Query 020710
Match_columns 322
No_of_seqs 288 out of 2840
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02585 magnesium protoporphy 100.0 2.8E-42 6E-47 310.1 27.6 267 53-322 49-315 (315)
2 PRK07580 Mg-protoporphyrin IX 100.0 7.8E-27 1.7E-31 203.3 21.3 223 91-321 7-229 (230)
3 TIGR02021 BchM-ChlM magnesium 100.0 1E-26 2.2E-31 201.1 19.7 217 94-318 2-218 (219)
4 COG2226 UbiE Methylase involve 99.9 1.3E-22 2.7E-27 174.4 16.5 188 92-303 8-221 (238)
5 PF01209 Ubie_methyltran: ubiE 99.9 2.8E-23 6E-28 180.1 9.8 188 93-304 5-218 (233)
6 COG2227 UbiG 2-polyprenyl-3-me 99.9 3.3E-22 7.1E-27 168.8 12.5 146 147-304 58-213 (243)
7 PLN02244 tocopherol O-methyltr 99.9 1.1E-20 2.3E-25 173.5 23.5 200 93-308 57-280 (340)
8 PLN02396 hexaprenyldihydroxybe 99.9 8.5E-20 1.8E-24 165.1 21.3 149 147-305 130-288 (322)
9 PLN02233 ubiquinone biosynthes 99.9 1.4E-20 3E-25 166.7 14.7 194 93-306 31-248 (261)
10 KOG1270 Methyltransferases [Co 99.8 5.7E-21 1.2E-25 162.3 10.1 148 149-303 90-246 (282)
11 PRK11036 putative S-adenosyl-L 99.8 7.7E-20 1.7E-24 161.7 16.3 149 148-305 44-206 (255)
12 PF02353 CMAS: Mycolic acid cy 99.8 2.2E-19 4.8E-24 159.1 13.8 154 141-307 55-218 (273)
13 PF13489 Methyltransf_23: Meth 99.8 2.8E-19 6.1E-24 146.6 11.6 137 147-303 21-160 (161)
14 COG2230 Cfa Cyclopropane fatty 99.8 1.5E-18 3.2E-23 151.8 16.3 152 142-306 66-223 (283)
15 PRK10258 biotin biosynthesis p 99.8 4.8E-19 1E-23 156.3 13.6 190 92-321 4-199 (251)
16 PRK05785 hypothetical protein; 99.8 1.5E-18 3.3E-23 150.4 16.1 181 92-303 6-208 (226)
17 TIGR02752 MenG_heptapren 2-hep 99.8 3.2E-18 7E-23 149.2 16.6 192 94-308 4-220 (231)
18 PTZ00098 phosphoethanolamine N 99.8 4.6E-18 9.9E-23 150.8 17.0 184 100-308 15-204 (263)
19 PRK14103 trans-aconitate 2-met 99.8 3.1E-18 6.7E-23 151.5 14.8 151 135-305 19-183 (255)
20 KOG1540 Ubiquinone biosynthesi 99.8 4E-18 8.7E-23 144.1 12.5 189 95-303 60-278 (296)
21 PRK11207 tellurite resistance 99.8 7.5E-18 1.6E-22 143.1 14.3 148 135-306 20-170 (197)
22 PLN02490 MPBQ/MSBQ methyltrans 99.8 4.7E-17 1E-21 147.7 18.2 141 148-309 113-259 (340)
23 TIGR00452 methyltransferase, p 99.7 1.3E-17 2.8E-22 150.2 12.7 156 135-308 111-275 (314)
24 PRK15068 tRNA mo(5)U34 methylt 99.7 1.8E-17 3.9E-22 150.8 12.7 158 135-308 112-276 (322)
25 PRK06202 hypothetical protein; 99.7 3.1E-17 6.6E-22 143.1 13.6 148 148-307 60-223 (232)
26 TIGR00477 tehB tellurite resis 99.7 5.7E-17 1.2E-21 137.5 14.9 148 135-306 20-169 (195)
27 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.8E-17 4E-22 145.8 11.8 161 147-316 55-238 (247)
28 TIGR00740 methyltransferase, p 99.7 3.3E-17 7.2E-22 143.5 13.0 151 147-304 52-225 (239)
29 PLN02336 phosphoethanolamine N 99.7 1.2E-16 2.5E-21 153.8 17.7 150 135-306 256-414 (475)
30 PF03848 TehB: Tellurite resis 99.7 1.1E-16 2.5E-21 133.3 14.2 148 135-306 20-169 (192)
31 PF13847 Methyltransf_31: Meth 99.7 1.1E-17 2.5E-22 136.2 7.5 100 148-257 3-109 (152)
32 PRK00216 ubiE ubiquinone/menaq 99.7 1.6E-16 3.4E-21 138.9 15.2 194 92-307 8-226 (239)
33 PF12847 Methyltransf_18: Meth 99.7 8E-17 1.7E-21 124.1 11.0 103 148-257 1-110 (112)
34 PRK01683 trans-aconitate 2-met 99.7 2.2E-16 4.7E-21 140.0 15.1 151 135-303 21-184 (258)
35 smart00828 PKS_MT Methyltransf 99.7 1.7E-16 3.7E-21 137.7 13.7 142 150-308 1-146 (224)
36 PF07021 MetW: Methionine bios 99.7 5.1E-16 1.1E-20 127.7 14.6 154 135-311 5-172 (193)
37 PRK12335 tellurite resistance 99.7 3.8E-16 8.2E-21 140.4 14.4 137 148-306 120-259 (287)
38 TIGR03840 TMPT_Se_Te thiopurin 99.7 1E-15 2.3E-20 131.1 16.3 143 148-306 34-187 (213)
39 KOG4300 Predicted methyltransf 99.7 1.7E-16 3.6E-21 130.2 10.6 151 148-309 76-235 (252)
40 TIGR02081 metW methionine bios 99.7 1.4E-15 2.9E-20 129.1 15.0 143 148-308 13-169 (194)
41 PF08241 Methyltransf_11: Meth 99.7 2.9E-16 6.3E-21 116.8 9.1 91 153-256 1-95 (95)
42 PF13649 Methyltransf_25: Meth 99.7 2.5E-16 5.4E-21 119.2 8.7 92 152-252 1-101 (101)
43 PRK05134 bifunctional 3-demeth 99.7 4.5E-15 9.8E-20 129.5 17.7 148 147-306 47-205 (233)
44 PRK11705 cyclopropane fatty ac 99.7 1.8E-15 3.9E-20 140.7 15.8 144 146-306 165-312 (383)
45 PRK13255 thiopurine S-methyltr 99.7 3.8E-15 8.2E-20 128.1 16.3 141 148-306 37-190 (218)
46 TIGR03587 Pse_Me-ase pseudamin 99.7 1.1E-15 2.5E-20 130.2 12.8 95 148-255 43-141 (204)
47 TIGR02072 BioC biotin biosynth 99.7 6.5E-16 1.4E-20 135.0 11.5 163 134-319 20-189 (240)
48 PF05401 NodS: Nodulation prot 99.6 6.9E-15 1.5E-19 121.3 14.9 131 148-303 43-176 (201)
49 PRK11873 arsM arsenite S-adeno 99.6 5.8E-15 1.3E-19 131.9 15.3 145 147-306 76-230 (272)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 4E-15 8.7E-20 128.6 13.7 159 135-308 29-212 (223)
51 KOG2361 Predicted methyltransf 99.6 3.9E-15 8.5E-20 125.2 12.3 193 100-308 30-239 (264)
52 TIGR01983 UbiG ubiquinone bios 99.6 3.2E-14 6.9E-19 123.3 17.4 148 148-306 45-203 (224)
53 KOG1271 Methyltransferases [Ge 99.6 8.7E-15 1.9E-19 117.8 12.3 187 96-316 16-214 (227)
54 PRK08317 hypothetical protein; 99.6 2E-14 4.4E-19 125.4 15.8 156 135-308 9-178 (241)
55 TIGR02716 C20_methyl_CrtF C-20 99.6 1.5E-14 3.3E-19 131.3 15.4 148 147-304 148-304 (306)
56 PF08003 Methyltransf_9: Prote 99.6 5.5E-15 1.2E-19 129.6 11.7 154 134-307 104-268 (315)
57 COG4976 Predicted methyltransf 99.6 2.8E-15 6.1E-20 124.9 8.0 152 135-309 112-268 (287)
58 PF08242 Methyltransf_12: Meth 99.6 4.5E-16 9.7E-21 117.3 1.4 95 153-254 1-99 (99)
59 TIGR00537 hemK_rel_arch HemK-r 99.6 9.3E-14 2E-18 116.3 15.4 127 148-306 19-165 (179)
60 TIGR03438 probable methyltrans 99.6 1.5E-13 3.2E-18 124.3 17.9 145 98-256 20-175 (301)
61 PRK00107 gidB 16S rRNA methylt 99.6 1.8E-13 3.8E-18 114.8 15.8 120 148-305 45-168 (187)
62 TIGR00138 gidB 16S rRNA methyl 99.5 2.6E-13 5.7E-18 113.5 15.9 123 148-308 42-171 (181)
63 KOG1541 Predicted protein carb 99.5 7.7E-14 1.7E-18 115.7 11.7 125 107-252 17-154 (270)
64 PF05724 TPMT: Thiopurine S-me 99.5 1E-13 2.2E-18 119.0 12.3 148 147-307 36-191 (218)
65 COG4106 Tam Trans-aconitate me 99.5 7.8E-14 1.7E-18 115.5 10.2 148 135-301 20-181 (257)
66 PRK13256 thiopurine S-methyltr 99.5 5.5E-13 1.2E-17 114.3 15.6 152 138-303 33-194 (226)
67 PLN02336 phosphoethanolamine N 99.5 6.3E-14 1.4E-18 134.9 10.9 149 135-304 27-180 (475)
68 PRK08287 cobalt-precorrin-6Y C 99.5 7.6E-13 1.7E-17 111.5 15.1 133 136-307 22-157 (187)
69 smart00138 MeTrc Methyltransfe 99.5 1.6E-13 3.4E-18 121.7 10.8 112 148-259 99-243 (264)
70 PRK14967 putative methyltransf 99.5 2.4E-12 5.3E-17 111.5 15.8 111 137-256 25-157 (223)
71 PRK00517 prmA ribosomal protei 99.5 1.8E-12 4E-17 114.2 15.2 136 131-307 103-239 (250)
72 TIGR03533 L3_gln_methyl protei 99.5 1.1E-12 2.4E-17 117.5 13.5 153 123-310 98-278 (284)
73 PRK14968 putative methyltransf 99.4 3.4E-12 7.3E-17 107.4 15.2 129 148-305 23-172 (188)
74 TIGR03534 RF_mod_PrmC protein- 99.4 1E-12 2.2E-17 115.9 12.2 143 127-305 70-240 (251)
75 PF07109 Mg-por_mtran_C: Magne 99.4 5.1E-13 1.1E-17 97.2 8.3 97 225-321 1-97 (97)
76 PRK00121 trmB tRNA (guanine-N( 99.4 8.4E-13 1.8E-17 112.6 10.8 101 148-256 40-154 (202)
77 TIGR00536 hemK_fam HemK family 99.4 2.1E-12 4.5E-17 116.0 13.5 131 118-257 86-243 (284)
78 PF06325 PrmA: Ribosomal prote 99.4 2.2E-12 4.8E-17 115.1 12.7 144 125-307 139-284 (295)
79 PRK13944 protein-L-isoaspartat 99.4 1.9E-12 4.2E-17 110.6 11.8 92 133-234 60-157 (205)
80 TIGR00406 prmA ribosomal prote 99.4 4.4E-12 9.5E-17 114.0 14.3 137 132-305 144-282 (288)
81 PRK14966 unknown domain/N5-glu 99.4 2.3E-12 4.9E-17 119.2 12.5 97 118-228 226-328 (423)
82 COG2264 PrmA Ribosomal protein 99.4 5.8E-12 1.3E-16 111.4 14.5 148 125-308 140-290 (300)
83 PRK11088 rrmA 23S rRNA methylt 99.4 6.6E-12 1.4E-16 112.1 14.3 134 148-315 85-227 (272)
84 TIGR02469 CbiT precorrin-6Y C5 99.4 4.5E-12 9.8E-17 99.0 11.7 106 135-256 9-120 (124)
85 PRK06922 hypothetical protein; 99.4 1.7E-12 3.8E-17 125.2 10.9 100 148-256 418-535 (677)
86 PLN03075 nicotianamine synthas 99.4 4.7E-12 1E-16 112.4 12.8 102 148-257 123-232 (296)
87 KOG2899 Predicted methyltransf 99.4 4.5E-12 9.8E-17 106.8 11.8 154 147-303 57-254 (288)
88 PRK15001 SAM-dependent 23S rib 99.4 2.1E-12 4.6E-17 119.1 10.1 115 135-257 218-339 (378)
89 PRK01544 bifunctional N5-gluta 99.4 4.5E-12 9.8E-17 122.1 12.6 110 111-227 80-214 (506)
90 COG2263 Predicted RNA methylas 99.4 3.9E-11 8.5E-16 98.0 16.1 139 133-308 30-170 (198)
91 PF05175 MTS: Methyltransferas 99.4 6.2E-12 1.3E-16 104.3 11.7 109 135-254 21-136 (170)
92 PRK00377 cbiT cobalt-precorrin 99.4 2.6E-11 5.6E-16 103.1 15.4 122 146-302 38-166 (198)
93 PRK09328 N5-glutamine S-adenos 99.4 9.7E-12 2.1E-16 111.2 13.0 146 124-304 87-260 (275)
94 PRK11805 N5-glutamine S-adenos 99.4 1.2E-11 2.5E-16 112.0 13.4 123 124-256 111-261 (307)
95 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.3E-11 2.8E-16 117.6 14.4 116 131-262 283-406 (443)
96 TIGR00080 pimt protein-L-isoas 99.4 1.2E-11 2.6E-16 106.6 12.8 90 133-233 65-160 (215)
97 PRK04266 fibrillarin; Provisio 99.3 2E-11 4.3E-16 105.5 13.9 144 134-307 58-211 (226)
98 COG2890 HemK Methylase of poly 99.3 2.6E-11 5.7E-16 108.1 15.1 104 113-228 79-185 (280)
99 PRK09489 rsmC 16S ribosomal RN 99.3 8E-12 1.7E-16 114.5 11.5 110 135-256 186-301 (342)
100 PF05891 Methyltransf_PK: AdoM 99.3 1.6E-12 3.4E-17 109.2 6.2 144 148-307 55-202 (218)
101 PRK13942 protein-L-isoaspartat 99.3 1.3E-11 2.8E-16 106.0 11.5 91 132-233 63-159 (212)
102 PF13659 Methyltransf_26: Meth 99.3 4.8E-12 1E-16 98.1 8.0 101 149-256 1-113 (117)
103 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.7E-11 3.7E-16 103.9 11.2 101 149-257 17-131 (194)
104 TIGR01177 conserved hypothetic 99.3 2E-11 4.4E-16 111.9 12.1 123 147-305 181-314 (329)
105 PHA03411 putative methyltransf 99.3 1.3E-11 2.7E-16 108.1 10.1 76 148-236 64-143 (279)
106 TIGR03704 PrmC_rel_meth putati 99.3 3.3E-11 7.1E-16 106.1 12.6 142 126-304 66-238 (251)
107 PRK00312 pcm protein-L-isoaspa 99.3 3.4E-11 7.4E-16 103.5 11.7 91 132-233 65-158 (212)
108 PRK03522 rumB 23S rRNA methylu 99.3 6.1E-11 1.3E-15 108.0 12.5 114 133-262 161-280 (315)
109 COG4123 Predicted O-methyltran 99.3 8.8E-11 1.9E-15 101.3 12.5 103 148-257 44-169 (248)
110 PF06080 DUF938: Protein of un 99.2 8.8E-11 1.9E-15 98.3 11.8 144 151-303 28-189 (204)
111 PTZ00146 fibrillarin; Provisio 99.2 9.2E-11 2E-15 103.8 11.9 148 130-306 114-271 (293)
112 PF03291 Pox_MCEL: mRNA cappin 99.2 1.9E-10 4.2E-15 104.6 13.9 156 148-304 62-265 (331)
113 PF12147 Methyltransf_20: Puta 99.2 5.3E-10 1.2E-14 97.4 15.5 164 133-306 122-298 (311)
114 PRK14121 tRNA (guanine-N(7)-)- 99.2 3.4E-10 7.3E-15 104.2 15.1 161 136-307 113-287 (390)
115 PLN02232 ubiquinone biosynthes 99.2 6.9E-11 1.5E-15 97.0 9.0 124 174-306 1-147 (160)
116 COG2518 Pcm Protein-L-isoaspar 99.2 1.8E-10 3.9E-15 96.6 11.1 99 132-245 59-160 (209)
117 KOG3010 Methyltransferase [Gen 99.2 4.3E-11 9.4E-16 101.1 6.8 94 151-254 36-133 (261)
118 KOG2940 Predicted methyltransf 99.2 9.8E-11 2.1E-15 98.0 7.9 155 149-320 73-241 (325)
119 PLN02781 Probable caffeoyl-CoA 99.1 3.7E-10 8E-15 98.4 11.2 110 135-258 57-178 (234)
120 smart00650 rADc Ribosomal RNA 99.1 2.6E-10 5.7E-15 94.4 9.8 106 135-256 3-111 (169)
121 TIGR00479 rumA 23S rRNA (uraci 99.1 5.9E-10 1.3E-14 106.0 13.4 113 133-261 280-401 (431)
122 PRK11188 rrmJ 23S rRNA methylt 99.1 8.2E-10 1.8E-14 94.6 12.6 91 147-256 50-163 (209)
123 COG2242 CobL Precorrin-6B meth 99.1 2.9E-09 6.3E-14 87.5 15.1 124 146-306 32-161 (187)
124 PRK04457 spermidine synthase; 99.1 5.7E-10 1.2E-14 98.8 11.9 119 148-273 66-195 (262)
125 PRK07402 precorrin-6B methylas 99.1 7.9E-10 1.7E-14 93.8 12.1 104 136-256 31-140 (196)
126 COG2813 RsmC 16S RNA G1207 met 99.1 2.5E-10 5.4E-15 100.6 8.8 107 135-252 148-260 (300)
127 PF05219 DREV: DREV methyltran 99.1 4.2E-10 9.2E-15 96.9 9.7 137 148-306 94-240 (265)
128 PF01135 PCMT: Protein-L-isoas 99.1 4.2E-10 9.1E-15 95.9 9.3 93 131-234 58-156 (209)
129 PRK00811 spermidine synthase; 99.1 9.1E-10 2E-14 98.7 11.9 107 148-257 76-190 (283)
130 PRK11783 rlmL 23S rRNA m(2)G24 99.1 7.3E-10 1.6E-14 111.0 12.4 136 148-314 538-688 (702)
131 TIGR02085 meth_trns_rumB 23S r 99.1 1E-09 2.3E-14 102.2 12.0 103 148-263 233-341 (374)
132 PLN02672 methionine S-methyltr 99.1 9.4E-10 2E-14 112.7 11.7 116 111-228 83-212 (1082)
133 COG2265 TrmA SAM-dependent met 99.1 9E-10 2E-14 103.5 10.7 118 131-264 279-404 (432)
134 cd02440 AdoMet_MTases S-adenos 99.1 1.2E-09 2.7E-14 81.4 9.5 97 151-256 1-102 (107)
135 PRK13943 protein-L-isoaspartat 99.1 8E-10 1.7E-14 100.2 10.0 91 133-234 68-164 (322)
136 PF01596 Methyltransf_3: O-met 99.1 1.5E-09 3.3E-14 92.2 11.0 100 148-259 45-156 (205)
137 PHA03412 putative methyltransf 99.0 2.8E-09 6.1E-14 91.3 12.0 92 149-253 50-158 (241)
138 PRK10901 16S rRNA methyltransf 99.0 3.6E-09 7.8E-14 100.4 13.6 104 147-259 243-373 (427)
139 PRK14904 16S rRNA methyltransf 99.0 4.6E-09 1E-13 100.2 13.7 107 147-261 249-380 (445)
140 PRK14901 16S rRNA methyltransf 99.0 6.4E-09 1.4E-13 98.9 14.4 106 147-260 251-386 (434)
141 PRK15128 23S rRNA m(5)C1962 me 99.0 8.1E-09 1.8E-13 96.5 14.1 102 148-256 220-337 (396)
142 PRK04148 hypothetical protein; 99.0 5.7E-09 1.2E-13 81.8 11.0 88 148-255 16-108 (134)
143 KOG1975 mRNA cap methyltransfe 99.0 4.1E-09 8.9E-14 92.7 10.9 156 148-305 117-316 (389)
144 PRK10909 rsmD 16S rRNA m(2)G96 99.0 5.4E-09 1.2E-13 88.5 11.2 117 127-256 34-157 (199)
145 PRK14902 16S rRNA methyltransf 99.0 9.9E-09 2.1E-13 98.0 14.0 106 147-260 249-381 (444)
146 PF00891 Methyltransf_2: O-met 99.0 2.4E-09 5.3E-14 93.8 9.1 89 147-251 99-190 (241)
147 PRK01581 speE spermidine synth 99.0 2.5E-08 5.5E-13 90.8 15.2 104 148-257 150-267 (374)
148 PLN02476 O-methyltransferase 99.0 7.6E-09 1.7E-13 91.5 11.4 109 135-257 107-227 (278)
149 PTZ00338 dimethyladenosine tra 98.9 4.4E-09 9.5E-14 94.4 9.9 97 134-241 25-122 (294)
150 TIGR02143 trmA_only tRNA (urac 98.9 3.9E-09 8.5E-14 97.5 9.8 114 133-264 186-319 (353)
151 PRK14903 16S rRNA methyltransf 98.9 4.2E-09 9.1E-14 99.8 10.2 108 147-262 236-370 (431)
152 PRK05031 tRNA (uracil-5-)-meth 98.9 7.4E-09 1.6E-13 96.0 11.6 100 149-262 207-326 (362)
153 PLN02366 spermidine synthase 98.9 1.4E-08 3.1E-13 91.6 12.7 105 148-256 91-204 (308)
154 PF01739 CheR: CheR methyltran 98.9 4.4E-09 9.6E-14 88.7 8.5 127 134-260 16-177 (196)
155 TIGR00563 rsmB ribosomal RNA s 98.9 9.3E-09 2E-13 97.6 11.6 108 147-261 237-371 (426)
156 COG2519 GCD14 tRNA(1-methylade 98.9 2.4E-08 5.2E-13 85.7 12.8 102 143-258 89-196 (256)
157 TIGR00446 nop2p NOL1/NOP2/sun 98.9 8.6E-09 1.9E-13 91.6 10.5 108 147-262 70-203 (264)
158 TIGR00417 speE spermidine synt 98.9 1.7E-08 3.7E-13 89.9 12.1 106 148-257 72-185 (270)
159 PRK03612 spermidine synthase; 98.9 2.1E-08 4.7E-13 97.2 13.7 104 148-257 297-414 (521)
160 KOG2904 Predicted methyltransf 98.9 9E-09 1.9E-13 88.6 9.3 102 121-229 121-232 (328)
161 PF05958 tRNA_U5-meth_tr: tRNA 98.9 8.4E-09 1.8E-13 95.3 9.7 115 131-263 183-317 (352)
162 COG4122 Predicted O-methyltran 98.9 1.2E-08 2.6E-13 86.8 9.8 109 135-257 48-165 (219)
163 PRK14896 ksgA 16S ribosomal RN 98.9 1.2E-08 2.6E-13 90.4 10.1 83 134-229 18-101 (258)
164 TIGR00095 RNA methyltransferas 98.9 3.5E-08 7.7E-13 83.1 12.3 114 133-258 36-159 (189)
165 TIGR03439 methyl_EasF probable 98.9 1.6E-07 3.5E-12 85.0 17.3 141 98-251 33-190 (319)
166 PF08704 GCD14: tRNA methyltra 98.8 9.3E-08 2E-12 83.3 14.3 121 146-304 38-169 (247)
167 PRK00274 ksgA 16S ribosomal RN 98.8 1.3E-08 2.8E-13 90.8 8.5 82 133-228 30-114 (272)
168 PF05148 Methyltransf_8: Hypot 98.8 1.5E-07 3.2E-12 78.7 13.8 136 130-315 56-194 (219)
169 PRK11727 23S rRNA mA1618 methy 98.8 5.8E-08 1.3E-12 87.8 12.4 77 148-231 114-201 (321)
170 PRK10611 chemotaxis methyltran 98.8 3.9E-08 8.5E-13 87.6 10.0 112 149-260 116-264 (287)
171 PF10294 Methyltransf_16: Puta 98.8 5.2E-08 1.1E-12 80.9 10.0 93 147-249 44-147 (173)
172 TIGR00755 ksgA dimethyladenosi 98.8 5.5E-08 1.2E-12 85.9 10.6 106 133-256 17-127 (253)
173 KOG3045 Predicted RNA methylas 98.8 1.7E-07 3.6E-12 80.3 12.6 135 130-316 164-301 (325)
174 KOG3420 Predicted RNA methylas 98.8 4.7E-08 1E-12 76.3 8.3 88 133-229 32-124 (185)
175 PLN02589 caffeoyl-CoA O-methyl 98.8 7.8E-08 1.7E-12 84.0 10.7 109 136-258 69-190 (247)
176 PF02390 Methyltransf_4: Putat 98.7 3.6E-08 7.9E-13 83.4 8.2 101 149-257 18-132 (195)
177 TIGR00438 rrmJ cell division p 98.7 2.9E-08 6.2E-13 83.7 7.6 91 147-256 31-144 (188)
178 COG3963 Phospholipid N-methylt 98.7 8.8E-08 1.9E-12 76.7 9.5 110 131-256 34-155 (194)
179 COG1352 CheR Methylase of chem 98.7 4.1E-07 8.9E-12 80.1 13.9 130 130-259 78-242 (268)
180 KOG3178 Hydroxyindole-O-methyl 98.7 4.6E-08 1E-12 87.7 7.9 143 149-307 178-331 (342)
181 PF07942 N2227: N2227-like pro 98.7 7.7E-07 1.7E-11 78.3 15.2 153 148-312 56-248 (270)
182 PF03602 Cons_hypoth95: Conser 98.7 6E-08 1.3E-12 81.1 7.9 124 125-258 20-153 (183)
183 TIGR00478 tly hemolysin TlyA f 98.7 2.5E-07 5.5E-12 79.8 11.2 50 136-185 62-113 (228)
184 KOG1499 Protein arginine N-met 98.7 9.5E-08 2.1E-12 85.6 8.4 76 146-229 58-137 (346)
185 PF01170 UPF0020: Putative RNA 98.6 3.9E-07 8.4E-12 76.1 11.6 104 147-257 27-150 (179)
186 PF05185 PRMT5: PRMT5 arginine 98.6 1.7E-07 3.6E-12 88.9 10.5 99 149-254 187-293 (448)
187 KOG1500 Protein arginine N-met 98.6 2.8E-07 6.2E-12 81.6 10.2 97 147-251 176-275 (517)
188 PF04816 DUF633: Family of unk 98.6 3.3E-07 7.2E-12 77.8 10.3 122 152-309 1-127 (205)
189 PF09445 Methyltransf_15: RNA 98.6 7E-08 1.5E-12 78.5 5.9 69 151-226 2-76 (163)
190 COG2521 Predicted archaeal met 98.6 1.7E-07 3.7E-12 79.1 7.9 143 136-306 122-277 (287)
191 COG0220 Predicted S-adenosylme 98.6 8.2E-07 1.8E-11 76.5 12.2 152 149-308 49-224 (227)
192 KOG0820 Ribosomal RNA adenine 98.6 3.7E-07 8E-12 78.8 9.9 82 140-228 50-132 (315)
193 PF02475 Met_10: Met-10+ like- 98.6 2.9E-07 6.3E-12 77.8 9.2 96 147-255 100-199 (200)
194 KOG1269 SAM-dependent methyltr 98.6 2.3E-07 5.1E-12 85.2 9.2 101 147-256 109-213 (364)
195 COG1092 Predicted SAM-dependen 98.5 9.4E-07 2E-11 81.8 12.2 103 148-256 217-334 (393)
196 KOG2730 Methylase [General fun 98.5 6.7E-08 1.5E-12 80.7 4.2 119 94-226 45-172 (263)
197 PF10672 Methyltrans_SAM: S-ad 98.5 5E-07 1.1E-11 80.4 9.6 103 148-256 123-236 (286)
198 PF09243 Rsm22: Mitochondrial 98.5 1.2E-06 2.5E-11 78.2 11.4 108 147-260 32-142 (274)
199 COG1041 Predicted DNA modifica 98.5 8.7E-07 1.9E-11 79.8 10.4 103 147-257 196-309 (347)
200 PRK00050 16S rRNA m(4)C1402 me 98.5 3.5E-07 7.5E-12 81.8 7.4 86 132-230 6-101 (296)
201 KOG3191 Predicted N6-DNA-methy 98.5 5E-06 1.1E-10 67.7 12.8 75 148-231 43-122 (209)
202 PF11968 DUF3321: Putative met 98.4 1.1E-06 2.4E-11 74.0 8.9 137 135-312 33-187 (219)
203 PLN02823 spermine synthase 98.4 2E-06 4.3E-11 78.6 10.9 105 148-257 103-219 (336)
204 PF04672 Methyltransf_19: S-ad 98.4 1.3E-06 2.7E-11 76.4 8.5 168 131-312 53-242 (267)
205 COG0030 KsgA Dimethyladenosine 98.4 2.1E-06 4.6E-11 74.9 9.2 87 134-234 19-109 (259)
206 KOG1661 Protein-L-isoaspartate 98.3 3.8E-06 8.3E-11 69.9 9.3 120 131-257 66-194 (237)
207 PF07091 FmrO: Ribosomal RNA m 98.3 4.1E-06 8.9E-11 72.2 9.0 140 147-309 104-247 (251)
208 COG0742 N6-adenine-specific me 98.3 1E-05 2.2E-10 67.0 10.9 122 127-258 23-154 (187)
209 KOG3987 Uncharacterized conser 98.3 1.4E-07 3.1E-12 78.0 -0.2 94 147-256 111-207 (288)
210 PF13679 Methyltransf_32: Meth 98.3 1.4E-05 2.9E-10 64.1 11.2 89 147-246 24-122 (141)
211 COG2520 Predicted methyltransf 98.3 1.2E-05 2.6E-10 73.1 11.9 96 148-256 188-287 (341)
212 PF01564 Spermine_synth: Sperm 98.3 6.6E-06 1.4E-10 72.2 9.8 106 148-257 76-190 (246)
213 PRK04338 N(2),N(2)-dimethylgua 98.3 8.4E-06 1.8E-10 76.0 10.9 71 149-227 58-133 (382)
214 PRK00536 speE spermidine synth 98.2 1.9E-05 4.2E-10 69.5 12.5 96 147-256 71-169 (262)
215 PF03141 Methyltransf_29: Puta 98.2 1.1E-06 2.4E-11 82.3 3.7 119 131-260 99-221 (506)
216 PRK11933 yebU rRNA (cytosine-C 98.2 1.5E-05 3.2E-10 76.1 11.3 109 147-263 112-247 (470)
217 KOG1663 O-methyltransferase [S 98.2 4.4E-05 9.5E-10 64.8 12.6 98 148-257 73-182 (237)
218 KOG2187 tRNA uracil-5-methyltr 98.2 6.8E-06 1.5E-10 77.1 8.2 105 147-263 382-497 (534)
219 COG0421 SpeE Spermidine syntha 98.2 1.5E-05 3.2E-10 71.0 10.0 104 149-257 77-189 (282)
220 COG2384 Predicted SAM-dependen 98.2 5.7E-05 1.2E-09 63.7 12.9 134 134-308 7-145 (226)
221 PF08123 DOT1: Histone methyla 98.1 1.5E-05 3.3E-10 67.7 8.9 118 134-256 31-157 (205)
222 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 3.6E-05 7.8E-10 67.4 11.3 158 136-305 45-238 (256)
223 PRK01544 bifunctional N5-gluta 98.1 1.4E-05 3E-10 77.5 8.9 103 148-258 347-462 (506)
224 COG3897 Predicted methyltransf 98.1 1.2E-05 2.6E-10 66.3 7.1 103 147-260 78-182 (218)
225 COG0116 Predicted N6-adenine-s 98.1 6.1E-05 1.3E-09 69.0 11.9 103 147-256 190-342 (381)
226 KOG2798 Putative trehalase [Ca 98.0 8.1E-05 1.8E-09 65.8 11.9 151 148-308 150-339 (369)
227 PF02527 GidB: rRNA small subu 98.0 0.00014 3E-09 60.9 12.9 122 151-307 51-176 (184)
228 COG0357 GidB Predicted S-adeno 98.0 0.00029 6.3E-09 60.0 14.9 168 95-307 22-196 (215)
229 KOG2915 tRNA(1-methyladenosine 98.0 0.0002 4.4E-09 62.1 13.9 107 135-258 95-211 (314)
230 TIGR00308 TRM1 tRNA(guanine-26 98.0 5E-05 1.1E-09 70.5 10.6 89 149-251 45-140 (374)
231 PF00398 RrnaAD: Ribosomal RNA 98.0 6.8E-05 1.5E-09 66.6 10.8 97 132-246 17-119 (262)
232 COG1189 Predicted rRNA methyla 98.0 5.3E-05 1.1E-09 64.7 9.4 153 135-307 65-225 (245)
233 PRK11783 rlmL 23S rRNA m(2)G24 97.9 0.00015 3.2E-09 73.2 12.8 75 148-229 190-313 (702)
234 PF01728 FtsJ: FtsJ-like methy 97.8 5.4E-05 1.2E-09 63.3 6.3 47 135-181 7-59 (181)
235 COG0500 SmtA SAM-dependent met 97.7 0.00022 4.7E-09 56.8 9.2 92 152-255 52-152 (257)
236 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00014 3E-09 66.2 8.8 88 133-229 34-135 (311)
237 PF03059 NAS: Nicotianamine sy 97.7 0.00049 1.1E-08 61.0 10.6 101 148-256 120-228 (276)
238 TIGR01444 fkbM_fam methyltrans 97.6 0.00016 3.4E-09 57.8 6.4 60 151-218 1-62 (143)
239 PF05971 Methyltransf_10: Prot 97.5 0.00051 1.1E-08 61.4 9.2 93 135-234 87-192 (299)
240 PRK10742 putative methyltransf 97.5 0.00056 1.2E-08 59.3 9.1 81 151-231 91-176 (250)
241 COG4262 Predicted spermidine s 97.5 0.0014 3E-08 59.3 11.7 102 149-256 290-405 (508)
242 PRK11760 putative 23S rRNA C24 97.5 0.00048 1E-08 62.4 8.6 67 147-228 210-279 (357)
243 TIGR00006 S-adenosyl-methyltra 97.5 0.00041 8.8E-09 62.4 8.1 87 131-229 6-102 (305)
244 COG0144 Sun tRNA and rRNA cyto 97.5 0.0036 7.9E-08 58.0 14.3 108 147-262 155-292 (355)
245 KOG1331 Predicted methyltransf 97.5 8.7E-05 1.9E-09 64.9 3.2 100 135-252 34-137 (293)
246 TIGR02987 met_A_Alw26 type II 97.5 0.00038 8.2E-09 68.1 7.9 75 148-230 31-123 (524)
247 COG4076 Predicted RNA methylas 97.4 0.00025 5.4E-09 58.2 5.3 71 149-227 33-104 (252)
248 PF01269 Fibrillarin: Fibrilla 97.4 0.002 4.3E-08 54.8 10.9 111 130-255 55-175 (229)
249 KOG1709 Guanidinoacetate methy 97.4 0.0011 2.5E-08 55.6 9.2 110 135-259 92-207 (271)
250 TIGR00027 mthyl_TIGR00027 meth 97.4 0.0062 1.3E-07 53.9 14.3 150 149-304 82-248 (260)
251 PHA01634 hypothetical protein 97.3 0.0019 4.1E-08 49.7 8.3 48 148-195 28-76 (156)
252 KOG3201 Uncharacterized conser 97.2 0.00045 9.7E-09 55.4 4.5 105 148-259 29-142 (201)
253 COG1889 NOP1 Fibrillarin-like 97.2 0.0072 1.6E-07 50.5 11.4 108 130-252 58-174 (231)
254 KOG4058 Uncharacterized conser 97.1 0.0062 1.3E-07 48.2 9.3 87 132-228 59-147 (199)
255 KOG2352 Predicted spermine/spe 97.0 0.0031 6.8E-08 59.4 8.8 94 150-252 50-155 (482)
256 cd00315 Cyt_C5_DNA_methylase C 97.0 0.012 2.5E-07 52.7 12.2 126 151-307 2-144 (275)
257 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0071 1.5E-07 54.3 10.8 108 147-262 84-223 (283)
258 COG0293 FtsJ 23S rRNA methylas 97.0 0.012 2.5E-07 49.8 11.2 74 135-227 31-119 (205)
259 PF13578 Methyltransf_24: Meth 97.0 0.00053 1.1E-08 51.8 2.8 93 153-256 1-103 (106)
260 PF01861 DUF43: Protein of unk 96.9 0.1 2.2E-06 45.2 16.2 138 136-307 32-179 (243)
261 COG3129 Predicted SAM-dependen 96.6 0.0086 1.9E-07 51.0 7.0 97 128-231 55-165 (292)
262 PRK11524 putative methyltransf 96.4 0.0094 2E-07 53.5 7.1 58 131-192 195-252 (284)
263 PF04445 SAM_MT: Putative SAM- 96.4 0.0033 7.2E-08 54.2 3.9 82 150-231 77-163 (234)
264 PF01795 Methyltransf_5: MraW 96.4 0.0057 1.2E-07 55.1 5.4 83 132-226 7-100 (310)
265 COG4627 Uncharacterized protei 96.3 0.0018 3.9E-08 51.6 1.6 84 217-301 45-133 (185)
266 COG0275 Predicted S-adenosylme 96.3 0.019 4.1E-07 51.1 8.0 87 131-229 9-106 (314)
267 PF00145 DNA_methylase: C-5 cy 96.3 0.07 1.5E-06 48.5 12.2 123 151-306 2-142 (335)
268 PF01555 N6_N4_Mtase: DNA meth 96.3 0.011 2.3E-07 50.8 6.4 56 129-188 176-231 (231)
269 PRK13699 putative methylase; P 96.2 0.019 4.1E-07 49.8 7.4 58 132-193 151-208 (227)
270 TIGR00675 dcm DNA-methyltransf 96.2 0.046 1E-06 49.9 10.1 124 152-306 1-140 (315)
271 COG4301 Uncharacterized conser 95.9 0.73 1.6E-05 40.0 15.1 99 149-254 79-189 (321)
272 PF07757 AdoMet_MTase: Predict 95.7 0.015 3.2E-07 43.6 3.9 44 135-178 44-88 (112)
273 KOG3115 Methyltransferase-like 95.7 0.05 1.1E-06 45.6 7.4 46 149-194 61-108 (249)
274 PF03514 GRAS: GRAS domain fam 95.7 0.31 6.7E-06 45.6 13.7 112 135-254 100-241 (374)
275 COG3315 O-Methyltransferase in 95.7 0.22 4.7E-06 45.0 12.1 150 149-304 93-262 (297)
276 PRK07066 3-hydroxybutyryl-CoA 95.7 0.26 5.6E-06 45.0 12.6 166 149-320 7-198 (321)
277 PRK08293 3-hydroxybutyryl-CoA 95.7 0.36 7.8E-06 43.3 13.5 164 150-319 4-198 (287)
278 COG1064 AdhP Zn-dependent alco 95.6 0.053 1.1E-06 49.5 7.8 82 145-245 163-250 (339)
279 KOG2793 Putative N2,N2-dimethy 95.6 0.06 1.3E-06 47.0 7.7 94 149-248 87-189 (248)
280 PF02636 Methyltransf_28: Puta 95.5 0.038 8.2E-07 48.7 6.3 44 149-192 19-72 (252)
281 PF06962 rRNA_methylase: Putat 95.5 0.053 1.1E-06 43.0 6.4 76 172-256 1-90 (140)
282 COG1255 Uncharacterized protei 95.4 0.12 2.6E-06 39.1 7.8 82 149-254 14-100 (129)
283 COG5459 Predicted rRNA methyla 95.4 0.095 2.1E-06 47.6 8.6 106 147-260 112-228 (484)
284 COG1565 Uncharacterized conser 95.4 0.071 1.5E-06 48.7 7.8 60 134-193 63-132 (370)
285 KOG2920 Predicted methyltransf 95.3 0.012 2.5E-07 51.9 2.5 37 147-183 115-152 (282)
286 COG0270 Dcm Site-specific DNA 95.3 0.099 2.2E-06 48.0 8.7 72 149-233 3-81 (328)
287 PF04072 LCM: Leucine carboxyl 95.2 0.29 6.2E-06 40.9 10.5 99 135-244 67-182 (183)
288 KOG2671 Putative RNA methylase 95.2 0.018 3.9E-07 51.9 3.2 74 147-226 207-291 (421)
289 KOG1501 Arginine N-methyltrans 95.1 0.047 1E-06 50.8 5.8 51 149-199 67-118 (636)
290 PF11599 AviRa: RRNA methyltra 95.0 0.025 5.5E-07 47.7 3.5 109 148-256 51-212 (246)
291 PF03686 UPF0146: Uncharacteri 95.0 0.22 4.7E-06 38.6 8.4 84 148-255 13-101 (127)
292 PF04989 CmcI: Cephalosporin h 94.9 0.17 3.7E-06 42.8 8.3 100 148-258 32-147 (206)
293 COG4798 Predicted methyltransf 94.9 0.42 9.1E-06 40.0 10.1 145 146-307 46-206 (238)
294 PF06859 Bin3: Bicoid-interact 94.9 0.013 2.9E-07 44.0 1.4 78 219-303 1-89 (110)
295 PF02737 3HCDH_N: 3-hydroxyacy 94.8 0.92 2E-05 37.7 12.6 104 151-261 1-117 (180)
296 KOG1122 tRNA and rRNA cytosine 94.7 0.14 2.9E-06 47.7 7.6 72 146-225 239-318 (460)
297 KOG1227 Putative methyltransfe 94.6 0.058 1.3E-06 47.8 5.0 97 148-257 194-296 (351)
298 PRK05808 3-hydroxybutyryl-CoA 94.1 1.8 3.9E-05 38.6 13.7 162 150-319 4-195 (282)
299 COG3510 CmcI Cephalosporin hyd 94.0 0.28 6.1E-06 40.8 7.4 93 148-255 69-177 (237)
300 PRK01747 mnmC bifunctional tRN 94.0 0.27 5.9E-06 49.6 9.0 128 148-303 57-224 (662)
301 PF02254 TrkA_N: TrkA-N domain 94.0 0.41 8.8E-06 36.3 8.1 55 157-226 4-69 (116)
302 PRK10458 DNA cytosine methylas 93.8 1.1 2.3E-05 43.2 12.1 42 149-190 88-130 (467)
303 PRK06035 3-hydroxyacyl-CoA deh 93.8 3.2 7E-05 37.2 14.8 162 150-319 4-198 (291)
304 PRK09424 pntA NAD(P) transhydr 93.8 0.44 9.6E-06 46.2 9.5 43 147-189 163-207 (509)
305 KOG2078 tRNA modification enzy 93.7 0.044 9.4E-07 50.9 2.3 50 147-196 248-297 (495)
306 KOG2651 rRNA adenine N-6-methy 93.4 0.29 6.3E-06 45.0 7.1 41 148-188 153-194 (476)
307 PRK06130 3-hydroxybutyryl-CoA 93.3 2.9 6.3E-05 37.8 13.7 162 150-316 5-190 (311)
308 PRK09260 3-hydroxybutyryl-CoA 93.2 2.8 6E-05 37.6 13.3 162 151-319 3-194 (288)
309 PRK11730 fadB multifunctional 93.2 1.3 2.9E-05 45.1 12.3 164 150-319 314-505 (715)
310 KOG1562 Spermidine synthase [A 93.1 0.46 1E-05 42.3 7.7 106 147-256 120-234 (337)
311 PF02005 TRM: N2,N2-dimethylgu 93.1 0.26 5.7E-06 46.0 6.6 95 149-256 50-152 (377)
312 KOG2539 Mitochondrial/chloropl 92.6 0.57 1.2E-05 44.3 8.0 116 134-252 185-309 (491)
313 KOG2918 Carboxymethyl transfer 92.5 1.7 3.6E-05 39.1 10.3 157 148-305 87-276 (335)
314 KOG4589 Cell division protein 91.8 0.23 5E-06 41.2 3.9 34 146-179 67-103 (232)
315 PRK09496 trkA potassium transp 91.6 3.8 8.1E-05 39.2 12.8 78 133-226 216-304 (453)
316 PRK09880 L-idonate 5-dehydroge 91.4 2.5 5.5E-05 38.7 11.0 43 147-189 168-213 (343)
317 COG1867 TRM1 N2,N2-dimethylgua 91.3 0.88 1.9E-05 41.8 7.4 87 149-245 53-145 (380)
318 KOG0822 Protein kinase inhibit 91.2 0.44 9.5E-06 45.7 5.5 97 149-254 368-474 (649)
319 PF03141 Methyltransf_29: Puta 91.1 0.78 1.7E-05 43.9 7.2 119 149-308 366-493 (506)
320 TIGR02437 FadB fatty oxidation 90.6 5 0.00011 41.0 13.0 165 149-319 313-505 (714)
321 PRK11154 fadJ multifunctional 90.6 3.7 8E-05 41.9 12.0 165 149-319 309-502 (708)
322 PRK06129 3-hydroxyacyl-CoA deh 90.6 8.9 0.00019 34.7 13.5 162 150-317 3-194 (308)
323 COG0286 HsdM Type I restrictio 90.3 0.97 2.1E-05 43.9 7.3 85 135-229 176-274 (489)
324 PF07279 DUF1442: Protein of u 90.2 6.1 0.00013 33.7 11.0 107 135-256 30-147 (218)
325 PLN02545 3-hydroxybutyryl-CoA 90.1 10 0.00022 34.0 13.4 162 150-318 5-195 (295)
326 TIGR02441 fa_ox_alpha_mit fatt 89.9 3.6 7.9E-05 42.1 11.4 164 150-319 336-527 (737)
327 PRK07819 3-hydroxybutyryl-CoA 89.7 6.7 0.00015 35.2 11.8 163 150-319 6-199 (286)
328 KOG2352 Predicted spermine/spe 89.3 1.1 2.3E-05 42.8 6.4 118 148-274 295-436 (482)
329 PRK06139 short chain dehydroge 88.6 3.5 7.5E-05 37.8 9.3 73 148-229 6-94 (330)
330 PF03492 Methyltransf_7: SAM d 88.3 1.6 3.5E-05 40.2 6.9 79 147-233 15-121 (334)
331 PRK06124 gluconate 5-dehydroge 88.3 4.3 9.4E-05 35.2 9.5 73 148-229 10-98 (256)
332 PF05430 Methyltransf_30: S-ad 88.3 0.8 1.7E-05 35.6 4.2 71 207-305 34-110 (124)
333 KOG0024 Sorbitol dehydrogenase 88.0 3.4 7.3E-05 37.5 8.4 45 144-188 165-212 (354)
334 PRK05867 short chain dehydroge 88.0 3.3 7.1E-05 36.0 8.5 74 148-230 8-97 (253)
335 cd08283 FDH_like_1 Glutathione 88.0 1.7 3.6E-05 40.7 7.0 43 147-189 183-228 (386)
336 PRK06172 short chain dehydroge 87.8 3.5 7.6E-05 35.7 8.5 73 148-229 6-94 (253)
337 PRK03659 glutathione-regulated 87.7 2.8 6E-05 41.9 8.6 84 150-255 401-496 (601)
338 KOG1201 Hydroxysteroid 17-beta 87.6 3.8 8.3E-05 36.7 8.5 75 147-231 36-126 (300)
339 KOG3924 Putative protein methy 87.3 2.2 4.7E-05 39.6 6.9 90 135-230 179-283 (419)
340 PRK07035 short chain dehydroge 87.1 4 8.6E-05 35.4 8.5 73 148-229 7-95 (252)
341 PRK08339 short chain dehydroge 87.1 14 0.0003 32.4 12.0 74 148-229 7-95 (263)
342 PRK06197 short chain dehydroge 86.7 14 0.0003 33.2 12.1 75 148-230 15-106 (306)
343 PRK07890 short chain dehydroge 86.6 5.3 0.00011 34.6 9.0 73 148-229 4-92 (258)
344 PRK07097 gluconate 5-dehydroge 86.4 6.7 0.00015 34.3 9.6 74 148-230 9-98 (265)
345 PRK07417 arogenate dehydrogena 86.4 2.6 5.7E-05 37.6 7.1 85 151-255 2-88 (279)
346 KOG1253 tRNA methyltransferase 86.2 1.3 2.9E-05 42.2 5.1 70 148-224 109-188 (525)
347 PRK05854 short chain dehydroge 86.1 5.7 0.00012 36.0 9.2 77 148-231 13-105 (313)
348 PRK05876 short chain dehydroge 85.7 6 0.00013 35.1 9.0 74 148-230 5-94 (275)
349 PRK07063 short chain dehydroge 85.4 5.2 0.00011 34.8 8.4 75 148-229 6-96 (260)
350 PRK07231 fabG 3-ketoacyl-(acyl 85.4 17 0.00037 31.2 11.6 72 148-229 4-91 (251)
351 PRK07531 bifunctional 3-hydrox 85.2 25 0.00055 34.2 13.7 165 150-320 5-195 (495)
352 TIGR02440 FadJ fatty oxidation 85.0 12 0.00027 38.1 11.7 164 150-319 305-497 (699)
353 PF03446 NAD_binding_2: NAD bi 84.8 4.7 0.0001 32.8 7.2 113 151-307 3-121 (163)
354 cd00401 AdoHcyase S-adenosyl-L 84.8 7.2 0.00016 37.0 9.3 42 147-188 200-243 (413)
355 PRK08085 gluconate 5-dehydroge 84.6 8.7 0.00019 33.3 9.4 73 148-229 8-96 (254)
356 PRK06194 hypothetical protein; 84.5 5.9 0.00013 35.0 8.4 73 149-230 6-94 (287)
357 PRK12826 3-ketoacyl-(acyl-carr 84.4 6.5 0.00014 33.7 8.5 74 148-231 5-95 (251)
358 PRK08217 fabG 3-ketoacyl-(acyl 84.3 6.3 0.00014 33.9 8.3 73 148-229 4-92 (253)
359 cd05188 MDR Medium chain reduc 84.2 3.1 6.7E-05 36.1 6.4 42 147-188 133-176 (271)
360 PRK05866 short chain dehydroge 84.2 6.8 0.00015 35.1 8.7 73 149-230 40-128 (293)
361 PRK08862 short chain dehydroge 84.0 5.8 0.00012 34.1 7.9 72 148-228 4-92 (227)
362 TIGR00561 pntA NAD(P) transhyd 84.0 4.3 9.3E-05 39.5 7.6 42 147-188 162-205 (511)
363 PRK07062 short chain dehydroge 83.9 7.6 0.00016 33.9 8.8 76 148-230 7-98 (265)
364 PRK07814 short chain dehydroge 83.8 9.8 0.00021 33.2 9.5 71 148-228 9-96 (263)
365 PRK13394 3-hydroxybutyrate deh 83.7 7.9 0.00017 33.5 8.8 74 148-231 6-96 (262)
366 PRK07677 short chain dehydroge 83.6 6.4 0.00014 34.1 8.1 70 150-228 2-87 (252)
367 PRK07454 short chain dehydroge 83.6 9.4 0.0002 32.7 9.1 72 149-230 6-94 (241)
368 PRK07523 gluconate 5-dehydroge 83.6 8 0.00017 33.5 8.8 73 148-230 9-98 (255)
369 PRK07478 short chain dehydroge 83.5 7.7 0.00017 33.6 8.6 72 149-229 6-93 (254)
370 COG0569 TrkA K+ transport syst 83.5 17 0.00036 31.4 10.4 101 151-270 2-113 (225)
371 PRK06949 short chain dehydroge 83.2 9.1 0.0002 33.1 9.0 72 148-229 8-96 (258)
372 PRK07530 3-hydroxybutyryl-CoA 83.2 33 0.00072 30.6 14.1 163 149-319 4-196 (292)
373 PRK08643 acetoin reductase; Va 83.1 8.2 0.00018 33.4 8.6 72 149-229 2-89 (256)
374 PRK08213 gluconate 5-dehydroge 83.1 7.5 0.00016 33.8 8.4 72 148-229 11-99 (259)
375 PRK07576 short chain dehydroge 83.1 7.1 0.00015 34.2 8.3 71 148-228 8-95 (264)
376 PRK06125 short chain dehydroge 83.0 12 0.00026 32.5 9.7 74 148-229 6-91 (259)
377 PRK12429 3-hydroxybutyrate deh 82.8 26 0.00055 30.2 11.7 74 149-232 4-94 (258)
378 PRK08340 glucose-1-dehydrogena 82.8 13 0.00028 32.4 9.8 69 151-229 2-86 (259)
379 PRK06935 2-deoxy-D-gluconate 3 82.6 6.6 0.00014 34.1 7.8 72 148-229 14-101 (258)
380 PRK03562 glutathione-regulated 82.6 6.3 0.00014 39.5 8.5 63 149-226 400-471 (621)
381 PRK10669 putative cation:proto 82.3 7.4 0.00016 38.5 8.8 59 150-225 418-487 (558)
382 PRK08589 short chain dehydroge 82.3 8.3 0.00018 33.9 8.4 73 148-230 5-93 (272)
383 PRK09242 tropinone reductase; 82.3 10 0.00022 32.9 8.8 75 148-229 8-98 (257)
384 PF02086 MethyltransfD12: D12 82.3 2.5 5.3E-05 37.1 4.9 56 132-190 7-62 (260)
385 COG1568 Predicted methyltransf 82.3 10 0.00022 33.8 8.3 77 140-225 144-227 (354)
386 PRK06196 oxidoreductase; Provi 82.2 26 0.00055 31.6 11.8 69 148-230 25-110 (315)
387 COG1063 Tdh Threonine dehydrog 82.2 3.6 7.9E-05 38.0 6.2 45 148-192 168-215 (350)
388 PRK09291 short chain dehydroge 82.1 9 0.00019 33.1 8.5 71 150-229 3-83 (257)
389 PF10354 DUF2431: Domain of un 81.9 11 0.00024 30.9 8.3 121 155-305 3-151 (166)
390 PRK07109 short chain dehydroge 81.7 10 0.00022 34.7 9.0 73 148-229 7-95 (334)
391 PRK06720 hypothetical protein; 81.5 15 0.00032 30.1 9.0 43 148-190 15-60 (169)
392 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.5 40 0.00088 32.9 13.3 161 149-317 5-195 (503)
393 PRK07024 short chain dehydroge 81.5 7.8 0.00017 33.7 7.9 72 150-231 3-90 (257)
394 TIGR01915 npdG NADPH-dependent 81.2 15 0.00032 31.4 9.3 95 151-256 2-100 (219)
395 PRK06113 7-alpha-hydroxysteroi 81.2 10 0.00022 32.8 8.5 73 148-229 10-98 (255)
396 PRK12823 benD 1,6-dihydroxycyc 81.0 29 0.00063 30.0 11.4 71 148-228 7-93 (260)
397 COG0863 DNA modification methy 81.0 5.1 0.00011 35.8 6.7 49 146-194 220-268 (302)
398 cd01065 NAD_bind_Shikimate_DH 81.0 13 0.00028 29.5 8.4 73 148-231 18-93 (155)
399 PF10727 Rossmann-like: Rossma 81.0 9.9 0.00022 29.6 7.3 90 148-257 9-103 (127)
400 PRK07791 short chain dehydroge 80.9 13 0.00028 33.1 9.2 74 148-230 5-103 (286)
401 TIGR03206 benzo_BadH 2-hydroxy 80.8 12 0.00027 32.0 8.9 72 149-229 3-90 (250)
402 PRK12829 short chain dehydroge 80.8 11 0.00023 32.8 8.5 70 148-229 10-96 (264)
403 PF00107 ADH_zinc_N: Zinc-bind 80.7 4.1 8.9E-05 31.2 5.2 32 158-189 1-33 (130)
404 PRK07666 fabG 3-ketoacyl-(acyl 80.7 11 0.00023 32.3 8.4 71 149-229 7-94 (239)
405 PRK07326 short chain dehydroge 80.7 11 0.00025 32.0 8.5 71 149-230 6-93 (237)
406 PRK09072 short chain dehydroge 80.5 12 0.00026 32.5 8.8 74 148-231 4-92 (263)
407 PRK08277 D-mannonate oxidoredu 80.4 12 0.00025 33.0 8.7 73 148-229 9-97 (278)
408 PRK07774 short chain dehydroge 80.3 11 0.00023 32.5 8.3 72 148-229 5-93 (250)
409 PRK08251 short chain dehydroge 80.3 13 0.00028 31.9 8.8 74 149-230 2-92 (248)
410 PRK05650 short chain dehydroge 80.0 12 0.00025 32.9 8.5 71 151-230 2-88 (270)
411 PF05050 Methyltransf_21: Meth 79.6 5.1 0.00011 32.0 5.6 36 154-189 1-42 (167)
412 PRK07102 short chain dehydroge 79.3 9.7 0.00021 32.7 7.7 70 150-228 2-85 (243)
413 PF03807 F420_oxidored: NADP o 79.1 6.8 0.00015 28.3 5.7 87 152-257 2-94 (96)
414 PF01488 Shikimate_DH: Shikima 78.6 12 0.00027 29.2 7.4 73 148-233 11-89 (135)
415 PF01210 NAD_Gly3P_dh_N: NAD-d 78.4 6.4 0.00014 31.8 5.8 101 151-259 1-104 (157)
416 PF11899 DUF3419: Protein of u 78.2 6.1 0.00013 37.0 6.3 45 147-191 34-78 (380)
417 COG0287 TyrA Prephenate dehydr 78.2 8.2 0.00018 34.6 6.8 148 149-315 3-180 (279)
418 PRK12481 2-deoxy-D-gluconate 3 78.1 13 0.00029 32.2 8.2 72 148-230 7-94 (251)
419 PRK07533 enoyl-(acyl carrier p 78.0 20 0.00043 31.2 9.3 72 148-229 9-98 (258)
420 PRK08267 short chain dehydroge 78.0 11 0.00024 32.7 7.7 70 150-230 2-88 (260)
421 PRK08303 short chain dehydroge 77.8 11 0.00025 34.0 7.9 71 148-227 7-103 (305)
422 PRK06057 short chain dehydroge 77.8 11 0.00023 32.7 7.6 68 148-229 6-89 (255)
423 PRK06200 2,3-dihydroxy-2,3-dih 77.8 11 0.00025 32.7 7.7 70 148-229 5-90 (263)
424 PRK07502 cyclohexadienyl dehyd 77.7 8.7 0.00019 34.7 7.1 87 149-254 6-96 (307)
425 PLN02668 indole-3-acetate carb 77.5 2.1 4.6E-05 40.0 3.0 29 280-308 282-311 (386)
