BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020710
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASD 177
E+ +Q+LN + G + D GCGTG L +A+ GA V +D
Sbjct: 47 EDLLQLLNPQ---PGEFILDLGCGTGQLTEKIAQSGAEVLGTD 86
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASD 177
+E + L EG ++G V D G G G+L +PLA+ GA +V D
Sbjct: 220 LEALQERLGPEG-VRGRQVLDLGAGYGALTLPLARMGAEVVGVED 263
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASD 177
+E + L EG ++G V D G G G+L +PLA+ GA +V D
Sbjct: 220 LEALQERLGPEG-VRGRQVLDLGAGYGALTLPLARMGAEVVGVED 263
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDI-SXXXXXXXXXXXXXXXXXDNGGEAPVMPKFEV 210
+ D GCG+G +++ LA +G V+ DI S GG+A +F+V
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA----EFKV 89
Query: 211 KDLESL---DGKYDTVVCLDVLIHYPQSKADGMI 241
++ SL D +D V L P K I
Sbjct: 90 ENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRI 123
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 107 QRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPL 166
QRW+ + +D+ G ++ + D + +G + DAGCG G + L
Sbjct: 21 QRWRNLAAAGNDI--------YGEARLI--------DAXAPRGAKILDAGCGQGRIGGYL 64
Query: 167 AKQGAIVSASDI 178
+KQG V +D+
Sbjct: 65 SKQGHDVLGTDL 76
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASD 177
KG + D G GTG ++ LA QG V A +
Sbjct: 34 KGSVIADIGAGTGGYSVALANQGLFVYAVE 63
>pdb|3MP2|A Chain A, Crystal Structure Of Transmissible Gastroenteritis Virus
Papain-Like Protease 1
Length = 211
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 99 EYFNNSGFQRWKKIYGETDD-VNRVQLDIRL--GHSKTVENTMQ-MLNDEGSLKGIAVCD 154
++FNN ++++KK G+ D VN L GHS E ++ MLND + K +
Sbjct: 36 DFFNNEAWEKFKK--GDVMDFVNLCYAATTLARGHSGDAEYLLELMLNDYSTAKIVLAAK 93
Query: 155 AGCGTGSLAIPLA 167
GCG + + A
Sbjct: 94 CGCGEKEIVLERA 106
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 130 HSKTVENTMQMLN-------DEGSLKGIAVCDAGCGTGSLAIPLAKQGA 171
H + +++T++ L+ ++ K V D GCGTG L++ AK GA
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA 61
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA 171
+L + +L+G V D G GTG L+I A+ GA
Sbjct: 75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGA 106
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISXXXXXXXXXXXXXXXXX 196
+++ ND G++ G +V DAG G G LA GA V+A DI
Sbjct: 42 IEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDID--------PDAIETAKR 92
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVV 224
+ GG F V D+ + GKYDT +
Sbjct: 93 NCGG-----VNFXVADVSEISGKYDTWI 115
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 99 EYFNNSGFQRWKKIYGETDDVNRVQLD---IRL--------GHSKTVENTMQMLNDEGSL 147
+Y++ R I E +D V D IRL G+ +T + + ML E ++
Sbjct: 1 KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQ--LAMLGIERAM 58
Query: 148 -KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISXXXXXXXXXXXXXXXXXDNGGEAPVM 205
K + V D G G+G LAI K GA V A+DIS NG +
Sbjct: 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL-----NGIYDIAL 113
Query: 206 PKFEVKDLESLDGKYDTVVC 225
K + L +DGK+D +V
Sbjct: 114 QKTSL--LADVDGKFDLIVA 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,503,376
Number of Sequences: 62578
Number of extensions: 305323
Number of successful extensions: 863
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 14
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)