q 020708 134 KIATALRRSSWPDEAVVFAL 153 (322)
Q Consensus 134 ~~~~~~~~~gl~~~L~VFLL 153 (322)
.|++||++.|+.+|.-.|.-
T Consensus 8 ~V~~wL~~~gl~~y~~~F~~ 27 (64)
T d2f3na1 8 DVGDWLESIHLGEHRDRFED 27 (64)
T ss_dssp HHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 58899999999999888754
No 7
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.60 E-value=40 Score=22.77 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=17.3
Q ss_pred HHHHHHhhCCchHHHHHHHH
Q 020708 134 KIATALRRSSWPDEAVVFAL 153 (322)
Q Consensus 134 ~~~~~~~~~gl~~~L~VFLL 153 (322)
.|++||++.|+.+|.-.|.-
T Consensus 6 sV~~WL~~lgL~~Y~~~F~~ 25 (72)
T d1b0xa_ 6 SVGDWLQAIKMDRYKDNFTA 25 (72)
T ss_dssp CHHHHHHHTTCGGGHHHHHH
T ss_pred hHHHHHHHCCcHHHHHHHHH
Confidence 48899999999999888765
No 8
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=12.83 E-value=2e+02 Score=19.38 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=6.4
Q ss_pred hhhhhHHHHHHhh
Q 020708 229 VEEFQWLGLMLFV 241 (322)
Q Consensus 229 ieRYG~~GLaLFV 241 (322)
+=||..+.+.++.
T Consensus 46 ~~~~~i~~i~~~~ 58 (86)
T d2vv5a3 46 LVRYGIIAFTLIA 58 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444444
No 9
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.76 E-value=51 Score=22.71 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=18.3
Q ss_pred HHHHHHhhCCchHHHHHHHHH
Q 020708 134 KIATALRRSSWPDEAVVFALA 154 (322)
Q Consensus 134 ~~~~~~~~~gl~~~L~VFLLS 154 (322)
.|.+||++.|+.+|.-.|.-.
T Consensus 9 sV~~WL~~lgL~qY~~~F~~~ 29 (81)
T d1ucva_ 9 TVGDWLDSIRMGRYRDHFAAG 29 (81)
T ss_dssp BHHHHHHHTTCGGGHHHHHHT
T ss_pred cHHHHHHHCccHHHHHHHHHc
Confidence 588999999999999888764
No 10
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.91 E-value=58 Score=22.18 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHhhCCchHHHHHHHHH
Q 020708 134 KIATALRRSSWPDEAVVFALA 154 (322)
Q Consensus 134 ~~~~~~~~~gl~~~L~VFLLS 154 (322)
.|.+||+..|+.+|.-.|.-.
T Consensus 14 ~V~~WL~~lgL~~Y~~~F~~~ 34 (78)
T d1v38a_ 14 TIQEFLERIHLQEYTSTLLLN 34 (78)
T ss_dssp BHHHHHHTTTCGGGHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHc
Confidence 488999999999999888654
Done!