426 KOG1596 Fibrillarin and relate 77.5 13 0.00028 32.5 7.4 92 132-242 140-244 (317)
427 PRK08268 3-hydroxy-acyl-CoA de 77.3 65 0.0014 31.5 13.3 106 149-261 7-125 (507)
428 PRK09186 flagellin modificatio 77.2 16 0.00034 31.6 8.4 73 148-227 3-91 (256)
429 PRK06181 short chain dehydroge 77.0 18 0.00038 31.5 8.7 72 150-231 2-90 (263)
430 PRK12384 sorbitol-6-phosphate 76.8 23 0.0005 30.6 9.4 74 149-229 2-91 (259)
431 PRK05993 short chain dehydroge 76.7 33 0.00071 30.2 10.4 66 149-229 4-86 (277)
432 PRK05872 short chain dehydroge 76.7 14 0.00031 33.0 8.2 74 148-231 8-97 (296)
433 PRK06182 short chain dehydroge 76.6 34 0.00074 29.9 10.5 67 149-231 3-86 (273)
434 PRK07904 short chain dehydroge 76.4 14 0.00031 32.1 7.9 74 148-229 7-97 (253)
435 PRK12939 short chain dehydroge 76.4 17 0.00037 31.1 8.4 72 148-229 6-94 (250)
436 PRK07831 short chain dehydroge 76.1 26 0.00057 30.4 9.6 75 148-229 16-107 (262)
437 PRK08226 short chain dehydroge 76.1 19 0.00041 31.2 8.7 73 148-230 5-93 (263)
438 PTZ00357 methyltransferase; Pr 76.1 7.6 0.00017 38.9 6.4 98 150-248 702-821 (1072)
439 PRK05875 short chain dehydroge 76.1 25 0.00053 30.8 9.5 74 148-228 6-95 (276)
440 COG4017 Uncharacterized protei 76.0 9 0.00019 32.1 5.9 87 148-259 44-131 (254)
441 COG5379 BtaA S-adenosylmethion 75.7 9.8 0.00021 34.1 6.4 45 148-192 63-107 (414)
442 TIGR01963 PHB_DH 3-hydroxybuty 75.6 19 0.00041 30.9 8.5 72 150-231 2-90 (255)
443 PRK08703 short chain dehydroge 74.9 21 0.00046 30.4 8.6 73 148-229 5-97 (239)
444 PRK07453 protochlorophyllide o 74.9 17 0.00037 32.9 8.3 73 148-229 5-93 (322)
445 PF00106 adh_short: short chai 74.8 12 0.00026 29.9 6.5 72 151-231 2-92 (167)
446 PLN03209 translocon at the inn 74.7 44 0.00096 33.1 11.3 81 148-229 79-169 (576)
447 PRK07074 short chain dehydroge 74.6 16 0.00035 31.6 7.8 71 149-230 2-88 (257)
448 PF13460 NAD_binding_10: NADH( 74.3 16 0.00036 29.7 7.4 126 157-303 5-140 (183)
449 KOG2198 tRNA cytosine-5-methyl 74.2 28 0.0006 32.3 9.1 56 136-191 141-204 (375)
450 PRK05786 fabG 3-ketoacyl-(acyl 73.8 22 0.00047 30.2 8.3 71 148-228 4-90 (238)
451 PF05206 TRM13: Methyltransfer 73.7 6.8 0.00015 34.6 5.0 45 136-180 5-57 (259)
452 PRK06914 short chain dehydroge 73.5 24 0.00051 31.0 8.7 74 149-229 3-91 (280)
453 PRK08993 2-deoxy-D-gluconate 3 73.3 22 0.00047 30.8 8.3 72 148-230 9-96 (253)
454 PRK05855 short chain dehydroge 73.3 19 0.00042 35.2 8.8 75 148-231 314-404 (582)
455 TIGR01832 kduD 2-deoxy-D-gluco 73.2 22 0.00048 30.4 8.3 72 148-230 4-91 (248)
456 TIGR02822 adh_fam_2 zinc-bindi 72.8 52 0.0011 29.9 11.0 44 146-189 163-208 (329)
457 PRK06138 short chain dehydroge 72.3 24 0.00052 30.2 8.3 72 148-229 4-91 (252)
458 PF11312 DUF3115: Protein of u 72.3 5.5 0.00012 36.0 4.1 108 149-256 87-240 (315)
459 TIGR00936 ahcY adenosylhomocys 72.3 21 0.00045 33.9 8.2 37 147-183 193-231 (406)
460 cd05213 NAD_bind_Glutamyl_tRNA 72.2 30 0.00066 31.4 9.2 120 147-296 176-302 (311)
461 PRK06701 short chain dehydroge 72.2 25 0.00054 31.4 8.5 73 148-229 45-134 (290)
462 PRK06849 hypothetical protein; 72.1 70 0.0015 29.9 11.9 37 148-184 3-42 (389)
463 PRK08265 short chain dehydroge 72.1 18 0.00039 31.5 7.5 70 148-229 5-90 (261)
464 PF12242 Eno-Rase_NADH_b: NAD( 72.0 14 0.00031 25.9 5.2 49 131-179 20-73 (78)
465 PRK05717 oxidoreductase; Valid 72.0 19 0.0004 31.2 7.5 72 147-230 8-95 (255)
466 PRK12743 oxidoreductase; Provi 71.6 27 0.00058 30.2 8.5 71 149-229 2-90 (256)
467 PRK08324 short chain dehydroge 71.6 45 0.00098 33.9 11.1 72 148-229 421-508 (681)
468 TIGR02415 23BDH acetoin reduct 71.6 26 0.00057 30.1 8.4 69 151-229 2-87 (254)
469 PRK05476 S-adenosyl-L-homocyst 71.5 18 0.00039 34.4 7.7 38 147-184 210-249 (425)
470 PRK07792 fabG 3-ketoacyl-(acyl 71.4 25 0.00054 31.6 8.4 73 148-229 11-99 (306)
471 PRK11880 pyrroline-5-carboxyla 71.2 28 0.00061 30.5 8.6 90 150-260 3-97 (267)
472 PRK00045 hemA glutamyl-tRNA re 71.2 33 0.00071 32.7 9.5 38 147-184 180-220 (423)
473 KOG1208 Dehydrogenases with di 71.0 34 0.00073 31.2 9.0 80 148-234 34-129 (314)
474 KOG2782 Putative SAM dependent 70.7 5 0.00011 34.3 3.3 57 132-191 30-88 (303)
475 PRK07832 short chain dehydroge 70.6 73 0.0016 27.8 11.8 72 151-230 2-89 (272)
476 PF14740 DUF4471: Domain of un 70.4 3.7 8E-05 36.8 2.6 67 217-303 220-286 (289)
477 PF02826 2-Hacid_dh_C: D-isome 70.2 24 0.00052 29.0 7.4 64 148-228 35-100 (178)
478 KOG1209 1-Acyl dihydroxyaceton 70.0 15 0.00032 31.6 5.9 32 148-179 6-41 (289)
479 PRK08278 short chain dehydroge 69.9 26 0.00056 30.8 8.0 74 148-230 5-101 (273)
480 PRK05479 ketol-acid reductoiso 69.8 20 0.00043 32.9 7.3 90 148-259 16-109 (330)
481 PRK08945 putative oxoacyl-(acy 69.6 30 0.00065 29.6 8.3 73 148-229 11-102 (247)
482 PRK06180 short chain dehydroge 69.4 23 0.00049 31.2 7.6 71 149-231 4-90 (277)
483 PRK14106 murD UDP-N-acetylmura 69.3 18 0.00039 34.5 7.4 71 148-229 4-78 (450)
484 PF07652 Flavi_DEAD: Flaviviru 69.3 56 0.0012 26.2 8.7 96 149-246 5-120 (148)
485 PF03721 UDPG_MGDP_dh_N: UDP-g 69.2 7.3 0.00016 32.5 4.1 37 151-187 2-40 (185)
486 PRK06114 short chain dehydroge 69.2 36 0.00079 29.3 8.8 74 148-231 7-98 (254)
487 cd01075 NAD_bind_Leu_Phe_Val_D 69.1 51 0.0011 27.8 9.3 43 147-189 26-70 (200)
488 PLN02253 xanthoxin dehydrogena 69.0 24 0.00053 31.0 7.7 71 148-229 17-104 (280)
489 PRK07889 enoyl-(acyl carrier p 69.0 38 0.00083 29.4 8.9 71 148-230 6-96 (256)
490 PRK06522 2-dehydropantoate 2-r 69.0 22 0.00047 31.8 7.5 93 151-256 2-99 (304)
491 COG1748 LYS9 Saccharopine dehy 68.9 49 0.0011 31.1 9.7 66 150-227 2-76 (389)
492 cd08281 liver_ADH_like1 Zinc-d 68.7 31 0.00067 31.9 8.6 43 146-188 189-234 (371)
493 PRK07825 short chain dehydroge 68.6 31 0.00068 30.1 8.3 68 149-229 5-88 (273)
494 PRK07067 sorbitol dehydrogenas 68.4 31 0.00067 29.8 8.2 68 149-229 6-90 (257)
495 PRK07984 enoyl-(acyl carrier p 68.2 36 0.00078 29.8 8.6 73 148-230 5-95 (262)
496 PLN02256 arogenate dehydrogena 68.2 30 0.00065 31.3 8.1 89 148-258 35-128 (304)
497 PF13561 adh_short_C2: Enoyl-( 68.1 15 0.00032 31.6 6.0 57 163-229 13-83 (241)
498 PRK05708 2-dehydropantoate 2-r 68.1 22 0.00047 32.2 7.3 96 150-255 3-101 (305)
499 PRK09496 trkA potassium transp 68.1 33 0.00072 32.6 8.9 60 151-226 2-72 (453)
500 TIGR02632 RhaD_aldol-ADH rhamn 68.0 29 0.00064 35.2 8.8 76 148-230 413-504 (676)
No 1
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=100.00 E-value=2.8e-42 Score=310.15 Aligned_cols=267 Identities=76% Similarity=1.188 Sum_probs=235.7
Q ss_pred CCCceeeehhhhHHHHHHhhhhccChhHHhhhhhhhcCCCChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchh
Q 020710 53 PDLSTIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSK 132 (322)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~~~~~~~~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~ 132 (322)
.++++++++|+++++++++.++++||++||+.+.++....+++.|++|||+.+|++|..+|+.++.++..+.+.+|.+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~ 128 (315)
T PLN02585 49 VDSTTFAVGGGGAVAALAAALSLTDPERRRQLQAEEVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQ 128 (315)
T ss_pred CCcceeeecchHHHHHHHHHHhccChHHHHhhhhhhhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++.+++++...+..++.+|||||||+|.++..+++.|.+|+|+|+|+.|++.++++........ .....+.|.+.|
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~---~~~~~~~f~~~D 205 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL---PPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc---ccccceEEEEcc
Confidence 99999999876422357899999999999999999999999999999999999999987542110 001123889999
Q ss_pred cccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 213 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+++++++||+|+|..+++|++++....+++.+.++.++++++.+.+.++.+.+++.+++.++++......|+++++++++
T Consensus 206 l~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 206 LESLSGKYDTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVER 285 (315)
T ss_pred hhhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHH
Confidence 98888999999999999999987777889999888888888899898888888888888888766666677889999999
Q ss_pred HHHHCCCEEEEEeeeecceehhhhhhhccC
Q 020710 293 ALQKVGWKIRKRGLITTQFYFARLVEAVPA 322 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~~~~~~f~~~~~~~~~ 322 (322)
+++++||++++.+++...|||++++|++|+
T Consensus 286 lL~~AGf~v~~~~~~~~~~y~~~l~~~~~~ 315 (315)
T PLN02585 286 ALKKAGWKVARREMTATQFYFSRLLEAVPV 315 (315)
T ss_pred HHHHCCCEEEEEEEeecceeHHhhhhhccC
Confidence 999999999999999999999999999985
No 2
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.95 E-value=7.8e-27 Score=203.32 Aligned_cols=223 Identities=52% Similarity=0.861 Sum_probs=180.1
Q ss_pred CCChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC
Q 020710 91 GGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG 170 (322)
Q Consensus 91 ~~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~ 170 (322)
...+..++.|||..+++.|...|+. ..+.......+..+....+.+++++...+..++.+|||||||+|.++..+++.+
T Consensus 7 ~~~~~~v~~~~~~~~~~~w~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~ 85 (230)
T PRK07580 7 LEHKSEVRTYFNRTGFDRWARIYSD-APVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG 85 (230)
T ss_pred hhchhhhhHHHhhhccchHHHhhCc-CchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC
Confidence 3456788999999999999999986 444555445555556667778888876333467899999999999999999999
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCC
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK 250 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~ 250 (322)
.+|+|+|+|+.|++.|+++....+..+++ .|..+|+...+++||+|++..+++|++++....+++.+.+++++
T Consensus 86 ~~v~~~D~s~~~i~~a~~~~~~~~~~~~i-------~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 86 AKVVASDISPQMVEEARERAPEAGLAGNI-------TFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCccCc-------EEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999998776553333 89999977668899999999999999988788999999998888
Q ss_pred eEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhcc
Q 020710 251 RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321 (322)
Q Consensus 251 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~~ 321 (322)
++++.+.+..........+...++........++.+.+++.+++.++||++++.......+|++.+++.+|
T Consensus 159 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
T PRK07580 159 SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSGFYFSRLLEAVR 229 (230)
T ss_pred eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccchhHHHHHHHHhh
Confidence 88888877655455555566666544333444567899999999999999999999999999999999876
No 3
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.95 E-value=1e-26 Score=201.12 Aligned_cols=217 Identities=53% Similarity=0.867 Sum_probs=180.3
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEE
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIV 173 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v 173 (322)
++.++.+|+...+..|..+|+.++.++............+...+++++.. ...++.+|||+|||+|.++..+++.+.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~v 80 (219)
T TIGR02021 2 KEQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGAIV 80 (219)
T ss_pred ccHHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCCEE
Confidence 36778899999999999999988888877666666677778888888874 12357899999999999999999998899
Q ss_pred EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEE
Q 020710 174 SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI 253 (322)
Q Consensus 174 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~i 253 (322)
+|+|+|++|++.|+++....+...+ +.|.++|+.+++++||+|++..+++|++.+....+++++.++++++++
T Consensus 81 ~gvD~s~~~i~~a~~~~~~~~~~~~-------i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 81 KAVDISEQMVQMARNRAQGRDVAGN-------VEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVI 153 (219)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCCc-------eEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999876554322 389999998888899999999999999876678899999998888999
Q ss_pred EEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhh
Q 020710 254 LSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318 (322)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~ 318 (322)
+.+.+..........+...++......+.++++.++++++++++||+++.......+|+-+.+.|
T Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~~~~~~ 218 (219)
T TIGR02021 154 FTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGFYNSMLLE 218 (219)
T ss_pred EEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccchhhHHhc
Confidence 99988776666666666666654444455677999999999999999999998888888887765
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=1.3e-22 Score=174.36 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=144.1
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG- 170 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~- 170 (322)
.+.+.|++.|+.. +..|+..+++-+.+.+..|. +.+++.+... ++.+|||||||||.++..+++..
T Consensus 8 ~k~~~v~~vF~~i-----a~~YD~~n~~~S~g~~~~Wr-----~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g 74 (238)
T COG2226 8 EKQEKVQKVFDKV-----AKKYDLMNDLMSFGLHRLWR-----RALISLLGIK---PGDKVLDVACGTGDMALLLAKSVG 74 (238)
T ss_pred ccHHHHHHHHHhh-----HHHHHhhcccccCcchHHHH-----HHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcC
Confidence 3457889999987 78888888777888887773 5555555543 68999999999999999999984
Q ss_pred -CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 171 -AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 171 -~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
.+|+|+|+|+.|++.++++..+.+..+ ++|+++|++++ |++||+|+++.+|+++++ .+..|++++|
T Consensus 75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~--------i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~R 144 (238)
T COG2226 75 TGEVVGLDISESMLEVAREKLKKKGVQN--------VEFVVGDAENLPFPDNSFDAVTISFGLRNVTD--IDKALKEMYR 144 (238)
T ss_pred CceEEEEECCHHHHHHHHHHhhccCccc--------eEEEEechhhCCCCCCccCEEEeeehhhcCCC--HHHHHHHHHH
Confidence 689999999999999999999876654 39999999998 899999999999999999 5699999999
Q ss_pred ccCCeEEEE---ECCCh------hhH----H-HHHHhhccCCCCCCccccc-------cCCHHHHHHHHHHCCCEEEE
Q 020710 247 LAEKRLILS---FAPKT------FYY----D-LLKRVGELFPGPSKATRAY-------LHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 247 ~~~~~~il~---~~~~~------~~~----~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~aGf~vv~ 303 (322)
++++||.+. +.... .+. . .+..++.+... ......| +.+.+++.++++++||+.+.
T Consensus 145 VlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~-~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 145 VLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAK-DAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeec-ChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 988877443 33211 111 1 22333433321 1111111 45899999999999999877
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.89 E-value=2.8e-23 Score=180.12 Aligned_cols=188 Identities=26% Similarity=0.423 Sum_probs=81.4
Q ss_pred ChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---
Q 020710 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--- 169 (322)
Q Consensus 93 ~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--- 169 (322)
+++.|++.||+. +..|+..+.+.+.+.+..|. +.+++.+.. .++.+|||+|||||.++..+++.
T Consensus 5 k~~~v~~~Fd~i-----a~~YD~~n~~ls~g~~~~wr-----~~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~ 71 (233)
T PF01209_consen 5 KEQYVRKMFDRI-----APRYDRMNDLLSFGQDRRWR-----RKLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGP 71 (233)
T ss_dssp ------------------------------------------SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS-
T ss_pred HHHHHHHHHHHH-----HHHhCCCccccCCcHHHHHH-----HHHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCC
Confidence 456688888866 88898888887888777774 244454443 36789999999999999999886
Q ss_pred CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 170 GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 170 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
..+|+|+|+|+.|++.|+++....+..+ ++++++|++++ +++||+|+|..+++++++ ..+.+++++|
T Consensus 72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~~--------i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~R 141 (233)
T PF01209_consen 72 NGKVVGVDISPGMLEVARKKLKREGLQN--------IEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD--RERALREMYR 141 (233)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHTT--S--------EEEEE-BTTB--S-TT-EEEEEEES-GGG-SS--HHHHHHHHHH
T ss_pred ccEEEEecCCHHHHHHHHHHHHhhCCCC--------eeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHH
Confidence 3689999999999999999998766542 49999999887 799999999999999999 5599999999
Q ss_pred ccCCeEEEEE---C-CCh-hhHH--------HHHHhhccCCCCCCccccc-------cCCHHHHHHHHHHCCCEEEEE
Q 020710 247 LAEKRLILSF---A-PKT-FYYD--------LLKRVGELFPGPSKATRAY-------LHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 247 ~~~~~~il~~---~-~~~-~~~~--------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~aGf~vv~~ 304 (322)
++++||.+.+ . |.. +... ++..++.++.+. .....| +.+.+++.++++++||+.++.
T Consensus 142 VLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 142 VLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------------------------
T ss_pred HcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 9887775433 2 222 1111 112223333221 111222 458899999999999998764
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.88 E-value=3.3e-22 Score=168.83 Aligned_cols=146 Identities=30% Similarity=0.424 Sum_probs=117.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||||||.|.++..+|+.|++|+|+|+|+++|+.|+.+..+.++.. ++.+.+.+++ .++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i---------~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNI---------DYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccc---------cchhhhHHHHHhcCCCccEE
Confidence 368999999999999999999999999999999999999999999888764 7888887776 3799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECC--ChhhHH-----HHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP--KTFYYD-----LLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+|.++|+|+++++ .+++.+.++.+++|++.+.. .++... ..+.+..+++........ +..++|+..++.+
T Consensus 129 ~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k-~irp~El~~~~~~ 205 (243)
T COG2227 129 TCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRK-FIKPAELIRWLLG 205 (243)
T ss_pred EEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHH-hcCHHHHHHhccc
Confidence 9999999999976 89999999988777666542 222111 224555666654444444 4568899999999
Q ss_pred CCCEEEEE
Q 020710 297 VGWKIRKR 304 (322)
Q Consensus 297 aGf~vv~~ 304 (322)
+||++...
T Consensus 206 ~~~~~~~~ 213 (243)
T COG2227 206 ANLKIIDR 213 (243)
T ss_pred CCceEEee
Confidence 99998874
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.88 E-value=1.1e-20 Score=173.53 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=136.0
Q ss_pred ChHHHHHHhchhhHHHHHHHhcCCCcccch-----hhhhhcCchhHHHHHHHHhhhc--CCCCCCeEEEECCCcccchHH
Q 020710 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRV-----QLDIRLGHSKTVENTMQMLNDE--GSLKGIAVCDAGCGTGSLAIP 165 (322)
Q Consensus 93 ~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~VLDvGcG~G~~~~~ 165 (322)
.++.+.+|||.. .+.|...++........ ..+.......+.+.+++.+... ...++.+|||||||+|.++..
T Consensus 57 ~~~~i~~~Yd~~-~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~ 135 (340)
T PLN02244 57 LKEGIAEFYDES-SGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRY 135 (340)
T ss_pred HHHHHHHHHccc-hHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHH
Confidence 456788999975 56777766532211111 1112222223444555554321 113578999999999999999
Q ss_pred HHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHH
Q 020710 166 LAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 166 la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
+++. +++|+|+|+|+.|++.++++....+..+++ .|+++|+.++ +++||+|++..+++|+++ ...++
T Consensus 136 La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v-------~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l 206 (340)
T PLN02244 136 LARKYGANVKGITLSPVQAARANALAAAQGLSDKV-------SFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFV 206 (340)
T ss_pred HHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHH
Confidence 9987 889999999999999999988877664433 8999998765 689999999999999998 45999
Q ss_pred HHHHhccCCeEEEEEC---CCh-------h---hHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 242 AHLASLAEKRLILSFA---PKT-------F---YYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 242 ~~l~~~~~~~~il~~~---~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++.+++++||.+.+. ... . ....+..+...+. ...+.+.+++.++++++||++++.+...
T Consensus 207 ~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~------~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 207 QELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY------LPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc------CCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 9999988776655431 110 1 1111222221111 1124578999999999999998866544
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=8.5e-20 Score=165.05 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=109.8
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.|++|+|||+|++|++.|+++....+...+ +.|+++|++++ +++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~-------i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTST-------IEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccc-------eeEEecCHHHhhhccCCCCEE
Confidence 3567999999999999999999999999999999999999988654433222 38999998775 5789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHH------HHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLL------KRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+|.++++|++++. .+++++++++++||.+.+. .+.....+. ..+..+.+. .......+++++++.+++++
T Consensus 203 i~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~-gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 203 LSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK-GTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred EEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC-CCcCccCCCCHHHHHHHHHH
Confidence 9999999999955 9999999988766655443 222111111 112222221 11112236799999999999
Q ss_pred CCCEEEEEe
Q 020710 297 VGWKIRKRG 305 (322)
Q Consensus 297 aGf~vv~~~ 305 (322)
+||++++..
T Consensus 280 aGf~i~~~~ 288 (322)
T PLN02396 280 ASVDVKEMA 288 (322)
T ss_pred cCCeEEEEe
Confidence 999998753
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=1.4e-20 Score=166.68 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=125.1
Q ss_pred ChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C-
Q 020710 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G- 170 (322)
Q Consensus 93 ~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~- 170 (322)
..+.++++|+.. +..|+...+.........|. ..+++++.. .++.+|||||||+|.++..+++. +
T Consensus 31 ~~~~v~~~f~~~-----A~~YD~~~~~~s~g~~~~~r-----~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~ 97 (261)
T PLN02233 31 CANERQALFNRI-----APVYDNLNDLLSLGQHRIWK-----RMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGS 97 (261)
T ss_pred hHHHHHHHHHHh-----hhHHHHhhhhhcCChhHHHH-----HHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCC
Confidence 456788899876 67776544333332222221 222333332 35789999999999999999876 3
Q ss_pred -CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 171 -AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 171 -~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
.+|+|+|+|++|++.|+++....... ...++.++++|++++ +++||+|++..++||++++ ..+++++.+
T Consensus 98 ~~~V~gvD~S~~ml~~A~~r~~~~~~~-----~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~--~~~l~ei~r 170 (261)
T PLN02233 98 DGKVMGLDFSSEQLAVAASRQELKAKS-----CYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDR--LKAMQEMYR 170 (261)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhhhhc-----cCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCH--HHHHHHHHH
Confidence 58999999999999998876421100 001238999998876 5789999999999999984 599999999
Q ss_pred ccCCeEEEEE---CCCh--hhHHHHH--------HhhccCCCCCC-----ccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 247 LAEKRLILSF---APKT--FYYDLLK--------RVGELFPGPSK-----ATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 247 ~~~~~~il~~---~~~~--~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
++++||.+.+ .... +...+.. .++..+..... .....+++.+++.++++++||++++...
T Consensus 171 vLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 171 VLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 8877765433 2211 1111111 11111110000 0001256999999999999999887544
No 10
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.84 E-value=5.7e-21 Score=162.25 Aligned_cols=148 Identities=28% Similarity=0.448 Sum_probs=108.3
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+.+|||||||+|.++++|++.|++|+|||+++.||+.|+++.......+. .....++|.+.|++...+.||.|+|+++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~--~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEG--AIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhcc--ccceeeehhhcchhhcccccceeeeHHH
Confidence 57899999999999999999999999999999999999999544333221 0111247888999998888999999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEEEE--CCChhhHH-----HHHHhhccCCCCCCccccc--cCCHHHHHHHHHHCCC
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLILSF--APKTFYYD-----LLKRVGELFPGPSKATRAY--LHAEADVERALQKVGW 299 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf 299 (322)
++|+.++. .+++.+.++++++|.+.+ ...++... +.+.+..+.+ +++|.+ +.+++++..++..+|+
T Consensus 168 leHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp---~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVP---KGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcC---CCCcCHHHcCCHHHHHHHHHhcCc
Confidence 99999955 999999988766654433 22221111 1122223333 333333 7799999999999999
Q ss_pred EEEE
Q 020710 300 KIRK 303 (322)
Q Consensus 300 ~vv~ 303 (322)
.+..
T Consensus 243 ~v~~ 246 (282)
T KOG1270|consen 243 QVND 246 (282)
T ss_pred chhh
Confidence 8654
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.84 E-value=7.7e-20 Score=161.72 Aligned_cols=149 Identities=26% Similarity=0.340 Sum_probs=109.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|++|++.|+++....+...++ .++++|+.++ +++||+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v-------~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNM-------QFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccce-------EEEEcCHHHHhhhcCCCCCEE
Confidence 4679999999999999999999999999999999999999998877654433 8889887654 5789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC---CChhh-HHHH----HHhhccCCCC--CCccccccCCHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---PKTFY-YDLL----KRVGELFPGP--SKATRAYLHAEADVERA 293 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~~~~~-~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 293 (322)
+|..+++|++++. .+++++.+++++||++.+. ..... ...+ ......+... ......+.++++++.++
T Consensus 117 ~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 194 (255)
T PRK11036 117 LFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQW 194 (255)
T ss_pred EehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHH
Confidence 9999999999854 8999999988777766432 22111 1110 1111111100 01112235689999999
Q ss_pred HHHCCCEEEEEe
Q 020710 294 LQKVGWKIRKRG 305 (322)
Q Consensus 294 l~~aGf~vv~~~ 305 (322)
++++||+++...
T Consensus 195 l~~aGf~~~~~~ 206 (255)
T PRK11036 195 LEEAGWQIMGKT 206 (255)
T ss_pred HHHCCCeEeeee
Confidence 999999998643
No 12
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.81 E-value=2.2e-19 Score=159.09 Aligned_cols=154 Identities=25% Similarity=0.388 Sum_probs=107.3
Q ss_pred hhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCC
Q 020710 141 LNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGK 219 (322)
Q Consensus 141 l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 219 (322)
+.+.+..++.+|||||||.|.++..++++ |++|+|+++|+++.+.+++++.+.++.+++ ++...|..+++++
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v-------~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRV-------EVRLQDYRDLPGK 127 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTE-------EEEES-GGG---S
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEEeeccccCCC
Confidence 33444568999999999999999999999 999999999999999999999999987766 8999999988889
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHH----HHHhhc-cCCCCCCccccccCCHHHH
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDL----LKRVGE-LFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (322)
||.|++.++++|+..+....+++.+.+++++||.+.+. ........ ...+.+ +||+ +++.+.+++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPg------g~lps~~~~ 201 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPG------GYLPSLSEI 201 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTT------S---BHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCC------CCCCCHHHH
Confidence 99999999999998877899999999988777755431 11111110 011222 2432 335678899
Q ss_pred HHHHHHCCCEEEEEeee
Q 020710 291 ERALQKVGWKIRKRGLI 307 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~ 307 (322)
...++++||++...+..
T Consensus 202 ~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHHTT-EEEEEEE-
T ss_pred HHHHhcCCEEEEEEEEc
Confidence 99999999999876544
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=2.8e-19 Score=146.65 Aligned_cols=137 Identities=26% Similarity=0.380 Sum_probs=99.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc---ccccCCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK---DLESLDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.|.+++|+|+|+.+++. .. . .+... +....+++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-~-----------~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-V-----------VFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-S-----------EEEEEECHTHHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-h-----------hhhhhhhhhhhccccchhhH
Confidence 468899999999999999999999999999999999987 10 0 23333 222337999999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+|+.+|+|+++ ...+++.+.++++++|++.+...............+........+..+++.+++.++++++||++++
T Consensus 83 ~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 83 ICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999998 5599999999987777665432221111112222222211112455678999999999999999986
No 14
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.5e-18 Score=151.83 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=121.7
Q ss_pred hhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCc
Q 020710 142 NDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKY 220 (322)
Q Consensus 142 ~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~f 220 (322)
.+.++.++.+|||||||.|.++++++++ |.+|+|+++|+++.+.+++++...++.+++ +++..|..++.+.|
T Consensus 66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v-------~v~l~d~rd~~e~f 138 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNV-------EVRLQDYRDFEEPF 138 (283)
T ss_pred HhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCccc-------EEEecccccccccc
Confidence 3334568999999999999999999998 899999999999999999999999988655 99999999998889
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE---C-CChhhHHHHHHhh-ccCCCCCCccccccCCHHHHHHHHH
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF---A-PKTFYYDLLKRVG-ELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
|-|++.++++|+.......+++.+.++++++|.+.+ . +..........+. .+|| .+++.+..++.+..+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFP------gG~lPs~~~i~~~~~ 212 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFP------GGELPSISEILELAS 212 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCC------CCcCCCHHHHHHHHH
Confidence 999999999999998899999999998866664432 1 2211112222332 2343 345667899999999
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
++||.+...+.
T Consensus 213 ~~~~~v~~~~~ 223 (283)
T COG2230 213 EAGFVVLDVES 223 (283)
T ss_pred hcCcEEehHhh
Confidence 99999987543
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=4.8e-19 Score=156.32 Aligned_cols=190 Identities=19% Similarity=0.302 Sum_probs=131.0
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA 171 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~ 171 (322)
.+++.++..|++. ...|+.. ... +....+.+++.+... ++.+|||+|||+|.++..+++.+.
T Consensus 4 ~~k~~i~~~F~~a-----a~~Y~~~---~~~-------q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~ 65 (251)
T PRK10258 4 VNKQAIAAAFGRA-----AAHYEQH---AEL-------QRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGS 65 (251)
T ss_pred cCHHHHHHHHHHH-----HHhHhHH---HHH-------HHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCC
Confidence 4567788888876 4455432 111 122335566666532 467999999999999999998899
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
+|+++|+|+.|++.++++... +.++++|++.+ +++||+|+++.++++.++ ...+++++.+++
T Consensus 66 ~v~~~D~s~~~l~~a~~~~~~-------------~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~L 130 (251)
T PRK10258 66 QVTALDLSPPMLAQARQKDAA-------------DHYLAGDIESLPLATATFDLAWSNLAVQWCGN--LSTALRELYRVV 130 (251)
T ss_pred eEEEEECCHHHHHHHHhhCCC-------------CCEEEcCcccCcCCCCcEEEEEECchhhhcCC--HHHHHHHHHHHc
Confidence 999999999999999877532 17888998775 578999999999999888 559999999988
Q ss_pred CCeEEEEEC---CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhcc
Q 020710 249 EKRLILSFA---PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321 (322)
Q Consensus 249 ~~~~il~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~~ 321 (322)
++||++.+. ..++ ..+....... .. ......+.+.+++..++.+.|++. +.....++|.+..+.++
T Consensus 131 k~gG~l~~~~~~~~~~-~el~~~~~~~-~~--~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~f~~~~~~l~ 199 (251)
T PRK10258 131 RPGGVVAFTTLVQGSL-PELHQAWQAV-DE--RPHANRFLPPDAIEQALNGWRYQH---HIQPITLWFDDALSAMR 199 (251)
T ss_pred CCCeEEEEEeCCCCch-HHHHHHHHHh-cc--CCccccCCCHHHHHHHHHhCCcee---eeeEEEEECCCHHHHHH
Confidence 877766543 2222 2222211111 11 111222568999999999888765 33445677877776553
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=150.36 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=122.7
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G 170 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~ 170 (322)
.+.+.+++.|+.. +..|+....+.....+..|. ..+++.+.... .++.+|||||||||.++..+++. +
T Consensus 6 ~~~~~v~~~f~~i-----A~~YD~~n~~~s~g~~~~wr-----~~~~~~l~~~~-~~~~~VLDlGcGtG~~~~~l~~~~~ 74 (226)
T PRK05785 6 ATWEELQEAYNKI-----PKAYDRANRFISFNQDVRWR-----AELVKTILKYC-GRPKKVLDVAAGKGELSYHFKKVFK 74 (226)
T ss_pred ccHHHHHHHHHhh-----hHHHHHhhhhccCCCcHHHH-----HHHHHHHHHhc-CCCCeEEEEcCCCCHHHHHHHHhcC
Confidence 4556778888865 77787655544444444331 33444443321 23679999999999999999988 6
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhc
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
.+|+|+|+|++|++.|+++. .++++|++.+ +++||+|++..+++|+++ ..+.+++++++
T Consensus 75 ~~v~gvD~S~~Ml~~a~~~~----------------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~Rv 136 (226)
T PRK05785 75 YYVVALDYAENMLKMNLVAD----------------DKVVGSFEALPFRDKSFDVVMSSFALHASDN--IEKVIAEFTRV 136 (226)
T ss_pred CEEEEECCCHHHHHHHHhcc----------------ceEEechhhCCCCCCCEEEEEecChhhccCC--HHHHHHHHHHH
Confidence 89999999999999997641 4667787665 689999999999999998 45999999998
Q ss_pred cCCeE-EEEECCC-hhh-H--------HHHHHhhccCCCCCCccccc-------cCCHHHHHHHHHHCCCEEEE
Q 020710 248 AEKRL-ILSFAPK-TFY-Y--------DLLKRVGELFPGPSKATRAY-------LHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 248 ~~~~~-il~~~~~-~~~-~--------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~aGf~vv~ 303 (322)
+++.+ ++.+... ... . ..+..++.++.+. .....| +.+.+++.++++++| ..++
T Consensus 137 Lkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~-~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~ 208 (226)
T PRK05785 137 SRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAK-CRDYKYIYYIYERLPTNSFHREIFEKYA-DIKV 208 (226)
T ss_pred hcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceE
Confidence 87654 5555432 111 1 1223344444321 111212 458899999999974 4333
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.79 E-value=3.2e-18 Score=149.17 Aligned_cols=192 Identities=21% Similarity=0.250 Sum_probs=125.5
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---C
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---G 170 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~ 170 (322)
.+.++++|+.. ...|+.............| .+.++..+.. .++.+|||+|||+|.++..+++. +
T Consensus 4 ~~~~~~~f~~~-----a~~yd~~~~~~~~~~~~~~-----~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~ 70 (231)
T TIGR02752 4 EERVHKVFEKI-----YKKYDRMNSVISFQRHKKW-----RKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPE 70 (231)
T ss_pred HHHHHHHHHHh-----hhHHhHHHHHhcCCchHHH-----HHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCC
Confidence 45677888875 4445443322222222222 1344454443 35789999999999999999876 3
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhc
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
.+|+|+|+|+.|++.++++....+.. + ++++.+|+.+. +++||+|++..+++|+++ ..++++++.++
T Consensus 71 ~~v~gvD~s~~~~~~a~~~~~~~~~~-~-------v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~ 140 (231)
T TIGR02752 71 GHVIGLDFSENMLSVGRQKVKDAGLH-N-------VELVHGNAMELPFDDNSFDYVTIGFGLRNVPD--YMQVLREMYRV 140 (231)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCC-c-------eEEEEechhcCCCCCCCccEEEEecccccCCC--HHHHHHHHHHH
Confidence 68999999999999999988765442 2 38888888764 578999999999999988 45899999998
Q ss_pred cCCeEEEEEC-C---Chh-hHHH--------HHHhhccCCCCC------CccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 248 AEKRLILSFA-P---KTF-YYDL--------LKRVGELFPGPS------KATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 248 ~~~~~il~~~-~---~~~-~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++||.+.+. . ... +... .......+.... ......+++.+++.++++++||++++.....
T Consensus 141 Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 141 VKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred cCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 8777655432 1 111 1110 011111111000 0011224688999999999999998765554
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.79 E-value=4.6e-18 Score=150.75 Aligned_cols=184 Identities=15% Similarity=0.220 Sum_probs=123.5
Q ss_pred HhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeC
Q 020710 100 YFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDI 178 (322)
Q Consensus 100 ~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~ 178 (322)
.|+..+-.+|...++...- .. +-......+++.+.. .++.+|||||||+|..+..+++. +++|+|+|+
T Consensus 15 ~y~~~~~~~~e~~~g~~~~-~~-------gg~~~~~~~l~~l~l---~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~ 83 (263)
T PTZ00098 15 QYSDEGIKAYEFIFGEDYI-SS-------GGIEATTKILSDIEL---NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDI 83 (263)
T ss_pred ccccccchhHHHHhCCCCC-CC-------CchHHHHHHHHhCCC---CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEEC
Confidence 3555556677777763211 11 111123455555543 46789999999999999999875 789999999
Q ss_pred CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 179 SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 179 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|+.|++.++++.... .+ +.|.++|+... +++||+|++..+++|++......+++++++++++||.+.
T Consensus 84 s~~~~~~a~~~~~~~---~~-------i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 84 CEKMVNIAKLRNSDK---NK-------IEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred CHHHHHHHHHHcCcC---Cc-------eEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999999886531 12 38899998654 578999999999999985457799999999987777665
Q ss_pred ECCChh--hHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 256 FAPKTF--YYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 256 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+..... ...+.......+.. ....+.+.+++.++|+++||+++.....+
T Consensus 154 i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 154 ITDYCADKIENWDEEFKAYIKK----RKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred EEEeccccccCcHHHHHHHHHh----cCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 432110 00011111111100 01124588999999999999998865543
No 19
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=3.1e-18 Score=151.51 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=107.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++ + ++|+++|
T Consensus 19 ~~ll~~l~~---~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-----------~~~~~~d 80 (255)
T PRK14103 19 YDLLARVGA---ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-----------VDARTGD 80 (255)
T ss_pred HHHHHhCCC---CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-----------CcEEEcC
Confidence 455555553 35789999999999999999987 67999999999999999763 1 2889999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CCh---hhHHHHHHhh--ccCC----CCCCcc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKT---FYYDLLKRVG--ELFP----GPSKAT 280 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~---~~~~~~~~~~--~~~~----~~~~~~ 280 (322)
++++ +++||+|+|..++||+++. ..+++++++.+++||.+.+. +.. ........+. ..|. ......
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 158 (255)
T PRK14103 81 VRDWKPKPDTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRV 158 (255)
T ss_pred hhhCCCCCCceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhccccccc
Confidence 8765 5799999999999999984 59999999988777766542 221 1112222211 1121 110111
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
...+.+.+++.++|+++||++...+
T Consensus 159 ~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred CcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 2335689999999999999865433
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.77 E-value=4e-18 Score=144.08 Aligned_cols=189 Identities=18% Similarity=0.272 Sum_probs=136.4
Q ss_pred HHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-----
Q 020710 95 EVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----- 169 (322)
Q Consensus 95 ~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----- 169 (322)
.-|.+.|++. +..|+.-++.-......-| -+..+..+... ++.++||++||||..++.+.++
T Consensus 60 ~~V~~vF~~v-----A~~YD~mND~mSlGiHRlW-----Kd~~v~~L~p~---~~m~~lDvaGGTGDiaFril~~v~s~~ 126 (296)
T KOG1540|consen 60 RLVHHVFESV-----AKKYDIMNDAMSLGIHRLW-----KDMFVSKLGPG---KGMKVLDVAGGTGDIAFRILRHVKSQF 126 (296)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHhhcchhHHH-----HHHhhhccCCC---CCCeEEEecCCcchhHHHHHHhhcccc
Confidence 4466777765 6667766665555544434 25555666554 6799999999999999999876
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHH
Q 020710 170 ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAH 243 (322)
Q Consensus 170 ---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~ 243 (322)
+.+|+.+|||++|++.++++..+.++... ....|+++|++++ +.+||..++.+.+.++++ .++.+++
T Consensus 127 ~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-----~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--~~k~l~E 199 (296)
T KOG1540|consen 127 GDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-----SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--IQKALRE 199 (296)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-----CceEEEeCCcccCCCCCCcceeEEEecceecCCC--HHHHHHH
Confidence 26799999999999999999977655432 1138999999998 799999999999999999 5599999
Q ss_pred HHhccCCeEEEEEC---CCh----------hhHHHHHHhhccCCCCCCcc------ccccCCHHHHHHHHHHCCCEEEE
Q 020710 244 LASLAEKRLILSFA---PKT----------FYYDLLKRVGELFPGPSKAT------RAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 244 l~~~~~~~~il~~~---~~~----------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
.+|++++|+.+.|. .-. +..+.+..+++++.+..+.. -..+.+.++++.+++++||..+.
T Consensus 200 AYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 99999888866542 111 11223344555544322110 01145889999999999999886
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=7.5e-18 Score=143.14 Aligned_cols=148 Identities=24% Similarity=0.335 Sum_probs=110.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||+|||+|.++..|+++|++|+|+|+|+.|++.++++....+..+ +++.+.|+.
T Consensus 20 ~~l~~~l~~~---~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~--------v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVKVV---KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN--------LHTAVVDLN 88 (197)
T ss_pred HHHHHhcccC---CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------ceEEecChh
Confidence 3455555543 56899999999999999999999999999999999999999887765532 378888887
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+. +++||+|+|+.++||++++....+++.+.+++++||.+ .+..... +-.+. .....+.++.+++.
T Consensus 89 ~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~---------~~~~~--~~~~~~~~~~~el~ 157 (197)
T PRK11207 89 NLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT---------ADYPC--TVGFPFAFKEGELR 157 (197)
T ss_pred hCCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC---------CCCCC--CCCCCCccCHHHHH
Confidence 64 57899999999999988766889999999988777753 2211000 00000 01112456889999
Q ss_pred HHHHHCCCEEEEEee
Q 020710 292 RALQKVGWKIRKRGL 306 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~ 306 (322)
++++ ||++++.+.
T Consensus 158 ~~~~--~~~~~~~~~ 170 (197)
T PRK11207 158 RYYE--GWEMVKYNE 170 (197)
T ss_pred HHhC--CCeEEEeeC
Confidence 9997 999888643
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.76 E-value=4.7e-17 Score=147.73 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=104.2
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
++.+|||||||+|.++..+++. +.+|+++|+|+.|++.++++.... + ++++.+|++++ +++||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~-------i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----E-------CKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----C-------CeEEeccHHhCCCCCCceeE
Confidence 4679999999999999888875 568999999999999999875421 1 27899998765 578999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hhccCCCCCCccccccCCHHHHHHHHHHCCCEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VGELFPGPSKATRAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 301 (322)
|++..+++|++++. .+++++.+++++||.+.+........+..+ ....+ ..+.+.+++.++++++||+.
T Consensus 182 VIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~--------~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 182 YVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVW--------MLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred EEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhh--------ccCCCHHHHHHHHHHCCCeE
Confidence 99999999999854 899999998877765543211110111111 11111 11347899999999999999
Q ss_pred EEEeeeec
Q 020710 302 RKRGLITT 309 (322)
Q Consensus 302 v~~~~~~~ 309 (322)
++...+..
T Consensus 252 V~i~~i~~ 259 (340)
T PLN02490 252 VKLKRIGP 259 (340)
T ss_pred EEEEEcCh
Confidence 98766543
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.75 E-value=1.3e-17 Score=150.23 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=104.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
..++..+.. .++.+|||||||+|.++..++..|+ .|+|+|+|+.|+..++..........+ +.+...++
T Consensus 111 ~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~-------v~~~~~~i 180 (314)
T TIGR00452 111 DRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKR-------AILEPLGI 180 (314)
T ss_pred HHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCC-------eEEEECCH
Confidence 445555433 3678999999999999999988876 699999999999765432221111111 26777777
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHH--HHhhccCCCCCCccccccC
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLL--KRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 285 (322)
+++ ...||+|+|..+++|++++. .+++++++.+++||.+.+. ......... ...... . ...+++
T Consensus 181 e~lp~~~~FD~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~-----~-nv~flp 252 (314)
T TIGR00452 181 EQLHELYAFDTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKM-----K-NVYFIP 252 (314)
T ss_pred HHCCCCCCcCEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhc-----c-ccccCC
Confidence 766 46899999999999999854 8999999988766655432 111100000 000000 0 011245
Q ss_pred CHHHHHHHHHHCCCEEEEEeeee
Q 020710 286 AEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+.+++.++++++||+.+++....
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEecc
Confidence 88999999999999999865443
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=1.8e-17 Score=150.78 Aligned_cols=158 Identities=19% Similarity=0.220 Sum_probs=106.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
..++..+.. .++.+|||||||+|.++..+++.|. .|+|+|+|+.|+..++......+... ++.|+.+|+
T Consensus 112 ~~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~-------~i~~~~~d~ 181 (322)
T PRK15068 112 DRVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQ-------RAHLLPLGI 181 (322)
T ss_pred HHHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCC-------CeEEEeCCH
Confidence 455555543 3578999999999999999999875 59999999999876544332211111 238898888
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
+++ +++||+|+|..+++|..++. .+++++++.+++||.+.+. +......... ...+... . ...+..+.
T Consensus 182 e~lp~~~~FD~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p--~~~y~~~-~-~~~~lps~ 255 (322)
T PRK15068 182 EQLPALKAFDTVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLVP--GDRYAKM-R-NVYFIPSV 255 (322)
T ss_pred HHCCCcCCcCEEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccCc--hhHHhcC-c-cceeCCCH
Confidence 776 68899999999999998854 8999999988777655442 1110000000 0000000 0 01124588
Q ss_pred HHHHHHHHHCCCEEEEEeeee
Q 020710 288 ADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++.++|+++||++++.....
T Consensus 256 ~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 256 PALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHHHcCCceEEEEeCC
Confidence 999999999999998865443
No 25
>PRK06202 hypothetical protein; Provisional
Probab=99.74 E-value=3.1e-17 Score=143.12 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=101.5
Q ss_pred CCCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~ 218 (322)
++.+|||||||+|.++..|++. | .+|+|+|+|+.|++.|+++....+. .+.+.+...+ ++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~~~~~~~l~~~~~ 128 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-----------TFRQAVSDELVAEGE 128 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-----------eEEEEecccccccCC
Confidence 5679999999999999888752 3 5899999999999999887643322 5555544333 67
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhc------cCCCCCCccccccCCHHHHH
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGE------LFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 291 (322)
+||+|+|+.++||+++++...+++++.+++++..++.. ......+........ +...........+++.+++.
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 99999999999999987777899999998875444432 222222211111111 11111111122356999999
Q ss_pred HHHHHCCCEEEEEeee
Q 020710 292 RALQKVGWKIRKRGLI 307 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~~ 307 (322)
+++++ ||++......
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998876544
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.74 E-value=5.7e-17 Score=137.49 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=108.4
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||+|||+|.++..++++|++|+|+|+|+.|++.++++....++.. .+.+.|+.
T Consensus 20 ~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v---------~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVKTV---APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPL---------RTDAYDIN 87 (195)
T ss_pred HHHHHHhccC---CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCc---------eeEeccch
Confidence 4555555543 46799999999999999999999999999999999999998887665432 67777765
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.. +++||+|+++.+++|++.+....+++.+++++++||++.+.... .. ...+ ......+.++++++.+
T Consensus 88 ~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~------~~--~~~~--~~~~~~~~~~~~el~~ 157 (195)
T TIGR00477 88 AAALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM------DT--ADYP--CHMPFSFTFKEDELRQ 157 (195)
T ss_pred hccccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec------cc--CCCC--CCCCcCccCCHHHHHH
Confidence 43 57899999999999998766789999999988777753321100 00 0011 0112234678999999
Q ss_pred HHHHCCCEEEEEee
Q 020710 293 ALQKVGWKIRKRGL 306 (322)
Q Consensus 293 ~l~~aGf~vv~~~~ 306 (322)
++. +|+++....
T Consensus 158 ~f~--~~~~~~~~e 169 (195)
T TIGR00477 158 YYA--DWELLKYNE 169 (195)
T ss_pred HhC--CCeEEEeec
Confidence 996 599888653
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=1.8e-17 Score=145.76 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=111.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD 221 (322)
.++.+|||||||+|..+..+++. +++|+|+|+|+.|++.|++++...+...++ +++++|+.+. .+.+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV-------DVIEGDIRDIAIENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-------EEEeCChhhCCCCCCC
Confidence 35789999999999999888762 679999999999999999999876654433 8999998876 35699
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHH-HHHHhhccC--CCCCC---------c-cccc
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYD-LLKRVGELF--PGPSK---------A-TRAY 283 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~-~~~~~~~~~--~~~~~---------~-~~~~ 283 (322)
+|+++.++||++++....+++++++.+++||.+.+.. ...... +......+. .+... . ....
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~ 207 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVML 207 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 9999999999987667799999999887777654421 111111 111000000 01000 0 0111
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 284 LHAEADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
..+.++..++|+++||+.+.+. ...+.|..+
T Consensus 208 ~~~~~~~~~~L~~aGF~~v~~~--~~~~~f~~~ 238 (247)
T PRK15451 208 TDSVETHKARLHKAGFEHSELW--FQCFNFGSL 238 (247)
T ss_pred cCCHHHHHHHHHHcCchhHHHH--HHHHhHHHH
Confidence 2489999999999999976543 334444443
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.73 E-value=3.3e-17 Score=143.55 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=107.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD 221 (322)
.++.+|||||||+|.++..+++. +++++|+|+|+.|++.|++++...+...++ +++++|+.+. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPV-------EILCNDIRHVEIKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-------EEEECChhhCCCCCCC
Confidence 35679999999999999999874 678999999999999999998765433333 8999999876 35699
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC-----hhhHHHHHHhhccC---CCCCC----------ccccc
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK-----TFYYDLLKRVGELF---PGPSK----------ATRAY 283 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~-----~~~~~~~~~~~~~~---~~~~~----------~~~~~ 283 (322)
+|++..++||++++....+++++.+.+++||.+.+... ......+..+...+ .+... .....
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMR 204 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence 99999999999876677999999998877776655321 11111111111000 00000 01122
Q ss_pred cCCHHHHHHHHHHCCCEEEEE
Q 020710 284 LHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+.++++++++++||+.+++
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHH
Confidence 458999999999999996653
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.73 E-value=1.2e-16 Score=153.78 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=109.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+.+++.+.. .++.+|||||||+|..+..+++. +++|+|+|+|+.|++.|+++..... .+ +.|.++|+
T Consensus 256 e~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~-------v~~~~~d~ 323 (475)
T PLN02336 256 KEFVDKLDL---KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CS-------VEFEVADC 323 (475)
T ss_pred HHHHHhcCC---CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--Cc-------eEEEEcCc
Confidence 445554432 35779999999999999999876 7899999999999999988765322 22 38999998
Q ss_pred ccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHHHHHHhhccCCCCCCccccccC
Q 020710 214 ESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
... +++||+|+|..+++|++++. .+++++++++++||.+.+.. ......+...+... ...++
T Consensus 324 ~~~~~~~~~fD~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------g~~~~ 393 (475)
T PLN02336 324 TKKTYPDNSFDVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR--------GYDLH 393 (475)
T ss_pred ccCCCCCCCEEEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc--------CCCCC
Confidence 764 57899999999999999854 99999999887777665431 11111111111111 11245
Q ss_pred CHHHHHHHHHHCCCEEEEEee
Q 020710 286 AEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~ 306 (322)
+.+++.++++++||+++..+.
T Consensus 394 ~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 394 DVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CHHHHHHHHHHCCCeeeeeec
Confidence 789999999999999987654
No 30
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=1.1e-16 Score=133.35 Aligned_cols=148 Identities=23% Similarity=0.276 Sum_probs=104.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... +++++||+|||.|+++.+|+++|+.|+++|+|+..++.+++.+.+.++.. +..+.|+.
T Consensus 20 s~v~~a~~~~---~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i---------~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVPLL---KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDI---------RTRVADLN 87 (192)
T ss_dssp HHHHHHCTTS----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TE---------EEEE-BGC
T ss_pred HHHHHHHhhc---CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCcee---------EEEEecch
Confidence 3455555443 57899999999999999999999999999999999999998888777764 88889987
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+. ++.||+|++..+++|++.+....+++.+.+.+++||++.+...... ..++. .....+.+.+.|+.+
T Consensus 88 ~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~--------~d~p~--~~~~~f~~~~~EL~~ 157 (192)
T PF03848_consen 88 DFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET--------PDYPC--PSPFPFLLKPGELRE 157 (192)
T ss_dssp CBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB----------SSS----SS--S--B-TTHHHH
T ss_pred hccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc--------CCCCC--CCCCCcccCHHHHHH
Confidence 65 6889999999999999988889999999988777765543211100 01111 112234456778888
Q ss_pred HHHHCCCEEEEEee
Q 020710 293 ALQKVGWKIRKRGL 306 (322)
Q Consensus 293 ~l~~aGf~vv~~~~ 306 (322)
.+. ||++++.+.
T Consensus 158 ~y~--dW~il~y~E 169 (192)
T PF03848_consen 158 YYA--DWEILKYNE 169 (192)
T ss_dssp HTT--TSEEEEEEE
T ss_pred HhC--CCeEEEEEc
Confidence 876 799987433
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.72 E-value=1.1e-17 Score=136.22 Aligned_cols=100 Identities=35% Similarity=0.535 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcccchHHHHh-c--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC----CCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK-Q--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD----GKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~f 220 (322)
++.+|||+|||+|.++..+++ . +.+++|+|+|+.|++.|++++...+..+ ++|.++|+.+++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n--------i~~~~~d~~~l~~~~~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN--------IEFIQGDIEDLPQELEEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT--------EEEEESBTTCGCGCSSTTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc--------cceEEeehhccccccCCCe
Confidence 578999999999999999994 4 6789999999999999999988877652 399999998875 689
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|++..+++|+++.. .+++.+.+++++++++.+.
T Consensus 75 D~I~~~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPE--KVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp EEEEEESTGGGTSHHH--HHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHH--HHHHHHHHHcCCCcEEEEE
Confidence 9999999999999854 9999999988777766543
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.72 E-value=1.6e-16 Score=138.90 Aligned_cols=194 Identities=25% Similarity=0.300 Sum_probs=124.2
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG- 170 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~- 170 (322)
.+++.++++|+.. +..|+........ .........++..+... ++.+|||+|||+|.++..+++.+
T Consensus 8 ~~~~~~~~~~~~~-----~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~vldiG~G~G~~~~~l~~~~~ 74 (239)
T PRK00216 8 EKQEKVAEMFDSI-----APKYDLMNDLLSF-----GLHRVWRRKTIKWLGVR---PGDKVLDLACGTGDLAIALAKAVG 74 (239)
T ss_pred cchHHHHHHHHHh-----hhhHHHHHHHHhc-----CCcHHHHHHHHHHhCCC---CCCeEEEeCCCCCHHHHHHHHHcC
Confidence 3456777888765 4444422111000 01112234445554432 56899999999999999998874
Q ss_pred --CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHH
Q 020710 171 --AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 171 --~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
.+++++|+++.+++.+++++...+...+ +.+..+|+.+. ++.||+|++..+++|+++ ...+++.+.
T Consensus 75 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~--~~~~l~~~~ 145 (239)
T PRK00216 75 KTGEVVGLDFSEGMLAVGREKLRDLGLSGN-------VEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD--IDKALREMY 145 (239)
T ss_pred CCCeEEEEeCCHHHHHHHHHhhcccccccC-------eEEEecccccCCCCCCCccEEEEecccccCCC--HHHHHHHHH
Confidence 7899999999999999998865433332 28888888765 578999999999999988 559999999
Q ss_pred hccCCeEEEEEC----CChh-hHH--------HHHHhhccCCCCCCcc------ccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 246 SLAEKRLILSFA----PKTF-YYD--------LLKRVGELFPGPSKAT------RAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 246 ~~~~~~~il~~~----~~~~-~~~--------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
++++++|++.+. +... ... .....+..+....... ...+++.+++.++++++||++++...
T Consensus 146 ~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 146 RVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 987666644331 1110 111 1111111111100000 02245788999999999999888665
Q ss_pred e
Q 020710 307 I 307 (322)
Q Consensus 307 ~ 307 (322)
.
T Consensus 226 ~ 226 (239)
T PRK00216 226 L 226 (239)
T ss_pred e
Confidence 4
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.71 E-value=8e-17 Score=124.10 Aligned_cols=103 Identities=33% Similarity=0.415 Sum_probs=85.2
Q ss_pred CCCeEEEECCCcccchHHHHh--cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc-ccC--CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL-ESL--DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~--~~~fD~ 222 (322)
|+.+|||||||+|.++..+++ .+++|+|+|+|+.|++.++++....+...++ .|+++|+ ... .+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-------~~~~~d~~~~~~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRI-------TFVQGDAEFDPDFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTE-------EEEESCCHGGTTTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCe-------EEEECccccCcccCCCCCE
Confidence 478999999999999999999 5999999999999999999999666655544 9999999 332 678999
Q ss_pred EEEcc-cccccCc-chHHHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLD-VLIHYPQ-SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~-~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|++.. +++++.. ++...+++++++.+++|+++.+.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999 5655543 45678999999988888877653
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=2.2e-16 Score=139.98 Aligned_cols=151 Identities=24% Similarity=0.282 Sum_probs=105.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++... +.|+.+|
T Consensus 21 ~~ll~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~-------------~~~~~~d 84 (258)
T PRK01683 21 RDLLARVPL---ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD-------------CQFVEAD 84 (258)
T ss_pred HHHHhhCCC---cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC-------------CeEEECc
Confidence 455555543 35789999999999999999987 57899999999999999877521 2788999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChh---hHHHHHHhhc--cCCC---CCCccc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTF---YYDLLKRVGE--LFPG---PSKATR 281 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~---~~~~~~~~~~--~~~~---~~~~~~ 281 (322)
+..+ +++||+|+++.+++|+++. ..+++++.+++++||.+.+ .+... .......+.. .|.. ......
T Consensus 85 ~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 85 IASWQPPQALDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred hhccCCCCCccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccC
Confidence 8765 5799999999999999984 4999999998877665544 33221 1111111110 0110 001112
Q ss_pred cccCCHHHHHHHHHHCCCEEEE
Q 020710 282 AYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
..+.+.+++.+++.++|+.+..
T Consensus 163 ~~~~~~~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 163 APLPPPHAYYDALAPAACRVDI 184 (258)
T ss_pred cCCCCHHHHHHHHHhCCCceee
Confidence 3446788999999999987644
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.71 E-value=1.7e-16 Score=137.67 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=108.8
Q ss_pred CeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++|||||||+|.++..+++. +++|+|+|+|+.+++.+++++...+...++ .+...|+... .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i-------~~~~~d~~~~~~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRI-------RIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcce-------EEEecccccCCCCCCCCEeeh
Confidence 37999999999999999887 478999999999999999999887766544 8899988543 578999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
..+++|+++ ...+++.++++++++|.+.+.... ... .-.........++.+.+++.+++.++||++++..
T Consensus 74 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~--~~~------~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 74 FEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFI--ANL------LSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcc--ccc------CccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 999999988 559999999988777766543211 000 0000111223456789999999999999998866
Q ss_pred eee
Q 020710 306 LIT 308 (322)
Q Consensus 306 ~~~ 308 (322)
...
T Consensus 144 ~~~ 146 (224)
T smart00828 144 DAS 146 (224)
T ss_pred ECc
Confidence 543
No 36
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.70 E-value=5.1e-16 Score=127.74 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=114.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+.+.+++. ++.+|||+|||.|.++.+|.+. +++..|+|++++.+..+.++ ++ .++++|+
T Consensus 5 ~~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----Gv-----------~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----GV-----------SVIQGDL 64 (193)
T ss_pred HHHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----CC-----------CEEECCH
Confidence 44556655 4799999999999999999885 88999999999988777554 22 7899998
Q ss_pred ccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh-hccC------C-CCCCcc
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV-GELF------P-GPSKAT 280 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~-~~~~------~-~~~~~~ 280 (322)
++- +++||.|+++.+|+++..++ .+|+++.|+ ++.+|++|..-..+...+.-+ .... + ..++.+
T Consensus 65 d~gL~~f~d~sFD~VIlsqtLQ~~~~P~--~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTLQAVRRPD--EVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHhHhhCCCCCccEEehHhHHHhHhHHH--HHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 663 89999999999999999866 999999886 446777775544433333322 1111 1 122334
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeeecce
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLITTQF 311 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~ 311 (322)
+..+.+..|++++.++.|++|++........
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 4446699999999999999999977665443
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.69 E-value=3.8e-16 Score=140.40 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=104.9
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||+|||+|.++.++++.|.+|+|+|+|+.|++.++++....++.. .+...|+... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v---------~~~~~D~~~~~~~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNI---------RTGLYDINSASIQEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCce---------EEEEechhcccccCCccEEEE
Confidence 35699999999999999999999999999999999999999987766532 7788887654 789999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+++|++++....+++.+.+.+++||++. +..... . ..+ ......+.++++++.+++. +|+++..
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~-~--------~~~--~~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT-E--------DYP--CPMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc-c--------cCC--CCCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 999999987778899999999887766533 221110 0 000 0122345578999999986 4999886
Q ss_pred ee
Q 020710 305 GL 306 (322)
Q Consensus 305 ~~ 306 (322)
..
T Consensus 258 ~e 259 (287)
T PRK12335 258 NE 259 (287)
T ss_pred ec
Confidence 43
No 38
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.69 E-value=1e-15 Score=131.06 Aligned_cols=143 Identities=21% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC------C-CCCCCCceEEcccccCC---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG------G-EAPVMPKFEVKDLESLD--- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~------~-~~~~~~~~~~~d~~~~~--- 217 (322)
++.+|||+|||.|..+..|+++|++|+|+|+|+.+++.+.+.. ++.... + .....++++++|+.+++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4679999999999999999999999999999999999864322 111000 0 00123489999998763
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+.||.|+...+++|++.+....+++.+.+++++|+.+.+..-.. . . . .. ....+..+.+++++++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~--~---~-~-~~-----~gpp~~~~~~eL~~~f~~ 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY--D---Q-S-EM-----AGPPFSVSPAEVEALYGG 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc--C---C-C-CC-----CCcCCCCCHHHHHHHhcC
Confidence 57999999999999998888899999999887776432211000 0 0 0 00 112245689999998863
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+|++...+.
T Consensus 179 -~~~i~~~~~ 187 (213)
T TIGR03840 179 -HYEIELLES 187 (213)
T ss_pred -CceEEEEee
Confidence 566665443
No 39
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=130.18 Aligned_cols=151 Identities=24% Similarity=0.241 Sum_probs=111.2
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc-eEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK-FEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~----~~~fD 221 (322)
....|||||||||.+-.++-.. +++|+++|+++.|-+.+.+.+.+.... ++. |+.++.+++ +++||
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~--------~~~~fvva~ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL--------QVERFVVADGENLPQLADGSYD 147 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc--------ceEEEEeechhcCcccccCCee
Confidence 3567899999999997776543 899999999999999999998876322 224 899998886 79999
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccCCCC--CCccccccCCHHHHHHHHHHCC
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELFPGP--SKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aG 298 (322)
+|+|..+||...++. +.|+++++++++||.+.+. +..--+.+++++.+....+ .-...++.+++ +..+.|+++-
T Consensus 148 tVV~TlvLCSve~~~--k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~ 224 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPV--KQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAE 224 (252)
T ss_pred eEEEEEEEeccCCHH--HHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcc
Confidence 999999999999966 9999999998777766554 3322233333332222111 23345555666 7778999999
Q ss_pred CEEEEEeeeec
Q 020710 299 WKIRKRGLITT 309 (322)
Q Consensus 299 f~vv~~~~~~~ 309 (322)
|+..+......
T Consensus 225 f~~~~~kr~~~ 235 (252)
T KOG4300|consen 225 FSIDSCKRFNF 235 (252)
T ss_pred cccchhhcccC
Confidence 99888665543
No 40
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.68 E-value=1.4e-15 Score=129.08 Aligned_cols=143 Identities=18% Similarity=0.225 Sum_probs=99.1
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C-CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L-DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~~fD 221 (322)
++.+|||||||+|.++..+++. +.+++|+|+|++|++.++++ + ++++++|+.+ . +++||
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-----------~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-----------VNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-----------CeEEEEEhhhcccccCCCCcC
Confidence 3679999999999999998765 67899999999999988642 1 1677788754 2 57899
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHH-HhhccCC-------CCCCccccccCCHHHHHHH
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLK-RVGELFP-------GPSKATRAYLHAEADVERA 293 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 293 (322)
+|+|+.+++|++++ ..+++++.+.++. +++.+........... .....++ ......+..+++.+++.++
T Consensus 78 ~Vi~~~~l~~~~d~--~~~l~e~~r~~~~-~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 78 YVILSQTLQATRNP--EEILDEMLRVGRH-AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred EEEEhhHhHcCcCH--HHHHHHHHHhCCe-EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 99999999999984 4899999887654 4444422111111111 0111111 0011223346789999999
Q ss_pred HHHCCCEEEEEeeee
Q 020710 294 LQKVGWKIRKRGLIT 308 (322)
Q Consensus 294 l~~aGf~vv~~~~~~ 308 (322)
++++||++++.....
T Consensus 155 l~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 155 CGELNLRILDRAAFD 169 (194)
T ss_pred HHHCCCEEEEEEEec
Confidence 999999999876653
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.67 E-value=2.9e-16 Score=116.79 Aligned_cols=91 Identities=35% Similarity=0.524 Sum_probs=78.0
Q ss_pred EEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEccc
Q 020710 153 CDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDV 228 (322)
Q Consensus 153 LDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~ 228 (322)
||+|||+|..+..+++. +.+|+++|+|+.|++.++++...... .++.+|+.++ +++||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~-----------~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGV-----------SFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTE-----------EEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCc-----------hheeehHHhCccccccccccccccc
Confidence 89999999999999999 88999999999999999998865432 5889998877 799999999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++|+++ ...+++++.++++++|.+.+
T Consensus 70 ~~~~~~--~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLED--PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSH--HHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccC--HHHHHHHHHHHcCcCeEEeC
Confidence 999965 66999999999988887754
No 42
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=2.5e-16 Score=119.20 Aligned_cols=92 Identities=33% Similarity=0.497 Sum_probs=78.0
Q ss_pred EEEECCCcccchHHHHhcC-----CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 152 VCDAGCGTGSLAIPLAKQG-----AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
|||+|||+|..+..+.+.. .+++|+|+|++|++.++++....+.. ++|++.|+.++ +++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~---------~~~~~~D~~~l~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK---------VRFVQADARDLPFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT---------SEEEESCTTCHHHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc---------eEEEECCHhHCcccCCCeeEE
Confidence 7999999999999999873 78999999999999999999876553 39999999886 7899999
Q ss_pred EEcc-cccccCcchHHHHHHHHHhccCCeE
Q 020710 224 VCLD-VLIHYPQSKADGMIAHLASLAEKRL 252 (322)
Q Consensus 224 ~~~~-~l~~~~~~~~~~~l~~l~~~~~~~~ 252 (322)
+|.. +++|++++++..+++++.++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9954 5999999889999999999887765
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.67 E-value=4.5e-15 Score=129.51 Aligned_cols=148 Identities=26% Similarity=0.384 Sum_probs=106.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
.++.+|||||||+|.++..+++.+++++++|+++.+++.+++++...+... .+...|+.+. .++||+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKI---------DYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCce---------EEEecCHHHhhhhcCCCccE
Confidence 357899999999999999999989999999999999999998876554322 6777776553 478999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECC--ChhhHHHH-----HHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP--KTFYYDLL-----KRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
|++..+++|+++. ..+++.+.+++.+++.+.+.. ........ ..+....+. .......+.+.+++.++++
T Consensus 118 Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 118 VTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK-GTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred EEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc-ccCchhhcCCHHHHHHHHH
Confidence 9999999999984 489999999876666544421 11110000 011111111 1122334668999999999
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
++||++++...
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999998653
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.67 E-value=1.8e-15 Score=140.73 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=105.4
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
..++.+|||||||+|.++..+++. +++|+|+|+|++|++.++++.... . +++...|..+++++||.|+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~---------v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--P---------VEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--e---------EEEEECchhhcCCCCCEEE
Confidence 346789999999999999999986 889999999999999999887432 1 2788889887788999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECC---ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP---KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 301 (322)
+..+++|+++.....+++++.+++++||++.+.. ..... ....|-...-.+..++.+.+++.+.++ .||.+
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~-----~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v 307 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT-----NVDPWINKYIFPNGCLPSVRQIAQASE-GLFVM 307 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC-----CCCCCceeeecCCCcCCCHHHHHHHHH-CCcEE
Confidence 9999999987667899999999887777665421 11100 000111001112234567888888765 58998
Q ss_pred EEEee
Q 020710 302 RKRGL 306 (322)
Q Consensus 302 v~~~~ 306 (322)
.+.+.
T Consensus 308 ~d~~~ 312 (383)
T PRK11705 308 EDWHN 312 (383)
T ss_pred EEEec
Confidence 87643
No 45
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.66 E-value=3.8e-15 Score=128.07 Aligned_cols=141 Identities=20% Similarity=0.146 Sum_probs=99.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC-------CCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG-------GEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~---- 216 (322)
++.+|||+|||.|..+..|+++|++|+|||+|+.+++.+.+. .++.... ......+++.++|+.++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCccc
Confidence 467999999999999999999999999999999999986432 1111000 00112348899999876
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEE--EEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI--LSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERAL 294 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~i--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (322)
.+.||+|+-..+++|++.+....+++.+.+++++||. +...... .....+ ..+..+.+++++++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~---------~~~~~g-----Pp~~~~~~el~~~~ 179 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP---------QEELAG-----PPFSVSDEEVEALY 179 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC---------CccCCC-----CCCCCCHHHHHHHh
Confidence 2689999999999999988888999999998877643 3211100 000111 12457899999999
Q ss_pred HHCCCEEEEEee
Q 020710 295 QKVGWKIRKRGL 306 (322)
Q Consensus 295 ~~aGf~vv~~~~ 306 (322)
.. +|++.....
T Consensus 180 ~~-~~~i~~~~~ 190 (218)
T PRK13255 180 AG-CFEIELLER 190 (218)
T ss_pred cC-CceEEEeee
Confidence 53 377766443
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=1.1e-15 Score=130.18 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|+++... +.+.++|+.+. +++||+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~-------------~~~~~~d~~~~~~~~sfD~V 109 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN-------------INIIQGSLFDPFKDNFFDLV 109 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC-------------CcEEEeeccCCCCCCCEEEE
Confidence 5678999999999999999886 68999999999999999876532 17788887654 6799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
++..+++|++++.+..+++++.++.++.+++.
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~~~~v~i~ 141 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCSNRYILIA 141 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 99999999987778899999999876655543
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.66 E-value=6.5e-16 Score=134.97 Aligned_cols=163 Identities=25% Similarity=0.322 Sum_probs=116.0
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...+++.+.......+.+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++... + +.++.+
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~-------~~~~~~ 87 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----N-------VQFICG 87 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----C-------CeEEec
Confidence 3555566654322345789999999999999999874 4689999999999999877642 1 278888
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-Chh-hHHHHHHhhccCCCCCCccccccCC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-KTF-YYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
|+.+. +++||+|++..+++|..+ ...+++++.++++++|.+.+.. ... ...+...... ....+.+
T Consensus 88 d~~~~~~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 157 (240)
T TIGR02072 88 DAEKLPLEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ--------HGLRYLS 157 (240)
T ss_pred chhhCCCCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH--------hccCCCC
Confidence 88765 578999999999999988 4589999999887777665432 111 1111111111 1123457
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
.+++.+++.++ |+.+........++|.+..+.
T Consensus 158 ~~~~~~~l~~~-f~~~~~~~~~~~~~~~~~~~~ 189 (240)
T TIGR02072 158 LDELKALLKNS-FELLTLEEELITLSFDDPLDV 189 (240)
T ss_pred HHHHHHHHHHh-cCCcEEEEEEEEEeCCCHHHH
Confidence 88999999998 988877777777777665543
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.64 E-value=6.9e-15 Score=121.33 Aligned_cols=131 Identities=19% Similarity=0.199 Sum_probs=94.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
.-.++||+|||.|.++..|+.++.+++++|+|+.+++.|+++..... ++.|++.|+.+. +++||+|++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~----------~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLP----------HVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-S----------SEEEEES-TTT---SS-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCC----------CeEEEECcCCCCCCCCCeeEEEE
Confidence 45789999999999999999998889999999999999999987542 238999999876 799999999
Q ss_pred cccccccCc-chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 226 LDVLIHYPQ-SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 226 ~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+++++++.+ +++..+++.+...+.++|.+++.+.. .. ....|.. ....+.+.++|.+. |..++
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~----~c~~wgh--------~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DA----NCRRWGH--------AAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HH----HHHHTT---------S--HHHHHHHHHHH-SEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CC----cccccCc--------ccchHHHHHHHHHH-hhhee
Confidence 999999986 56788999999888777766664321 11 1222321 12578898999887 54444
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.64 E-value=5.8e-15 Score=131.86 Aligned_cols=145 Identities=20% Similarity=0.252 Sum_probs=105.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||+|||+|..+..+++. + .+|+++|+|+.|++.|+++....+..+ +.|+.+|++++ +++|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~--------v~~~~~d~~~l~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN--------VEFRLGEIEALPVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC--------EEEEEcchhhCCCCCCce
Confidence 46889999999999988877765 3 479999999999999999887665432 38889998775 5689
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
|+|++..+++|.++ ...+++++.+++++||.+.+. ............ ..+.. .....++.+++.++|++
T Consensus 148 D~Vi~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~e~~~~l~~ 220 (272)
T PRK11873 148 DVIISNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDA-ELYAG----CVAGALQEEEYLAMLAE 220 (272)
T ss_pred eEEEEcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhH-HHHhc----cccCCCCHHHHHHHHHH
Confidence 99999999999888 458999999998877766542 111111111111 12211 01123478899999999
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+||..++...
T Consensus 221 aGf~~v~i~~ 230 (272)
T PRK11873 221 AGFVDITIQP 230 (272)
T ss_pred CCCCceEEEe
Confidence 9999887543
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.64 E-value=4e-15 Score=128.62 Aligned_cols=159 Identities=26% Similarity=0.351 Sum_probs=108.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..+++.+... ++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++.. ...+ +.+..+
T Consensus 29 ~~~~~~~~~~---~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~-------i~~~~~ 95 (223)
T TIGR01934 29 RRAVKLIGVF---KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLN-------IEFIQA 95 (223)
T ss_pred HHHHHHhccC---CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCC-------ceEEec
Confidence 3444554433 57899999999999999998873 489999999999999988875 1122 288888
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChh-hHH--------HHHHhhccCCC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTF-YYD--------LLKRVGELFPG 275 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~-~~~--------~~~~~~~~~~~ 275 (322)
|+.+. +++||+|++..+++|+++ ...+++.+.+++++||.+.+. +... ... ....+...+..
T Consensus 96 d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (223)
T TIGR01934 96 DAEALPFEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISK 173 (223)
T ss_pred chhcCCCCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcC
Confidence 88765 468999999999999988 559999999987766655431 1110 000 00111111111
Q ss_pred CCCcc------ccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 276 PSKAT------RAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 276 ~~~~~------~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
..... ...+.+.++++++|.++||++++.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 212 (223)
T TIGR01934 174 NAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLT 212 (223)
T ss_pred CchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeee
Confidence 11000 0124578999999999999988765543
No 51
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.63 E-value=3.9e-15 Score=125.24 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=134.5
Q ss_pred HhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEE
Q 020710 100 YFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSA 175 (322)
Q Consensus 100 ~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~g 175 (322)
.|...+-..|..+|..... ....+..| +..+.-+++.... ....+|||||||.|....++.+. +..|.+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~--rFfkdR~w----L~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~a 102 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHEN--RFFKDRNW----LLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYA 102 (264)
T ss_pred hhhcchhhhhhhhhhhccc--cccchhHH----HHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeEEEE
Confidence 5666666778888865432 22223222 3344444444331 12338999999999999999876 468999
Q ss_pred EeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 176 SDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 176 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
+|.||.+++..+++...... + +.-.+.|+... .+++|.|++..+|.-++++.....++.+++++
T Consensus 103 cDfsp~Ai~~vk~~~~~~e~--~-------~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 103 CDFSPRAIELVKKSSGYDES--R-------VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred cCCChHHHHHHHhccccchh--h-------hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 99999999998877654321 1 14455565442 68999999999999999988999999999999
Q ss_pred CCeEEEEECCChhh---HHH---HHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 249 EKRLILSFAPKTFY---YDL---LKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 249 ~~~~il~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
++||.+.+-.-..+ .-. .+.+.+.++--.+++..|+++.+++.+++.++||..++.+...
T Consensus 174 KPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~ 239 (264)
T KOG2361|consen 174 KPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDC 239 (264)
T ss_pred CCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhccccee
Confidence 88887776432211 111 1233444455567888899999999999999999988755543
No 52
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.62 E-value=3.2e-14 Score=123.34 Aligned_cols=148 Identities=27% Similarity=0.410 Sum_probs=105.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
.+.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++++...+.. ++.+...|+.+. +++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL--------KIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--------ceEEEeCCHHHhhcCCCCCccEE
Confidence 4779999999999999999988889999999999999999988765431 127888887654 3789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECC--ChhhHHHHHH-----hhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP--KTFYYDLLKR-----VGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
++..+++|..++ ..+++.+.+++++++.+.+.. ......+... .....+ ........+.+.+++.+++++
T Consensus 117 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 117 TCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP-KGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred EehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC-CCcCChhhcCCHHHHHHHHHH
Confidence 999999999884 489999999876666544322 1111111110 111111 111122235688999999999
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+||++++...
T Consensus 194 ~G~~i~~~~~ 203 (224)
T TIGR01983 194 AGLRVKDVKG 203 (224)
T ss_pred cCCeeeeeee
Confidence 9999998653
No 53
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.61 E-value=8.7e-15 Score=117.83 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=124.5
Q ss_pred HHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCC-CCCeEEEECCCcccchHHHHhcCCE--
Q 020710 96 VVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSL-KGIAVCDAGCGTGSLAIPLAKQGAI-- 172 (322)
Q Consensus 96 ~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~VLDvGcG~G~~~~~la~~~~~-- 172 (322)
-.++||+.. |++=-..|....+..+....- ...++.++.+.+.+...... ...+|||+|||+|.++..|++.|.+
T Consensus 16 GtK~yWD~~-Y~~El~Nfr~hgd~GEvWFg~-~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~ 93 (227)
T KOG1271|consen 16 GTKSYWDAA-YELELTNFREHGDEGEVWFGE-DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSK 93 (227)
T ss_pred chHHHHHHH-HHHHHhhcccCCCccceecCC-cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCC
Confidence 345788876 444445555555544443331 11223344444444311112 2349999999999999999999763
Q ss_pred EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccC------cchHHHHHHH
Q 020710 173 VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYP------QSKADGMIAH 243 (322)
Q Consensus 173 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~------~~~~~~~l~~ 243 (322)
++|||.|+.+++.|+..++..+..+.+ +|.+.|+.+. .++||+|.--..+.-+. ...+.-.+..
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I-------~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEI-------RFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcce-------eEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 899999999999999999888887655 9999999875 68888888665553332 1112345666
Q ss_pred HHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 244 LASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 244 l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
+.+++.+++|+.+...+ ++.+|+.+.+...||++...-... .|.|...
T Consensus 167 v~~ll~~~gifvItSCN------------------------~T~dELv~~f~~~~f~~~~tvp~p-tF~FgG~ 214 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCN------------------------FTKDELVEEFENFNFEYLSTVPTP-TFMFGGS 214 (227)
T ss_pred HhhccCCCcEEEEEecC------------------------ccHHHHHHHHhcCCeEEEEeeccc-eEEeccc
Confidence 77766666666543322 467899999999999987755443 7777643
No 54
>PRK08317 hypothetical protein; Provisional
Probab=99.61 E-value=2e-14 Score=125.42 Aligned_cols=156 Identities=23% Similarity=0.231 Sum_probs=106.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
+.+++.+.. .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++...... ++.+...
T Consensus 9 ~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~---------~~~~~~~ 76 (241)
T PRK08317 9 ARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGP---------NVEFVRG 76 (241)
T ss_pred HHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCC---------ceEEEec
Confidence 344444443 36789999999999999999886 36899999999999999887332221 1378888
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh--------hhHHHHHHhhccCCCCCCcc
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT--------FYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 280 (322)
|+... +++||+|++..+++|+++. ..+++++.++++++|.+.+.... ........+...+....
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHF--- 151 (241)
T ss_pred ccccCCCCCCCceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcC---
Confidence 87664 5789999999999999984 48999999988776655432111 01111222222221100
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
...+...++.++++++||++++.+...
T Consensus 152 -~~~~~~~~~~~~l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 152 -ADPWLGRRLPGLFREAGLTDIEVEPYT 178 (241)
T ss_pred -CCCcHHHHHHHHHHHcCCCceeEEEEE
Confidence 112345689999999999987765543
No 55
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.61 E-value=1.5e-14 Score=131.33 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=105.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++++.+.+..+++ +++.+|+.+. ...+|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv-------~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRM-------RGIAVDIYKESYPEADAV 219 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceE-------EEEecCccCCCCCCCCEE
Confidence 35689999999999999999988 578999997 78999999999888776655 8999998753 3458999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEE-EEC-----CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFA-----PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
++..++|+++++....+++++++.+++|+.+ +.. +.......+.......... .....+...+++.++|+++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMP--FSVLGFKEQARYKEILESL 297 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccc--cccccCCCHHHHHHHHHHc
Confidence 9999999998876778999999987655543 321 1111111111110000000 0011133579999999999
Q ss_pred CCEEEEE
Q 020710 298 GWKIRKR 304 (322)
Q Consensus 298 Gf~vv~~ 304 (322)
||+.++.
T Consensus 298 Gf~~v~~ 304 (306)
T TIGR02716 298 GYKDVTM 304 (306)
T ss_pred CCCeeEe
Confidence 9998764
No 56
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.61 E-value=5.5e-15 Score=129.56 Aligned_cols=154 Identities=23% Similarity=0.247 Sum_probs=101.2
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE-c
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV-K 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~ 211 (322)
.+++...+.. ..+++|||||||.|+++..++..|++ |+|+|.++......+-...-.+.... .+.. .
T Consensus 104 W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~--------~~~lpl 172 (315)
T PF08003_consen 104 WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPP--------VFELPL 172 (315)
T ss_pred HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCcc--------EEEcCc
Confidence 3777777753 36899999999999999999999885 99999998765543221111111110 2222 2
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCCC--CCCccccc
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFPG--PSKATRAY 283 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~ 283 (322)
.++++ .+.||+|+|..||.|..+|. ..|++++..+.+||-+++. +...- .-+++. ..+..+.|
T Consensus 173 gvE~Lp~~~~FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~-------~~L~P~~rYa~m~nv~ 243 (315)
T PF08003_consen 173 GVEDLPNLGAFDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDEN-------TVLVPEDRYAKMRNVW 243 (315)
T ss_pred chhhccccCCcCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCc-------eEEccCCcccCCCceE
Confidence 34444 68899999999999999977 9999999877555543321 11100 001111 01222223
Q ss_pred -cCCHHHHHHHHHHCCCEEEEEeee
Q 020710 284 -LHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 284 -~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
..+...+..+++++||+.+++-.+
T Consensus 244 FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 244 FIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred EeCCHHHHHHHHHHcCCceEEEecC
Confidence 459999999999999998875443
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.59 E-value=2.8e-15 Score=124.91 Aligned_cols=152 Identities=24% Similarity=0.299 Sum_probs=114.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+.++|...+..+-.++||+|||||.....|.....+++|+|||.+|++.|.++--.. ...+.|+.
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD-------------~L~~Aea~ 178 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD-------------TLYVAEAV 178 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH-------------HHHHHHHH
Confidence 44556666554445689999999999999999888889999999999999998764322 34444443
Q ss_pred cC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 215 SL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 215 ~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+ +.+||+|+...|+.++-. ++.++--...++.+++++.|...+...+ +.+. -.....|-|+...
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~-----~~f~---l~ps~RyAH~~~Y 248 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDD-----GGFV---LGPSQRYAHSESY 248 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCC-----CCee---cchhhhhccchHH
Confidence 21 688999999999999998 7799999999888888887764443211 1111 1233566788999
Q ss_pred HHHHHHHCCCEEEEEeeeec
Q 020710 290 VERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~~~ 309 (322)
+..++...||+++.++.+..
T Consensus 249 Vr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 249 VRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred HHHHHHhcCceEEEeecccc
Confidence 99999999999999876653
No 58
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.57 E-value=4.5e-16 Score=117.32 Aligned_cols=95 Identities=31% Similarity=0.409 Sum_probs=62.1
Q ss_pred EEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEccc
Q 020710 153 CDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDV 228 (322)
Q Consensus 153 LDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~ 228 (322)
||||||+|.++..+.+. +.+++|+|+|+.|++.+++++........ ..+.+...|.... .++||+|++.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNF-----ERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---E-----EEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcce-----eEEEeecCChhhcccccccceehhhhh
Confidence 79999999999999988 77899999999999999888877553210 0013333333322 259999999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
+||+++ ...+++++++++++||++
T Consensus 76 l~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S---HHHHHHHHTTT-TSS-EE
T ss_pred Hhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 999966 669999999999888865
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.57 E-value=9.3e-14 Score=116.28 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=97.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEEEc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVCL 226 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~~ 226 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.++++....+.. ++++.+|+.+. .++||+|+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG---------LDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc---------eEEEEcccccccCCcccEEEEC
Confidence 4678999999999999999998879999999999999999998765442 27888897654 6799999999
Q ss_pred ccccccCcch-------------------HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 227 DVLIHYPQSK-------------------ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 227 ~~l~~~~~~~-------------------~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
..+++.+++. ...+++++.++++++|.+.+.... ....
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~-----------------------~~~~ 146 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS-----------------------LNGE 146 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec-----------------------cCCh
Confidence 8887765421 356788888877766655442211 1125
Q ss_pred HHHHHHHHHCCCEEEEEee
Q 020710 288 ADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~ 306 (322)
.++.+.+++.||++.....
T Consensus 147 ~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred HHHHHHHHhCCCeEEEEEE
Confidence 6889999999998776543
No 60
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.57 E-value=1.5e-13 Score=124.29 Aligned_cols=145 Identities=12% Similarity=0.082 Sum_probs=98.8
Q ss_pred HHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEE
Q 020710 98 REYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVS 174 (322)
Q Consensus 98 ~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~ 174 (322)
+-+||..+-+-|.+++...+.+. ...+. ..++...+.+... ..++.+|||+|||+|..+..|++. +.+|+
T Consensus 20 ~~~yd~~G~~lf~~i~~~peYy~-tr~E~-----~il~~~~~~ia~~-~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~ 92 (301)
T TIGR03438 20 KYFYDARGSELFEQICELPEYYP-TRTEA-----AILERHADEIAAA-TGAGCELVELGSGSSRKTRLLLDALRQPARYV 92 (301)
T ss_pred hhcccchHHHHHHHHHCCCcccc-HHHHH-----HHHHHHHHHHHHh-hCCCCeEEecCCCcchhHHHHHHhhccCCeEE
Confidence 46889988888998887443332 11111 1223323322221 124578999999999999999987 57899
Q ss_pred EEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc-----cEEEEcccccccCcchHHHHHHHHHh
Q 020710 175 ASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY-----DTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 175 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f-----D~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
++|+|++|++.+++++....... .+.++++|+.+. ...+ .++++..+++|+++++...+++++++
T Consensus 93 ~iDiS~~mL~~a~~~l~~~~p~~-------~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 93 PIDISADALKESAAALAADYPQL-------EVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred EEECCHHHHHHHHHHHHhhCCCc-------eEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 99999999999999876532211 126788998653 2333 34444567888988778899999999
Q ss_pred ccCCeEEEEE
Q 020710 247 LAEKRLILSF 256 (322)
Q Consensus 247 ~~~~~~il~~ 256 (322)
.+++|+.+.+
T Consensus 166 ~L~pgG~~li 175 (301)
T TIGR03438 166 LLGPGGGLLI 175 (301)
T ss_pred hcCCCCEEEE
Confidence 8877665543
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.56 E-value=1.8e-13 Score=114.81 Aligned_cols=120 Identities=21% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||+|||+|..+..++.. +++|+++|+|+.|++.++++....+..+ ++|+.+|+.+. .++||+|
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~--------i~~~~~d~~~~~~~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN--------VTVVHGRAEEFGQEEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC--------EEEEeccHhhCCCCCCccEE
Confidence 4789999999999999998864 6899999999999999999998877643 38999998776 4689999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
++.. +.+ ...+++.+.+++++||.+.+.... ....+++++.++.|+.+..
T Consensus 117 ~~~~----~~~--~~~~l~~~~~~LkpGG~lv~~~~~------------------------~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 117 TSRA----VAS--LSDLVELCLPLLKPGGRFLALKGR------------------------DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred EEcc----ccC--HHHHHHHHHHhcCCCeEEEEEeCC------------------------ChHHHHHHHHHhcCceEee
Confidence 9864 233 568999999988777766553211 1245788888888998766
Q ss_pred Ee
Q 020710 304 RG 305 (322)
Q Consensus 304 ~~ 305 (322)
+.
T Consensus 167 ~~ 168 (187)
T PRK00107 167 VI 168 (187)
T ss_pred eE
Confidence 43
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=2.6e-13 Score=113.48 Aligned_cols=123 Identities=20% Similarity=0.175 Sum_probs=90.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++..+.+..+ ++++++|+.+. +++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~--------i~~i~~d~~~~~~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN--------VEIVNGRAEDFQHEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC--------eEEEecchhhccccCCccEE
Confidence 4789999999999999998865 4689999999999999999887766532 38999999875 5799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH---CCCE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK---VGWK 300 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~ 300 (322)
++.. +++ ...+++.+.++++++|.+.+.... ....++..+.++ .||+
T Consensus 114 ~s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~~~------------------------~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 114 TSRA-LAS-----LNVLLELTLNLLKVGGYFLAYKGK------------------------KYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred Eehh-hhC-----HHHHHHHHHHhcCCCCEEEEEcCC------------------------CcHHHHHHHHHhhhhcCce
Confidence 9865 333 346777778877666666543211 123344444444 7999
Q ss_pred EEEEeeee
Q 020710 301 IRKRGLIT 308 (322)
Q Consensus 301 vv~~~~~~ 308 (322)
.+++....
T Consensus 164 ~~~~~~~~ 171 (181)
T TIGR00138 164 PLEVPPLT 171 (181)
T ss_pred EeeccccC
Confidence 88876554
No 63
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.54 E-value=7.7e-14 Score=115.74 Aligned_cols=125 Identities=21% Similarity=0.314 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHH
Q 020710 107 QRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEA 186 (322)
Q Consensus 107 ~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a 186 (322)
+.|+..|.....+...+.. +.++.++++...++ .+.-|||||||+|..+..|.+.|..++|+|||+.|++.|
T Consensus 17 d~eA~kYt~nsri~~IQ~e-------m~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVLIQAE-------MAERALELLALPGP-KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQA 88 (270)
T ss_pred hhhhhhccccceeeeehHH-------HHHHHHHHhhCCCC-CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHH
Confidence 3568888776555554443 45778888876633 567899999999999999999999999999999999999
Q ss_pred HHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEEEccccccc---------CcchHHHHHHHHHhccCCeE
Q 020710 187 RKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDVLIHY---------PQSKADGMIAHLASLAEKRL 252 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~---------~~~~~~~~l~~l~~~~~~~~ 252 (322)
.++--+ + .++.+|+-+- +++||.+|+...++++ |...+..++..|+.+++.+.
T Consensus 89 ~~~e~e-g------------dlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 89 VERELE-G------------DLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGA 154 (270)
T ss_pred HHhhhh-c------------CeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCc
Confidence 874332 2 7888887542 7999999998777543 33446677888888765443
No 64
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.53 E-value=1e-13 Score=119.03 Aligned_cols=148 Identities=22% Similarity=0.218 Sum_probs=100.2
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCC---CCCCCCCceEEcccccC----CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNG---GEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~---~~~~~~~~~~~~d~~~~----~~ 218 (322)
.++.+||..|||.|..+..|+++|.+|+|+|+|+.+++.+.+.... ....... ......+++.++|+.++ .+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 4677999999999999999999999999999999999998544322 1100000 00112358899999886 36
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
+||+|+-..+|+-+|++...+..+++.+++++++.+.+.. +.+ +........|..+.+++++++. .+
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~--l~~----------~~~~~~GPPf~v~~~ev~~l~~-~~ 182 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT--LEY----------PQGEMEGPPFSVTEEEVRELFG-PG 182 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE--EES-----------CSCSSSSS----HHHHHHHHT-TT
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE--EEc----------CCcCCCCcCCCCCHHHHHHHhc-CC
Confidence 8999999999999999888999999999987766522210 100 0001112233458899999997 88
Q ss_pred CEEEEEeee
Q 020710 299 WKIRKRGLI 307 (322)
Q Consensus 299 f~vv~~~~~ 307 (322)
|++...+..
T Consensus 183 f~i~~l~~~ 191 (218)
T PF05724_consen 183 FEIEELEEE 191 (218)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEecc
Confidence 998876653
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=7.8e-14 Score=115.51 Aligned_cols=148 Identities=24% Similarity=0.344 Sum_probs=108.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.+++..+.. ....+|.|+|||+|..+..|+++ ++.++|+|-|++|++.|+++..+ ++|..+|
T Consensus 20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-------------~~f~~aD 83 (257)
T COG4106 20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-------------ATFEEAD 83 (257)
T ss_pred HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-------------Cceeccc
Confidence 445555554 36789999999999999999998 78999999999999999877654 3899999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhh---HHHHHHh------hccCCCCCCcc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFY---YDLLKRV------GELFPGPSKAT 280 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~---~~~~~~~------~~~~~~~~~~~ 280 (322)
+.+. +..+|+++++.+|+++|+. ..++.++...+.+|+++.+ .|+++- ....... ...+.+.. ..
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~-~~ 160 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRG-LT 160 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccc-cc
Confidence 9887 5689999999999999994 4899999888877777755 233211 1111111 11222211 13
Q ss_pred ccccCCHHHHHHHHHHCCCEE
Q 020710 281 RAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~v 301 (322)
+....+...+-++|...+.+|
T Consensus 161 r~~v~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 161 RAPLPSPAAYYELLAPLACRV 181 (257)
T ss_pred cCCCCCHHHHHHHhCccccee
Confidence 455668888888888887765
No 66
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.52 E-value=5.5e-13 Score=114.35 Aligned_cols=152 Identities=12% Similarity=0.062 Sum_probs=101.5
Q ss_pred HHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh-hc---cCCCCCCCCCceEEccc
Q 020710 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL-LA---DNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 138 ~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~---~~~~~~~~~~~~~~~d~ 213 (322)
.+++......++.+||+.|||.|..+.+|+++|.+|+|+|+|+.+++.+.+...... +. ......-..++++++|+
T Consensus 33 ~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~ 112 (226)
T PRK13256 33 VKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI 112 (226)
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC
Confidence 344443322356899999999999999999999999999999999998865321000 00 00000112359999999
Q ss_pred ccCC------CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 214 ESLD------GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 214 ~~~~------~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
.+++ +.||+|+-..+++++|++...+..+++.+++++++.+.+.. +.++ . ......+..+.
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~--~~~~----------~-~~~GPPf~v~~ 179 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV--MEHD----------K-KSQTPPYSVTQ 179 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE--EecC----------C-CCCCCCCcCCH
Confidence 8873 58999999999999999888999999999876655333211 1000 0 01112233578
Q ss_pred HHHHHHHHHCCCEEEE
Q 020710 288 ADVERALQKVGWKIRK 303 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~ 303 (322)
+++++++.+ +|++..
T Consensus 180 ~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 180 AELIKNFSA-KIKFEL 194 (226)
T ss_pred HHHHHhccC-CceEEE
Confidence 899998854 355443
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=6.3e-14 Score=134.86 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=106.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++.... . .++.++++|+.
T Consensus 27 ~~il~~l~~~---~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~-------~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLPPY---EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---Y-------KNVKFMCADVT 93 (475)
T ss_pred hHHHhhcCcc---CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---C-------CceEEEEeccc
Confidence 4455555432 467999999999999999999988999999999999887653221 1 12378889885
Q ss_pred c--C---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 215 S--L---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 215 ~--~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
. + +++||+|+|..+++|++++....++++++++++++|++.+....+... +.... ..... .+....+
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-----~~~~~--~~~~~-~~~~~~~ 165 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-----GDSKR--KNNPT-HYREPRF 165 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-----Ccccc--cCCCC-eecChHH
Confidence 3 2 578999999999999998777899999999988888776643322110 00000 00111 1235779
Q ss_pred HHHHHHHCCCEEEEE
Q 020710 290 VERALQKVGWKIRKR 304 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~ 304 (322)
+.+++.++||.....
T Consensus 166 ~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 166 YTKVFKECHTRDEDG 180 (475)
T ss_pred HHHHHHHheeccCCC
Confidence 999999999987653
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.50 E-value=7.6e-13 Score=111.54 Aligned_cols=133 Identities=16% Similarity=0.051 Sum_probs=96.7
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+..+ ++++.+|+
T Consensus 22 ~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~--------i~~~~~d~ 90 (187)
T PRK08287 22 LALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN--------IDIIPGEA 90 (187)
T ss_pred HHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC--------eEEEecCc
Confidence 34445543 35789999999999999999887 4689999999999999999887665432 37888887
Q ss_pred ccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 214 ESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 214 ~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
... .++||+|++....++ +..+++.+.+.+++++.+.+.... ..+.+++.+
T Consensus 91 ~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~-----------------------~~~~~~~~~ 142 (187)
T PRK08287 91 PIELPGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFIL-----------------------LENLHSALA 142 (187)
T ss_pred hhhcCcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEec-----------------------HhhHHHHHH
Confidence 533 678999999765443 446788888877777766542110 113567889
Q ss_pred HHHHCCCEEEEEeee
Q 020710 293 ALQKVGWKIRKRGLI 307 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~ 307 (322)
++++.||+.++...+
T Consensus 143 ~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 143 HLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHCCCCcceEEEE
Confidence 999999986664333
No 69
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.49 E-value=1.6e-13 Score=121.70 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=82.7
Q ss_pred CCCeEEEECCCccc----chHHHHhc-------CCEEEEEeCCHHHHHHHHHHhHHh----hhc------------c--C
Q 020710 148 KGIAVCDAGCGTGS----LAIPLAKQ-------GAIVSASDISAAMVAEARKKAEEE----LLA------------D--N 198 (322)
Q Consensus 148 ~~~~VLDvGcG~G~----~~~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~~----~~~------------~--~ 198 (322)
++.+|||+|||+|. ++..+++. +.+|+|+|+|+.|++.|++..-.. +.. + +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 44455543 358999999999999999754110 000 0 0
Q ss_pred CCCC-CCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 199 GGEA-PVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 199 ~~~~-~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
++.. ..++.|.+.|+.+. +++||+|+|.++++|++++....+++++++.+++||++.+.+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0000 01358999998775 5789999999999999887778999999999988888877543
No 70
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=2.4e-12 Score=111.53 Aligned_cols=111 Identities=27% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 137 ~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
+.+.+......++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++...+... .++.+|+.+
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~---------~~~~~d~~~ 95 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDV---------DVRRGDWAR 95 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCee---------EEEECchhh
Confidence 33444333234578999999999999999998866 89999999999999999887665432 788888865
Q ss_pred C--CCCccEEEEcccccccCcc-------------------hHHHHHHHHHhccCCeEEEEE
Q 020710 216 L--DGKYDTVVCLDVLIHYPQS-------------------KADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 216 ~--~~~fD~V~~~~~l~~~~~~-------------------~~~~~l~~l~~~~~~~~il~~ 256 (322)
. +++||+|+++..+...+.. .+..+++++.++++++|.+.+
T Consensus 96 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 96 AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4 5789999998543222110 134677778787776665554
No 71
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.46 E-value=1.8e-12 Score=114.18 Aligned_cols=136 Identities=28% Similarity=0.256 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
......+++.+... ..++.+|||+|||+|.++..+++.|.. |+|+|+|+.|++.|++++...+...++ .+.
T Consensus 103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~-------~~~ 174 (250)
T PRK00517 103 HPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNV-------YLP 174 (250)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceE-------EEc
Confidence 34445555565543 246789999999999999988888764 999999999999999998776543211 222
Q ss_pred EcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 210 VKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 210 ~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+ +.+||+|+++... +.+..+++++.+.+++||++.+..-. ....++
T Consensus 175 ~~-----~~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~-----------------------~~~~~~ 221 (250)
T PRK00517 175 QG-----DLKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGIL-----------------------EEQADE 221 (250)
T ss_pred cC-----CCCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECc-----------------------HhhHHH
Confidence 22 2279999986432 22557888888888777766653110 013568
Q ss_pred HHHHHHHCCCEEEEEeee
Q 020710 290 VERALQKVGWKIRKRGLI 307 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~ 307 (322)
+.+.+++.||+++.....
T Consensus 222 v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 222 VLEAYEEAGFTLDEVLER 239 (250)
T ss_pred HHHHHHHCCCEEEEEEEe
Confidence 899999999999876554
No 72
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.45 E-value=1.1e-12 Score=117.49 Aligned_cols=153 Identities=24% Similarity=0.189 Sum_probs=103.2
Q ss_pred hhhhhcCchhHHHHHHH-HhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCC
Q 020710 123 QLDIRLGHSKTVENTMQ-MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNG 199 (322)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 199 (322)
...+++..+.++...+. ++... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+..+++
T Consensus 98 vlipr~~te~lv~~~l~~~~~~~---~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i 174 (284)
T TIGR03533 98 VLIPRSPIAELIEDGFAPWLEPE---PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRV 174 (284)
T ss_pred CccCCCchHHHHHHHHHHHhccC---CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 33355555556666554 33222 3578999999999999999987 579999999999999999999887765444
Q ss_pred CCCCCCCceEEcccccC--CCCccEEEEcccc------c-------ccCc----------chHHHHHHHHHhccCCeEEE
Q 020710 200 GEAPVMPKFEVKDLESL--DGKYDTVVCLDVL------I-------HYPQ----------SKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 200 ~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l------~-------~~~~----------~~~~~~l~~l~~~~~~~~il 254 (322)
.|+++|+.+. +++||+|+++--. . |-|. +....+++.+.+.++++|.+
T Consensus 175 -------~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l 247 (284)
T TIGR03533 175 -------TLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVL 247 (284)
T ss_pred -------EEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 8999998543 4589999996321 1 1111 11246677777777766666
Q ss_pred EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecc
Q 020710 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQ 310 (322)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~ 310 (322)
.+... ++.+.+.+++.++||.-...+.....
T Consensus 248 ~~e~g-------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (284)
T TIGR03533 248 VVEVG-------------------------NSMEALEEAYPDVPFTWLEFENGGDG 278 (284)
T ss_pred EEEEC-------------------------cCHHHHHHHHHhCCCceeeecCCCcE
Confidence 55221 12357778888888877665544433
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=3.4e-12 Score=107.40 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=94.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++++...+..++ .+.+..+|+.+. +++||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~------~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNN------GVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCc------ceEEEeccccccccccCceEEEE
Confidence 567899999999999999999999999999999999999998876655432 027788887554 458999998
Q ss_pred cccccccC-------------------cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 226 LDVLIHYP-------------------QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 226 ~~~l~~~~-------------------~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+..+.+.. ......+++++.+++++++.+.+.... ...
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------------------~~~ 153 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------------------LTG 153 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------cCC
Confidence 76543311 111356788888877666654432111 123
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 020710 287 EADVERALQKVGWKIRKRG 305 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~ 305 (322)
.+++.+++.++||++....
T Consensus 154 ~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 154 EDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHHHHHCCCeeeeee
Confidence 5688999999999987654
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.44 E-value=1e-12 Score=115.88 Aligned_cols=143 Identities=27% Similarity=0.294 Sum_probs=101.6
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
+.....++..+++.+.. .+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+..+
T Consensus 70 ~~~~~~l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~------- 138 (251)
T TIGR03534 70 RPDTEELVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDN------- 138 (251)
T ss_pred CCChHHHHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-------
Confidence 33444555666666543 3568999999999999999987 6689999999999999999987765532
Q ss_pred CCceEEcccccC--CCCccEEEEcccccc------cCcch------------------HHHHHHHHHhccCCeEEEEECC
Q 020710 205 MPKFEVKDLESL--DGKYDTVVCLDVLIH------YPQSK------------------ADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 205 ~~~~~~~d~~~~--~~~fD~V~~~~~l~~------~~~~~------------------~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+.++++|+.+. +++||+|+++..+.. +.... ...+++.+.++++++|.+.+..
T Consensus 139 -~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 139 -VTFLQSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -EEEEECchhccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 38899998654 678999999644321 21111 2356778888777776665521
Q ss_pred ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 259 KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
. +...+++.++++++||+.+...
T Consensus 218 ~------------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 218 G------------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred C------------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1 1135689999999999877653
No 75
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=99.44 E-value=5.1e-13 Score=97.24 Aligned_cols=97 Identities=46% Similarity=0.867 Sum_probs=92.1
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
|.++|.|+|.+...+++.+|.....+.+|+.+.|.+.....+..+|++|++.+..+..+.+.++++.+++.++||++.+.
T Consensus 1 ~mDvLIHYp~~d~~~~l~~La~~t~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~ 80 (97)
T PF07109_consen 1 CMDVLIHYPAEDAAQMLAHLASRTRGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRT 80 (97)
T ss_pred CcceEeccCHHHHHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeec
Confidence 45677899988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceehhhhhhhcc
Q 020710 305 GLITTQFYFARLVEAVP 321 (322)
Q Consensus 305 ~~~~~~~~f~~~~~~~~ 321 (322)
+.+...|||+.++|++|
T Consensus 81 ~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 81 ERISSGFYISQLLEAVR 97 (97)
T ss_pred ccccCcChHHHHhhccC
Confidence 99999999999999876
No 76
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.44 E-value=8.4e-13 Score=112.59 Aligned_cols=101 Identities=22% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc-ccC-----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL-ESL-----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~-----~~~ 219 (322)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+..+ +.|+++|+ ..+ +++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~--------v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN--------LRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC--------EEEEecCHHHHHHHHcCccc
Confidence 3679999999999999999876 5689999999999999999887665422 38999998 432 578
Q ss_pred ccEEEEcccccccCc------chHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQ------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|++.....+... .....+++++.++++++|++.+
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 999998765432221 1135789999998877776654
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.43 E-value=2.1e-12 Score=115.99 Aligned_cols=131 Identities=26% Similarity=0.236 Sum_probs=93.0
Q ss_pred cccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 118 DVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.++.....+++..+.+++.+++.+... .+..+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+.
T Consensus 86 ~v~~~vliPr~ete~lv~~~l~~~~~~--~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~ 163 (284)
T TIGR00536 86 FVNEHVLIPRPETEELVEKALASLISQ--NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL 163 (284)
T ss_pred EECCCCcCCCCccHHHHHHHHHHhhhc--CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 344444456666777888877665432 12368999999999999999987 46899999999999999999887766
Q ss_pred ccCCCCCCCCCceEEcccccC--CCCccEEEEcc-------------cccccCc----------chHHHHHHHHHhccCC
Q 020710 196 ADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLD-------------VLIHYPQ----------SKADGMIAHLASLAEK 250 (322)
Q Consensus 196 ~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~-------------~l~~~~~----------~~~~~~l~~l~~~~~~ 250 (322)
.+++ .|+++|+.+. .++||+|+++- ++.|-|. .....+++.+.+.+++
T Consensus 164 ~~~v-------~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~ 236 (284)
T TIGR00536 164 EHRV-------EFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP 236 (284)
T ss_pred CCcE-------EEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 5434 8999998664 34899999962 2333331 1244667777777776
Q ss_pred eEEEEEC
Q 020710 251 RLILSFA 257 (322)
Q Consensus 251 ~~il~~~ 257 (322)
+|++.+.
T Consensus 237 gG~l~~e 243 (284)
T TIGR00536 237 NGFLVCE 243 (284)
T ss_pred CCEEEEE
Confidence 6666553
No 78
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=2.2e-12 Score=115.13 Aligned_cols=144 Identities=31% Similarity=0.387 Sum_probs=102.3
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+..++..+....+++|... ..++.+|||||||+|.++...++.|+ +|+|+|++|.+++.|++++..+++..
T Consensus 139 AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~------ 211 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED------ 211 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT------
T ss_pred cccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe------
Confidence 34445566777777777765 35678999999999999999999987 59999999999999999999988876
Q ss_pred CCCceEEccccc-CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 204 VMPKFEVKDLES-LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 204 ~~~~~~~~d~~~-~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
.+......+ ..++||+|+++-. .+.+..++..+.+++++++.+++.- ++
T Consensus 212 ---~~~v~~~~~~~~~~~dlvvANI~-----~~vL~~l~~~~~~~l~~~G~lIlSG-------------Il--------- 261 (295)
T PF06325_consen 212 ---RIEVSLSEDLVEGKFDLVVANIL-----ADVLLELAPDIASLLKPGGYLILSG-------------IL--------- 261 (295)
T ss_dssp ---CEEESCTSCTCCS-EEEEEEES------HHHHHHHHHHCHHHEEEEEEEEEEE-------------EE---------
T ss_pred ---eEEEEEecccccccCCEEEECCC-----HHHHHHHHHHHHHhhCCCCEEEEcc-------------cc---------
Confidence 343322222 2689999997533 2336677888888777777665521 10
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
-...+++.+.+++ ||++++....
T Consensus 262 -~~~~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 262 -EEQEDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp -GGGHHHHHHHHHT-TEEEEEEEEE
T ss_pred -HHHHHHHHHHHHC-CCEEEEEEEE
Confidence 0135788888877 9999876544
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=1.9e-12 Score=110.61 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
....+++.+.. .++.+|||||||+|..+..+++. +.+|+++|++++|++.+++++...+..+++ ++.
T Consensus 60 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v-------~~~ 129 (205)
T PRK13944 60 MVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVV-------EVY 129 (205)
T ss_pred HHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE-------EEE
Confidence 34555555543 35789999999999999888875 468999999999999999998877654333 889
Q ss_pred EcccccC---CCCccEEEEcccccccCc
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
.+|+.+. .++||+|++..+++|+++
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAAASTIPS 157 (205)
T ss_pred ECCcccCCccCCCccEEEEccCcchhhH
Confidence 9998653 468999999999888764
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.41 E-value=4.4e-12 Score=114.02 Aligned_cols=137 Identities=26% Similarity=0.291 Sum_probs=96.3
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
.+....++++... ..++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....+..+++ .+..
T Consensus 144 ~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~-------~~~~ 215 (288)
T TIGR00406 144 PTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL-------QVKL 215 (288)
T ss_pred HHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce-------EEEe
Confidence 4444555555543 23578999999999999999988865 7999999999999999998876654422 5555
Q ss_pred cccccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 211 KDLESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 211 ~d~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+.... +++||+|+++...+ .+..++.++.+++++||.+.+..-. ....++
T Consensus 216 ~~~~~~~~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~-----------------------~~~~~~ 267 (288)
T TIGR00406 216 IYLEQPIEGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLILSGIL-----------------------ETQAQS 267 (288)
T ss_pred cccccccCCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc-----------------------HhHHHH
Confidence 554333 67899999975432 2457888888888777766552110 012457
Q ss_pred HHHHHHHCCCEEEEEe
Q 020710 290 VERALQKVGWKIRKRG 305 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~ 305 (322)
+.+.+++. |++++..
T Consensus 268 v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 268 VCDAYEQG-FTVVEIR 282 (288)
T ss_pred HHHHHHcc-CceeeEe
Confidence 77778766 8877653
No 81
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=2.3e-12 Score=119.16 Aligned_cols=97 Identities=31% Similarity=0.339 Sum_probs=73.6
Q ss_pred cccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 118 DVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.++.....+++..+.+++.+++.+. ++.+|||+|||+|.++..++.. +++|+++|+|+.|++.++++....+.
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~ 300 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA 300 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3444444556656666666665543 3468999999999999998865 67899999999999999999877654
Q ss_pred ccCCCCCCCCCceEEcccccC----CCCccEEEEccc
Q 020710 196 ADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDV 228 (322)
Q Consensus 196 ~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~ 228 (322)
. +.|+++|+.+. .++||+|+|+--
T Consensus 301 r---------V~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 301 R---------VEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred c---------EEEEEcchhccccccCCCccEEEECCC
Confidence 2 28999998543 467999999764
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.8e-12 Score=111.44 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=106.8
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+..++..+....++++... ..++.+|||+|||+|.+++..++.|+. |+|+|++|.+++.+++++..+++....
T Consensus 140 AFGTG~HpTT~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---- 214 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV---- 214 (300)
T ss_pred ccCCCCChhHHHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh----
Confidence 34445556667777777765 357899999999999999999999885 999999999999999999887765211
Q ss_pred CCCceEEcccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccc
Q 020710 204 VMPKFEVKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATR 281 (322)
Q Consensus 204 ~~~~~~~~d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (322)
.....+.... .++||+|+++=. -+.+..+...+.+++++++.+++.- ++.
T Consensus 215 ---~~~~~~~~~~~~~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIlSG-------------Il~------- 266 (300)
T COG2264 215 ---QAKGFLLLEVPENGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLILSG-------------ILE------- 266 (300)
T ss_pred ---hcccccchhhcccCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEEEe-------------ehH-------
Confidence 2223333222 469999998642 2225678888888888777776532 110
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
...+.+.+.+.+.||+++.+....
T Consensus 267 ---~q~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 267 ---DQAESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred ---hHHHHHHHHHHhCCCeEeEEEecC
Confidence 025688899999999999876554
No 83
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.40 E-value=6.6e-12 Score=112.09 Aligned_cols=134 Identities=24% Similarity=0.311 Sum_probs=85.7
Q ss_pred CCCeEEEECCCcccchHHHHhc-----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
...+|||+|||+|.++..+++. +++++|+|+|+.|++.|+++... +.|.++|+.++ +++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~-------------~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQ-------------VTFCVASSHRLPFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCC-------------CeEEEeecccCCCcCCc
Confidence 4578999999999999998865 24799999999999999876421 27889888775 679
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
||+|++... + ..++++++++++|| ++.+.+...+...+. +..+. ... .+.. .. ....|
T Consensus 152 fD~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p~~~~l~el~---~~~~~---~~~--~~~~-~~---~~~~g 210 (272)
T PRK11088 152 LDAIIRIYA----P-----CKAEELARVVKPGGIVITVTPGPRHLFELK---GLIYD---EVR--LHAP-EA---EQLEG 210 (272)
T ss_pred eeEEEEecC----C-----CCHHHHHhhccCCCEEEEEeCCCcchHHHH---HHhcc---ccc--cccc-ch---hhccC
Confidence 999998653 1 23466777665555 444444432221222 22211 000 0111 11 12369
Q ss_pred CEEEEEeeeecceehhh
Q 020710 299 WKIRKRGLITTQFYFAR 315 (322)
Q Consensus 299 f~vv~~~~~~~~~~f~~ 315 (322)
|++++.+.+...+.+..
T Consensus 211 F~~~~~~~~~~~~~l~~ 227 (272)
T PRK11088 211 FELQHSERLAYPMRLTG 227 (272)
T ss_pred CCeeeEEEEEEEEEeCH
Confidence 99998888877776643
No 84
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=4.5e-12 Score=99.05 Aligned_cols=106 Identities=15% Similarity=0.044 Sum_probs=80.3
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+..+ +.++..|
T Consensus 9 ~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~~~ 77 (124)
T TIGR02469 9 ALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN--------IVIVEGD 77 (124)
T ss_pred HHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc--------eEEEecc
Confidence 344444432 34679999999999999999987 4689999999999999999887765432 3788888
Q ss_pred ccc----CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 213 LES----LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~----~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.. ..++||.|++.....+ ...+++.+.+.+++++.+.+
T Consensus 78 ~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 78 APEALEDSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ccccChhhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEE
Confidence 654 2478999998765432 45889999998877776654
No 85
>PRK06922 hypothetical protein; Provisional
Probab=99.39 E-value=1.7e-12 Score=125.20 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=79.9
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....+.. +.++++|+.++ +++|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~---------ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRS---------WNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCC---------eEEEEcchHhCccccCCCCE
Confidence 4789999999999999888875 679999999999999999886544322 27788887653 5789
Q ss_pred cEEEEcccccccC-----------cchHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYP-----------QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~-----------~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|+++.++||+. ++....+++++.+++++||.+.+
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999998763 23467899999998877775554
No 86
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=4.7e-12 Score=112.36 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcccc-hHHHHh-c--CCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 148 KGIAVCDAGCGTGSL-AIPLAK-Q--GAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~-~~~la~-~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
++.+|+|||||.|.+ +..++. . +.+++|+|+++++++.|++.+.. .++.+++ +|.++|+.+. .+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV-------~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRM-------FFHTADVMDVTESLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCc-------EEEECchhhcccccCC
Confidence 578999999997744 444443 2 56899999999999999999964 6666555 9999998765 378
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|+|. +++++..+...++++++++.+++|+++.+-
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999999 999996555779999999988888877663
No 87
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=4.5e-12 Score=106.79 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=104.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCC-----------------------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLA-DNGG----------------------- 200 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~----------------------- 200 (322)
..+..+|||||..|.++..+++. |+ .+.|+||++..|+.|++++...... ..+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45778999999999999999998 66 4999999999999999987532110 1000
Q ss_pred ----------CCCCCCceEEcccccC-CCCccEEEEccccccc----CcchHHHHHHHHHhccCCeEEEEECCChhh-HH
Q 020710 201 ----------EAPVMPKFEVKDLESL-DGKYDTVVCLDVLIHY----PQSKADGMIAHLASLAEKRLILSFAPKTFY-YD 264 (322)
Q Consensus 201 ----------~~~~~~~~~~~d~~~~-~~~fD~V~~~~~l~~~----~~~~~~~~l~~l~~~~~~~~il~~~~~~~~-~~ 264 (322)
....+..+...|+.++ ...||+|+|..+-.++ -|+.+..+++++.+++.+||++++.|..|- |.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 0001112222233333 5789999998765443 377789999999999999999999998763 22
Q ss_pred HHHHhhccCCCCCCccccccCCHHHHHHHHHHC--CCEEEE
Q 020710 265 LLKRVGELFPGPSKATRAYLHAEADVERALQKV--GWKIRK 303 (322)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~vv~ 303 (322)
-..+..+.+.. ......+.++.++.++.+. ||+-++
T Consensus 217 kaar~~e~~~~---ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 217 KAARRSEKLAA---NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHHHHHhhc---CccceecCHHHHHhhhhhhhhheeeec
Confidence 22233323321 2223356889999999887 676444
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.38 E-value=2.1e-12 Score=119.13 Aligned_cols=115 Identities=22% Similarity=0.217 Sum_probs=84.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+-+++.+... ...+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++...+... ..+++|...|
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~-----~~~v~~~~~D 289 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-----LDRCEFMINN 289 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc-----CceEEEEEcc
Confidence 4455666543 3469999999999999999987 5789999999999999999987654321 0123788888
Q ss_pred cccC--CCCccEEEEccccccc---CcchHHHHHHHHHhccCCeEEEEEC
Q 020710 213 LESL--DGKYDTVVCLDVLIHY---PQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~---~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
..+. +++||+|+|+-.+|.. .+....++++..++.+++||.+.+.
T Consensus 290 ~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 290 ALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 7543 4589999998777542 3344568899999887766655443
No 89
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.37 E-value=4.5e-12 Score=122.06 Aligned_cols=110 Identities=25% Similarity=0.220 Sum_probs=87.0
Q ss_pred HHhcCCCcccchhhhhhcCchhHHHHHHHHhhhc---------------------CCCCCCeEEEECCCcccchHHHHhc
Q 020710 111 KIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDE---------------------GSLKGIAVCDAGCGTGSLAIPLAKQ 169 (322)
Q Consensus 111 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~VLDvGcG~G~~~~~la~~ 169 (322)
.+|+....+++....+|+.++.+++.+++.+... ...++.+|||+|||+|.++..++..
T Consensus 80 ~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~ 159 (506)
T PRK01544 80 EFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE 159 (506)
T ss_pred EEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH
Confidence 4566667788888899999999999988776420 0113468999999999999998865
Q ss_pred --CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEcc
Q 020710 170 --GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLD 227 (322)
Q Consensus 170 --~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~ 227 (322)
+.+|+++|+|+.+++.|++++...++.+++ .++.+|+.+. .++||+|+|+-
T Consensus 160 ~p~~~v~avDis~~al~~A~~N~~~~~l~~~v-------~~~~~D~~~~~~~~~fDlIvsNP 214 (506)
T PRK01544 160 LPNANVIATDISLDAIEVAKSNAIKYEVTDRI-------QIIHSNWFENIEKQKFDFIVSNP 214 (506)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHcCCccce-------eeeecchhhhCcCCCccEEEECC
Confidence 679999999999999999998877665444 8889997543 46899999964
No 90
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.9e-11 Score=98.03 Aligned_cols=139 Identities=27% Similarity=0.293 Sum_probs=96.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
....++......++..+.+|+|+|||||.++...+-.|+ +|+|+|+++++++.++++..+.... ++|++.
T Consensus 30 ~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~---------v~f~~~ 100 (198)
T COG2263 30 LAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD---------VEFVVA 100 (198)
T ss_pred HHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCc---------eEEEEc
Confidence 345555555455567788999999999999999999985 6999999999999999999883332 299999
Q ss_pred ccccCCCCccEEEEcccccccCc-chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 212 DLESLDGKYDTVVCLDVLIHYPQ-SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 212 d~~~~~~~fD~V~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
|+.+..+.||+|+++--+--.-. ... .++....++. ..+.++.. .-+.+.+
T Consensus 101 dv~~~~~~~dtvimNPPFG~~~rhaDr-~Fl~~Ale~s--~vVYsiH~-------------------------a~~~~f~ 152 (198)
T COG2263 101 DVSDFRGKFDTVIMNPPFGSQRRHADR-PFLLKALEIS--DVVYSIHK-------------------------AGSRDFV 152 (198)
T ss_pred chhhcCCccceEEECCCCccccccCCH-HHHHHHHHhh--heEEEeec-------------------------cccHHHH
Confidence 99999999999998764432211 001 2332222211 22222211 0146788
Q ss_pred HHHHHHCCCEEEEEeeee
Q 020710 291 ERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~~ 308 (322)
++...+.|+.+...+...
T Consensus 153 ~~~~~~~G~~v~~~~~~~ 170 (198)
T COG2263 153 EKFAADLGGTVTHIERAR 170 (198)
T ss_pred HHHHHhcCCeEEEEEEEE
Confidence 889999998887765443
No 91
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.37 E-value=6.2e-12 Score=104.31 Aligned_cols=109 Identities=28% Similarity=0.346 Sum_probs=84.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.-+++.+... +..+|||+|||+|..+..+++.+. +|+++|+|+.+++.+++++...+..+ + +++..|
T Consensus 21 ~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v-------~~~~~d 89 (170)
T PF05175_consen 21 RLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-V-------EVVQSD 89 (170)
T ss_dssp HHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-E-------EEEESS
T ss_pred HHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-c-------cccccc
Confidence 4555666654 478999999999999999999854 59999999999999999999887653 2 888999
Q ss_pred cccC--CCCccEEEEcccccccCc---chHHHHHHHHHhccCCeEEE
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQ---SKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~---~~~~~~l~~l~~~~~~~~il 254 (322)
+.+. +++||+|+|+--++.-.+ .....+++...+.++++|.+
T Consensus 90 ~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 90 LFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp TTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred ccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 7654 589999999987654443 23578888888888777655
No 92
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.37 E-value=2.6e-11 Score=103.14 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=89.0
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CC
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 218 (322)
..++.+|||+|||+|.++..+++. +.+|+++|+++.|++.+++++...++..++ .++.+|+.+. .+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v-------~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNI-------VLIKGEAPEILFTINE 110 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCe-------EEEEechhhhHhhcCC
Confidence 346889999999999999988764 468999999999999999998877643323 7888888653 47
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
.||.|++... . .....+++.+.+.+++++.+.+...+. .+.+++.+.+++.|
T Consensus 111 ~~D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~-----------------------~~~~~~~~~l~~~g 162 (198)
T PRK00377 111 KFDRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL-----------------------ETVNNALSALENIG 162 (198)
T ss_pred CCCEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH-----------------------HHHHHHHHHHHHcC
Confidence 8999998542 2 225688888888777766554422111 12357778888889
Q ss_pred CEEE
Q 020710 299 WKIR 302 (322)
Q Consensus 299 f~vv 302 (322)
|+..
T Consensus 163 ~~~~ 166 (198)
T PRK00377 163 FNLE 166 (198)
T ss_pred CCeE
Confidence 8543
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=9.7e-12 Score=111.16 Aligned_cols=146 Identities=25% Similarity=0.241 Sum_probs=98.8
Q ss_pred hhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCC
Q 020710 124 LDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGE 201 (322)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 201 (322)
...+...+.+++.++..+.. .++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.+++++. .....
T Consensus 87 lipr~~te~l~~~~~~~~~~---~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~---- 158 (275)
T PRK09328 87 LIPRPETEELVEWALEALLL---KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGA---- 158 (275)
T ss_pred eeCCCCcHHHHHHHHHhccc---cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCC----
Confidence 33444455555555544332 25679999999999999999987 4789999999999999999887 22222
Q ss_pred CCCCCceEEcccccC--CCCccEEEEcccccc------cCc------------------chHHHHHHHHHhccCCeEEEE
Q 020710 202 APVMPKFEVKDLESL--DGKYDTVVCLDVLIH------YPQ------------------SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 202 ~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~~------~~~------------------~~~~~~l~~l~~~~~~~~il~ 255 (322)
++.++.+|+.+. +++||+|+++....- +.+ +....+++++.++++++|.+.
T Consensus 159 ---~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 159 ---RVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred ---cEEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 238899998654 478999999643211 111 112466777777777777665
Q ss_pred ECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 256 FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+... +...+++.+++.+.||..++.
T Consensus 236 ~e~g------------------------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 236 LEIG------------------------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred EEEC------------------------chHHHHHHHHHHhCCCceeEE
Confidence 5221 112457889999999985554
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=1.2e-11 Score=111.98 Aligned_cols=123 Identities=25% Similarity=0.253 Sum_probs=85.7
Q ss_pred hhhhcCchhHHHHHHH-HhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCC
Q 020710 124 LDIRLGHSKTVENTMQ-MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGG 200 (322)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 200 (322)
..++...+..+...+. ++... +..+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++++...+..+++
T Consensus 111 lipr~~te~lv~~~l~~~~~~~---~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i- 186 (307)
T PRK11805 111 LVPRSPIAELIEDGFAPWLEDP---PVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRV- 186 (307)
T ss_pred cCCCCchHHHHHHHHHHHhccC---CCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcE-
Confidence 3344445555555543 33322 2368999999999999999987 578999999999999999999887765444
Q ss_pred CCCCCCceEEcccccC--CCCccEEEEcccc-------------cccCc----------chHHHHHHHHHhccCCeEEEE
Q 020710 201 EAPVMPKFEVKDLESL--DGKYDTVVCLDVL-------------IHYPQ----------SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 201 ~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l-------------~~~~~----------~~~~~~l~~l~~~~~~~~il~ 255 (322)
+++++|+.+. +++||+|+++--. +|-|. +....+++.+.+.+++||.+.
T Consensus 187 ------~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 187 ------TLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------EEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 8999997543 4589999997311 12221 113466777777777776665
Q ss_pred E
Q 020710 256 F 256 (322)
Q Consensus 256 ~ 256 (322)
+
T Consensus 261 ~ 261 (307)
T PRK11805 261 V 261 (307)
T ss_pred E
Confidence 5
No 95
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.36 E-value=1.3e-11 Score=117.57 Aligned_cols=116 Identities=31% Similarity=0.421 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...+..+ ++|++
T Consensus 283 e~l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~--------v~~~~ 351 (443)
T PRK13168 283 QKMVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDN--------VTFYH 351 (443)
T ss_pred HHHHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------eEEEE
Confidence 3455666666643 356899999999999999999998899999999999999999988766532 38999
Q ss_pred cccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhccC-CeEEEEECCChhh
Q 020710 211 KDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE-KRLILSFAPKTFY 262 (322)
Q Consensus 211 ~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~il~~~~~~~~ 262 (322)
+|+.+. +++||+|++ +.|.......++.+.++.. ..++++|+|.++.
T Consensus 352 ~d~~~~l~~~~~~~~~fD~Vi~-----dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tla 406 (443)
T PRK13168 352 ANLEEDFTDQPWALGGFDKVLL-----DPPRAGAAEVMQALAKLGPKRIVYVSCNPATLA 406 (443)
T ss_pred eChHHhhhhhhhhcCCCCEEEE-----CcCCcChHHHHHHHHhcCCCeEEEEEeChHHhh
Confidence 998642 367999986 4444434566677777543 4446778777754
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.35 E-value=1.2e-11 Score=106.60 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.+..+++.+.. .++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++++...+..+ ++++
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~--------v~~~ 133 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN--------VIVI 133 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC--------eEEE
Confidence 44566666654 367899999999999999998873 359999999999999999998876532 3899
Q ss_pred EcccccC---CCCccEEEEcccccccC
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~ 233 (322)
++|+.+. .++||+|++.....+++
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~ 160 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAAGPKIP 160 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCCccccc
Confidence 9998653 46899999987766654
No 97
>PRK04266 fibrillarin; Provisional
Probab=99.35 E-value=2e-11 Score=105.48 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=92.9
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...++..+...+..++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+.+++.+. . ++.++.+
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~--------nv~~i~~ 127 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K--------NIIPILA 127 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C--------CcEEEEC
Confidence 344444332233457889999999999999999987 358999999999999887776542 1 1378888
Q ss_pred ccccC------CCCccEEEEcccccccCcc-hHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccc
Q 020710 212 DLESL------DGKYDTVVCLDVLIHYPQS-KADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAY 283 (322)
Q Consensus 212 d~~~~------~~~fD~V~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (322)
|+... ..+||+|++. ++++ ....+++++++.+++||.+.+ .+... .++- .....
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~--------~d~~----~~~~~- 189 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS--------IDVT----KDPKE- 189 (226)
T ss_pred CCCCcchhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc--------ccCc----CCHHH-
Confidence 87542 4679999853 3332 224568899988776665544 22110 0000 00001
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeee
Q 020710 284 LHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
+ .++..++++++||++++....
T Consensus 190 -~-~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 190 -I-FKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred -H-HHHHHHHHHHcCCeEEEEEcC
Confidence 1 134559999999999886544
No 98
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.6e-11 Score=108.11 Aligned_cols=104 Identities=34% Similarity=0.320 Sum_probs=80.9
Q ss_pred hcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHh
Q 020710 113 YGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 113 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~ 190 (322)
++....+++....+++..+.+++.++..+... .. +|||+|||+|..+..++..+ ++|+|+|+|+.+++.|++++
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~---~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAALALLLQL---DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred cceeeeeCCCceecCCchHHHHHHHHHhhhhc---CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 33344566667778888888888877555544 12 89999999999999999985 48999999999999999999
Q ss_pred HHhhhccCCCCCCCCCceEEcccccC-CCCccEEEEccc
Q 020710 191 EEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVCLDV 228 (322)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~~~~ 228 (322)
...++ .++ .++..|+.+. .++||+|+++--
T Consensus 155 ~~~~l-~~~-------~~~~~dlf~~~~~~fDlIVsNPP 185 (280)
T COG2890 155 ERNGL-VRV-------LVVQSDLFEPLRGKFDLIVSNPP 185 (280)
T ss_pred HHcCC-ccE-------EEEeeecccccCCceeEEEeCCC
Confidence 98876 322 5566686554 779999999864
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.34 E-value=8e-12 Score=114.48 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=84.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+.+++.+... ...+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++...+... +++..|
T Consensus 186 ~lLl~~l~~~---~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~---------~~~~~D 253 (342)
T PRK09489 186 QLLLSTLTPH---TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG---------EVFASN 253 (342)
T ss_pred HHHHHhcccc---CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---------EEEEcc
Confidence 3445555432 3568999999999999999987 3589999999999999999988776543 677778
Q ss_pred ccc-CCCCccEEEEcccccccCc---chHHHHHHHHHhccCCeEEEEE
Q 020710 213 LES-LDGKYDTVVCLDVLIHYPQ---SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~-~~~~fD~V~~~~~l~~~~~---~~~~~~l~~l~~~~~~~~il~~ 256 (322)
... .+++||+|+|+..+|+... .....+++.+.+.+++||.+.+
T Consensus 254 ~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 254 VFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 654 3788999999998876332 2356889999998766665543
No 100
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.34 E-value=1.6e-12 Score=109.25 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=97.1
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
...+.||.|+|.|+.+..++-. .-+|.-||+++..++.|++.+....... .++++..+++. .++||+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v--------~~~~~~gLQ~f~P~~~~YDlI 126 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRV--------GEFYCVGLQDFTPEEGKYDLI 126 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCE--------EEEEES-GGG----TT-EEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCc--------ceEEecCHhhccCCCCcEeEE
Confidence 4678999999999999877655 5679999999999999998765521110 17888888776 4799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
++-.++.|++|+.+..+|++++..+.++|+|.+-.+....+ ...+.... ...-.+.+.+.+++++||++++.
T Consensus 127 W~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~-----~~~~D~~D---sSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 127 WIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG-----FDEFDEED---SSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS-----EEEEETTT---TEEEEEHHHHHHHHHHCT-EEEE
T ss_pred EehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC-----CcccCCcc---CeeecCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999887777775532211100 01221111 11123678999999999999998
Q ss_pred Eeee
Q 020710 304 RGLI 307 (322)
Q Consensus 304 ~~~~ 307 (322)
.+..
T Consensus 199 ~~~Q 202 (218)
T PF05891_consen 199 EEKQ 202 (218)
T ss_dssp EEE-
T ss_pred eccc
Confidence 7655
No 101
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=106.03 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+...+++.+.. .++.+|||||||+|+++..+++. +.+|+++|+++++++.+++++...+..+ +++
T Consensus 63 ~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~--------v~~ 131 (212)
T PRK13942 63 HMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN--------VEV 131 (212)
T ss_pred HHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------eEE
Confidence 445566666653 36889999999999999988876 3689999999999999999998766432 489
Q ss_pred EEcccccC---CCCccEEEEcccccccC
Q 020710 209 EVKDLESL---DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 209 ~~~d~~~~---~~~fD~V~~~~~l~~~~ 233 (322)
+++|+... .+.||+|++...+.+++
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~~~~~~~ 159 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTAAGPDIP 159 (212)
T ss_pred EECCcccCCCcCCCcCEEEECCCcccch
Confidence 99998653 57899999988776654
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.33 E-value=4.8e-12 Score=98.08 Aligned_cols=101 Identities=29% Similarity=0.385 Sum_probs=80.4
Q ss_pred CCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 222 (322)
+.+|||+|||+|.++..+++.+ .+++|+|+++..++.+++++...+...++ +++++|+.+. +++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~-------~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRV-------EVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTE-------EEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceE-------EEEECchhhchhhccCceeEE
Confidence 4589999999999999999998 89999999999999999999988775544 8999998654 689999
Q ss_pred EEEcccccccCc------chHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQ------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+++--+..... .....+++++.++++++|++.+
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999877654321 1246789999998887776654
No 103
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.31 E-value=1.7e-11 Score=103.89 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
..+|||||||+|.++..+++. ..+|+|+|+++.|++.|+++....+..+ +.++++|+.++ ++.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n--------i~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN--------LHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC--------EEEEccCHHHHHHhhCCCCce
Confidence 568999999999999999987 5689999999999999999887765532 48999998642 4689
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
|.|+++....+..... ...+++.+++++++||.+.+.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 9999765443322110 147899999988777766553
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.31 E-value=2e-11 Score=111.88 Aligned_cols=123 Identities=24% Similarity=0.209 Sum_probs=91.7
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||+|||+|.++..++..+.+++|+|+++.|++.+++++...+..+ +.+.++|+.++ +++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~--------i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED--------FFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC--------CeEEecchhcCCcccCCCCEE
Confidence 467899999999999998888889999999999999999999988776654 27889998776 5789999
Q ss_pred EEcccccc---c----CcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 224 VCLDVLIH---Y----PQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 224 ~~~~~l~~---~----~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
++...+.. . ..+....+++++.+.+++||.+.+ .+. ..++.++++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~---------------------------~~~~~~~~~ 305 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT---------------------------RIDLESLAE 305 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC---------------------------CCCHHHHHh
Confidence 99643211 1 112246889999988766654433 111 125667889
Q ss_pred HCCCEEEEEe
Q 020710 296 KVGWKIRKRG 305 (322)
Q Consensus 296 ~aGf~vv~~~ 305 (322)
++|| ++...
T Consensus 306 ~~g~-i~~~~ 314 (329)
T TIGR01177 306 DAFR-VVKRF 314 (329)
T ss_pred hcCc-chhee
Confidence 9999 76643
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=99.30 E-value=1.3e-11 Score=108.07 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
...+|||+|||+|.++..++.+ +.+|+++|+|+.|++.++++.. + ++++++|+.+. +.+||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~-------v~~v~~D~~e~~~~~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------E-------AEWITSDVFEFESNEKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------C-------CEEEECchhhhcccCCCcEE
Confidence 4579999999999999888775 5689999999999999987642 1 28899998875 5789999
Q ss_pred EEcccccccCcch
Q 020710 224 VCLDVLIHYPQSK 236 (322)
Q Consensus 224 ~~~~~l~~~~~~~ 236 (322)
+++..+.|.+...
T Consensus 131 IsNPPF~~l~~~d 143 (279)
T PHA03411 131 ISNPPFGKINTTD 143 (279)
T ss_pred EEcCCccccCchh
Confidence 9999998876543
No 106
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=3.3e-11 Score=106.11 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=95.3
Q ss_pred hhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 126 IRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+...+.+++.++.++... ..+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------- 135 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------- 135 (251)
T ss_pred CCccHHHHHHHHHHhhccc--CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence 3444556666666655432 13458999999999999999876 56899999999999999999876542
Q ss_pred CCCceEEcccccC-----CCCccEEEEccccc------ccCcc------------------hHHHHHHHHHhccCCeEEE
Q 020710 204 VMPKFEVKDLESL-----DGKYDTVVCLDVLI------HYPQS------------------KADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 204 ~~~~~~~~d~~~~-----~~~fD~V~~~~~l~------~~~~~------------------~~~~~l~~l~~~~~~~~il 254 (322)
+|+++|+.+. .++||+|+++--.. .++++ .+..+++.+.++++++|.+
T Consensus 136 ---~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l 212 (251)
T TIGR03704 136 ---TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHL 212 (251)
T ss_pred ---EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 6888887653 36799999975432 11111 0235566666666665555
Q ss_pred EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
.+.... -..+++.+++++.||+....
T Consensus 213 ~l~~~~------------------------~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 213 LVETSE------------------------RQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred EEEECc------------------------chHHHHHHHHHHCCCCceee
Confidence 442211 12457888888999875543
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.29 E-value=3.4e-11 Score=103.52 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=72.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.....+++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...+..+ +++..+
T Consensus 65 ~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~--------v~~~~~ 133 (212)
T PRK00312 65 YMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHN--------VSVRHG 133 (212)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCc--------eEEEEC
Confidence 344555555543 367899999999999999888887789999999999999999998765543 388999
Q ss_pred ccccC---CCCccEEEEcccccccC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~ 233 (322)
|..+. .++||+|++...+++++
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~~ 158 (212)
T PRK00312 134 DGWKGWPAYAPFDRILVTAAAPEIP 158 (212)
T ss_pred CcccCCCcCCCcCEEEEccCchhhh
Confidence 87553 47899999988776654
No 108
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.26 E-value=6.1e-11 Score=108.01 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+++.+.+++... ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...++.+ ++|+++|
T Consensus 161 l~~~v~~~l~~~---~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~--------v~~~~~D 229 (315)
T PRK03522 161 LYATARDWVREL---PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTN--------VQFQALD 229 (315)
T ss_pred HHHHHHHHHHhc---CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------eEEEEcC
Confidence 444455555432 46899999999999999999999999999999999999999998776632 3899999
Q ss_pred cccC----CCCccEEEEcccccccCcchH-HHHHHHHHhccC-CeEEEEECCChhh
Q 020710 213 LESL----DGKYDTVVCLDVLIHYPQSKA-DGMIAHLASLAE-KRLILSFAPKTFY 262 (322)
Q Consensus 213 ~~~~----~~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~~-~~~il~~~~~~~~ 262 (322)
+.+. .+.||+|++. .|...+ ..+++.+.+... .-++++|.|.++.
T Consensus 230 ~~~~~~~~~~~~D~Vv~d-----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~ 280 (315)
T PRK03522 230 STQFATAQGEVPDLVLVN-----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMA 280 (315)
T ss_pred HHHHHHhcCCCCeEEEEC-----CCCCCccHHHHHHHHHcCCCeEEEEECCcccch
Confidence 8764 3579999975 333222 345555555433 3345567776654
No 109
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.26 E-value=8.8e-11 Score=101.34 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
...+|||+|||+|..+..++.+ . +++++||+++.|.+.|++..+.+.+..|+ .++++|+.+. ..+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri-------~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERI-------QVIEADIKEFLKALVFASF 116 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhce-------eEehhhHHHhhhccccccc
Confidence 4789999999999999999988 3 78999999999999999999998888776 9999999876 3569
Q ss_pred cEEEEcccccccCcc----------------hHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQS----------------KADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~----------------~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|+|+--+.-.... .++++++...++++++|.+.+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999998654322221 2567777777777666655543
No 110
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.25 E-value=8.8e-11 Score=98.29 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=102.1
Q ss_pred eEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------C
Q 020710 151 AVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----------D 217 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------~ 217 (322)
+|||||||||..+.++++. ..+..-.|+++..+...+....+.+..+-. .-+..|+... .
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-------~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-------PPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-------CCeEeecCCCCCccccccccCC
Confidence 5999999999999999998 678889999999988888887777665522 3445565443 3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECCCh----hhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAPKT----FYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+.||.|+|.+++|-+|.+..+.+++...++++++|++ .+.|-. +..+-...+...+... ...--+.+.+++.+
T Consensus 101 ~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r--dp~~GiRD~e~v~~ 178 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR--DPEWGIRDIEDVEA 178 (204)
T ss_pred CCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC--CCCcCccCHHHHHH
Confidence 4899999999998888888899999999987665544 443311 1111112222222111 11122568899999
Q ss_pred HHHHCCCEEEE
Q 020710 293 ALQKVGWKIRK 303 (322)
Q Consensus 293 ~l~~aGf~vv~ 303 (322)
+..++||+.++
T Consensus 179 lA~~~GL~l~~ 189 (204)
T PF06080_consen 179 LAAAHGLELEE 189 (204)
T ss_pred HHHHCCCccCc
Confidence 99999998765
No 111
>PTZ00146 fibrillarin; Provisional
Probab=99.24 E-value=9.2e-11 Score=103.77 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=93.2
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
.+++...++.-+......++.+|||+|||+|.++.++++. + ..|++||+|+.|++...+.+... .++
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----------~NI 183 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----------PNI 183 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----------CCC
Confidence 3455556655555544567889999999999999999988 3 47999999998765555444321 113
Q ss_pred ceEEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccCCCCCCc
Q 020710 207 KFEVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELFPGPSKA 279 (322)
Q Consensus 207 ~~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~ 279 (322)
.++..|+... .+.||+|++... .++ ....++.++++.+++++.+.+. .... .... ..
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~pd-q~~il~~na~r~LKpGG~~vI~ika~~----------id~g--~~ 247 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVA---QPD-QARIVALNAQYFLKNGGHFIISIKANC----------IDST--AK 247 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCC---Ccc-hHHHHHHHHHHhccCCCEEEEEEeccc----------cccC--CC
Confidence 7888887542 468999998764 233 2445666788877766655442 1110 0000 00
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.... ++ +++ ++|+++||++++...
T Consensus 248 pe~~-f~-~ev-~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 248 PEVV-FA-SEV-QKLKKEGLKPKEQLT 271 (293)
T ss_pred HHHH-HH-HHH-HHHHHcCCceEEEEe
Confidence 0110 12 345 889999999887543
No 112
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.23 E-value=1.9e-10 Score=104.63 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=95.2
Q ss_pred CCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCC---CCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNG---GEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~------- 216 (322)
++.+|||+|||-|..+......+ ..++|+|||...|+.|+++........+. ...+ ...|+.+|....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f-~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF-IAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC-EEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccc-hhheeccccccchhhhhcc
Confidence 57899999999999888887775 46999999999999999999432211100 0001 126778876542
Q ss_pred C--CCccEEEEcccccccC-c-chHHHHHHHHHhccCCeEEEEE-CCCh-hhHHHHHH----------------------
Q 020710 217 D--GKYDTVVCLDVLIHYP-Q-SKADGMIAHLASLAEKRLILSF-APKT-FYYDLLKR---------------------- 268 (322)
Q Consensus 217 ~--~~fD~V~~~~~l~~~~-~-~~~~~~l~~l~~~~~~~~il~~-~~~~-~~~~~~~~---------------------- 268 (322)
+ .+||+|.|..+|||.= . +....+|+.+.+.+++||+++. .++. .....+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3 5999999999999864 3 3356799999998877776543 2322 11000111
Q ss_pred -----hhc----cCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 269 -----VGE----LFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 269 -----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
.|. .+.........|+...+.+.+++.+.||+++..
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~ 265 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEK 265 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEe
Confidence 000 000111233445668899999999999999864
No 113
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.22 E-value=5.3e-10 Score=97.40 Aligned_cols=164 Identities=16% Similarity=0.223 Sum_probs=121.5
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+...+..+... ..+.+||||.||.|+......+. ..++.-.|.|+..|+..++..++.++.+.+ +|
T Consensus 122 ~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~-------~f 192 (311)
T PF12147_consen 122 LIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIA-------RF 192 (311)
T ss_pred HHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccce-------EE
Confidence 344444455443 36789999999999988777665 247999999999999999999999988744 89
Q ss_pred EEcccccC------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCC-CC-Cc
Q 020710 209 EVKDLESL------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPG-PS-KA 279 (322)
Q Consensus 209 ~~~d~~~~------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~-~~ 279 (322)
+++|+.+. +...|+++.+..++.++|.. +...++-+.+++.++++++++...|+... +-+...+.. .. ..
T Consensus 193 ~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-e~IAr~LtsHr~g~~ 271 (311)
T PF12147_consen 193 EQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-EMIARVLTSHRDGKA 271 (311)
T ss_pred EecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-HHHHHHHhcccCCCc
Confidence 99998775 56789999999999999855 46678888888899999988877776653 222222211 00 00
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.-....+..|+.++++.+||+-+....
T Consensus 272 WvMRrRsq~EmD~Lv~~aGF~K~~q~I 298 (311)
T PF12147_consen 272 WVMRRRSQAEMDQLVEAAGFEKIDQRI 298 (311)
T ss_pred eEEEecCHHHHHHHHHHcCCchhhhee
Confidence 011134899999999999998665443
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.22 E-value=3.4e-10 Score=104.22 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=103.4
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+++.+... .+..+||||||+|.++..+++. ...++|+|+++.|++.+.+++...++.+ +.++++|+
T Consensus 113 ~~~~~~~~~---~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N--------V~~i~~DA 181 (390)
T PRK14121 113 NFLDFISKN---QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN--------LLIINYDA 181 (390)
T ss_pred HHHHHhcCC---CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEECCH
Confidence 445555432 4678999999999999999988 5689999999999999999988776654 48899998
Q ss_pred ccC-----CCCccEEEEcccccccCcc----hHHHHHHHHHhccCCeEEEEECC-ChhhHHH-HHHhhccCCCCC-Cccc
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQS----KADGMIAHLASLAEKRLILSFAP-KTFYYDL-LKRVGELFPGPS-KATR 281 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~----~~~~~l~~l~~~~~~~~il~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~ 281 (322)
..+ ++++|.|++....-|...+ ....+++.+++++++||.+.+.. ...+..+ ...+........ ....
T Consensus 182 ~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~~ 261 (390)
T PRK14121 182 RLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKKN 261 (390)
T ss_pred HHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecccC
Confidence 543 7899999975433221111 12578999999988777665533 2222222 222222110000 0000
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
....-..++++-..+.|-.+-.....
T Consensus 262 ~~~~i~TkyE~r~~~~G~~Iy~l~~~ 287 (390)
T PRK14121 262 AQLEVSSKYEDRWKKQNKDIYDLRIY 287 (390)
T ss_pred CCCCCCCHHHHHHHHCCCCEEEEEEE
Confidence 11112347888888899877654443
No 115
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=6.9e-11 Score=96.99 Aligned_cols=124 Identities=11% Similarity=-0.012 Sum_probs=82.1
Q ss_pred EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCC
Q 020710 174 SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK 250 (322)
Q Consensus 174 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~ 250 (322)
+|+|+|+.|++.|+++........ ..+++|+++|+.++ +++||+|++..+++|+++ ...+++++++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~-----~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC-----YKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC-----CCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCc
Confidence 489999999999987765322100 01248999999876 578999999999999988 55999999999887
Q ss_pred eEEEEE---CCC-hhhHHHH---------HHhhccCCCCCCccc-------cccCCHHHHHHHHHHCCCEEEEEee
Q 020710 251 RLILSF---APK-TFYYDLL---------KRVGELFPGPSKATR-------AYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 251 ~~il~~---~~~-~~~~~~~---------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
||.+.+ ... ....... ...+. +... .... ..+.+.+++.++|+++||+.+....
T Consensus 74 GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 74 GSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVAT-VYDL-AKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred CeEEEEEECCCCChHHHHHHHHHHccchHhhhhH-HhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 775543 221 1111101 01111 1111 1111 1246899999999999999876443
No 116
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.8e-10 Score=96.58 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++.++++.+... ++.+|||||||+|+.+..|++...+|+.+|..+...+.|++++...+..| +.+.++
T Consensus 59 ~~vA~m~~~L~~~---~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n--------V~v~~g 127 (209)
T COG2518 59 HMVARMLQLLELK---PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN--------VTVRHG 127 (209)
T ss_pred HHHHHHHHHhCCC---CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc--------eEEEEC
Confidence 4667777887765 78999999999999999999997799999999999999999999988765 489999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHH
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
|...- .+.||.|++......+|+ .++++|+
T Consensus 128 DG~~G~~~~aPyD~I~Vtaaa~~vP~----~Ll~QL~ 160 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVTAAAPEVPE----ALLDQLK 160 (209)
T ss_pred CcccCCCCCCCcCEEEEeeccCCCCH----HHHHhcc
Confidence 97653 589999999999888877 6676665
No 117
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.18 E-value=4.3e-11 Score=101.08 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=71.2
Q ss_pred eEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcc
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLD 227 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~ 227 (322)
.++|||||+|..++.++++-.+|+|+|+|+.|++.|+++....-... ...+...+..++ +++.|+|+|..
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t-------~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHT-------PSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccC-------CccccccccccccCCCcceeeehhhh
Confidence 89999999999899999998889999999999999988765432221 113333333443 78999999999
Q ss_pred cccccCcchHHHHHHHHHhcc-CCeEEE
Q 020710 228 VLIHYPQSKADGMIAHLASLA-EKRLIL 254 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~-~~~~il 254 (322)
++|++. ++.+++.+.+++ ++|+++
T Consensus 109 a~HWFd---le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 109 AVHWFD---LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hHHhhc---hHHHHHHHHHHcCCCCCEE
Confidence 998876 558888888875 444344
No 118
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=9.8e-11 Score=97.97 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=115.8
Q ss_pred CCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
...++|||||.|.....|...+. +++-+|.|-.|++.++.- +..++.. ...++|-+.+ ++++|+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~---------~~~v~DEE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIET---------SYFVGDEEFLDFKENSVDLII 142 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEE---------EEEecchhcccccccchhhhh
Confidence 56899999999999999998865 599999999999988643 2233322 6778887766 78999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEE---ECCChhhHH-------HHHHhhccCCCCCCccccccCCHHHHHHHH
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILS---FAPKTFYYD-------LLKRVGELFPGPSKATRAYLHAEADVERAL 294 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (322)
++..+|+..+ +...+.+++..+++.++++ +...+++.- .+++.+.+-+..+ .+....++..+|
T Consensus 143 sSlslHW~Nd--LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiS-----Pf~qvrDiG~LL 215 (325)
T KOG2940|consen 143 SSLSLHWTND--LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHIS-----PFTQVRDIGNLL 215 (325)
T ss_pred hhhhhhhhcc--CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcC-----hhhhhhhhhhHH
Confidence 9999988877 7788899988777766553 344444321 2233333333222 133567999999
Q ss_pred HHCCCEEEEEeeeecceehhhhhhhc
Q 020710 295 QKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 295 ~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
.++||....++.....+.|.+.++.+
T Consensus 216 ~rAGF~m~tvDtDEi~v~Yp~mfeLm 241 (325)
T KOG2940|consen 216 TRAGFSMLTVDTDEIVVGYPRMFELM 241 (325)
T ss_pred hhcCcccceecccceeecCchHHHHH
Confidence 99999999998888888888887764
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.15 E-value=3.7e-10 Score=98.40 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=84.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.++... .++.+|||+|||+|+.+..++.. +.+|+++|+++++++.|++++...+..+++ +++.+
T Consensus 57 g~~L~~l~~~--~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i-------~~~~g 127 (234)
T PLN02781 57 GLFLSMLVKI--MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKI-------NFIQS 127 (234)
T ss_pred HHHHHHHHHH--hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEc
Confidence 3444444433 35789999999999998888765 468999999999999999999998876655 89999
Q ss_pred ccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 212 DLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 212 d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
|+.+. .++||+|++. ...+....++..+.+++++|+++.+..
T Consensus 128 da~~~L~~l~~~~~~~~fD~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 128 DALSALDQLLNNDPKPEFDFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred cHHHHHHHHHhCCCCCCCCEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98653 3689999873 223446678888888888888777643
No 120
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=2.6e-10 Score=94.43 Aligned_cols=106 Identities=20% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+++++.+.. .++.+|||+|||+|.++..+++++.+|+++|+++.|++.+++++... .+ ++++.+|+.
T Consensus 3 ~~i~~~~~~---~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~-------v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAANL---RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DN-------LTVIHGDAL 69 (169)
T ss_pred HHHHHhcCC---CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CC-------EEEEECchh
Confidence 344555443 35679999999999999999999889999999999999999887541 12 388999988
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+. +..||.|+++--+ |+..+.+..+++.. ....++++++
T Consensus 70 ~~~~~~~~~d~vi~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPY-NISTPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred cCCccccCCCEEEECCCc-ccHHHHHHHHHhcC--CCcceEEEEE
Confidence 76 3469999986554 44332233333321 1235566655
No 121
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.14 E-value=5.9e-10 Score=106.01 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+++.+.+++.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|++++...+..+ ++|+.+|
T Consensus 280 l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~n--------v~~~~~d 348 (431)
T TIGR00479 280 LVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN--------VEFLAGT 348 (431)
T ss_pred HHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCc--------eEEEeCC
Confidence 34455555532 246799999999999999999988899999999999999999988766532 4899999
Q ss_pred cccC-------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE-EEEECCChh
Q 020710 213 LESL-------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL-ILSFAPKTF 261 (322)
Q Consensus 213 ~~~~-------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~-il~~~~~~~ 261 (322)
+.+. +++||+|++ ..|... ...+++.+.++.++++ +++|.|.++
T Consensus 349 ~~~~l~~~~~~~~~~D~vi~-----dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tl 401 (431)
T TIGR00479 349 LETVLPKQPWAGQIPDVLLL-----DPPRKGCAAEVLRTIIELKPERIVYVSCNPATL 401 (431)
T ss_pred HHHHHHHHHhcCCCCCEEEE-----CcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 8652 357999995 333322 2466777766544443 345655554
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=8.2e-10 Score=94.57 Aligned_cols=91 Identities=18% Similarity=0.093 Sum_probs=67.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||||||+|.++..+++. +.+|+|||+++ |. ... .+.++++|+.+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~--------~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIV--------GVDFLQGDFRDELVLKALL 110 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCC--------CcEEEecCCCChHHHHHHH
Confidence 46789999999999999999887 35899999988 21 111 138899998762
Q ss_pred ----CCCccEEEEcccccccCcch---------HHHHHHHHHhccCCeEEEEE
Q 020710 217 ----DGKYDTVVCLDVLIHYPQSK---------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~~~~~~---------~~~~l~~l~~~~~~~~il~~ 256 (322)
+++||+|++..+.++...+. ...+++.+.+++++||.+.+
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57899999987765543321 24678888888877766554
No 123
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.13 E-value=2.9e-09 Score=87.46 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=92.1
Q ss_pred CCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKY 220 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~f 220 (322)
+.++.+++|||||||..+..++.. .++|+++|-++++++..++++...+.++ +..+.+|+.+. + .+|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n--------~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN--------LEVVEGDAPEALPDLPSP 103 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc--------EEEEeccchHhhcCCCCC
Confidence 347899999999999999999944 6789999999999999999999988554 48899998775 2 279
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC-
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW- 299 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf- 299 (322)
|.|+.... .. +..+++.+...+++++-+..+--+ ..+....-+++++.|+
T Consensus 104 daiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~nait-----------------------lE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 104 DAIFIGGG-GN-----IEEILEAAWERLKPGGRLVANAIT-----------------------LETLAKALEALEQLGGR 154 (187)
T ss_pred CEEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEeec-----------------------HHHHHHHHHHHHHcCCc
Confidence 99999887 32 557777777765555444332111 1123456678888888
Q ss_pred EEEEEee
Q 020710 300 KIRKRGL 306 (322)
Q Consensus 300 ~vv~~~~ 306 (322)
++++...
T Consensus 155 ei~~v~i 161 (187)
T COG2242 155 EIVQVQI 161 (187)
T ss_pred eEEEEEe
Confidence 6666543
No 124
>PRK04457 spermidine synthase; Provisional
Probab=99.13 E-value=5.7e-10 Score=98.82 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=82.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+|||||||+|.++..+++. +.+++++|+++++++.|++.+.......+ ++++.+|+.+. .++||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~r-------v~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGER-------FEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCc-------eEEEECCHHHHHHhCCCCCC
Confidence 4678999999999999999876 57899999999999999998754332223 38899997543 57899
Q ss_pred EEEEcccc-cccCcch-HHHHHHHHHhccCCeEEEEEC---CChhhHHHHHHhhccC
Q 020710 222 TVVCLDVL-IHYPQSK-ADGMIAHLASLAEKRLILSFA---PKTFYYDLLKRVGELF 273 (322)
Q Consensus 222 ~V~~~~~l-~~~~~~~-~~~~l~~l~~~~~~~~il~~~---~~~~~~~~~~~~~~~~ 273 (322)
+|++...- ..++... ...+++.+++.++++|++.++ ........+..+...|
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F 195 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSF 195 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhc
Confidence 99975311 1222211 258999999988777766552 2222334444444444
No 125
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.12 E-value=7.9e-10 Score=93.84 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=76.3
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++...+..+ ++++.+|+
T Consensus 31 ~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~--------v~~~~~d~ 99 (196)
T PRK07402 31 LLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN--------VEVIEGSA 99 (196)
T ss_pred HHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC--------eEEEECch
Confidence 34455432 35789999999999999999865 5789999999999999999988765532 38888887
Q ss_pred ccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 214 ESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 214 ~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.+. ...+|.|+... . .....+++.+.+.+++||.+.+
T Consensus 100 ~~~~~~~~~~~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEE
Confidence 542 34568776432 1 1256889999888777765554
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.5e-10 Score=100.58 Aligned_cols=107 Identities=26% Similarity=0.323 Sum_probs=79.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+-+++.+... ...+|||+|||.|.++..+++.. .+++-+|+|..+++.+++++..++..+ ..+...|
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~--------~~v~~s~ 216 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN--------TEVWASN 216 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc--------cEEEEec
Confidence 4455666554 45599999999999999999984 589999999999999999999887654 1355566
Q ss_pred ccc-CCCCccEEEEcccccccCc---chHHHHHHHHHhccCCeE
Q 020710 213 LES-LDGKYDTVVCLDVLIHYPQ---SKADGMIAHLASLAEKRL 252 (322)
Q Consensus 213 ~~~-~~~~fD~V~~~~~l~~~~~---~~~~~~l~~l~~~~~~~~ 252 (322)
..+ ..++||+|+|+--+|-=.+ ....++++..++.+..||
T Consensus 217 ~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 217 LYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred ccccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 544 4669999999998853221 112478888887665444
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.11 E-value=4.2e-10 Score=96.87 Aligned_cols=137 Identities=23% Similarity=0.316 Sum_probs=89.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc---cCCCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE---SLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~fD~V~ 224 (322)
...++||||+|.|..+..++..-.+|++.|.|+.|....+++ .|.+.|.. +.+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----------------g~~vl~~~~w~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----------------GFTVLDIDDWQQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----------------CCeEEehhhhhccCCceEEEe
Confidence 467899999999999999999888899999999997665543 23333333 3367899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEE---CCChhhHHHHH----HhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSF---APKTFYYDLLK----RVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
|.++|....+|. .+|+.+++.++++|++++ .|-..+-+... ...+.++... ..+--....+-+.++.+
T Consensus 157 cLNvLDRc~~P~--~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g---~~~E~~v~~l~~v~~p~ 231 (265)
T PF05219_consen 157 CLNVLDRCDRPL--TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKG---ATFEEQVSSLVNVFEPA 231 (265)
T ss_pred ehhhhhccCCHH--HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCC---CcHHHHHHHHHHHHHhc
Confidence 999999888876 999999987655554432 23222111110 1111111100 11111233444889999
Q ss_pred CCEEEEEee
Q 020710 298 GWKIRKRGL 306 (322)
Q Consensus 298 Gf~vv~~~~ 306 (322)
||+++....
T Consensus 232 GF~v~~~tr 240 (265)
T PF05219_consen 232 GFEVERWTR 240 (265)
T ss_pred CCEEEEEec
Confidence 999987543
No 128
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.10 E-value=4.2e-10 Score=95.93 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=71.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..++.++++.+.. .++.+|||||||+|+++..++.. + .+|++||+.+..++.|++++...+..+ +.
T Consensus 58 P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n--------v~ 126 (209)
T PF01135_consen 58 PSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN--------VE 126 (209)
T ss_dssp HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS--------EE
T ss_pred HHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc--------ee
Confidence 3456777777774 47899999999999999999887 3 369999999999999999999877654 48
Q ss_pred eEEcccccC---CCCccEEEEcccccccCc
Q 020710 208 FEVKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 208 ~~~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
++++|.... .+.||.|++......+|.
T Consensus 127 ~~~gdg~~g~~~~apfD~I~v~~a~~~ip~ 156 (209)
T PF01135_consen 127 VVVGDGSEGWPEEAPFDRIIVTAAVPEIPE 156 (209)
T ss_dssp EEES-GGGTTGGG-SEEEEEESSBBSS--H
T ss_pred EEEcchhhccccCCCcCEEEEeeccchHHH
Confidence 999997653 578999999988876654
No 129
>PRK00811 spermidine synthase; Provisional
Probab=99.10 E-value=9.1e-10 Score=98.66 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+||+||||+|..+..++++ + .+|++||+++.+++.+++.+....... ..-.+++++.+|+... .++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~---~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA---YDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc---ccCCceEEEECchHHHHhhCCCccc
Confidence 4679999999999999999887 4 479999999999999999886532100 0012238899997653 57899
Q ss_pred EEEEcccccccCcchH--HHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
+|++...-.+.+...+ ..+++.+++.++++|++.+.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9998654333222222 57888999988777776653
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.10 E-value=7.3e-10 Score=111.04 Aligned_cols=136 Identities=19% Similarity=0.121 Sum_probs=95.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+|||+|||+|.++..++..|+ +|++||+|+.+++.+++++..+++. +++ +|+++|+.+. .++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v-------~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQH-------RLIQADCLAWLKEAREQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccce-------EEEEccHHHHHHHcCCCcC
Confidence 468999999999999999999876 5999999999999999999887764 333 8999997653 57899
Q ss_pred EEEEccccc-------ccC--cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 222 TVVCLDVLI-------HYP--QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 222 ~V~~~~~l~-------~~~--~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+|++.--.. ... ......+++.+.+++++||++.+..+.. . .. ...+
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~--------------------~--~~--~~~~ 666 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR--------------------G--FK--MDEE 666 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc--------------------c--CC--hhHH
Confidence 999853210 000 0114566777777776666665432210 0 01 1267
Q ss_pred HHHHCCCEEEEEeeeecceehh
Q 020710 293 ALQKVGWKIRKRGLITTQFYFA 314 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~~~~~~f~ 314 (322)
++.++|+++...+......-|.
T Consensus 667 ~~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 667 GLAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred HHHhCCCeEEEEecCCCCCCCC
Confidence 7888999887766555544443
No 131
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.08 E-value=1e-09 Score=102.15 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
++.+|||+|||+|.++..++..+.+|+|||+++.+++.|++++...+..+ ++|.++|+.+. .++||+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~--------~~~~~~d~~~~~~~~~~~~D~v 304 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN--------LSFAALDSAKFATAQMSAPELV 304 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEECCHHHHHHhcCCCCCEE
Confidence 45799999999999999999888899999999999999999998776532 38999998653 2569999
Q ss_pred EEcccccccCcch-HHHHHHHHHhccC-CeEEEEECCChhhH
Q 020710 224 VCLDVLIHYPQSK-ADGMIAHLASLAE-KRLILSFAPKTFYY 263 (322)
Q Consensus 224 ~~~~~l~~~~~~~-~~~~l~~l~~~~~-~~~il~~~~~~~~~ 263 (322)
++.- |... ...+++.+.++.+ .-+++++.|.++.+
T Consensus 305 i~DP-----Pr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaR 341 (374)
T TIGR02085 305 LVNP-----PRRGIGKELCDYLSQMAPKFILYSSCNAQTMAK 341 (374)
T ss_pred EECC-----CCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHH
Confidence 9753 3222 2356666666543 34456777776643
No 132
>PLN02672 methionine S-methyltransferase
Probab=99.07 E-value=9.4e-10 Score=112.74 Aligned_cols=116 Identities=20% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHH
Q 020710 111 KIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 111 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~ 188 (322)
.+|+....+++....+|...+.+++. +...... ..++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 44555555666666777666666665 3332111 113468999999999999999987 3689999999999999999
Q ss_pred HhHHhhhcc--------CCCCCCCCCceEEcccccC-C---CCccEEEEccc
Q 020710 189 KAEEELLAD--------NGGEAPVMPKFEVKDLESL-D---GKYDTVVCLDV 228 (322)
Q Consensus 189 ~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~-~---~~fD~V~~~~~ 228 (322)
++..+++.. ..+....+++|+++|+.+. . .+||+|+++--
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 997654320 0000011349999998764 2 36999999764
No 133
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=9e-10 Score=103.51 Aligned_cols=118 Identities=31% Similarity=0.410 Sum_probs=96.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++... ++.+|||+-||.|.++..|++...+|+|+|+++++++.|+++++.+++.| + .|+.
T Consensus 279 ekl~~~a~~~~~~~---~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~-------~f~~ 347 (432)
T COG2265 279 EKLYETALEWLELA---GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-V-------EFIA 347 (432)
T ss_pred HHHHHHHHHHHhhc---CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-E-------EEEe
Confidence 45667777777764 56899999999999999999999999999999999999999999998876 3 8999
Q ss_pred cccccC------CCCccEEEEcccccccCcchHH-HHHHHHHhccC-CeEEEEECCChhhHH
Q 020710 211 KDLESL------DGKYDTVVCLDVLIHYPQSKAD-GMIAHLASLAE-KRLILSFAPKTFYYD 264 (322)
Q Consensus 211 ~d~~~~------~~~fD~V~~~~~l~~~~~~~~~-~~l~~l~~~~~-~~~il~~~~~~~~~~ 264 (322)
+|+++. ...+|+|+. ..|...+. .+++.+.+..+ .-++++|+|.++..+
T Consensus 348 ~~ae~~~~~~~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRD 404 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVV-----DPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARD 404 (432)
T ss_pred CCHHHHhhhccccCCCCEEEE-----CCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 999886 257899984 66665554 88888888754 446889999887644
No 134
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.06 E-value=1.2e-09 Score=81.38 Aligned_cols=97 Identities=32% Similarity=0.398 Sum_probs=73.9
Q ss_pred eEEEECCCcccchHHHHh-cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEEE
Q 020710 151 AVCDAGCGTGSLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVC 225 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~ 225 (322)
+|+|+|||.|.++..+++ .+.+++++|+++.+++.+++....... ..+.+...|..+. .++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--------DNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--------cceEEEEcChhhhccccCCceEEEEE
Confidence 589999999999999988 467899999999999988853322211 1237888887664 468999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
..+++++ ......+++.+.+.+++++++.+
T Consensus 73 ~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 73 DPPLHHL-VEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred ccceeeh-hhHHHHHHHHHHHHcCCCCEEEE
Confidence 9999884 22356888888887766666554
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=8e-10 Score=100.23 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
+...+++.+.. .++.+|||||||+|.++..+++. + .+|+++|+++.|++.|++++...+..+ +.++
T Consensus 68 l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n--------V~~i 136 (322)
T PRK13943 68 LMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN--------VIFV 136 (322)
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--------EEEE
Confidence 34455555543 35789999999999999999886 2 369999999999999999988766532 3788
Q ss_pred EcccccC---CCCccEEEEcccccccCc
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
++|+... .+.||+|++...+.++++
T Consensus 137 ~gD~~~~~~~~~~fD~Ii~~~g~~~ip~ 164 (322)
T PRK13943 137 CGDGYYGVPEFAPYDVIFVTVGVDEVPE 164 (322)
T ss_pred eCChhhcccccCCccEEEECCchHHhHH
Confidence 8887553 367999999877666543
No 136
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.06 E-value=1.5e-09 Score=92.22 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+||||||++|+.+.++++. +.+|+.+|++++..+.|++.+...+..+++ +++.+|+.+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I-------~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRI-------EVIEGDALEVLPELANDG 117 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGE-------EEEES-HHHHHHHHHHTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcE-------EEEEeccHhhHHHHHhcc
Confidence 4789999999999999999976 679999999999999999999999887766 9999998653
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
.++||+|+.-. .......+++.+.+++++|++|.+..-
T Consensus 118 ~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 118 EEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred CCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 25799999633 334467888888888888888877543
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=99.04 E-value=2.8e-09 Score=91.34 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCeEEEECCCcccchHHHHhc-----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
+.+|||+|||+|.++..++++ ..+|+++|+++.+++.|+++... +.++..|+... +++||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-------------~~~~~~D~~~~~~~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-------------ATWINADALTTEFDTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-------------CEEEEcchhcccccCCcc
Confidence 679999999999999988864 45899999999999999977532 27888998654 67899
Q ss_pred EEEEcccccccC--c--------chHHHHHHHHHhccCCeEE
Q 020710 222 TVVCLDVLIHYP--Q--------SKADGMIAHLASLAEKRLI 253 (322)
Q Consensus 222 ~V~~~~~l~~~~--~--------~~~~~~l~~l~~~~~~~~i 253 (322)
+|+++--+.-.. + .....+++...+++++|.+
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999987654222 1 1134577777777777775
No 138
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=3.6e-09 Score=100.36 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.+++++...+... .++++|+.++ .++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~---------~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKA---------TVIVGDARDPAQWWDGQP 313 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCe---------EEEEcCcccchhhcccCC
Confidence 467899999999999999999873 589999999999999999998876543 7889998754 367
Q ss_pred ccEEEEcc------cccccCc------ch--------HHHHHHHHHhccCCeEEEEECCC
Q 020710 220 YDTVVCLD------VLIHYPQ------SK--------ADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 220 fD~V~~~~------~l~~~~~------~~--------~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
||.|++.. ++.+-|+ +. ..++++.+.+++++||.+.+...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99999532 1221111 10 23678888888877776665443
No 139
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=4.6e-09 Score=100.17 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+ +++.++|+... +++||
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~--------v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI--------IETIEGDARSFSPEEQPD 320 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe--------EEEEeCcccccccCCCCC
Confidence 36789999999999999888875 4589999999999999999998877642 38889998765 56899
Q ss_pred EEEEc----c--cccccC-------cch-------HHHHHHHHHhccCCeEEEEECCChh
Q 020710 222 TVVCL----D--VLIHYP-------QSK-------ADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 222 ~V~~~----~--~l~~~~-------~~~-------~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
+|++- . ++..-| .+. -..++..+.+.+++||++.+...+.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99962 1 221111 111 1357888888888888776655444
No 140
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=6.4e-09 Score=98.87 Aligned_cols=106 Identities=23% Similarity=0.252 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+..+ +.++++|+...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~--------v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS--------IKILAADSRNLLELKPQW 322 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe--------EEEEeCChhhcccccccc
Confidence 46789999999999999999886 3589999999999999999998877643 38888888654
Q ss_pred CCCccEEEEc------ccccccCcch--------------HHHHHHHHHhccCCeEEEEECCCh
Q 020710 217 DGKYDTVVCL------DVLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 217 ~~~fD~V~~~------~~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
.++||.|++. .++.+-|+.. ..++++++.+++++||.+.+...+
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3689999963 3555545411 246788888888777776654443
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.00 E-value=8.1e-09 Score=96.48 Aligned_cols=102 Identities=22% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC-------CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
++.+|||+|||+|.++..++..++ +|++||+|+.+++.+++++..+++. .+ ++++++|+.+. .+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~-------v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSK-------AEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc-------EEEEEccHHHHHHHHHhcCC
Confidence 478999999999999988776665 7999999999999999999887764 22 38999998664 35
Q ss_pred CccEEEEcccccccCcc-------hHHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHYPQS-------KADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~-------~~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|++.--...-... ....+++...++++++|++.+
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 89999987442111111 123344455566666665543
No 142
>PRK04148 hypothetical protein; Provisional
Probab=98.99 E-value=5.7e-09 Score=81.75 Aligned_cols=88 Identities=24% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCeEEEECCCccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 148 KGIAVCDAGCGTGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
++.+|||||||.|. .+..|++.|.+|+++|+++..++.++++. +.++..|+.+. -+.+|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~---------------~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG---------------LNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC---------------CeEEECcCCCCCHHHHhcCCE
Confidence 46789999999996 88899999999999999999988886653 17899999887 367999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++. -|.+++...+.++++-.+-.+++.
T Consensus 81 iysi-----rpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSI-----RPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEe-----CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9963 345556666666666555555553
No 143
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.99 E-value=4.1e-09 Score=92.65 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=102.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~ 217 (322)
+...++|+|||-|..++..-+.|. +++|+||+...|+.|+++..+...... +.- -.+.|+++|.... +
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-~~~-f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-KFI-FTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-ccc-ceeEEEEeccchhHHHHhccCCC
Confidence 477899999999999988887776 599999999999999999876543321 000 1237888886442 3
Q ss_pred CCccEEEEccccccc-Cc-chHHHHHHHHHhccCCeEEEE-ECCChhh-HHHHH-----HhhccC---------------
Q 020710 218 GKYDTVVCLDVLIHY-PQ-SKADGMIAHLASLAEKRLILS-FAPKTFY-YDLLK-----RVGELF--------------- 273 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~-~~-~~~~~~l~~l~~~~~~~~il~-~~~~~~~-~~~~~-----~~~~~~--------------- 273 (322)
.+||+|-|-.++|+- .. +...-+++.+.+.+++||+++ ..|+... ..-++ .++.-+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~ 274 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDV 274 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCC
Confidence 459999999999763 33 335678899988877766554 4454311 00010 111111
Q ss_pred CCCC----------CccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 274 PGPS----------KATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 274 ~~~~----------~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
+... -+...|+..-..+..++++-|++++.+.
T Consensus 275 p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k 316 (389)
T KOG1975|consen 275 PPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVK 316 (389)
T ss_pred CCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEec
Confidence 0000 0123344467789999999999998753
No 144
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.98 E-value=5.4e-09 Score=88.51 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=81.1
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
|.......+.+++++... .++.+|||+|||+|.++..++.+ ..+|+++|+++.+++.+++++...+..+
T Consensus 34 Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-------- 103 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN-------- 103 (199)
T ss_pred CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc--------
Confidence 444555566677777542 24679999999999999865555 4689999999999999999988776532
Q ss_pred CceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhc--cCCeEEEEE
Q 020710 206 PKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASL--AEKRLILSF 256 (322)
Q Consensus 206 ~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~--~~~~~il~~ 256 (322)
+.++++|+.+. .++||+|++.--+. ......+++.+... +.++.++.+
T Consensus 104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~---~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 104 ARVVNTNALSFLAQPGTPHNVVFVDPPFR---KGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred EEEEEchHHHHHhhcCCCceEEEECCCCC---CChHHHHHHHHHHCCCcCCCcEEEE
Confidence 38899997653 35799999865532 11134566666552 344444444
No 145
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=9.9e-09 Score=97.95 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+..+ +.++++|+.+. .++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~--------v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN--------IETKALDARKVHEKFAEK 320 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--------EEEEeCCcccccchhccc
Confidence 35789999999999999999875 4689999999999999999998877643 38899998764 368
Q ss_pred ccEEEEccc------ccccCcc-------h-------HHHHHHHHHhccCCeEEEEECCCh
Q 020710 220 YDTVVCLDV------LIHYPQS-------K-------ADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 220 fD~V~~~~~------l~~~~~~-------~-------~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
||+|++..- +.+-|+. . ...+++...+++++||.+.+...+
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999997432 2222211 0 135788888877777766654433
No 146
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.97 E-value=2.4e-09 Score=93.83 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=72.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
....+|||||+|.|.++..+++. +.+++..|+ |.+++.+++ .+|+ +++.+|+.+. +. +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv-------~~~~gd~f~~~P~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRV-------EFVPGDFFDPLPV-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTE-------EEEES-TTTCCSS-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------cccc-------ccccccHHhhhcc-ccce
Confidence 45678999999999999999987 789999998 888888877 3333 9999999755 55 9999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCe
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKR 251 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 251 (322)
++..+||+++++....+|+++++.+++|
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999976543
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=98.96 E-value=2.5e-08 Score=90.77 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHh--H---HhhhccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKA--E---EELLADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~--~---~~~~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
.+.+||+||||+|..+..+++.. .+|+.||++++|++.|++.. . .... .-.+++++.+|+.+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~------~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF------FDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC------CCCceEEEECcHHHHHHhc
Confidence 46799999999999999898873 68999999999999999621 1 1111 112348889997653
Q ss_pred CCCccEEEEccccc--ccCcch-HHHHHHHHHhccCCeEEEEEC
Q 020710 217 DGKYDTVVCLDVLI--HYPQSK-ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 ~~~fD~V~~~~~l~--~~~~~~-~~~~l~~l~~~~~~~~il~~~ 257 (322)
.++||+|++...-. ...... -.++++.+++.++++|++.+.
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999863210 000111 257889999988888877664
No 148
>PLN02476 O-methyltransferase
Probab=98.95 E-value=7.6e-09 Score=91.48 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=85.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.++... .++++|||||+++|+.+.++++. +.+|+++|.++++.+.|++++++.+..+++ +++.+
T Consensus 107 g~lL~~L~~~--~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I-------~li~G 177 (278)
T PLN02476 107 AQLLAMLVQI--LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKV-------NVKHG 177 (278)
T ss_pred HHHHHHHHHh--cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEc
Confidence 3444444443 35789999999999999999874 457999999999999999999999887655 99999
Q ss_pred ccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 212 DLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 212 d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+.+. .++||+|+.- -+......+++.+.+++++|++|.+.
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 97552 2689999963 23444678888888888888877664
No 149
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.95 E-value=4.4e-09 Score=94.44 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=71.6
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++++++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++...+...+ ++++.+|+
T Consensus 25 ~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~-------v~ii~~Da 94 (294)
T PTZ00338 25 LDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASK-------LEVIEGDA 94 (294)
T ss_pred HHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCc-------EEEEECCH
Confidence 3455554433 3678999999999999999999988999999999999999998876543222 38999998
Q ss_pred ccC-CCCccEEEEcccccccCcchHHHHH
Q 020710 214 ESL-DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 214 ~~~-~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
... ...||.|+++.-+ ++..+.+..++
T Consensus 95 l~~~~~~~d~VvaNlPY-~Istpil~~ll 122 (294)
T PTZ00338 95 LKTEFPYFDVCVANVPY-QISSPLVFKLL 122 (294)
T ss_pred hhhcccccCEEEecCCc-ccCcHHHHHHH
Confidence 765 3578998876544 44443333333
No 150
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.94 E-value=3.9e-09 Score=97.48 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=82.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+++.+.+++... +.+|||+|||+|.++..+++...+|+|||+++.|++.+++++...++.+ +.|+.+|
T Consensus 186 l~~~v~~~~~~~----~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~--------v~~~~~d 253 (353)
T TIGR02143 186 MLEWACEVTQGS----KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDN--------VQIIRMS 253 (353)
T ss_pred HHHHHHHHhhcC----CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEEcC
Confidence 344444544322 3479999999999999999887789999999999999999998776543 3899999
Q ss_pred cccC-C------------------CCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhhHH
Q 020710 213 LESL-D------------------GKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFYYD 264 (322)
Q Consensus 213 ~~~~-~------------------~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~ 264 (322)
+.+. . ..||+|+. .-|... ...+++.+.+ .+.-++++|.|.++.+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l-----DPPR~G~~~~~l~~l~~-~~~ivYvsC~p~tlaRD 319 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFV-----DPPRAGLDPDTCKLVQA-YERILYISCNPETLKAN 319 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEE-----CCCCCCCcHHHHHHHHc-CCcEEEEEcCHHHHHHH
Confidence 7653 1 13798885 344333 2466666665 45666788888877544
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=4.2e-09 Score=99.80 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=79.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+ +.+.+.|+..+ +++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~--------v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS--------IEIKIADAERLTEYVQDT 307 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe--------EEEEECchhhhhhhhhcc
Confidence 46789999999999999999876 5689999999999999999998877643 37889997654 578
Q ss_pred ccEEEEcc------cccccCcc--------------hHHHHHHHHHhccCCeEEEEECCChhh
Q 020710 220 YDTVVCLD------VLIHYPQS--------------KADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 220 fD~V~~~~------~l~~~~~~--------------~~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
||.|++.. ++..-|+- .-.+++.++.+.+++||++.+...++.
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99999721 22222210 014567788887777777766554443
No 152
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.94 E-value=7.4e-09 Score=96.01 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----C-------
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----D------- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~------- 217 (322)
+.+|||++||+|.++..+++...+|+|||+|+.+++.+++++...++.+ +.|+.+|+.+. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~--------v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDN--------VQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCc--------EEEEECCHHHHHHHHhhcccccc
Confidence 3579999999999999999887789999999999999999988776542 38999998653 1
Q ss_pred --------CCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhh
Q 020710 218 --------GKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 218 --------~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
.+||+|+. .-|... ...+++.+.+ .+.-++++|+|.++.
T Consensus 279 ~~~~~~~~~~~D~v~l-----DPPR~G~~~~~l~~l~~-~~~ivyvSC~p~tla 326 (362)
T PRK05031 279 LKGIDLKSYNFSTIFV-----DPPRAGLDDETLKLVQA-YERILYISCNPETLC 326 (362)
T ss_pred cccccccCCCCCEEEE-----CCCCCCCcHHHHHHHHc-cCCEEEEEeCHHHHH
Confidence 14899986 333322 2466666665 455667788776643
No 153
>PLN02366 spermidine synthase
Probab=98.93 E-value=1.4e-08 Score=91.61 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=76.9
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C-CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L-DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~~f 220 (322)
++.+||+||||.|..+..+++. ..+|+.||+++.+++.+++.+...... ..-.+++++.+|+.. . +++|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~----~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG----FDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc----cCCCceEEEEChHHHHHhhccCCCC
Confidence 5789999999999999999988 357999999999999999988653210 011234899999643 2 4689
Q ss_pred cEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|++...-.+.+... -..+++.+++.++++|++..
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9999854433323221 25789999998888877754
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.92 E-value=4.4e-09 Score=88.69 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=74.5
Q ss_pred HHHHH-HHhhhcCCCCCCeEEEECCCcccch----HHHHh---c--C--CEEEEEeCCHHHHHHHHHHh-----------
Q 020710 134 VENTM-QMLNDEGSLKGIAVCDAGCGTGSLA----IPLAK---Q--G--AIVSASDISAAMVAEARKKA----------- 190 (322)
Q Consensus 134 ~~~~~-~~l~~~~~~~~~~VLDvGcG~G~~~----~~la~---~--~--~~v~gvD~s~~~l~~a~~~~----------- 190 (322)
.+.++ .++......+..+|+.+||++|.-. ..+.+ . + .+++|+|+|+.+++.|++-.
T Consensus 16 ~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~ 95 (196)
T PF01739_consen 16 RDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPP 95 (196)
T ss_dssp HHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-H
T ss_pred HHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHH
Confidence 34455 3443332235679999999999843 33334 1 2 58999999999999998622
Q ss_pred ---HHhh--hcc-CCCCC---CCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 191 ---EEEL--LAD-NGGEA---PVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 191 ---~~~~--~~~-~~~~~---~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
...- ..+ ...+. ..++.|...|+.+. .+.||+|+|.+||.++.++....+++.+++.+.+||++.+.+
T Consensus 96 ~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 96 AYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred HHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0000 000 00000 02458999998773 689999999999999998888899999999999999888765
Q ss_pred Ch
Q 020710 259 KT 260 (322)
Q Consensus 259 ~~ 260 (322)
..
T Consensus 176 sE 177 (196)
T PF01739_consen 176 SE 177 (196)
T ss_dssp T-
T ss_pred Cc
Confidence 43
No 155
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.92 E-value=9.3e-09 Score=97.59 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+...++ .+..+|.... .++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v-------~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKA-------ETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEE-------EEeccccccccccccccc
Confidence 46789999999999999999886 368999999999999999999887654311 3456665432 467
Q ss_pred ccEEEEc------ccccccCcch--------------HHHHHHHHHhccCCeEEEEECCChh
Q 020710 220 YDTVVCL------DVLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 220 fD~V~~~------~~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
||.|++. .++++.|+-. -..+|++..+++++||.+.+...++
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999962 3455555411 1468888888888777776654443
No 156
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.4e-08 Score=85.73 Aligned_cols=102 Identities=23% Similarity=0.347 Sum_probs=84.4
Q ss_pred hcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C
Q 020710 143 DEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D 217 (322)
Q Consensus 143 ~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 217 (322)
..+..++.+|||.|.|+|.++.+|+.. ..+|+..|+-++..+.|++++.+.++.+++ .+..+|+.+. .
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v-------~~~~~Dv~~~~~~ 161 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV-------TLKLGDVREGIDE 161 (256)
T ss_pred HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce-------EEEeccccccccc
Confidence 334468999999999999999999975 358999999999999999999998887755 8888998775 5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECC
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAP 258 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~ 258 (322)
..||.|+. .+|+|. .+++++.+++++|+.+ .+.|
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcC
Confidence 68999995 888876 9999999987665544 4544
No 157
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.91 E-value=8.6e-09 Score=91.55 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+..+ +.+...|...+ .+.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~--------v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN--------VAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--------EEEecCCHHHhhhhccCC
Confidence 46789999999999999998876 3589999999999999999998876543 37888887654 4679
Q ss_pred cEEEEcc------cccccCcc--------------hHHHHHHHHHhccCCeEEEEECCChhh
Q 020710 221 DTVVCLD------VLIHYPQS--------------KADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 221 D~V~~~~------~l~~~~~~--------------~~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
|.|++.- ++.+-|+. ...++|+...+++++||++.+...++.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999632 22222211 013577788787777776665544433
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.90 E-value=1.7e-08 Score=89.94 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=75.8
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+.+|||||||+|..+..+++.. .+++++|+++++++.+++.+...... ....+++++.+|.... .++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~----~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS----YDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc----ccCCceEEEECchHHHHHhCCCCcc
Confidence 35699999999999999888873 57999999999999999987653210 0112237778886542 67899
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|++......-+... ..++++.+++.++++|++.+.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999865432222222 357888999888777777654
No 159
>PRK03612 spermidine synthase; Provisional
Probab=98.90 E-value=2.1e-08 Score=97.23 Aligned_cols=104 Identities=19% Similarity=0.082 Sum_probs=75.6
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHH--hHHhh---hccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKK--AEEEL---LADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~--~~~~~---~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
++++|||||||+|..+..+++++ .+|++||+++++++.++++ +.+.. ..+ .+++++.+|+.+.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d------prv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDD------PRVTVVNDDAFNWLRKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCC------CceEEEEChHHHHHHhC
Confidence 56899999999999999998874 5899999999999999983 32211 111 2238889997663
Q ss_pred CCCccEEEEcccccccCcc-h--HHHHHHHHHhccCCeEEEEEC
Q 020710 217 DGKYDTVVCLDVLIHYPQS-K--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~-~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+++||+|++...-...+.. . -.++++.+++.++++|++.+.
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 5799999987543222211 1 146888999988888877664
No 160
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=9e-09 Score=88.63 Aligned_cols=102 Identities=25% Similarity=0.265 Sum_probs=81.3
Q ss_pred chhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccC
Q 020710 121 RVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADN 198 (322)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 198 (322)
.....+||.++..++.+++.+....-..+..|||+|||+|..+..++.. .+.|++||.|+.++..|.+++....+.++
T Consensus 121 pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 121 PGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred CCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence 3455678889999999999988764345668999999999999988876 67899999999999999999999888875
Q ss_pred CCCCCCCCceEEcccc----cC----CCCccEEEEcccc
Q 020710 199 GGEAPVMPKFEVKDLE----SL----DGKYDTVVCLDVL 229 (322)
Q Consensus 199 ~~~~~~~~~~~~~d~~----~~----~~~fD~V~~~~~l 229 (322)
+ ..+..+++ .. .+++|+++|+--.
T Consensus 201 i-------~v~~~~me~d~~~~~~l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 201 I-------EVIHNIMESDASDEHPLLEGKIDLLVSNPPY 232 (328)
T ss_pred e-------EEEecccccccccccccccCceeEEecCCCc
Confidence 4 44433322 22 6999999998753
No 161
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.88 E-value=8.4e-09 Score=95.25 Aligned_cols=115 Identities=25% Similarity=0.374 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++... +.+|||+-||.|.++..|++...+|+|||+++.+++.|++++..+++.+ ++|+.
T Consensus 183 ~~l~~~~~~~l~~~----~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n--------~~f~~ 250 (352)
T PF05958_consen 183 EKLYEQALEWLDLS----KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDN--------VEFIR 250 (352)
T ss_dssp HHHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--S--------EEEEE
T ss_pred HHHHHHHHHHhhcC----CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCc--------ceEEE
Confidence 35566677777654 3489999999999999999999999999999999999999999888765 48888
Q ss_pred cccccC-------------------CCCccEEEEcccccccCcchH-HHHHHHHHhccCCeEEEEECCChhhH
Q 020710 211 KDLESL-------------------DGKYDTVVCLDVLIHYPQSKA-DGMIAHLASLAEKRLILSFAPKTFYY 263 (322)
Q Consensus 211 ~d~~~~-------------------~~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~~~~~il~~~~~~~~~ 263 (322)
+++++. ...+|+|+. .-|...+ ..+++.+.+ .+.-++++|+|.++.+
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-----DPPR~G~~~~~~~~~~~-~~~ivYvSCnP~tlaR 317 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-----DPPRAGLDEKVIELIKK-LKRIVYVSCNPATLAR 317 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE--------TT-SCHHHHHHHHH-SSEEEEEES-HHHHHH
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-----cCCCCCchHHHHHHHhc-CCeEEEEECCHHHHHH
Confidence 776543 125788874 4554433 245555554 3566788898877643
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=86.84 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE-
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV- 210 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~- 210 (322)
..++.++... ..+++|||||.+.|+.+.+++.. ..+++.+|+++++.+.|++++.+.+..+++ ..+.
T Consensus 48 g~~L~~L~~~--~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i-------~~~~~ 118 (219)
T COG4122 48 GALLRLLARL--SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRI-------ELLLG 118 (219)
T ss_pred HHHHHHHHHh--cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceE-------EEEec
Confidence 3444444443 35789999999999999999876 358999999999999999999999998755 6777
Q ss_pred cccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 211 KDLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 211 ~d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|..+. .++||+|+.- -.......++..+.+++.+|+++.+.
T Consensus 119 gdal~~l~~~~~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CcHHHHHHhccCCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 475443 6899999962 23333568888888888777777653
No 163
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=90.36 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=65.9
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++++++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++... .+ ++++++|+
T Consensus 18 ~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~-------v~ii~~D~ 84 (258)
T PRK14896 18 VDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GN-------VEIIEGDA 84 (258)
T ss_pred HHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CC-------EEEEEecc
Confidence 4555555433 35789999999999999999999889999999999999999887541 11 38999999
Q ss_pred ccC-CCCccEEEEcccc
Q 020710 214 ESL-DGKYDTVVCLDVL 229 (322)
Q Consensus 214 ~~~-~~~fD~V~~~~~l 229 (322)
.+. ...||.|+++-.+
T Consensus 85 ~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 85 LKVDLPEFNKVVSNLPY 101 (258)
T ss_pred ccCCchhceEEEEcCCc
Confidence 876 3568999987664
No 164
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=3.5e-08 Score=83.07 Aligned_cols=114 Identities=10% Similarity=0.099 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..+.+..++... .++.+|||++||+|.++..++.+|+ +|++||.++.+++.+++++...+..+++ +++.+
T Consensus 36 vrea~f~~l~~~--~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~-------~~~~~ 106 (189)
T TIGR00095 36 VRELFFNILRPE--IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQA-------EVVRN 106 (189)
T ss_pred HHHHHHHHHHHh--cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccE-------EEEeh
Confidence 334555655432 3578999999999999999999987 7999999999999999999887665433 88999
Q ss_pred ccccC------CC-CccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEECC
Q 020710 212 DLESL------DG-KYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSFAP 258 (322)
Q Consensus 212 d~~~~------~~-~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~~~ 258 (322)
|+... .. .||+|+.---+.. .....++..+.. ++++++++.+.+
T Consensus 107 D~~~~l~~~~~~~~~~dvv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 107 SALRALKFLAKKPTFDNVIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred hHHHHHHHhhccCCCceEEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 98442 22 3677776544321 124455665544 466777776643
No 165
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.87 E-value=1.6e-07 Score=84.97 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=91.4
Q ss_pred HHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc------CC
Q 020710 98 REYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ------GA 171 (322)
Q Consensus 98 ~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~------~~ 171 (322)
+-+||..+-+-|.++....+.+.. ..+. .+++.....|... ..++..|+|+|||.|.=+..|.+. ..
T Consensus 33 k~~YD~~Gs~LFe~It~lpEYYpt-r~E~-----~iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 33 LLLYDDEGLKLFEEITYSPEYYLT-NDEI-----EILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred HhhhcchHHHHHHHHHcCCccCCh-HHHH-----HHHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 468888888888887654333222 1111 1122222222221 124568999999999987766543 46
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------CCCccEEEEcc-cccccCcchHHHHH
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------DGKYDTVVCLD-VLIHYPQSKADGMI 241 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~fD~V~~~~-~l~~~~~~~~~~~l 241 (322)
.++++|+|.++++.+.+++....... ..+.-+++|+.+. .....+|+... ++.++++++...+|
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p~------l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL 179 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFSH------VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFL 179 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCCC------eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHH
Confidence 79999999999999999887222111 1124477777442 23467777665 89999998899999
Q ss_pred HHHHh-ccCCe
Q 020710 242 AHLAS-LAEKR 251 (322)
Q Consensus 242 ~~l~~-~~~~~ 251 (322)
+.+++ .++++
T Consensus 180 ~~~~~~~l~~~ 190 (319)
T TIGR03439 180 AGFLATALSPS 190 (319)
T ss_pred HHHHHhhCCCC
Confidence 99998 65433
No 166
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.85 E-value=9.3e-08 Score=83.33 Aligned_cols=121 Identities=25% Similarity=0.285 Sum_probs=90.1
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
..++.+|||.|.|+|.++..|+.. ..+|+..|+.++..+.|++++...++...+ .+...|+...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v-------~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNV-------TVHHRDVCEEGFDEEL 110 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTE-------EEEES-GGCG--STT-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCc-------eeEecceecccccccc
Confidence 458999999999999999999976 358999999999999999999998886544 8899998532
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhcc-CCeE-EEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERAL 294 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~-~~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (322)
+..+|.|+. .+|+|. ..+.++.+.+ ++|+ ++.+.|.-. ......+.|
T Consensus 111 ~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ie------------------------Qv~~~~~~L 159 (247)
T PF08704_consen 111 ESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIE------------------------QVQKTVEAL 159 (247)
T ss_dssp TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHH------------------------HHHHHHHHH
T ss_pred cCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHH------------------------HHHHHHHHH
Confidence 467999985 888877 8888888877 5555 455555321 134556778
Q ss_pred HHCCCEEEEE
Q 020710 295 QKVGWKIRKR 304 (322)
Q Consensus 295 ~~aGf~vv~~ 304 (322)
++.||..++.
T Consensus 160 ~~~gf~~i~~ 169 (247)
T PF08704_consen 160 REHGFTDIET 169 (247)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCeeeEE
Confidence 8899987763
No 167
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.83 E-value=1.3e-08 Score=90.77 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+++.|++.+++++.. .+ ++++++|
T Consensus 30 i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~-------v~~i~~D 95 (272)
T PRK00274 30 ILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DN-------LTIIEGD 95 (272)
T ss_pred HHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----Cc-------eEEEECh
Confidence 34555565543 3578999999999999999999988999999999999999887643 12 2899999
Q ss_pred cccCC-CC--ccEEEEccc
Q 020710 213 LESLD-GK--YDTVVCLDV 228 (322)
Q Consensus 213 ~~~~~-~~--fD~V~~~~~ 228 (322)
+.+.+ .. +|.|+++--
T Consensus 96 ~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 96 ALKVDLSELQPLKVVANLP 114 (272)
T ss_pred hhcCCHHHcCcceEEEeCC
Confidence 88762 22 478887644
No 168
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.82 E-value=1.5e-07 Score=78.73 Aligned_cols=136 Identities=21% Similarity=0.299 Sum_probs=87.8
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
...-++.++++|... .+...|-|+|||.+.++..+ ..+..|...|+-.. +..+.
T Consensus 56 P~nPvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------------------n~~Vt 109 (219)
T PF05148_consen 56 PVNPVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------------------NPRVT 109 (219)
T ss_dssp SS-HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------------------STTEE
T ss_pred CCCcHHHHHHHHHhc--CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------------------CCCEE
Confidence 445568899999875 34579999999999998654 34567999998531 11678
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
.+|+... +++.|+++++-+|... + +..++++..|+++++|++.+..-.. . +-+
T Consensus 110 acdia~vPL~~~svDv~VfcLSLMGT-n--~~~fi~EA~RvLK~~G~L~IAEV~S----------R-----------f~~ 165 (219)
T PF05148_consen 110 ACDIANVPLEDESVDVAVFCLSLMGT-N--WPDFIREANRVLKPGGILKIAEVKS----------R-----------FEN 165 (219)
T ss_dssp ES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG----------G------------S-
T ss_pred EecCccCcCCCCceeEEEEEhhhhCC-C--cHHHHHHHHheeccCcEEEEEEecc----------c-----------CcC
Confidence 8898775 7999999998887543 3 7799999999998888776532111 1 225
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhh
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFAR 315 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~ 315 (322)
.+.+.+.+++.||++...+..+..|++-.
T Consensus 166 ~~~F~~~~~~~GF~~~~~d~~n~~F~~f~ 194 (219)
T PF05148_consen 166 VKQFIKALKKLGFKLKSKDESNKHFVLFE 194 (219)
T ss_dssp HHHHHHHHHCTTEEEEEEE--STTEEEEE
T ss_pred HHHHHHHHHHCCCeEEecccCCCeEEEEE
Confidence 78899999999999999888777666543
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.81 E-value=5.8e-08 Score=87.84 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEE-ccccc-------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEV-KDLES-------L 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~-~d~~~-------~ 216 (322)
++.++||||||+|.....++.. +++++|+|+++.+++.|++++... ++.+++ .+.. .|..+ .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I-------~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI-------RLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE-------EEEEccchhhhhhccccc
Confidence 4679999999999887777655 889999999999999999999887 566543 5543 23221 1
Q ss_pred CCCccEEEEcccccc
Q 020710 217 DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~ 231 (322)
.+.||+|+|+--++.
T Consensus 187 ~~~fDlivcNPPf~~ 201 (321)
T PRK11727 187 NERFDATLCNPPFHA 201 (321)
T ss_pred CCceEEEEeCCCCcC
Confidence 468999999987643
No 170
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.78 E-value=3.9e-08 Score=87.63 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=81.3
Q ss_pred CCeEEEECCCcccch----HHHHhc------CCEEEEEeCCHHHHHHHHHHhHH-h---h---------h------c-c-
Q 020710 149 GIAVCDAGCGTGSLA----IPLAKQ------GAIVSASDISAAMVAEARKKAEE-E---L---------L------A-D- 197 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~----~~la~~------~~~v~gvD~s~~~l~~a~~~~~~-~---~---------~------~-~- 197 (322)
..+|+..||+||.-. ..+.+. ..+|+|+|||+.+++.|++-.-. . + . . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999843 333332 35799999999999999864210 0 0 0 0 0
Q ss_pred -CCCCC-CCCCceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 198 -NGGEA-PVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 198 -~~~~~-~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
+++.. ...+.|...|+.+. .+.||+|+|.+++.|+.++....+++.+.+.+++||++.+.+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 01001 13468999998763 47899999999999998887889999999999888888776543
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.77 E-value=5.2e-08 Score=80.94 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.++.+|||+|||+|..+..++.. +.+|+..|.++ .++..+.++..++ ...+ +.+...|..+.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~-------v~v~~L~Wg~~~~~~~~ 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR-------VSVRPLDWGDELDSDLL 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------------EEEE--TTS-HHHHHH
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc-------ccCcEEEecCccccccc
Confidence 46789999999999999999998 67899999999 9999988887655 2222 26777765442
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE 249 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~ 249 (322)
..+||+|+++++++.- +....+++.+.+++.
T Consensus 116 ~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~ 147 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDE--ELFEPLVRTLKRLLK 147 (173)
T ss_dssp S-SSBSEEEEES--S-G--GGHHHHHHHHHHHBT
T ss_pred ccccCCEEEEecccchH--HHHHHHHHHHHHHhC
Confidence 4689999999999753 336788888888753
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.77 E-value=5.5e-08 Score=85.91 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++.. ..+ ++++.+|
T Consensus 17 i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~-------v~v~~~D 83 (253)
T TIGR00755 17 VIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YER-------LEVIEGD 83 (253)
T ss_pred HHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCc-------EEEEECc
Confidence 34555555543 3578999999999999999999988899999999999999877643 111 2788999
Q ss_pred cccCC-CCcc---EEEEcccccccCcchHHHHHHHHHh-ccCCeEEEEE
Q 020710 213 LESLD-GKYD---TVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSF 256 (322)
Q Consensus 213 ~~~~~-~~fD---~V~~~~~l~~~~~~~~~~~l~~l~~-~~~~~~il~~ 256 (322)
+...+ ..|| .|+++-.+ |+.. .++..+.. ....+.++.+
T Consensus 84 ~~~~~~~~~d~~~~vvsNlPy-~i~~----~il~~ll~~~~~~~~~~~~ 127 (253)
T TIGR00755 84 ALKVDLPDFPKQLKVVSNLPY-NISS----PLIFKLLEKPKFRLAVLMV 127 (253)
T ss_pred hhcCChhHcCCcceEEEcCCh-hhHH----HHHHHHhccCCCceEEEEe
Confidence 87763 3466 66654432 3333 44444442 2233444444
No 173
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.76 E-value=1.7e-07 Score=80.25 Aligned_cols=135 Identities=18% Similarity=0.285 Sum_probs=99.7
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
...-++.+++.|... .....|.|+|||.+.++. .....|...|+-+. +-.++
T Consensus 164 P~nPld~ii~~ik~r--~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~-----------------------~~~V~ 215 (325)
T KOG3045|consen 164 PENPLDVIIRKIKRR--PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV-----------------------NERVI 215 (325)
T ss_pred CCChHHHHHHHHHhC--cCceEEEecccchhhhhh---ccccceeeeeeecC-----------------------CCcee
Confidence 445568888888876 456789999999998765 33456888887321 11678
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
.+|+... +++.|+++++.+|.- .+ +..++++..|+++.||++.+..-. . .+.+
T Consensus 216 ~cDm~~vPl~d~svDvaV~CLSLMg-tn--~~df~kEa~RiLk~gG~l~IAEv~----------S-----------Rf~d 271 (325)
T KOG3045|consen 216 ACDMRNVPLEDESVDVAVFCLSLMG-TN--LADFIKEANRILKPGGLLYIAEVK----------S-----------RFSD 271 (325)
T ss_pred eccccCCcCccCcccEEEeeHhhhc-cc--HHHHHHHHHHHhccCceEEEEehh----------h-----------hccc
Confidence 8888775 799999998877743 33 789999999999888877553211 1 1235
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
...+.+.|...||.+...+..+..|++=.+
T Consensus 272 v~~f~r~l~~lGF~~~~~d~~n~~F~lfef 301 (325)
T KOG3045|consen 272 VKGFVRALTKLGFDVKHKDVSNKYFTLFEF 301 (325)
T ss_pred HHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence 677999999999999999988888776443
No 174
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.7e-08 Score=76.27 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhc-CCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDE-GSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~-~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
....++..|... +.-++++++|+|||.|-++....-.+. .|+|+||++++++.++++..+..+.+ ++.+
T Consensus 32 iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi---------dlLq 102 (185)
T KOG3420|consen 32 IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI---------DLLQ 102 (185)
T ss_pred HHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh---------heee
Confidence 345555555442 345789999999999999977766655 49999999999999999999887765 8999
Q ss_pred cccccC---CCCccEEEEcccc
Q 020710 211 KDLESL---DGKYDTVVCLDVL 229 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l 229 (322)
+|+.++ .+.||.++.+.-+
T Consensus 103 cdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 103 CDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred eeccchhccCCeEeeEEecCCC
Confidence 998876 6889999987655
No 175
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.75 E-value=7.8e-08 Score=84.01 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=84.2
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++..+... .+..+|||||+++|+.+.++++. +.+++.+|++++..+.|++.+.+.+..+++ +++.+|
T Consensus 69 ~lL~~l~~~--~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I-------~~~~G~ 139 (247)
T PLN02589 69 QFLNMLLKL--INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKI-------DFREGP 139 (247)
T ss_pred HHHHHHHHH--hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-------EEEecc
Confidence 444444332 24679999999999999999875 568999999999999999999999887665 999999
Q ss_pred cccC----------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 213 LESL----------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 213 ~~~~----------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+.+. .++||+|+.-. . .......++.+.+++.+|++|.+..
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDa----d-K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDA----D-KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecC----C-HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 7653 26899999642 2 3335677888778888888877643
No 176
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.74 E-value=3.6e-08 Score=83.35 Aligned_cols=101 Identities=26% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
...+||||||.|.++..+|.. ...++|+|++...+..+.+++...++.| +.++++|+... ++++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N--------v~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN--------VRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS--------EEEEES-CTTHHHHHSTTTSE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc--------eEEEEccHHHHHhhcccCCch
Confidence 348999999999999999987 6789999999999999999998887755 58899998773 6899
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
|-|+....=-|..... -..+++.+.+++++||.+.+.
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 9999643322221111 268899999988887777654
No 177
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.74 E-value=2.9e-08 Score=83.68 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||+|||+|.++..+++. ..+|+++|+|+.+ .. . .+.+.++|+.+.
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----~--------~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----E--------NVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----C--------CceEEEeeCCChhHHHHHH
Confidence 46789999999999999988876 3479999999864 10 1 127777787542
Q ss_pred ----CCCccEEEEcccc--------cccCc-chHHHHHHHHHhccCCeEEEEE
Q 020710 217 ----DGKYDTVVCLDVL--------IHYPQ-SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 ----~~~fD~V~~~~~l--------~~~~~-~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.++||+|++.... .|+.. .....+++.+.+++++||.+.+
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 4679999986532 11111 1135788888887766665544
No 178
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.73 E-value=8.8e-08 Score=76.69 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=86.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC---EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA---IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..+.+++.+.+... .+.-|||+|.|||.++..+.++|. .+++++.|++.+....+++... +
T Consensus 34 s~lA~~M~s~I~pe---sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~-------------~ 97 (194)
T COG3963 34 SILARKMASVIDPE---SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV-------------N 97 (194)
T ss_pred HHHHHHHHhccCcc---cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc-------------c
Confidence 34556666666654 677999999999999999999954 5999999999999998887653 6
Q ss_pred eEEcccccC--------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEE
Q 020710 208 FEVKDLESL--------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSF 256 (322)
Q Consensus 208 ~~~~d~~~~--------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~ 256 (322)
++.+|+.++ +..||.|+|.--+-.+|.....++++.+...++.|+ ++.+
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 788887765 578999999998888987767788888876554443 4444
No 179
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.71 E-value=4.1e-07 Score=80.13 Aligned_cols=130 Identities=20% Similarity=0.280 Sum_probs=88.4
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccch----HHHHhc-------CCEEEEEeCCHHHHHHHHHHhHH-----h
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLA----IPLAKQ-------GAIVSASDISAAMVAEARKKAEE-----E 193 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~----~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~-----~ 193 (322)
+..+.+.++..+.........+|+-+||+||.-. ..|.+. ..+|+|+|||..+++.|++-.-. .
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 3444556665444331114679999999999843 333332 35799999999999999753211 0
Q ss_pred hhc---------------cCCCCC-CCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 194 LLA---------------DNGGEA-PVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 194 ~~~---------------~~~~~~-~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
++. -+++-. ..+|.|...|+.+. .+.||+|+|-+||.++..+.-.++++.++..+++||++
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLL 237 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEE
Confidence 000 001001 13468888887554 57899999999999999887789999999999888888
Q ss_pred EECCC
Q 020710 255 SFAPK 259 (322)
Q Consensus 255 ~~~~~ 259 (322)
.+.+.
T Consensus 238 flG~s 242 (268)
T COG1352 238 FLGHS 242 (268)
T ss_pred EEccC
Confidence 77654
No 180
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.70 E-value=4.6e-08 Score=87.66 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=98.7
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
-...+|+|.|.|+.+..+..+..++.+++++...+-.+.+.+. .++ +.+.+|...--.+-|+|++..+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV-----------~~v~gdmfq~~P~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGV-----------EHVAGDMFQDTPKGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCc-----------ceecccccccCCCcCeEEEEee
Confidence 3689999999999999998876679999999877776666654 332 7778887655556689999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeE-EEEEC---CC-hhhHHH------HHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRL-ILSFA---PK-TFYYDL------LKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~-il~~~---~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
|||++|+...++|++++..++++| |++.. +. ....+. ...+..... ...+--.+..+++.++.++
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~----~~~Gkert~~e~q~l~~~~ 321 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQ----TSGGKERTLKEFQALLPEE 321 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHH----hccceeccHHHHHhcchhh
Confidence 999999999999999998654444 44332 21 100000 000000000 0011234789999999999
Q ss_pred CCEEEEEeee
Q 020710 298 GWKIRKRGLI 307 (322)
Q Consensus 298 Gf~vv~~~~~ 307 (322)
||.+...-..
T Consensus 322 gF~~~~~~~~ 331 (342)
T KOG3178|consen 322 GFPVCMVALT 331 (342)
T ss_pred cCceeEEEec
Confidence 9999876554
No 181
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.69 E-value=7.7e-07 Score=78.28 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCC--------------------CC-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGG--------------------EA----- 202 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--------------------~~----- 202 (322)
.+.+||--|||.|+++..++.+|..+.|.|.|-.|+-..+-.+......++.. +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 45799999999999999999999999999999999765443322100000000 00
Q ss_pred -------CCCCceEEcccccC---C---CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHH
Q 020710 203 -------PVMPKFEVKDLESL---D---GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKR 268 (322)
Q Consensus 203 -------~~~~~~~~~d~~~~---~---~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~ 268 (322)
..+.....+|+.+. + ++||+|+.+..+.-.++ +-+.++.+.+++++||+.+- .|-.+..
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N--i~~Yi~tI~~lLkpgG~WIN~GPLlyh~----- 208 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN--IIEYIETIEHLLKPGGYWINFGPLLYHF----- 208 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH--HHHHHHHHHHHhccCCEEEecCCccccC-----
Confidence 11335566666554 3 69999999866543333 67889999998877775543 3321111
Q ss_pred hhccCCCC-CCccccccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 269 VGELFPGP-SKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 269 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
... .......-.+.+|+.+++++.||+++..+.....-|
T Consensus 209 -----~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~~Y 248 (270)
T PF07942_consen 209 -----EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSILSGY 248 (270)
T ss_pred -----CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeecCC
Confidence 000 000011235889999999999999998777333333
No 182
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.69 E-value=6e-08 Score=81.10 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=84.4
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
..|+......+.+.++|... ..++.++||+-||+|.++...+.+|+ +|+.||.++..++..+++++..+..+++
T Consensus 20 ~~RPT~drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~---- 94 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKI---- 94 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGE----
T ss_pred CcCCCcHHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcce----
Confidence 34555556667778888753 23689999999999999999999987 6999999999999999999988776544
Q ss_pred CCCceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHH--hccCCeEEEEECC
Q 020710 204 VMPKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLA--SLAEKRLILSFAP 258 (322)
Q Consensus 204 ~~~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~--~~~~~~~il~~~~ 258 (322)
..+..|.... ..+||+|++---...-.. ...++..+. .++..++++.+.+
T Consensus 95 ---~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 95 ---RVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp ---EEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---eeeccCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 7778885432 579999997544322111 357777776 3566777666643
No 183
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=2.5e-07 Score=79.83 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=39.0
Q ss_pred HHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHH
Q 020710 136 NTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAE 185 (322)
Q Consensus 136 ~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~ 185 (322)
++...+...+ ..++.+|||+|||+|.++..+++.|+ +|+|+|+++.|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3444444332 13577999999999999999999965 69999999988875
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.65 E-value=9.5e-08 Score=85.56 Aligned_cols=76 Identities=33% Similarity=0.339 Sum_probs=64.0
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCcc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYD 221 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD 221 (322)
..+++.|||||||||.++...++.|+ +|++||.|. +.+.|++.+..++..+.+ +++.+.+++. + .+.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii-------~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVI-------TVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceE-------EEeecceEEEecCcccee
Confidence 45688999999999999999999987 599999876 559999999998887755 8888888775 4 8999
Q ss_pred EEEEcccc
Q 020710 222 TVVCLDVL 229 (322)
Q Consensus 222 ~V~~~~~l 229 (322)
+|++-+.-
T Consensus 130 iIvSEWMG 137 (346)
T KOG1499|consen 130 IIVSEWMG 137 (346)
T ss_pred EEeehhhh
Confidence 99985543
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.65 E-value=3.9e-07 Score=76.10 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCE---------EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAI---------VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~---------v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
.++..|||.-||+|.+.+..+.. ... ++|+|+++.+++.+++++...+....+ .+.+.|+.+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i-------~~~~~D~~~ 99 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI-------DFIQWDARE 99 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE-------EEEE--GGG
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce-------EEEecchhh
Confidence 46789999999999999877655 333 789999999999999999988876544 888889887
Q ss_pred C---CCCccEEEEcccccc-cCc-----chHHHHHHHHHhccCCeEEEEEC
Q 020710 216 L---DGKYDTVVCLDVLIH-YPQ-----SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 216 ~---~~~fD~V~~~~~l~~-~~~-----~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+ ++++|.|+++.-.-. +.. .-...+++++.++++++.++.+.
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 6 589999999765432 121 11356677777777776665553
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.65 E-value=1.7e-07 Score=88.91 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCeEEEECCCcccchHHHHhcC------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~f 220 (322)
...|||||||+|-++...++.+ .+|++||-|+.++...+++....++.+++ +++.+|+++. +.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V-------~vi~~d~r~v~lpekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV-------TVIHGDMREVELPEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE-------EEEES-TTTSCHSS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE-------EEEeCcccCCCCCCce
Confidence 4689999999999988777664 47999999999998888887777877665 9999999987 6799
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
|+|++-..-.....+...++|....+.++++|++
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCCCEE
Confidence 9999744332222333566777777777776665
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.62 E-value=2.8e-07 Score=81.56 Aligned_cols=97 Identities=24% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
-.++.|||||||.|.++...+..|+ +|++|+-| +|.+.|++..+.+.+.+|+ .++.+.+++. +++.|+|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rI-------tVI~GKiEdieLPEk~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRI-------TVIPGKIEDIELPEKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceE-------EEccCccccccCchhccEE
Confidence 3578899999999999999988877 59999975 5999999999888777765 8888888876 7999999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCe
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKR 251 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 251 (322)
++--.-..+-++...+-.-+.++.+++.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPN 275 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCC
Confidence 9755433333433333333445555443
No 188
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.62 E-value=3.3e-07 Score=77.85 Aligned_cols=122 Identities=23% Similarity=0.239 Sum_probs=84.5
Q ss_pred EEEECCCcccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-C-CCC-ccEEEEc
Q 020710 152 VCDAGCGTGSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-L-DGK-YDTVVCL 226 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~-fD~V~~~ 226 (322)
|.||||-.|++..+|.+.|. +++++|+++.-++.|+++....++.+++ +++.+|-.+ + .+. .|+|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i-------~~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRI-------EVRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTE-------EEEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccE-------EEEECCcccccCCCCCCCEEEEe
Confidence 68999999999999999975 6999999999999999999999887766 899999554 4 333 7999876
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.+=- .....++......+...--+++-|. .....++++|.+.||.++...+
T Consensus 74 GMGG----~lI~~ILe~~~~~~~~~~~lILqP~-------------------------~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 74 GMGG----ELIIEILEAGPEKLSSAKRLILQPN-------------------------THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EE-H----HHHHHHHHHTGGGGTT--EEEEEES-------------------------S-HHHHHHHHHHTTEEEEEEEE
T ss_pred cCCH----HHHHHHHHhhHHHhccCCeEEEeCC-------------------------CChHHHHHHHHHCCCEEEEeEE
Confidence 5432 2244556555443333222222222 1357999999999999999887
Q ss_pred eec
Q 020710 307 ITT 309 (322)
Q Consensus 307 ~~~ 309 (322)
...
T Consensus 125 v~e 127 (205)
T PF04816_consen 125 VEE 127 (205)
T ss_dssp EEE
T ss_pred EeE
Confidence 664
No 189
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.61 E-value=7e-08 Score=78.48 Aligned_cols=69 Identities=33% Similarity=0.339 Sum_probs=54.8
Q ss_pred eEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CC-CccEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DG-KYDTVV 224 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~-~fD~V~ 224 (322)
.|+|+.||.|.+++.+++.+.+|++||+++..++.+++++.-.++.+++ +|+++|+.+. .. .||+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I-------~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNI-------DFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGE-------EEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEeCCHHHHHhhccccccccEEE
Confidence 6999999999999999999999999999999999999999999887665 9999998765 11 289999
Q ss_pred Ec
Q 020710 225 CL 226 (322)
Q Consensus 225 ~~ 226 (322)
++
T Consensus 75 lS 76 (163)
T PF09445_consen 75 LS 76 (163)
T ss_dssp E-
T ss_pred EC
Confidence 85
No 190
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.60 E-value=1.7e-07 Score=79.07 Aligned_cols=143 Identities=19% Similarity=0.285 Sum_probs=95.0
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+.-+......++.+|||.+.|-|+.++..+++|+ +|+.++.++..++.|.-+-=..++. . ..++.+.+|+.
T Consensus 122 Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~-----~-~~i~iilGD~~ 195 (287)
T COG2521 122 DTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF-----E-IAIKIILGDAY 195 (287)
T ss_pred HHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc-----c-cccEEecccHH
Confidence 333334433345789999999999999999999999 8999999999998886432111111 0 13488999976
Q ss_pred cC-----CCCccEEEEcccccccCcc----h--HHHHHHHHHhccCCeE-EEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 215 SL-----DGKYDTVVCLDVLIHYPQS----K--ADGMIAHLASLAEKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 215 ~~-----~~~fD~V~~~~~l~~~~~~----~--~~~~l~~l~~~~~~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
+. |.+||+|+ |.-|.- + -.++.+++++++++|| ++-...+. +..+ ++
T Consensus 196 e~V~~~~D~sfDaIi-----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P---------g~ry-------rG 254 (287)
T COG2521 196 EVVKDFDDESFDAII-----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP---------GKRY-------RG 254 (287)
T ss_pred HHHhcCCccccceEe-----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC---------Cccc-------cc
Confidence 64 78899998 333320 1 2578999999875554 44332211 0011 11
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.--+..+.+.|+++||.++....
T Consensus 255 -~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 255 -LDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred -CChhHHHHHHHHhcCceeeeeeh
Confidence 11356899999999999887543
No 191
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.59 E-value=8.2e-07 Score=76.51 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=102.4
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
...+||||||.|.+...+|++ ...++|||+....+..+.+++.+.++.| +.+++.|+..+ +++.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N--------lri~~~DA~~~l~~~~~~~sl 120 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN--------LRLLCGDAVEVLDYLIPDGSL 120 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc--------EEEEcCCHHHHHHhcCCCCCe
Confidence 358999999999999999998 4569999999999999999999888732 38899998765 5699
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEECCC-hhhHHH-HHHhhccCC---CCCCccc-----ccc
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFAPK-TFYYDL-LKRVGELFP---GPSKATR-----AYL 284 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~~~-~~~~~~-~~~~~~~~~---~~~~~~~-----~~~ 284 (322)
|-|+.++.=-|..... -..+++.+.+.+++||.+.+..+ ..+..+ ........+ ......+ .-.
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDN 200 (227)
T ss_pred eEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccccccccccC
Confidence 9999654332222111 25789999998888887776433 333333 332222210 0001001 101
Q ss_pred CCHHHHHHHHHHCCCEEEEEeeee
Q 020710 285 HAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
....++++-....|-.+.......
T Consensus 201 ~~~T~yE~k~~~~g~~i~~l~~~~ 224 (227)
T COG0220 201 NPVTEYEQKFRRLGHPVYDLEFIK 224 (227)
T ss_pred CCCcHHHHHHHhCCCceEEEEEEe
Confidence 244678888999998887765543
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=3.7e-07 Score=78.78 Aligned_cols=82 Identities=24% Similarity=0.275 Sum_probs=69.2
Q ss_pred HhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC-C
Q 020710 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD-G 218 (322)
Q Consensus 140 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 218 (322)
.+...+..+...|||||-|||.++..|.+.|.+|+++++++.|+....++........+. .+..+|+...+ .
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kL-------qV~~gD~lK~d~P 122 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKL-------QVLHGDFLKTDLP 122 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcccee-------eEEecccccCCCc
Confidence 334444568889999999999999999999999999999999999999999876655544 88899998875 8
Q ss_pred CccEEEEccc
Q 020710 219 KYDTVVCLDV 228 (322)
Q Consensus 219 ~fD~V~~~~~ 228 (322)
.||.++.+--
T Consensus 123 ~fd~cVsNlP 132 (315)
T KOG0820|consen 123 RFDGCVSNLP 132 (315)
T ss_pred ccceeeccCC
Confidence 8999998543
No 193
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.59 E-value=2.9e-07 Score=77.79 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCcccchHHHHh--cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
.++..|||..||.|.++..+++ .+..|+++|++|.+++..++++..+++.+++ ....+|..+. .+.||.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i-------~~~~~D~~~~~~~~~~dr 172 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRI-------EVINGDAREFLPEGKFDR 172 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTE-------EEEES-GGG---TT-EEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeE-------EEEcCCHHHhcCccccCE
Confidence 3578999999999999999999 5788999999999999999999988887654 7889998876 689999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++. +|.. ...++....++.+.++++-
T Consensus 173 vim~-----lp~~-~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMN-----LPES-SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE-------TSS-GGGGHHHHHHHEEEEEEEE
T ss_pred EEEC-----ChHH-HHHHHHHHHHHhcCCcEEE
Confidence 9974 3321 2256666767666777653
No 194
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.58 E-value=2.3e-07 Score=85.22 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=88.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++..++|+|||.|....+++.. ++.++|+|.++..+.++........+.++. .++..|+... ++.||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~-------~~~~~~~~~~~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKC-------NFVVADFGKMPFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhc-------ceehhhhhcCCCCccccCc
Confidence 35568999999999999999887 688999999999999999988888887765 7788887665 799999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+.++.+|.++ ....++++.+.+++||++..
T Consensus 182 v~~ld~~~~~~~--~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 182 VRFLEVVCHAPD--LEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEEEeecccCCc--HHHHHHHHhcccCCCceEEe
Confidence 999999999999 55999999999888887765
No 195
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.55 E-value=9.4e-07 Score=81.84 Aligned_cols=103 Identities=21% Similarity=0.153 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
.+++|||+-|=||.++.+.+..|+ +|+.||+|...++.|++++.-+++.. ..+.|+++|+.+. ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~------~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG------DRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc------cceeeehhhHHHHHHHHHhcCCc
Confidence 478999999999999999999999 89999999999999999999888643 2238999998775 359
Q ss_pred ccEEEEcc-cccccCc------chHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLD-VLIHYPQ------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~-~l~~~~~------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|++-- .+---+. .....++..+.+++.+++++.+
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999742 1111111 1145666666777766665544
No 196
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.55 E-value=6.7e-08 Score=80.69 Aligned_cols=119 Identities=28% Similarity=0.326 Sum_probs=83.6
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcC--CCCCCeEEEECCCcccchHHHHhcCC
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEG--SLKGIAVCDAGCGTGSLAIPLAKQGA 171 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~VLDvGcG~G~~~~~la~~~~ 171 (322)
...+..||... ...|...++. ..++...++..+.+.+...+...- ......|+|.-||.|.++..++.+++
T Consensus 45 ~p~l~kywk~r-----yrlfsrfd~g--i~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~ 117 (263)
T KOG2730|consen 45 NPELFKYWKNR-----YRLFSRFDSG--IYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP 117 (263)
T ss_pred ChHHHHHHHHH-----HHHHHhhccc--eeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC
Confidence 34566666643 5555555544 222322234444444444443210 12467899999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEEc
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCL 226 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~ 226 (322)
.|++||++|.-+..|+++++-.|+.+|+ +|+++|+.++ ...+|+|+.+
T Consensus 118 ~VisIdiDPikIa~AkhNaeiYGI~~rI-------tFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 118 YVIAIDIDPVKIACARHNAEVYGVPDRI-------TFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred eEEEEeccHHHHHHHhccceeecCCcee-------EEEechHHHHHHHHhhhhheeeeeecC
Confidence 9999999999999999999999998877 9999998776 2345666654
No 197
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.53 E-value=5e-07 Score=80.41 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=71.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
++++|||+-|=||.++.+.+..|+ +|+.||.|..+++.+++++.-+++.. ..++|++.|+.+. .++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~------~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDL------DRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CC------TCEEEEES-HHHHHHHHHHTT-E
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc------cceEEEecCHHHHHHHHhcCCCC
Confidence 478999999999999999888887 69999999999999999998887642 2238999998763 5799
Q ss_pred cEEEEccc-ccccC---cchHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDV-LIHYP---QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~-l~~~~---~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|++--- +.-=. ......+++.+.+++.++|++.+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99998431 11000 11245667777777766765543
No 198
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.51 E-value=1.2e-06 Score=78.21 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V 223 (322)
-.+.+|||+|||.|..+-.+.+. -.+++++|.|+.|++.++..+....... . .........+.... ...|+|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~---~~~~~~~~~~~~~~-~~~DLv 106 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-N---AEWRRVLYRDFLPF-PPDDLV 106 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-c---chhhhhhhcccccC-CCCcEE
Confidence 35789999999999876655543 3469999999999999988776432211 0 00001111122222 234999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
++.++|..+++.....+++.+.....+ .+|++.+.+
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 999999999986677888888765555 555566654
No 199
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.50 E-value=8.7e-07 Score=79.85 Aligned_cols=103 Identities=24% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc-ccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK-DLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~---~~~fD~ 222 (322)
.++..|||--||||.++....-.|++++|+|++..|++-++.++...++.+- .+... |+..+ ++++|.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~--------~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDY--------PVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCce--------eEEEecccccCCCCCCccce
Confidence 4678999999999999999888899999999999999999999998875531 23444 77765 456999
Q ss_pred EEEcccccc------cC-cchHHHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLDVLIH------YP-QSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~~l~~------~~-~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|++-.-.-- .. ++-+.++++.+.+++++|+.+.+.
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 998432211 11 222567788888888888877664
No 200
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.49 E-value=3.5e-07 Score=81.83 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=69.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+++++++.+... ++..++|++||.|.++..+++.. .+|+|+|.++.|++.+++++.+ .+++ .+
T Consensus 6 Vll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri-------~~ 72 (296)
T PRK00050 6 VLLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRF-------TL 72 (296)
T ss_pred ccHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcE-------EE
Confidence 4667888888754 57899999999999999999883 6899999999999999988755 2233 88
Q ss_pred EEcccccC----CC---CccEEEEccccc
Q 020710 209 EVKDLESL----DG---KYDTVVCLDVLI 230 (322)
Q Consensus 209 ~~~d~~~~----~~---~fD~V~~~~~l~ 230 (322)
+.+|+.++ .. ++|.|++...+.
T Consensus 73 i~~~f~~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 73 VHGNFSNLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred EeCCHHHHHHHHHcCCCccCEEEECCCcc
Confidence 89988765 22 799999866543
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=5e-06 Score=67.70 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.8
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
...-+||||||+|..+..|++. +..+.++|++|.+++...+.+..++... ..++.|+..- .++.|+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~---------~~V~tdl~~~l~~~~VDv 113 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI---------DVVRTDLLSGLRNESVDV 113 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc---------ceeehhHHhhhccCCccE
Confidence 3678999999999999999887 3458899999999998887776655433 7788887653 689999
Q ss_pred EEEcccccc
Q 020710 223 VVCLDVLIH 231 (322)
Q Consensus 223 V~~~~~l~~ 231 (322)
++.+--..-
T Consensus 114 LvfNPPYVp 122 (209)
T KOG3191|consen 114 LVFNPPYVP 122 (209)
T ss_pred EEECCCcCc
Confidence 998876433
No 202
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.44 E-value=1.1e-06 Score=73.97 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=89.3
Q ss_pred HHHHHHhhhcCC-----CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEGS-----LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~~-----~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
..++++|..... ....++|||||=...+...-. .-..|+.||+++.- . .+.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-~~fdvt~IDLns~~----------~-------------~I~ 88 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-GWFDVTRIDLNSQH----------P-------------GIL 88 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccccc-CceeeEEeecCCCC----------C-------------Cce
Confidence 345555554321 123699999998766543321 13469999997621 1 344
Q ss_pred EcccccC------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE------EEEECCChhhHHHHHHhhccCCCC
Q 020710 210 VKDLESL------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL------ILSFAPKTFYYDLLKRVGELFPGP 276 (322)
Q Consensus 210 ~~d~~~~------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~------il~~~~~~~~~~~~~~~~~~~~~~ 276 (322)
+.|+.+. .++||+|.|+.||.++|++. ..+|++++.+.+.+.+ ++++.|..=
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--------------- 153 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--------------- 153 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------
Confidence 4554432 57999999999999999765 4689999999765444 344444321
Q ss_pred CCccccccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 277 SKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
..+..+.+.+.+..++...||..++.....+-.|
T Consensus 154 --v~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y 187 (219)
T PF11968_consen 154 --VTNSRYMTEERLREIMESLGFTRVKYKKSKKLAY 187 (219)
T ss_pred --hhcccccCHHHHHHHHHhCCcEEEEEEecCeEEE
Confidence 1122345788999999999999998766554333
No 203
>PLN02823 spermine synthase
Probab=98.43 E-value=2e-06 Score=78.64 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+.+||.||+|.|..+..+++. ..+|+.||+++++++.+++.+...... ..-.+++++.+|+... +++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~----~~dprv~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA----FCDKRLELIINDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc----ccCCceEEEEChhHHHHhhCCCCcc
Confidence 4679999999999999998886 357999999999999999987542210 0112348899997654 57899
Q ss_pred EEEEccccccc---Ccch--HHHHHH-HHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHY---PQSK--ADGMIA-HLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~---~~~~--~~~~l~-~l~~~~~~~~il~~~ 257 (322)
+|++-.. ... +... -.++++ .+++.++++|++.+.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9997521 111 1100 136777 788888777776653
No 204
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.40 E-value=1.3e-06 Score=76.42 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=95.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCC--cccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCG--TGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG--~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
+.++.+..+++... .--...|||||| |-.+...+++. .++|+-||++|-.+..++..+..... .+
T Consensus 53 R~Fl~RaVr~la~~--~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~------- 122 (267)
T PF04672_consen 53 RAFLRRAVRYLAEE--AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GR------- 122 (267)
T ss_dssp HHHHHHHHHHHHCT--T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SE-------
T ss_pred HHHHHHHHHHHHHh--cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-cc-------
Confidence 34566777777654 013569999999 44466667665 78999999999999999988766432 00
Q ss_pred CceEEcccccC---------CCCcc-----EEEEcccccccCc-chHHHHHHHHHhccCCeEEEEECCCh--hhHHHHHH
Q 020710 206 PKFEVKDLESL---------DGKYD-----TVVCLDVLIHYPQ-SKADGMIAHLASLAEKRLILSFAPKT--FYYDLLKR 268 (322)
Q Consensus 206 ~~~~~~d~~~~---------~~~fD-----~V~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~~~~--~~~~~~~~ 268 (322)
..++.+|+.++ .+-+| .|++..+|||++| +....+++.++..+.+|-++.+++.+ ........
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~ 202 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEA 202 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHH
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHH
Confidence 17999998775 13344 6888999999987 55789999999988777766554322 11222122
Q ss_pred hhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 269 VGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
+...+.. .....++.+.+++.++|. ||++++=......-|
T Consensus 203 ~~~~~~~--~~~~~~~Rs~~ei~~~f~--g~elvePGlv~~~~W 242 (267)
T PF04672_consen 203 LEAVYAQ--AGSPGRPRSREEIAAFFD--GLELVEPGLVPVPRW 242 (267)
T ss_dssp HHHHHHH--CCS----B-HHHHHHCCT--TSEE-TT-SEEGGGS
T ss_pred HHHHHHc--CCCCceecCHHHHHHHcC--CCccCCCceeccccc
Confidence 2222211 122345679999999987 999987555554444
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.1e-06 Score=74.93 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++++++.+... ++.+|||||+|.|.++..|++.+.+|+++++++.++...+++..... +++.+.+|+
T Consensus 19 ~~kIv~~a~~~---~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~----------n~~vi~~Da 85 (259)
T COG0030 19 IDKIVEAANIS---PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYD----------NLTVINGDA 85 (259)
T ss_pred HHHHHHhcCCC---CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccccc----------ceEEEeCch
Confidence 35555555443 57899999999999999999999999999999999999998875221 127889998
Q ss_pred ccC--CC--CccEEEEcccccccCc
Q 020710 214 ESL--DG--KYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 214 ~~~--~~--~fD~V~~~~~l~~~~~ 234 (322)
... +. .++.|+.+--. ++..
T Consensus 86 Lk~d~~~l~~~~~vVaNlPY-~Iss 109 (259)
T COG0030 86 LKFDFPSLAQPYKVVANLPY-NISS 109 (259)
T ss_pred hcCcchhhcCCCEEEEcCCC-cccH
Confidence 776 23 67888876543 4444
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.8e-06 Score=69.94 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhcc--CCCCCCC
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLAD--NGGEAPV 204 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~ 204 (322)
..+...++++|... ..++.+.||||.|+|+++..++.. |..+.|||.-++.|+.+++++...-... ..++.+-
T Consensus 66 p~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 66 PHMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred hHHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 34556777777743 357899999999999999888855 4446999999999999999987653210 1123334
Q ss_pred CCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 205 MPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 205 ~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
...++++|.... ..+||.|.|-....-+| +.+++.|.. ++++++-..
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~p----q~l~dqL~~--gGrllip~~ 194 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVGAAASELP----QELLDQLKP--GGRLLIPVG 194 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEccCccccH----HHHHHhhcc--CCeEEEeec
Confidence 457888887654 68999999975544333 266666542 344444443
No 207
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.29 E-value=4.1e-06 Score=72.21 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=92.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
+++.+|+|||||.-=++...... +..|+|+||+..+++.........+... ++...|+..- ....|+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~---------~~~v~Dl~~~~~~~~~Dl 174 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPH---------DARVRDLLSDPPKEPADL 174 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CE---------EEEEE-TTTSHTTSEESE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCc---------ceeEeeeeccCCCCCcch
Confidence 45789999999998888877766 5789999999999999999888777665 7888887654 677999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
.+..=+++-+........++-+..+..+.++++|...++.. +-..+. .. -..+++.++.+.||.+-
T Consensus 175 aLllK~lp~le~q~~g~g~~ll~~~~~~~~vVSfPtrSL~g----R~~gm~-------~~---y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 175 ALLLKTLPCLERQRRGAGLELLDALRSPHVVVSFPTRSLGG----RNKGME-------QT---YSAWFEALAAERGWIVD 240 (251)
T ss_dssp EEEET-HHHHHHHSTTHHHHHHHHSCESEEEEEEES-----------TTHH-------HC---HHHHHHHHCCTTCEEEE
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHhCCCeEEEecccccccc----Cccccc-------cC---HHHHHHHhcccCCceee
Confidence 99988876665433334456666666788889886554321 100010 11 25689999999999966
Q ss_pred EEeeeec
Q 020710 303 KRGLITT 309 (322)
Q Consensus 303 ~~~~~~~ 309 (322)
+.+..+.
T Consensus 241 ~~~~~~E 247 (251)
T PF07091_consen 241 RLTFGNE 247 (251)
T ss_dssp EEEETTE
T ss_pred eeecccc
Confidence 6554433
No 208
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.29 E-value=1e-05 Score=67.03 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=84.9
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
|+.....-+.+.++|... ...+.++||+-+|+|.++...+.+|+ +++.||.+...++..+++....+...++
T Consensus 23 RPT~drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~------ 95 (187)
T COG0742 23 RPTTDRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEA------ 95 (187)
T ss_pred CCCchHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccce------
Confidence 444445557777888761 14689999999999999999999977 5999999999999999999887755444
Q ss_pred CceEEcccccC----CC--CccEEEEcccccc-cCcchHHHHHHHH--HhccCCeEEEEECC
Q 020710 206 PKFEVKDLESL----DG--KYDTVVCLDVLIH-YPQSKADGMIAHL--ASLAEKRLILSFAP 258 (322)
Q Consensus 206 ~~~~~~d~~~~----~~--~fD~V~~~~~l~~-~~~~~~~~~l~~l--~~~~~~~~il~~~~ 258 (322)
.++..|+... .. .||+|+.---++. +.+. ...+..+ ..++.+++++.+..
T Consensus 96 -~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~--~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 96 -RVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDK--ELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred -EEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhH--HHHHHHHHhcCCcCCCcEEEEEe
Confidence 7888887632 33 4999998655541 1111 1222221 23466777666644
No 209
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.28 E-value=1.4e-07 Score=78.04 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
..+.++||+|+|.|..+..++..--+|++.++|..|....+++--. ..-..+..+.+-+||+|.|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~yn--------------Vl~~~ew~~t~~k~dli~cl 176 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYN--------------VLTEIEWLQTDVKLDLILCL 176 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCc--------------eeeehhhhhcCceeehHHHH
Confidence 3467999999999999999888766799999999998877654211 11112223335679999999
Q ss_pred ccccccCcchHHHHHHHHHhcc---CCeEEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLA---EKRLILSF 256 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~---~~~~il~~ 256 (322)
+.|.-.-++. ++++.++.++ .+.+|+.+
T Consensus 177 NlLDRc~~p~--kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 177 NLLDRCFDPF--KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhhcChH--HHHHHHHHHhccCCCcEEEEE
Confidence 9997776755 8888888764 44556544
No 210
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.27 E-value=1.4e-05 Score=64.10 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCcccchHHHHh-----c-CCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC--
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAK-----Q-GAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL-- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~-----~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~-- 216 (322)
.+..+|+|+|||.|+++..|+. . +.+|++||.++..++.+.++..+.. ...+ ..+..++..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKR-------LSFIQGDIADESS 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhcc-------chhhccchhhhcc
Confidence 4678999999999999999998 4 7899999999999999998887765 2222 26666665543
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
....++++....--.+.+ .+++...+
T Consensus 97 ~~~~~~~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 97 SDPPDILVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred cCCCeEEEEeecccchHH----HHHHHHHH
Confidence 567788887655444444 55555555
No 211
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=1.2e-05 Score=73.06 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD~V 223 (322)
++.+|||.-||.|.+++.+++.|.. |+++|++|.+++..++++.-+++.+++ ..+++|..+. . +.||-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v-------~~i~gD~rev~~~~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRV-------EPILGDAREVAPELGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcccee-------eEEeccHHHhhhccccCCEE
Confidence 4899999999999999999999876 999999999999999999988887755 8999998776 3 679999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++...- . ...++....++++.++++-+
T Consensus 261 im~~p~----~--a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 261 IMGLPK----S--AHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred EeCCCC----c--chhhHHHHHHHhhcCcEEEE
Confidence 986432 2 12444444444444665543
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.26 E-value=6.6e-06 Score=72.22 Aligned_cols=106 Identities=18% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CC-Cc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DG-KY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~-~f 220 (322)
++.+||-||.|.|..+..+.+.. .+++.||+++.+++.+++.+....... .-.+++++.+|.... .. +|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~----~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGL----DDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTG----GSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcccc----CCCceEEEEhhhHHHHHhccCCcc
Confidence 58899999999999999999884 589999999999999999887543210 002238899997553 45 89
Q ss_pred cEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|+.-..-...+... ..++++.+++.+.++|++...
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9999743321112111 258999999988888877653
No 213
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.25 E-value=8.4e-06 Score=76.02 Aligned_cols=71 Identities=30% Similarity=0.273 Sum_probs=58.6
Q ss_pred CCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
+.+|||++||+|.++..++.. + .+|+++|+++.+++.+++++..+++.+ +.+.++|+..+ .+.||+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~--------~~v~~~Da~~~l~~~~~fD~V 129 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN--------EKVFNKDANALLHEERKFDVV 129 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--------eEEEhhhHHHHHhhcCCCCEE
Confidence 468999999999999999876 4 379999999999999999998776543 26888898653 3679999
Q ss_pred EEcc
Q 020710 224 VCLD 227 (322)
Q Consensus 224 ~~~~ 227 (322)
++.-
T Consensus 130 ~lDP 133 (382)
T PRK04338 130 DIDP 133 (382)
T ss_pred EECC
Confidence 9753
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=98.25 E-value=1.9e-05 Score=69.46 Aligned_cols=96 Identities=16% Similarity=0.004 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
+.+++||=||.|.|..++.++++..+|+-|||++++++.+++.+.... .++ ++++++. .+.+. .++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~D------pRv~l~~-~~~~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNN------KNFTHAK-QLLDLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcC------CCEEEee-hhhhccCCcCCEE
Confidence 357899999999999999999996699999999999999999776532 222 1223333 22222 4789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++-.. .+ ..+++.+++.++++|++..
T Consensus 144 IvDs~-----~~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 144 ICLQE-----PD--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred EEcCC-----CC--hHHHHHHHHhcCCCcEEEE
Confidence 97543 22 2788889998888887766
No 215
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.19 E-value=1.1e-06 Score=82.33 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhhhc-CCCCCCeEEEECCCcccchHHHHhcCCEEEEE---eCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 131 SKTVENTMQMLNDE-GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSAS---DISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 131 ~~~~~~~~~~l~~~-~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
...++.+.+++... ....-..+||||||+|.|+.+|.+++..+..+ |..+.+++.|-++ |+.--+ .
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~------~ 168 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMI------G 168 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhh------h
Confidence 34455566666541 11233479999999999999999997654333 3344556555444 221100 0
Q ss_pred ceEEcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 207 KFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 207 ~~~~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
.+-..-+.-+++.||+|-|..++..+.... .-+|-++-|++.+||++.+....
T Consensus 169 ~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 169 VLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 111122333489999999999988776533 25778888999888888775443
No 216
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.19 E-value=1.5e-05 Score=76.07 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||++||.|.=+.++++. ...++++|+++..++..++++...++.+ +.+...|...+ .+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n--------v~v~~~D~~~~~~~~~~~ 183 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN--------VALTHFDGRVFGAALPET 183 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--------EEEEeCchhhhhhhchhh
Confidence 47889999999999999999886 3479999999999999999999887754 35666776543 568
Q ss_pred ccEEE----Ecc--cccccCcch--------------HHHHHHHHHhccCCeEEEEECCChhhH
Q 020710 220 YDTVV----CLD--VLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKTFYY 263 (322)
Q Consensus 220 fD~V~----~~~--~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~~~~ 263 (322)
||.|+ |+. ++..-|+.. -.++|+...+++++||++++...++..
T Consensus 184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 99999 543 232222110 146677777778888888776666444
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=4.4e-05 Score=64.77 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=79.2
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++||||.=||+.+...+.. +.+|+++|+++...+.+.+..+..+...++ +++++++.+-
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI-------~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKI-------TFIEGPALESLDELLADG 145 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccccee-------eeeecchhhhHHHHHhcC
Confidence 4679999999999999888876 789999999999999998888888877655 9999987553
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
.++||.++. .|..+. ....+.++-++.+.|++|.+.
T Consensus 146 ~~~tfDfaFv----DadK~n-Y~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 146 ESGTFDFAFV----DADKDN-YSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCceeEEEE----ccchHH-HHHHHHHHHhhcccccEEEEe
Confidence 588999995 455443 457788888888888877664
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=6.8e-06 Score=77.11 Aligned_cols=105 Identities=25% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----C---C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----D---G 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~---~ 218 (322)
..+..+||+.||||.++..+++.-.+|+||+++++.+..|++++..+++.| ++|+++-++++ . +
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisN--------a~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISN--------ATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccc--------eeeeecchhhccchhcccCCC
Confidence 456889999999999999999988899999999999999999999888765 69999966664 1 2
Q ss_pred CccEEEEcccccccCcchH-HHHHHHHHhcc--CCeEEEEECCChhhH
Q 020710 219 KYDTVVCLDVLIHYPQSKA-DGMIAHLASLA--EKRLILSFAPKTFYY 263 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~--~~~~il~~~~~~~~~ 263 (322)
+-++|.. ..-|...+ ..+++.++... +...+++|++.+...
T Consensus 454 ~~~~v~i----iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar 497 (534)
T KOG2187|consen 454 SETLVAI----IDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAAR 497 (534)
T ss_pred CCceEEE----ECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhh
Confidence 3343332 23333333 36677777653 555677887766443
No 219
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.5e-05 Score=71.03 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=76.4
Q ss_pred CCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
+.+||-||.|.|..++.+.++. .+++.|||++..++.+++.+....... .=++++.+..|..+. ..+||+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~----~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA----DDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc----CCCceEEEeccHHHHHHhCCCcCCE
Confidence 3699999999999999999995 579999999999999999987643110 002338888887554 458999
Q ss_pred EEEcccccccCc-ch--HHHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLDVLIHYPQ-SK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~~l~~~~~-~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
|++-..=. ... +. -..+++.+++.++++|+++..
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99754322 111 11 258999999988777777654
No 220
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.16 E-value=5.7e-05 Score=63.70 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=94.1
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
+..+.+++.. +.++.||||-.+++..+|.+.+ ..++++|+++.-++.|.+++.+.++..++ +...+
T Consensus 7 L~~va~~V~~-----~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i-------~vr~~ 74 (226)
T COG2384 7 LTTVANLVKQ-----GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERI-------DVRLG 74 (226)
T ss_pred HHHHHHHHHc-----CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceE-------EEecc
Confidence 4566666665 4559999999999999999884 36999999999999999999998887655 77788
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|.... +..+|+|+..++- -.....++++-..-+++---+++-|+. ...
T Consensus 75 dgl~~l~~~d~~d~ivIAGMG----G~lI~~ILee~~~~l~~~~rlILQPn~-------------------------~~~ 125 (226)
T COG2384 75 DGLAVLELEDEIDVIVIAGMG----GTLIREILEEGKEKLKGVERLILQPNI-------------------------HTY 125 (226)
T ss_pred CCccccCccCCcCEEEEeCCc----HHHHHHHHHHhhhhhcCcceEEECCCC-------------------------CHH
Confidence 86443 5579999876543 222456666655544432222222221 356
Q ss_pred HHHHHHHHCCCEEEEEeeee
Q 020710 289 DVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++++|...+|+++......
T Consensus 126 ~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 126 ELREWLSANSYEIKAETILE 145 (226)
T ss_pred HHHHHHHhCCceeeeeeeec
Confidence 88888999999877754443
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.12 E-value=1.5e-05 Score=67.75 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=60.7
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCE-EEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEE
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAI-VSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEV 210 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 210 (322)
+..+++.+. ..++...+|+|||.|......+-. +++ .+|||+.+...+.|+......... ...+.....+++..
T Consensus 31 ~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 31 VSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 344555544 347889999999999998777655 665 999999999888887544321100 00011122346778
Q ss_pred cccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 211 KDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 211 ~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|+.+. -...|+|++++.+ ++++....+.+.+..+.++-.||..
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 887653 1457999998864 3333233443333334344445543
No 222
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.11 E-value=3.6e-05 Score=67.42 Aligned_cols=158 Identities=21% Similarity=0.185 Sum_probs=88.8
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhcc---C-------CC-CC-
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLAD---N-------GG-EA- 202 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~-------~~-~~- 202 (322)
.+.+.+... ..++.++||||||.-..-..-+.. .-+++..|.++.-++..++.+.+.+.-+ - -+ ..
T Consensus 45 ~l~~~f~~g-~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 45 NLHETFSSG-GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHHTS-SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHHhCcc-CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 344444432 345779999999986553322322 4469999999999887776554321100 0 00 00
Q ss_pred --------CCC-CceEEcccccC---------CCCccEEEEcccccccCc--chHHHHHHHHHhccCCeEEEEEC---CC
Q 020710 203 --------PVM-PKFEVKDLESL---------DGKYDTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFA---PK 259 (322)
Q Consensus 203 --------~~~-~~~~~~d~~~~---------~~~fD~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~---~~ 259 (322)
... -.++..|+... +.+||+|++..+|+.... ++....++++.+++++||.+++. ..
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 000 03555666443 235999999999998763 44678888888888888766542 22
Q ss_pred hhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 260 TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
++| .. + .........+.+.+++.|+++||.+++.+
T Consensus 204 t~Y---------~v-G-~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 204 TYY---------MV-G-GHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp SEE---------EE-T-TEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred eeE---------EE-C-CEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 211 00 1 11122334589999999999999999877
No 223
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.08 E-value=1.4e-05 Score=77.47 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=76.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
.+..+||||||.|.++..+|.. ...++|+|++...+..+.++....++.| +.+.+.|+..+ ++++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N--------~~~~~~~~~~~~~~~~~~sv 418 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN--------FLLFPNNLDLILNDLPNNSL 418 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe--------EEEEcCCHHHHHHhcCcccc
Confidence 4668999999999999999988 4579999999999998888877766654 35677776433 6889
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEECC
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~~ 258 (322)
|.|++++.=-|..... -..+++.+++++++|+.+.+..
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9999754432222111 2578999999888777776643
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=1.2e-05 Score=66.32 Aligned_cols=103 Identities=28% Similarity=0.351 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
-.+++|||+|+|.|.-++..++.|+. |+..|+.|..++..+-+.+.++... .|...|+-..+..||+|+.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i---------~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSI---------LFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcccee---------EEeeccccCCCcceeEEEe
Confidence 46889999999999999999999874 9999999999888888888777654 8888887766789999999
Q ss_pred cccccccCcchHHHHHHHHHhcc-CCeEEEEECCCh
Q 020710 226 LDVLIHYPQSKADGMIAHLASLA-EKRLILSFAPKT 260 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~-~~~~il~~~~~~ 260 (322)
..++..-+. ...++.-..++. +|..++...|..
T Consensus 149 gDlfy~~~~--a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 149 GDLFYNHTE--ADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eceecCchH--HHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 998755443 446666444443 444456666544
No 225
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.05 E-value=6.1e-05 Score=69.03 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-----------------------------------------EEEEEeCCHHHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-----------------------------------------IVSASDISAAMVAE 185 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-----------------------------------------~v~gvD~s~~~l~~ 185 (322)
.++..++|-=||+|.+.+..+..+. .++|+|+++.|++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4557899999999999988876542 37799999999999
Q ss_pred HHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCccEEEEccccc-ccCcch-----HHHHHHHHHhccCCeEEEEE
Q 020710 186 ARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYDTVVCLDVLI-HYPQSK-----ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD~V~~~~~l~-~~~~~~-----~~~~l~~l~~~~~~~~il~~ 256 (322)
|+.++...++.+.+ .|.++|+..+ + +.+|+|+|+--.- -+.++. ...+.+.+++.+++....++
T Consensus 270 Ak~NA~~AGv~d~I-------~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 270 AKANARAAGVGDLI-------EFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHhcCCCceE-------EEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 99999999988755 9999999887 3 6899999975431 122221 23444555555555444443
No 226
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=8.1e-05 Score=65.78 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc-------------------cCC-CCCCC---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA-------------------DNG-GEAPV--- 204 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------------~~~-~~~~~--- 204 (322)
.+.+||--|||.|+++..|+..|...-|-++|--|+-...=.+...... +++ .+.++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 4568999999999999999999999999999988875433222110001 110 00000
Q ss_pred -------CCce--EEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHHH
Q 020710 205 -------MPKF--EVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLKR 268 (322)
Q Consensus 205 -------~~~~--~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~~ 268 (322)
.-.| -.+|+.+. .+.||+|+.+..+.--.. +-+.++.+.+++++||+.+ +.|-. +.+-..
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N--ileYi~tI~~iLk~GGvWiNlGPLl--YHF~d~ 305 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN--ILEYIDTIYKILKPGGVWINLGPLL--YHFEDT 305 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH--HHHHHHHHHHhccCCcEEEecccee--eeccCC
Confidence 1122 33565543 357999998755432222 5678888888887777664 33311 111000
Q ss_pred hhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 269 VGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.+. ......-++-+++..+...-||++++.+.+.
T Consensus 306 -----~g~-~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 306 -----HGV-ENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred -----CCC-cccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 000 0011123478999999999999999877554
No 227
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.04 E-value=0.00014 Score=60.85 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=87.7
Q ss_pred eEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc--CCCCccEEEEc
Q 020710 151 AVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES--LDGKYDTVVCL 226 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~fD~V~~~ 226 (322)
+++|||+|.|.-+..|+=. ..+++-+|.+..-+...+.-..+.++.| +++++..+++ ...+||+|++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n--------v~v~~~R~E~~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN--------VEVINGRAEEPEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS--------EEEEES-HHHTTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC--------EEEEEeeecccccCCCccEEEee
Confidence 7999999999999998765 6789999999999999888888888764 4888999888 48999999997
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.+- + +..+++.+..++++++.+.+.......+ ..++.++.+...|.++..+..
T Consensus 123 Av~----~--l~~l~~~~~~~l~~~G~~l~~KG~~~~~---------------------El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 123 AVA----P--LDKLLELARPLLKPGGRLLAYKGPDAEE---------------------ELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp SSS----S--HHHHHHHHGGGEEEEEEEEEEESS--HH---------------------HHHTHHHHHHCCCEEEEEEEE
T ss_pred hhc----C--HHHHHHHHHHhcCCCCEEEEEcCCChHH---------------------HHHHHHhHHHHhCCEEeeecc
Confidence 654 3 6688888888777777665433221111 123455666677777766544
Q ss_pred e
Q 020710 307 I 307 (322)
Q Consensus 307 ~ 307 (322)
.
T Consensus 176 ~ 176 (184)
T PF02527_consen 176 F 176 (184)
T ss_dssp E
T ss_pred c
Confidence 3
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=0.00029 Score=60.03 Aligned_cols=168 Identities=20% Similarity=0.146 Sum_probs=105.9
Q ss_pred HHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCC--CCeEEEECCCcccchHHHHhc--C
Q 020710 95 EVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLK--GIAVCDAGCGTGSLAIPLAKQ--G 170 (322)
Q Consensus 95 ~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~VLDvGcG~G~~~~~la~~--~ 170 (322)
+.+..|++-. ..|-+.|+-..-.+.. +.....+++.+......+ +.+++|||+|.|.-+..++-. .
T Consensus 22 ~~l~~Y~~lL--~~wN~~~NLt~~~~~~--------e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~ 91 (215)
T COG0357 22 EKLEAYVELL--LKWNKAYNLTAIRDPE--------ELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPD 91 (215)
T ss_pred HHHHHHHHHH--HHhhHhcCCCCCCCHH--------HHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccC
Confidence 3445566543 4666666643322211 112244444444332122 589999999999999998733 5
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC--CC-ccEEEEcccccccCcchHHHHHHHHHhc
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD--GK-YDTVVCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-fD~V~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
.+|+-+|....-+.-.++-..+.++.| +.++++.+++.. .. ||+|++-.+- + +..+..-+..+
T Consensus 92 ~~vtLles~~Kk~~FL~~~~~eL~L~n--------v~i~~~RaE~~~~~~~~~D~vtsRAva----~--L~~l~e~~~pl 157 (215)
T COG0357 92 LKVTLLESLGKKIAFLREVKKELGLEN--------VEIVHGRAEEFGQEKKQYDVVTSRAVA----S--LNVLLELCLPL 157 (215)
T ss_pred CcEEEEccCchHHHHHHHHHHHhCCCC--------eEEehhhHhhcccccccCcEEEeehcc----c--hHHHHHHHHHh
Confidence 679999999998888888888887764 488888888873 34 9999986654 2 55666666666
Q ss_pred cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 248 AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 248 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
++.++.+........ .. -..+.++.....|+.++.+...
T Consensus 158 lk~~g~~~~~k~~~~------------------~~---e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 158 LKVGGGFLAYKGLAG------------------KD---ELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred cccCCcchhhhHHhh------------------hh---hHHHHHHHHHhhcCcEEEEEEe
Confidence 655443322110000 00 1357778888888888775444
No 229
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=0.0002 Score=62.12 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=82.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.+|.-. ++.+|||-|.|+|.++..+++. -.+++..|+-+.-.+.|.+.+++.++.+.+ ++...
T Consensus 95 a~I~~~L~i~---PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~v-------t~~hr 164 (314)
T KOG2915|consen 95 AMILSMLEIR---PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNV-------TVTHR 164 (314)
T ss_pred HHHHHHhcCC---CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcce-------EEEEe
Confidence 4666777655 7999999999999999999988 257999999999999999999999987655 88888
Q ss_pred ccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhcc--CCeEEEEECC
Q 020710 212 DLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA--EKRLILSFAP 258 (322)
Q Consensus 212 d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~--~~~~il~~~~ 258 (322)
|+... ...+|.|+. .+|.|. ..+-++.+.+ +++.++.|.|
T Consensus 165 DVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred ecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccH
Confidence 88664 578999985 666654 5555555543 4445666654
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.00 E-value=5e-05 Score=70.53 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=65.9
Q ss_pred CCeEEEECCCcccchHHHHhc--CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
+.+|||+.||+|..+..++.+ |. +|+++|+++.+++.+++++..++..+ +++.+.|+... ..+||
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~--------~~v~~~Da~~~l~~~~~~fD 116 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN--------IEVPNEDAANVLRYRNRKFH 116 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--------EEEEchhHHHHHHHhCCCCC
Confidence 358999999999999999987 44 69999999999999999997765432 37888887765 36799
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCe
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKR 251 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 251 (322)
+|...- + ..+. .++..+.+....+
T Consensus 117 vIdlDP-f-Gs~~----~fld~al~~~~~~ 140 (374)
T TIGR00308 117 VIDIDP-F-GTPA----PFVDSAIQASAER 140 (374)
T ss_pred EEEeCC-C-CCcH----HHHHHHHHhcccC
Confidence 998754 3 3333 4555554433333
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.98 E-value=6.8e-05 Score=66.57 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=68.6
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...+++++.+... ++..|||||+|.|.++..|++.+.+|+++|+++.+++..++++.... +++++.+
T Consensus 17 ~~~~~Iv~~~~~~---~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~----------~~~vi~~ 83 (262)
T PF00398_consen 17 NIADKIVDALDLS---EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNP----------NVEVING 83 (262)
T ss_dssp HHHHHHHHHHTCG---TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCS----------SEEEEES
T ss_pred HHHHHHHHhcCCC---CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcc----------cceeeec
Confidence 3456677776543 68899999999999999999999999999999999999988775211 1378899
Q ss_pred ccccCC------CCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 212 DLESLD------GKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 212 d~~~~~------~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
|+...+ +....|+++--. ++. ..++.++..
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEETG-TGH----HHHHHHHHH
T ss_pred chhccccHHhhcCCceEEEEEecc-cch----HHHHHHHhh
Confidence 988763 234456654332 332 355555544
No 232
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=5.3e-05 Score=64.70 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=88.4
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++...+.... ..++..+||||+.||.|+..+.++|+ +|+|+|..-.++..--+.-. |+ +.+...|
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~------rV------~~~E~tN 132 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDP------RV------IVLERTN 132 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCC------cE------EEEecCC
Confidence 34444444332 25788999999999999999999977 59999998877654322211 11 1334444
Q ss_pred cccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCe-EEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 213 LESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKR-LILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 213 ~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+..+ .+..|+++|--++.. +..+|-.+..++.++ -++.+..+.+--. -+.++ -.+.-........-
T Consensus 133 ~r~l~~~~~~~~~d~~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEag-r~~v~--kkGvv~d~~~~~~v 204 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVIDVSFIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAG-REQVG--KKGVVRDPKLHAEV 204 (245)
T ss_pred hhhCCHHHcccCCCeEEEEeehhh-----HHHHHHHHHHhcCCCceEEEEecchhhhh-hhhcC--cCceecCcchHHHH
Confidence 4433 457899998766543 456777777766544 3333333222100 01111 00111111111224
Q ss_pred HHHHHHHHHHCCCEEEEEeee
Q 020710 287 EADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~ 307 (322)
...+++++.+.||.+......
T Consensus 205 ~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 205 LSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred HHHHHHHHhhcCcEEeeeEcc
Confidence 678899999999998875443
No 233
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.90 E-value=0.00015 Score=73.18 Aligned_cols=75 Identities=32% Similarity=0.427 Sum_probs=61.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--------------------------------------------CCEEEEEeCCHHHH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--------------------------------------------GAIVSASDISAAMV 183 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--------------------------------------------~~~v~gvD~s~~~l 183 (322)
++..++|.+||+|.+.+..+.. ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4679999999999999877541 12689999999999
Q ss_pred HHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccEEEEcccc
Q 020710 184 AEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVVCLDVL 229 (322)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~~~~~l 229 (322)
+.|++++...++.+.+ .|.++|+.++ .++||+|+++--+
T Consensus 270 ~~A~~N~~~~g~~~~i-------~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 270 QAARKNARRAGVAELI-------TFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHcCCCcce-------EEEeCChhhcccccccCCCCEEEECCCC
Confidence 9999999998886544 8999998775 2569999998644
No 234
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.78 E-value=5.4e-05 Score=63.25 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHhhhcC-CC--CCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHH
Q 020710 135 ENTMQMLNDEG-SL--KGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAA 181 (322)
Q Consensus 135 ~~~~~~l~~~~-~~--~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~ 181 (322)
-++.+.+...+ .. ++.+|||+||++|.++..+.+++ .+|+|+|+.+.
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34455554443 12 45899999999999999999997 78999999875
No 235
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.75 E-value=0.00022 Score=56.81 Aligned_cols=92 Identities=34% Similarity=0.405 Sum_probs=59.8
Q ss_pred EEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc--C--C--CCccE
Q 020710 152 VCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES--L--D--GKYDT 222 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~--~--~~fD~ 222 (322)
++|+|||+|... .+... +..++++|+++.++..++..... ..... +.+...|... . . ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGL-------VDFVVADALGGVLPFEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCc-------eEEEEeccccCCCCCCCCCceeE
Confidence 999999999966 33333 35899999999999985544432 21100 1567777554 2 3 37999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
+ +.....+... ....+..+.+.+++++.+.
T Consensus 123 ~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~ 152 (257)
T COG0500 123 V-ISLLVLHLLP--PAKALRELLRVLKPGGRLV 152 (257)
T ss_pred E-eeeeehhcCC--HHHHHHHHHHhcCCCcEEE
Confidence 9 5555544444 4578888888765555443
No 236
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.74 E-value=0.00014 Score=66.19 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHh---------cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAK---------QGAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.++.+.+++... ++.+|||.+||+|.++..+.+ ...+++|+|+++.++..++-++.-.+....
T Consensus 34 i~~l~~~~~~~~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~----- 105 (311)
T PF02384_consen 34 IVDLMVKLLNPK---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS----- 105 (311)
T ss_dssp HHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB-----
T ss_pred HHHHHHhhhhcc---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc-----
Confidence 445555666433 566899999999999888776 356899999999999999877755554431
Q ss_pred CCCceEEcccccC-----CCCccEEEEcccc
Q 020710 204 VMPKFEVKDLESL-----DGKYDTVVCLDVL 229 (322)
Q Consensus 204 ~~~~~~~~d~~~~-----~~~fD~V~~~~~l 229 (322)
...+..+|.... ...||+|+++--+
T Consensus 106 -~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf 135 (311)
T PF02384_consen 106 -NINIIQGDSLENDKFIKNQKFDVIIGNPPF 135 (311)
T ss_dssp -GCEEEES-TTTSHSCTST--EEEEEEE--C
T ss_pred -cccccccccccccccccccccccccCCCCc
Confidence 113677775433 3689999997544
No 237
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.66 E-value=0.00049 Score=60.96 Aligned_cols=101 Identities=26% Similarity=0.248 Sum_probs=59.9
Q ss_pred CCCeEEEECCCcccc-hHHHHhc---CCEEEEEeCCHHHHHHHHHHhH-HhhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 148 KGIAVCDAGCGTGSL-AIPLAKQ---GAIVSASDISAAMVAEARKKAE-EELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~-~~~la~~---~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
.+.+|+=||||.==+ +..++++ +..|+++|+++++++.+++... ..++..++ .|+++|..+. -..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m-------~f~~~d~~~~~~dl~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRM-------SFITADVLDVTYDLKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSE-------EEEES-GGGG-GG---
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCe-------EEEecchhcccccccc
Confidence 356999999996544 4455544 5679999999999999998877 55666655 8999998766 268
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|+..... -+..+...++++++.+..++|..+.+
T Consensus 193 ~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 193 YDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred CCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9999987655 33333467999999998776666554
No 238
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.62 E-value=0.00016 Score=57.82 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred eEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCC
Q 020710 151 AVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDG 218 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 218 (322)
++||||||.|.++..+++.+ ++++++|+++.+.+.+++++...+..+ +.++...+.+-++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~--------v~~~~~al~~~~g 62 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN--------VVLLNAAVGDRDG 62 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc--------EEEEEeeeeCCCC
Confidence 48999999999999998884 469999999999999999987665432 2666666554433
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.55 E-value=0.00051 Score=61.45 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHhhhcC--CCCCCeEEEECCCcccchHHHH--hcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEG--SLKGIAVCDAGCGTGSLAIPLA--KQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~--~~~~~~VLDvGcG~G~~~~~la--~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~ 209 (322)
..+.++|.... .....++||||||....=..|. ..+++++|+|+++..++.|+++...+ .+..++ ..+
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I-------~l~ 159 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRI-------ELR 159 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTE-------EEE
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccce-------EEE
Confidence 44455555432 1125689999999875533333 23999999999999999999999887 776644 444
Q ss_pred Ecc----ccc-C---CCCccEEEEcccccccCc
Q 020710 210 VKD----LES-L---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d----~~~-~---~~~fD~V~~~~~l~~~~~ 234 (322)
... +.. . ...||+.+|+--++.-.+
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS--
T ss_pred EcCCccccchhhhcccceeeEEecCCccccChh
Confidence 332 111 1 468999999988755443
No 240
>PRK10742 putative methyltransferase; Provisional
Probab=97.54 E-value=0.00056 Score=59.34 Aligned_cols=81 Identities=17% Similarity=0.056 Sum_probs=60.1
Q ss_pred eEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC-CCCceEEcccccC----CCCccEEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAP-VMPKFEVKDLESL----DGKYDTVVC 225 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~----~~~fD~V~~ 225 (322)
+|||+-+|+|..++.++..|++|+++|-++.+....++.+........+.... .++..+.+|..+. ...||+|++
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 89999999999999999999999999999999988888776531110000000 1237778886554 457999998
Q ss_pred cccccc
Q 020710 226 LDVLIH 231 (322)
Q Consensus 226 ~~~l~~ 231 (322)
--.+.|
T Consensus 171 DPMfp~ 176 (250)
T PRK10742 171 DPMFPH 176 (250)
T ss_pred CCCCCC
Confidence 776665
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.54 E-value=0.0014 Score=59.33 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
..+||-+|.|.|.-.+.+.+. -.+++-||++|+|++.+++...-...+ .-...-++++.+..|+.+. ...||.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N-~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALN-QGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhc-cCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 468999999999999999988 347999999999999998554321111 0011223457788887765 568999
Q ss_pred EEEcccccccCcch--------HHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSK--------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~--------~~~~l~~l~~~~~~~~il~~ 256 (322)
|+. .++||. -.++...+++.++.+|++..
T Consensus 369 vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 369 VIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred EEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 994 566543 13556666665555554443
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.52 E-value=0.00048 Score=62.41 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.++|||||++|.++..+.++|.+|++||..+ |- ..+... .+ +.....|.... .+.+|.|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~---~~-------V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDT---GQ-------VEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCC---CC-------EEEEeccCcccCCCCCCCCEE
Confidence 4788999999999999999999999999999654 21 111111 11 25666665432 5679999
Q ss_pred EEccc
Q 020710 224 VCLDV 228 (322)
Q Consensus 224 ~~~~~ 228 (322)
+|-.+
T Consensus 275 VcDmv 279 (357)
T PRK11760 275 VCDMV 279 (357)
T ss_pred EEecc
Confidence 98765
No 243
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.51 E-value=0.00041 Score=62.40 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=68.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
..+++.+++.+... ++..++|.-||.|..+..+++. ..+|+|+|.++.+++.+++++.... .++ .+
T Consensus 6 pVll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~-------~~ 73 (305)
T TIGR00006 6 SVLLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRV-------VL 73 (305)
T ss_pred chhHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcE-------EE
Confidence 34668888888754 5789999999999999999986 4789999999999999999886542 223 77
Q ss_pred EEcccccC--------CCCccEEEEcccc
Q 020710 209 EVKDLESL--------DGKYDTVVCLDVL 229 (322)
Q Consensus 209 ~~~d~~~~--------~~~fD~V~~~~~l 229 (322)
+.+++.++ .+++|.|++.-.+
T Consensus 74 i~~nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 74 IHDNFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred EeCCHHHHHHHHHhcCCCcccEEEEeccC
Confidence 88877664 2568999986554
No 244
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0036 Score=57.98 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----D 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 217 (322)
.++.+|||..++.|.=+.++++. |..|+++|+|+.-++..++++...+..+ +.....|.... .
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n--------v~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN--------VIVVNKDARRLAELLPG 226 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc--------eEEEecccccccccccc
Confidence 57899999999999999998887 4568999999999999999999988865 25666665432 2
Q ss_pred -CCccEEEE------cccccccCcc------h--------HHHHHHHHHhccCCeEEEEECCChhh
Q 020710 218 -GKYDTVVC------LDVLIHYPQS------K--------ADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 218 -~~fD~V~~------~~~l~~~~~~------~--------~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
++||.|++ ..++.--|+- . -.++|....+++++||++.+...+..
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 35999996 2333222321 0 13466666667788888877665544
No 245
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=8.7e-05 Score=64.93 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.++.+++... ..+..++|+|||.|-....- -.+.++|.|++...+..+++.-.. .....|+.
T Consensus 34 p~v~qfl~~~--~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~--------------~~~~ad~l 95 (293)
T KOG1331|consen 34 PMVRQFLDSQ--PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGD--------------NVCRADAL 95 (293)
T ss_pred HHHHHHHhcc--CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCc--------------eeehhhhh
Confidence 3445555544 24778999999999864321 256799999999888877654321 35566665
Q ss_pred cC---CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL 252 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~ 252 (322)
.+ +.+||.++...++||+.... ...+++++.+.+++|+
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGG 137 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 54 78999999999999998544 4678898888765444
No 246
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.46 E-value=0.00038 Score=68.09 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCeEEEECCCcccchHHHHhcC----------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG----------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE--- 214 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~--- 214 (322)
...+|||.|||+|.++..+++.. .+++|+|+++.++..++.++...+... +.....|..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~--------~~i~~~d~l~~~ 102 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE--------INVINFNSLSYV 102 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC--------ceeeeccccccc
Confidence 35689999999999998887641 468999999999999998876654110 023333311
Q ss_pred -----cCCCCccEEEEccccc
Q 020710 215 -----SLDGKYDTVVCLDVLI 230 (322)
Q Consensus 215 -----~~~~~fD~V~~~~~l~ 230 (322)
+..+.||+|+++--..
T Consensus 103 ~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 103 LLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccccccCcccEEEeCCCcc
Confidence 1136899999986544
No 247
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.45 E-value=0.00025 Score=58.23 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=58.5
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC-CCccEEEEcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD-GKYDTVVCLD 227 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~fD~V~~~~ 227 (322)
...+.|+|.|+|.++...++...+|++++.+|...+.|++++.-.+.. +++.+.+|+.+.+ ...|+|+|-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~--------n~evv~gDA~~y~fe~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV--------NWEVVVGDARDYDFENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc--------ceEEEecccccccccccceeHHHH
Confidence 468999999999999988888778999999999999999887544443 2488999998764 4789999843
No 248
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.44 E-value=0.002 Score=54.79 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=67.7
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
++++...++.-+......++.+||-+|..+|....+++.- ...|++|++|+...+..-..+++.. |+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----------NI 124 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----------NI 124 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----------TE
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----------ce
Confidence 4455566655555444567899999999999999998876 3479999999977665554443321 22
Q ss_pred ceEEcccccC------CCCccEEEEcccccccCc-chHHHHHHHHHhccCCeEEEE
Q 020710 207 KFEVKDLESL------DGKYDTVVCLDVLIHYPQ-SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 207 ~~~~~d~~~~------~~~fD~V~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~ 255 (322)
--+..|+..+ -+..|+|++- +.. ++.+-++.+....++.+|.+.
T Consensus 125 iPIl~DAr~P~~Y~~lv~~VDvI~~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLVEMVDVIFQD-----VAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEEES-TTSGGGGTTTS--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeccCCChHHhhcccccccEEEec-----CCChHHHHHHHHHHHhhccCCcEEE
Confidence 5677888665 4689999963 332 334556666666666655443
No 249
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0011 Score=55.62 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
....+.+.. ++.+||+||-|.|.....+.+. -.+-+.|+..|..++..+...-... .++....+-.
T Consensus 92 ha~A~ai~t----kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek---------~nViil~g~W 158 (271)
T KOG1709|consen 92 HALAEAIST----KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK---------ENVIILEGRW 158 (271)
T ss_pred HHHHHHHhh----CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc---------cceEEEecch
Confidence 444444443 5899999999999999888887 3457789999999988776542211 1124444443
Q ss_pred ccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
++. ++.||-|+--..-+|..+ +..+.+++.+++++++++++...
T Consensus 159 eDvl~~L~d~~FDGI~yDTy~e~yEd--l~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYYDTYSELYED--LRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred HhhhccccccCcceeEeechhhHHHH--HHHHHHHHhhhcCCCceEEEecC
Confidence 332 788999986554466656 77889999999999999987543
No 250
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.41 E-value=0.0062 Score=53.93 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C----
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D---- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~---- 217 (322)
...|+.+|||.-.-...+... +.+++=+|. |++++.-++.+.+.+... ..+..++..|+.+. .
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~-----~~~~~~v~~Dl~~~w~~~L~~~gfd 155 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEP-----PAHRRAVPVDLRQDWPAALAAAGFD 155 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCC-----CCceEEeccCchhhHHHHHHhCCCC
Confidence 446999999987776666433 456666665 567766666666543211 11226777776521 1
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeE--EEEECCC--h-hhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL--ILSFAPK--T-FYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~--il~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+.--++++-.++.+++.+....+++.+.+...+|. ++..... . ......+...+...+.......+..++++++
T Consensus 156 ~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred CCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 23347777788899999889999999988763443 3333322 1 0000111111111111122233445789999
Q ss_pred HHHHHCCCEEEEE
Q 020710 292 RALQKVGWKIRKR 304 (322)
Q Consensus 292 ~~l~~aGf~vv~~ 304 (322)
++|.+.||++...
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 9999999999765
No 251
>PHA01634 hypothetical protein
Probab=97.30 E-value=0.0019 Score=49.72 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=42.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhh
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.+.+|+|||.+.|..+++++-+|++ |+++++++...+..++......+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4889999999999999999999885 99999999999999887765433
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00045 Score=55.39 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=63.6
Q ss_pred CCCeEEEECCCc-ccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C-CCC
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L-DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~~ 219 (322)
.+.+|||+|.|- |..+..++.. ...|.-.|-++..++..++....+.... ...+.....+... . ...
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-----~tsc~vlrw~~~~aqsq~eq~t 103 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS-----LTSCCVLRWLIWGAQSQQEQHT 103 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc-----cceehhhHHHHhhhHHHHhhCc
Confidence 467899999994 4445555544 4579999999999887776554331110 0111122222111 1 468
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEECCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPK 259 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~ 259 (322)
||.|+|.+++- +. +....+.+.+++++++.+ -+.+.|.
T Consensus 104 FDiIlaADClF-fd-E~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 104 FDIILAADCLF-FD-EHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ccEEEeccchh-HH-HHHHHHHHHHHHHhCcccceeEecCc
Confidence 99999999873 32 234678888888764433 5555553
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0072 Score=50.47 Aligned_cols=108 Identities=18% Similarity=0.104 Sum_probs=75.8
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
.+++...++.-+...+..++.+||=+|..+|....+++.- + ..+++|++|+.+....-..+.+.. ++-
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~----------Ni~ 127 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP----------NII 127 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----------Cce
Confidence 4566677777777665678999999999999999999887 3 469999999988877665555432 235
Q ss_pred eEEcccccC------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE
Q 020710 208 FEVKDLESL------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL 252 (322)
Q Consensus 208 ~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~ 252 (322)
-+..|+..+ -+..|+|++ .+.++. .+-+..+....++.+|
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEE-----ecCCchHHHHHHHHHHHhcccCC
Confidence 677888765 467999985 554433 3344555555554444
No 254
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0062 Score=48.18 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=65.1
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.++.+++++... +.++.+|+|+|.|+.-...++.| ...+|+++++=.+..++-+.-..+...+. .|..
T Consensus 59 eQv~nVLSll~~n---~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~t-------rf~R 128 (199)
T KOG4058|consen 59 EQVENVLSLLRGN---PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKST-------RFRR 128 (199)
T ss_pred HHHHHHHHHccCC---CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccch-------hhhh
Confidence 3456777777765 56899999999999999888888 45899999999999998877776665544 7888
Q ss_pred cccccCC-CCccEEEEccc
Q 020710 211 KDLESLD-GKYDTVVCLDV 228 (322)
Q Consensus 211 ~d~~~~~-~~fD~V~~~~~ 228 (322)
-|+-..+ ..|..|+...+
T Consensus 129 kdlwK~dl~dy~~vviFga 147 (199)
T KOG4058|consen 129 KDLWKVDLRDYRNVVIFGA 147 (199)
T ss_pred hhhhhccccccceEEEeeh
Confidence 8876652 33444544433
No 255
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0031 Score=59.37 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=71.3
Q ss_pred CeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVC 225 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~ 225 (322)
.++|-+|||.-.+...+.+.|.+ ++.+|+|+..++....+....... ..+...|+..+ +.+||+|+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~---------~~~~~~d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPE---------MQMVEMDMDQLVFEDESFDIVID 120 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcc---------eEEEEecchhccCCCcceeEEEe
Confidence 38999999999999988888875 999999999998887766432222 27888888776 899999999
Q ss_pred cccccccCcch--------HHHHHHHHHhccCCeE
Q 020710 226 LDVLIHYPQSK--------ADGMIAHLASLAEKRL 252 (322)
Q Consensus 226 ~~~l~~~~~~~--------~~~~l~~l~~~~~~~~ 252 (322)
...++++-.++ +...+.++.+++..++
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 99998865322 2345667777654433
No 256
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.04 E-value=0.012 Score=52.70 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=77.6
Q ss_pred eEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVV 224 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~ 224 (322)
+|+|+.||.|.+...+...|.+ +.++|+++.+++..+.++.. ....+|+.+. .+.+|+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~--------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN--------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC--------------CCccCccccCchhhcCCCCCEEE
Confidence 6999999999999999888887 78899999999988877643 2344555443 35799999
Q ss_pred EcccccccCc--------chHHHHHHHHHhc---cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 225 CLDVLIHYPQ--------SKADGMIAHLASL---AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 225 ~~~~l~~~~~--------~~~~~~l~~l~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
...-...+.. +....++.+..++ .++..++.-+-..+.. ..+ ....+.+.+.
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~---------------~~~--~~~~~~i~~~ 130 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLT---------------HDN--GNTLKVILNT 130 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhc---------------cCc--hHHHHHHHHH
Confidence 8765443331 1122233333332 3455544432222110 000 0124678888
Q ss_pred HHHCCCEEEEEeee
Q 020710 294 LQKVGWKIRKRGLI 307 (322)
Q Consensus 294 l~~aGf~vv~~~~~ 307 (322)
|++.||.+....+.
T Consensus 131 l~~~GY~~~~~~l~ 144 (275)
T cd00315 131 LEELGYNVYWKLLN 144 (275)
T ss_pred HHhCCcEEEEEEEE
Confidence 89999987654443
No 257
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.04 E-value=0.0071 Score=54.27 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 218 (322)
.++.+|||..++.|.=+..+++. ...+++.|+++.-++..++++...+..+ +.....|.... ..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~--------v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN--------VIVINADARKLDPKKPES 155 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS--------EEEEESHHHHHHHHHHTT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce--------EEEEeecccccccccccc
Confidence 46889999999999999999887 3589999999999999999999888764 24444666544 34
Q ss_pred CccEEEE----c--ccccccCcc-------h-------HHHHHHHHHhcc----CCeEEEEECCChhh
Q 020710 219 KYDTVVC----L--DVLIHYPQS-------K-------ADGMIAHLASLA----EKRLILSFAPKTFY 262 (322)
Q Consensus 219 ~fD~V~~----~--~~l~~~~~~-------~-------~~~~l~~l~~~~----~~~~il~~~~~~~~ 262 (322)
.||.|+. + .++..-|+- . -.++|+...+.+ ++||.+.+...++.
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 6999996 2 233333321 0 135677777778 88888877666543
No 258
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.012 Score=49.78 Aligned_cols=74 Identities=20% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
-+++++..+.. ..++..|+|+|+-.|.++..+++. + ..|+|+|+.|-- .+..+.+++
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-------------------~~~~V~~iq 91 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-------------------PIPGVIFLQ 91 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-------------------cCCCceEEe
Confidence 45555555443 346789999999999999999988 3 349999997631 112248999
Q ss_pred cccccC-----------CCCccEEEEcc
Q 020710 211 KDLESL-----------DGKYDTVVCLD 227 (322)
Q Consensus 211 ~d~~~~-----------~~~fD~V~~~~ 227 (322)
+|+... ...+|+|++-+
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecC
Confidence 998764 34479999743
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.01 E-value=0.00053 Score=51.82 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=36.6
Q ss_pred EEECCCcccchHHHHhc---C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccE
Q 020710 153 CDAGCGTGSLAIPLAKQ---G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDT 222 (322)
Q Consensus 153 LDvGcG~G~~~~~la~~---~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 222 (322)
||||+..|..+..+++. . .+++++|..+. .+..++..++.+...++ +++.+|..+. .++||+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~-------~~~~g~s~~~l~~~~~~~~dl 72 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRV-------EFIQGDSPDFLPSLPDGPIDL 72 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTE-------EEEES-THHHHHHHHH--EEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeE-------EEEEcCcHHHHHHcCCCCEEE
Confidence 69999999999888764 2 37999999985 33334444444444433 8899987654 489999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+.-.. |-. +.....++.+...+.+++++.+
T Consensus 73 i~iDg~--H~~-~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 73 IFIDGD--HSY-EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEEES-----H-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEECCC--CCH-HHHHHHHHHHHHHcCCCeEEEE
Confidence 997542 221 2245667777776777777765
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.92 E-value=0.1 Score=45.18 Aligned_cols=138 Identities=19% Similarity=0.149 Sum_probs=75.5
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHH--hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLA--KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+...++...+...+++||=||-.--. +..++ ....+|+.+|+++.+++..++.+.+.++.. +.+..|+
T Consensus 32 ~Ra~~~~~~gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i---------~~~~~Dl 101 (243)
T PF01861_consen 32 RRAALMAERGDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI---------EAVHYDL 101 (243)
T ss_dssp HHHHHHHHTT-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E---------EEE---T
T ss_pred HHHHHHHhcCcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce---------EEEEecc
Confidence 34455555555678999999955433 33333 236789999999999999999999988765 8888898
Q ss_pred ccC-----CCCccEEEEcccccccCcchHHHHHHHHHhcc-CC--eEEEEECCChhhHHHHHHhhccCCCCCCccccccC
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EK--RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~-~~--~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
.+. .++||++++--.. ..+.+.-++.+-...+ +. .+++.+.+......
T Consensus 102 R~~LP~~~~~~fD~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~--------------------- 157 (243)
T PF01861_consen 102 RDPLPEELRGKFDVFFTDPPY---TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPD--------------------- 157 (243)
T ss_dssp TS---TTTSS-BSEEEE---S---SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HH---------------------
T ss_pred cccCCHHHhcCCCEEEeCCCC---CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHH---------------------
Confidence 664 5899999974321 1133556676666644 23 34555654331100
Q ss_pred CHHHHHHHHHHCCCEEEEEeee
Q 020710 286 AEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
.-.++++.+.+.||-+...-..
T Consensus 158 ~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 158 KWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp HHHHHHHHHHTS--EEEEEEEE
T ss_pred HHHHHHHHHHHCCcCHHHHHhh
Confidence 0126778888889887765433
No 261
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0086 Score=51.02 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=63.0
Q ss_pred cCchhHHHHHHHHhhhcC---CCCCCeEEEECCCcccch--HHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCC
Q 020710 128 LGHSKTVENTMQMLNDEG---SLKGIAVCDAGCGTGSLA--IPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGE 201 (322)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~---~~~~~~VLDvGcG~G~~~--~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~ 201 (322)
++....+..+.++|.... .+++.++||||.|.--.= .-..+.|++.+|.|+++..++.|+.....+ ++...+
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I-- 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI-- 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe--
Confidence 344556677777776542 245678999987754321 112244899999999999999999888765 333322
Q ss_pred CCCCCceEEc-c-------cccCCCCccEEEEcccccc
Q 020710 202 APVMPKFEVK-D-------LESLDGKYDTVVCLDVLIH 231 (322)
Q Consensus 202 ~~~~~~~~~~-d-------~~~~~~~fD~V~~~~~l~~ 231 (322)
+.+.. | +...++.||.++|+--+|.
T Consensus 133 -----~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 133 -----RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred -----eEEeccCccccccccccccceeeeEecCCCcch
Confidence 33222 1 1112688999999988754
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=96.44 E-value=0.0094 Score=53.54 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
..++++++.... .++..|||.-||+|..+....+.|.+++|+|++++-++.|++++..
T Consensus 195 ~~L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345555555544 3589999999999999999888899999999999999999999753
No 263
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.43 E-value=0.0033 Score=54.22 Aligned_cols=82 Identities=22% Similarity=0.155 Sum_probs=44.6
Q ss_pred CeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC-CCCCCCCceEEcccccC----CCCccEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG-GEAPVMPKFEVKDLESL----DGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~----~~~fD~V~ 224 (322)
.+|||.-||.|..+..++..|++|+++|-||-+....+.-+......... .....+++++.+|..+. +.+||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 48999999999999999988999999999997765555433221110000 00001237888887664 68999999
Q ss_pred Ecccccc
Q 020710 225 CLDVLIH 231 (322)
Q Consensus 225 ~~~~l~~ 231 (322)
+--++.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 9777765
No 264
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.41 E-value=0.0057 Score=55.09 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.++..+++.|... +++.++|.--|.|.++..+++. +++|+|+|.++.+++.+++++... .+++ .++
T Consensus 7 Vll~Evl~~L~~~---~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~-------~~~ 74 (310)
T PF01795_consen 7 VLLKEVLEALNPK---PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRF-------IFI 74 (310)
T ss_dssp TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTE-------EEE
T ss_pred ccHHHHHHhhCcC---CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceE-------EEE
Confidence 4678888888854 6789999999999999999987 689999999999999998877643 2222 666
Q ss_pred EcccccC---------CCCccEEEEc
Q 020710 210 VKDLESL---------DGKYDTVVCL 226 (322)
Q Consensus 210 ~~d~~~~---------~~~fD~V~~~ 226 (322)
..++.++ .+.+|.|+.-
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEEc
Confidence 6666554 1356666653
No 265
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.0018 Score=51.61 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHH----HHhhccCCCCCCccccccCCHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLL----KRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+++.|+|++..+++|+.-++...+++++++.++++|++.+. |+..+.++. -..+..++..+ ..+...++.+.+.
T Consensus 45 dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndh-P~~r~v~t~r~m~ 123 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDH-PLHRIVKTMRMMF 123 (185)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCC-cHHHHHHHHHHHH
Confidence 78999999999999999888889999999999999988775 332222221 11222222111 1222233566677
Q ss_pred HHHHHCCCEE
Q 020710 292 RALQKVGWKI 301 (322)
Q Consensus 292 ~~l~~aGf~v 301 (322)
+.+.++||.+
T Consensus 124 n~~m~~~~~~ 133 (185)
T COG4627 124 NGFMDAGFVV 133 (185)
T ss_pred HHHHhhhhee
Confidence 7777777765
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.33 E-value=0.019 Score=51.07 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=68.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..++.++++.|... +++..+|.--|.|..+..++++. .+++|+|-++.+++.|++++...+. ++ .
T Consensus 9 pVLl~E~i~~L~~~---~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~--r~-------~ 76 (314)
T COG0275 9 PVLLNEVVELLAPK---PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG--RV-------T 76 (314)
T ss_pred chHHHHHHHhcccC---CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC--cE-------E
Confidence 34678888888876 67899999999999999999883 5799999999999999999876542 22 7
Q ss_pred eEEcccccC--------CCCccEEEEcccc
Q 020710 208 FEVKDLESL--------DGKYDTVVCLDVL 229 (322)
Q Consensus 208 ~~~~d~~~~--------~~~fD~V~~~~~l 229 (322)
++..++.++ .+++|-|+.--.+
T Consensus 77 ~v~~~F~~l~~~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 77 LVHGNFANLAEALKELGIGKVDGILLDLGV 106 (314)
T ss_pred EEeCcHHHHHHHHHhcCCCceeEEEEeccC
Confidence 777776554 3578888765443
No 267
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.30 E-value=0.07 Score=48.53 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=74.5
Q ss_pred eEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVV 224 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~ 224 (322)
+++|+-||.|.+...|.+.|.+ +.++|+++.+++.-+.++. ....+|+.+. ++.+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~---------------~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP---------------EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT---------------EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc---------------ccccccccccccccccccceEEE
Confidence 6999999999999999999976 8899999999988888775 2456666655 22699999
Q ss_pred EcccccccC---------cch---HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 225 CLDVLIHYP---------QSK---ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 225 ~~~~l~~~~---------~~~---~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
...-.+.+. ++. ...+++-+..+ ++..++.-+-..+.. .... ...+.+.+
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~-~Pk~~~~ENV~~l~~---------------~~~~--~~~~~i~~ 128 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL-KPKYFLLENVPGLLS---------------SKNG--EVFKEILE 128 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH-S-SEEEEEEEGGGGT---------------GGGH--HHHHHHHH
T ss_pred eccCCceEeccccccccccccchhhHHHHHHHhhc-cceEEEecccceeec---------------cccc--cccccccc
Confidence 865443333 111 23344444433 455544432111110 0000 12467888
Q ss_pred HHHHCCCEEEEEee
Q 020710 293 ALQKVGWKIRKRGL 306 (322)
Q Consensus 293 ~l~~aGf~vv~~~~ 306 (322)
.|.+.||.+....+
T Consensus 129 ~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 129 ELEELGYNVQWRVL 142 (335)
T ss_dssp HHHHTTEEEEEEEE
T ss_pred cccccceeehhccc
Confidence 99999998765433
No 268
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.30 E-value=0.011 Score=50.80 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHH
Q 020710 129 GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARK 188 (322)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~ 188 (322)
....++++++..... ++..|||.-||+|..+....+.|.+.+|+|++++.++.|++
T Consensus 176 kP~~l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 345666777766654 58999999999999999999999999999999999998864
No 269
>PRK13699 putative methylase; Provisional
Probab=96.20 E-value=0.019 Score=49.80 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
.+++.++.... .++..|||.-||+|..+....+.|.+++|+|++++..+.+.+++.+.
T Consensus 151 ~l~~~~i~~~s----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 44445544433 35889999999999999998888999999999999999999998654
No 270
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.17 E-value=0.046 Score=49.87 Aligned_cols=124 Identities=14% Similarity=0.179 Sum_probs=74.6
Q ss_pred EEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEEEc
Q 020710 152 VCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCL 226 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~ 226 (322)
|+|+-||.|.+...|.+.|.+ +.++|+++.+++..+.++.. .+..+|+.++ -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~--------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN--------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC--------------CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999999888988 56799999999888877643 2334565554 2358998876
Q ss_pred ccccccCc--------chHHHHHHHHHhc---cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 227 DVLIHYPQ--------SKADGMIAHLASL---AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 227 ~~l~~~~~--------~~~~~~l~~l~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
.-...++. +....++.+..++ .++..++.-+-..+. .. . .. .....+.+.|+
T Consensus 67 ~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~----~~---------~--~~--~~~~~i~~~l~ 129 (315)
T TIGR00675 67 FPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLV----SH---------D--KG--RTFKVIIETLE 129 (315)
T ss_pred CCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHH----hc---------c--cc--hHHHHHHHHHH
Confidence 54444331 1122333333332 355555443322211 00 0 00 12357778888
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
+.||.+....+
T Consensus 130 ~~GY~v~~~~l 140 (315)
T TIGR00675 130 ELGYKVYYKVL 140 (315)
T ss_pred hCCCEEEEEEE
Confidence 89998865443
No 271
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.73 Score=40.02 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----C-
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----D- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~- 217 (322)
+.+.+|+|+|+-.=++.|... + .+++.+|+|...++..-+.+......-. +.-+++|.+.. +
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-------v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-------VNALCGDYELALAELPR 151 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-------EeehhhhHHHHHhcccC
Confidence 678999999998877777654 3 4799999999988654443332211110 14566675442 2
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
+.==.++...+|-.+.+.+...++..++..+.+|=++
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~ 189 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYF 189 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceE
Confidence 2222344556788888888889999999887665444
No 272
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.73 E-value=0.015 Score=43.58 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCCEEEEEeC
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDI 178 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~ 178 (322)
..++.+..... ..+.....|+|||+|.+.--|...|..=.|+|.
T Consensus 44 AyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 44 AYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 34445544432 234668999999999999999999999999996
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.73 E-value=0.05 Score=45.60 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL 194 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~ 194 (322)
...+.|||||.|.++..|+.. ..-+.|.+|--..-+..++++....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 467999999999999999988 3458999998888888887776543
No 274
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=95.72 E-value=0.31 Score=45.57 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=68.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccc----hHHHHhc--C---CEEEEEeC----CHHHHHHHHHHhHHhhhccCCCC
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSL----AIPLAKQ--G---AIVSASDI----SAAMVAEARKKAEEELLADNGGE 201 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~----~~~la~~--~---~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~ 201 (322)
..+++.+... +..+|+|+|.|.|.- ...|+.+ | .++|||+. +..-++...+++.+..-.-.+
T Consensus 100 qaIleA~~g~---~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-- 174 (374)
T PF03514_consen 100 QAILEAFEGE---RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-- 174 (374)
T ss_pred HHHHHHhccC---cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc--
Confidence 4555666544 577999999999974 4444444 2 47999999 788888888776554322111
Q ss_pred CCCCCceEEc---ccccC--------CCCccEEEEcccccccCcc------hHHHHHHHHHhccCCeEEE
Q 020710 202 APVMPKFEVK---DLESL--------DGKYDTVVCLDVLIHYPQS------KADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 202 ~~~~~~~~~~---d~~~~--------~~~fD~V~~~~~l~~~~~~------~~~~~l~~l~~~~~~~~il 254 (322)
.+ +|... +++++ ++..=+|-|...|||+.++ ....+|+.++++.+..+++
T Consensus 175 ~f---ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~ 241 (374)
T PF03514_consen 175 PF---EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL 241 (374)
T ss_pred cE---EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE
Confidence 11 44332 33333 3444445566778998732 2456888888765544444
No 275
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.68 E-value=0.22 Score=44.98 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=92.3
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C---
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D--- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~--- 217 (322)
-..|+-+|||--.-...+-.. +.+|+-+|. |+.++.=++.+.+.+..- +....++..|+.+. .
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~-----~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATP-----PAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCC-----CceEEEEeccccccchHHHHHhcCC
Confidence 467999999976655444333 567888886 777777777777665321 11127888888742 2
Q ss_pred --CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC---ChhhHHHH-HHhhccCCCCCC--ccccc-cCCHH
Q 020710 218 --GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP---KTFYYDLL-KRVGELFPGPSK--ATRAY-LHAEA 288 (322)
Q Consensus 218 --~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~---~~~~~~~~-~~~~~~~~~~~~--~~~~~-~~~~~ 288 (322)
..-=++++-.++.+++.++..+++..|....++|-.+.+.. .......- ............ ....| ..++.
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 23346788889999999989999999999876665444432 21111110 011111111000 10111 23589
Q ss_pred HHHHHHHHCCCEEEEE
Q 020710 289 DVERALQKVGWKIRKR 304 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~ 304 (322)
+++.++.+.||..+..
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999998765
No 276
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.67 E-value=0.26 Score=45.02 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=91.8
Q ss_pred CCeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCC----CCCCCceEEcccccCCCCcc
Q 020710 149 GIAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD-NGGE----APVMPKFEVKDLESLDGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~----~~~~~~~~~~d~~~~~~~fD 221 (322)
-.+|-=||+|+ ..++..++..|.+|+..|++++.++.++++........ +.+. ...++.+ ..|+++.-...|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF-VATIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee-cCCHHHHhcCCC
Confidence 35788999994 34455667779999999999998887766443211000 0000 0000111 123322235578
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHH-HHHHhh---ccCC-CCCCcccc---------ccC
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYD-LLKRVG---ELFP-GPSKATRA---------YLH 285 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~---------~~~ 285 (322)
+|+ +.++... ...+++++-+..+++.||..+....... +..... +++. ++.+..+. ..-
T Consensus 86 lVi-----EavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 86 FIQ-----ESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred EEE-----ECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 888 4555322 3578888888888888877655544322 222111 0100 00011000 001
Q ss_pred ---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 286 ---AEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 286 ---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
..+.+.+++++.|.+.+.+......|..++++.++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~ 198 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEAL 198 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHH
Confidence 33455678889999988876666788888877653
No 277
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.66 E-value=0.36 Score=43.35 Aligned_cols=164 Identities=17% Similarity=0.086 Sum_probs=88.1
Q ss_pred CeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC------CCCCCceEEcccccCC
Q 020710 150 IAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE------APVMPKFEVKDLESLD 217 (322)
Q Consensus 150 ~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~------~~~~~~~~~~d~~~~~ 217 (322)
.+|.=||+|.-. ++..++..|.+|+.+|.+++.++.++++..+... ...... ...++. ...|+.+.-
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHHh
Confidence 468888998433 4455566689999999999999888766432110 000000 000001 233443333
Q ss_pred CCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHh-------hccC-CCCCCc-----cc
Q 020710 218 GKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRV-------GELF-PGPSKA-----TR 281 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~-------~~~~-~~~~~~-----~~ 281 (322)
..-|+|+.+ ++.+ ....+++++....+++.++..+..+... ...... +-.+ ...... ..
T Consensus 83 ~~aDlViea-----vpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~ 157 (287)
T PRK08293 83 KDADLVIEA-----VPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMG 157 (287)
T ss_pred cCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeC
Confidence 456888853 3332 2457788887766666666544443322 222211 1011 111000 00
Q ss_pred ccc---CCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 282 AYL---HAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 282 ~~~---~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
... ...+.+.++++..|.+.+.+......|..++++..
T Consensus 158 ~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~ 198 (287)
T PRK08293 158 HPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVP 198 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHH
Confidence 000 13445667889999998887767788888887654
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.60 E-value=0.053 Score=49.53 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc---c-ccCCC
Q 020710 145 GSLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD---L-ESLDG 218 (322)
Q Consensus 145 ~~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d---~-~~~~~ 218 (322)
...++.+|+=+|+| .|.++..+++. |++|+++|.|++-.+.|++.-.. .++... . +...+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd--------------~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD--------------HVINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc--------------EEEEcCCchhhHHhHh
Confidence 34578899998887 55677888884 99999999999999988877544 333322 1 22244
Q ss_pred CccEEEEcccccccCcchHHHHHHHHH
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
.||+|+..-. . ..+...++.|+
T Consensus 229 ~~d~ii~tv~-~----~~~~~~l~~l~ 250 (339)
T COG1064 229 IADAIIDTVG-P----ATLEPSLKALR 250 (339)
T ss_pred hCcEEEECCC-h----hhHHHHHHHHh
Confidence 5999997654 2 12456666655
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.57 E-value=0.06 Score=46.96 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=55.1
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC------CCC-
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL------DGK- 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~------~~~- 219 (322)
..+|||+|+|+|.-+...+.. +++|.-.|+... +...+.+....... ++.+- .+.....+.... ...
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~---~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGG---SVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCC---ceeEEEEecCCcccHhhccCCc
Confidence 567999999999877777775 788988887543 33333332221111 10000 002222222221 344
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
||+|+.+.++.+....+ .++..++.++
T Consensus 163 ~DlilasDvvy~~~~~e--~Lv~tla~ll 189 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFE--GLVKTLAFLL 189 (248)
T ss_pred ccEEEEeeeeecCCcch--hHHHHHHHHH
Confidence 99999999987766533 6777777664
No 280
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.46 E-value=0.038 Score=48.68 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=34.9
Q ss_pred CCeEEEECCCcccchHHHHhc----------CCEEEEEeCCHHHHHHHHHHhHH
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ----------GAIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
+.+|+|+|.|+|.++..+++. ..+++-||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 479999999999999888763 35899999999998888877765
No 281
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.46 E-value=0.053 Score=42.99 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=49.2
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CC-CccEEEEcccccccCc--------ch-H
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DG-KYDTVVCLDVLIHYPQ--------SK-A 237 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~-~fD~V~~~~~l~~~~~--------~~-~ 237 (322)
+|+|.||-+++++..++++.+.+..+++ .++..+=+.+ +. ++|+++.+.. ++|. ++ -
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v-------~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TT 71 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRV-------TLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETT 71 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGE-------EEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcE-------EEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHH
Confidence 5899999999999999999998877655 7777765544 34 8999988754 5552 11 2
Q ss_pred HHHHHHHHhccCCeEEEEE
Q 020710 238 DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 238 ~~~l~~l~~~~~~~~il~~ 256 (322)
...++.+.+++.+||++++
T Consensus 72 l~Al~~al~lL~~gG~i~i 90 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITI 90 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhccCCEEEE
Confidence 3455555556666665554
No 282
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.44 E-value=0.12 Score=39.14 Aligned_cols=82 Identities=27% Similarity=0.284 Sum_probs=55.9
Q ss_pred CCeEEEECCCccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 149 GIAVCDAGCGTGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
.++|.|||-|-=. .+..|+++|+.|+++||.+. +.. .++ +|+..|+.++ -...|+|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~g~-----------~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-EGL-----------RFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-ccc-----------eEEEccCCCccHHHhhCccce
Confidence 5699999988543 35667788999999999876 222 222 8999999887 2567899
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
++. =|.+++...+-.+.+..+-..++
T Consensus 75 YSi-----RpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 75 YSI-----RPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred eec-----CCCHHHHHHHHHHHHhhCCCEEE
Confidence 863 24455666555555544545544
No 283
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.095 Score=47.57 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc----cC--C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE----SL--D 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~--~ 217 (322)
-.+.+|||||.|.|.-+..+... --+++.++.|+..-+............ ...+...|+. ++ .
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~--------~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE--------KTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc--------cCCCCCCccchhccCCCcc
Confidence 45678999999999876655443 224777888886555544333322211 1133333432 22 3
Q ss_pred CCccEEEEcccccccCc-chHHHHHHHHHhcc-CCeEEEEECCCh
Q 020710 218 GKYDTVVCLDVLIHYPQ-SKADGMIAHLASLA-EKRLILSFAPKT 260 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~-~~~~~~l~~l~~~~-~~~~il~~~~~~ 260 (322)
..|++|+..+-|-+... .++...++++..++ +||.++++.+++
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 45666666554444443 22455788888765 455677777655
No 284
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.071 Score=48.73 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=45.7
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----------CCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----------GAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
...+++.+...+.+.+..++|+|.|+|.++..+++. .+++..|++|++..+.=+++++..
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 345666666665455678999999999999887653 568999999999887766666544
No 285
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.31 E-value=0.012 Score=51.94 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMV 183 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l 183 (322)
-.+++|||+|||.|...+.....| ..+...|+|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 357899999999999999988887 6799999988777
No 286
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.099 Score=47.97 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=56.5
Q ss_pred CCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CC-Ccc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DG-KYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~-~fD 221 (322)
..+++|+-||.|.+...+...|.+ +.++|+++..++.-+.++... .+...|+... .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~-------------~~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHG-------------DIILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCC-------------ceeechHhhcChhhccccCCC
Confidence 568999999999999999888987 789999999999888877631 5566666544 23 789
Q ss_pred EEEEcccccccC
Q 020710 222 TVVCLDVLIHYP 233 (322)
Q Consensus 222 ~V~~~~~l~~~~ 233 (322)
+++...-.+.+.
T Consensus 70 vligGpPCQ~FS 81 (328)
T COG0270 70 VLIGGPPCQDFS 81 (328)
T ss_pred EEEeCCCCcchh
Confidence 999876665554
No 287
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.18 E-value=0.29 Score=40.86 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=62.8
Q ss_pred HHHHHHhhhcCCCCC-CeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhc--cCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEGSLKG-IAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLA--DNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~-~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~ 209 (322)
+.+.+.+... ++ ..|+.+|||--.....+... +.+++-+|. |++++.-++.+.+.+.. .. ..++
T Consensus 67 ~~v~~~i~~~---~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~-------~~~v 135 (183)
T PF04072_consen 67 DAVREFIAKH---PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPAN-------YRYV 135 (183)
T ss_dssp HHHHHHHHHH---TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEE-------SSEE
T ss_pred HHHHHhhccC---CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcc-------eeEE
Confidence 3445555443 23 38999999998888888774 556777876 66777777776665332 11 1688
Q ss_pred EcccccC------------CCCccEEEEcccccccCcchHHHHHHHH
Q 020710 210 VKDLESL------------DGKYDTVVCLDVLIHYPQSKADGMIAHL 244 (322)
Q Consensus 210 ~~d~~~~------------~~~fD~V~~~~~l~~~~~~~~~~~l~~l 244 (322)
..|+.+. .+..-++++-.++.+++.+....+++.+
T Consensus 136 ~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 136 PADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp ES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 8888753 2344467777789999988888888776
No 288
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.16 E-value=0.018 Score=51.94 Aligned_cols=74 Identities=27% Similarity=0.284 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHH-------HHHHhHHhhhccCCCCCCCCCceEEcccccC---
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAE-------ARKKAEEELLADNGGEAPVMPKFEVKDLESL--- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 216 (322)
.++.-|+|---|||.+....+..|+.|+|.||+-.|+.. .+.++++.+...+. .....+|....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f------ldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF------LDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchh------hheeeecccCcchh
Confidence 578899999999999999999999999999999988872 34555555543311 25667777665
Q ss_pred -CCCccEEEEc
Q 020710 217 -DGKYDTVVCL 226 (322)
Q Consensus 217 -~~~fD~V~~~ 226 (322)
.-.||+|+|-
T Consensus 281 sn~~fDaIvcD 291 (421)
T KOG2671|consen 281 SNLKFDAIVCD 291 (421)
T ss_pred hcceeeEEEeC
Confidence 5689999983
No 289
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.08 E-value=0.047 Score=50.83 Aligned_cols=51 Identities=33% Similarity=0.422 Sum_probs=45.2
Q ss_pred CCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNG 199 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 199 (322)
...|||||.|||.++...+..|+ .|++++.=..|++.|++...+++..+++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI 118 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKI 118 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccce
Confidence 45799999999999998888866 5999999999999999999999988754
No 290
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.03 E-value=0.025 Score=47.74 Aligned_cols=109 Identities=21% Similarity=0.124 Sum_probs=60.0
Q ss_pred CCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHH---hhhccCC-----------C---------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEE---ELLADNG-----------G--------- 200 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~-----------~--------- 200 (322)
.+-++.|-.||.|+++-.+.-. =..|+|.|+++++++.|++++.- .|+..|. +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4679999999999998766543 23699999999999999876521 0000000 0
Q ss_pred ---------C--CCCCCceEEcccccC--------CCCccEEEEcccccccC-------cchHHHHHHHHHhccCCeEEE
Q 020710 201 ---------E--APVMPKFEVKDLESL--------DGKYDTVVCLDVLIHYP-------QSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 201 ---------~--~~~~~~~~~~d~~~~--------~~~fD~V~~~~~l~~~~-------~~~~~~~l~~l~~~~~~~~il 254 (322)
. ........+.|+.+. ....|+|+.---.-++. .....+||..++.+++...|+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 0 011124566677663 34469988743333322 123678999999988776666
Q ss_pred EE
Q 020710 255 SF 256 (322)
Q Consensus 255 ~~ 256 (322)
.+
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 291
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.01 E-value=0.22 Score=38.60 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=46.9
Q ss_pred CCCeEEEECCCcccc-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC----CCccE
Q 020710 148 KGIAVCDAGCGTGSL-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD----GKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~fD~ 222 (322)
...+|.|||-|.=.. +..|.+.|+.|+++|+.+. ... .++ .|+..|+.+++ ...|+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~g~-----------~~v~DDif~P~l~iY~~a~l 73 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-EGV-----------NFVVDDIFNPNLEIYEGADL 73 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------ST-----------TEE---SSS--HHHHTTEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-cCc-----------ceeeecccCCCHHHhcCCcE
Confidence 356999999986543 5556667999999999987 112 222 89999998873 56899
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++.. |.+++...+-++++..+-.+++.
T Consensus 74 IYSiR-----PP~El~~~il~lA~~v~adlii~ 101 (127)
T PF03686_consen 74 IYSIR-----PPPELQPPILELAKKVGADLIIR 101 (127)
T ss_dssp EEEES-------TTSHHHHHHHHHHHT-EEEEE
T ss_pred EEEeC-----CChHHhHHHHHHHHHhCCCEEEE
Confidence 98642 34446666666666556666553
No 292
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.92 E-value=0.17 Score=42.82 Aligned_cols=100 Identities=18% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCCeEEEECCCcccchHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
++..|+|+|.-.|..+..++.. .++|+|||++...... +....+....+ ++|+++|..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~r-------I~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPR-------ITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TT-------EEEEES-SSSTHHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCc-------eEEEECCCCCHHHHHH
Confidence 5789999999999998887753 4689999996433221 11222222233 39999997664
Q ss_pred ----CCCcc-EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 217 ----DGKYD-TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 217 ----~~~fD-~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
....+ ++++.++=|.... +.+.|+....++.+|.++++..
T Consensus 103 v~~~~~~~~~vlVilDs~H~~~h--vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSSHTHEH--VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SGSS----SSEEEEESS----SS--HHHHHHHHHHT--TT-EEEETS
T ss_pred HHHhhccCCceEEEECCCccHHH--HHHHHHHhCccCCCCCEEEEEe
Confidence 11223 2344444333333 5566777777777777776643
No 293
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.88 E-value=0.42 Score=39.95 Aligned_cols=145 Identities=17% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CC--EEEEEeCCHHHH----H--HHHHHhHHhhhccCCCCCCCCCceEEccccc-
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GA--IVSASDISAAMV----A--EARKKAEEELLADNGGEAPVMPKFEVKDLES- 215 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~--~v~gvD~s~~~l----~--~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 215 (322)
..++.+|+|+--|.|++++-++.. |. .|++.-..+... . ..+....+....| .+.+-.+...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN--------~e~~~~~~~A~ 117 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN--------VEVIGKPLVAL 117 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh--------hhhhCCccccc
Confidence 457899999999999999999876 32 566654332210 0 0011111111111 1222222211
Q ss_pred -CCCCccEEEEccccccc-----CcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 216 -LDGKYDTVVCLDVLIHY-----PQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 216 -~~~~fD~V~~~~~l~~~-----~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.....|+++.....|.+ ......++.+.+.+.+++||++.+..+.... +.-. .....-+ ..+...
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p------G~~~--~dt~~~~-ri~~a~ 188 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP------GSGL--SDTITLH-RIDPAV 188 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC------CCCh--hhhhhhc-ccChHH
Confidence 13445555543332222 1233568888888888777776654332110 0000 0011111 246788
Q ss_pred HHHHHHHCCCEEEEEeee
Q 020710 290 VERALQKVGWKIRKRGLI 307 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~ 307 (322)
+.+..+.+||+..-...+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 899999999998765444
No 294
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.85 E-value=0.013 Score=44.04 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=45.1
Q ss_pred CccEEEEcccccccC----cchHHHHHHHHHhccCCeEEEEECCChhhHHH-----HHHhhccCCCCCCccccccCCHHH
Q 020710 219 KYDTVVCLDVLIHYP----QSKADGMIAHLASLAEKRLILSFAPKTFYYDL-----LKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~----~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+||+|+|..+.-++. |+.+..+++++.+++.+|+++++.|..|..-- ...+...+ ...-+.+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~-------~~i~lrP~~ 73 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENY-------KSIKLRPDQ 73 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHH-------HH----GGG
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHH-------hceEEChHH
Confidence 499999999876543 67788999999999999999999887653210 00111110 011134567
Q ss_pred HHHHHHH--CCCEEEE
Q 020710 290 VERALQK--VGWKIRK 303 (322)
Q Consensus 290 ~~~~l~~--aGf~vv~ 303 (322)
+++.|.+ .||+.++
T Consensus 74 F~~~L~~~evGF~~~e 89 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVE 89 (110)
T ss_dssp HHHHHTSTTT---EEE
T ss_pred HHHHHHhcccceEEEE
Confidence 8888887 5998776
No 295
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.84 E-value=0.92 Score=37.72 Aligned_cols=104 Identities=25% Similarity=0.231 Sum_probs=58.7
Q ss_pred eEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCC-----CCCCCCceEEcccccCCCC
Q 020710 151 AVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGG-----EAPVMPKFEVKDLESLDGK 219 (322)
Q Consensus 151 ~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~-----~~~~~~~~~~~d~~~~~~~ 219 (322)
+|.=||+|+=. ++..++..|.+|+.+|.+++.++.+++++...-. ..+.. ....+ --...|+++.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALAR-ISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHT-EEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhh-cccccCHHHHh-h
Confidence 35668887533 3444556699999999999999988877654110 00000 00000 12345566555 7
Q ss_pred ccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChh
Q 020710 220 YDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
.|+|+ +-++.+ ...++++++.+..++..+|..+..++
T Consensus 79 adlVi-----Eai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 79 ADLVI-----EAIPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ESEEE-----E-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred hheeh-----hhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 88888 444432 14689999999887777776655443
No 296
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.67 E-value=0.14 Score=47.69 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----D 217 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 217 (322)
++++.+|||..+..|.=+.++|.. -..|++.|.+..-++..+.++...|+.+ ......|..++ .
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n--------tiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN--------TIVSNYDGREFPEKEFP 310 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc--------eEEEccCcccccccccC
Confidence 468899999999999988888766 3469999999999999999999998876 23455565433 4
Q ss_pred CCccEEEE
Q 020710 218 GKYDTVVC 225 (322)
Q Consensus 218 ~~fD~V~~ 225 (322)
++||-|+.
T Consensus 311 ~~fDRVLL 318 (460)
T KOG1122|consen 311 GSFDRVLL 318 (460)
T ss_pred cccceeee
Confidence 58999994
No 297
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.64 E-value=0.058 Score=47.84 Aligned_cols=97 Identities=25% Similarity=0.225 Sum_probs=67.6
Q ss_pred CCCeEEEECCCcccchH-HHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAI-PLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~-~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
.+..|.|+-+|.|+++. .|...|+ .|.++|++|..++..++.+..++..+++ ....+|-... +...|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~-------~i~~gd~R~~~~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC-------RITEGDNRNPKPRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH-------HhhhccccccCccccchhe
Confidence 45789999999999999 5556676 4999999999999999999887776655 5566665443 6788888
Q ss_pred EEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 224 VCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 224 ~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
.. --+|..+ +....+.|+ ..+|.++-+.
T Consensus 267 nL----GLlPSse~~W~~A~k~Lk--~eggsilHIH 296 (351)
T KOG1227|consen 267 NL----GLLPSSEQGWPTAIKALK--PEGGSILHIH 296 (351)
T ss_pred ee----ccccccccchHHHHHHhh--hcCCcEEEEe
Confidence 75 3445322 334444444 2444466543
No 298
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.12 E-value=1.8 Score=38.64 Aligned_cols=162 Identities=19% Similarity=0.138 Sum_probs=86.1
Q ss_pred CeEEEECCC--cccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-------hhccCCCC--CCCCCceEEcccccCCC
Q 020710 150 IAVCDAGCG--TGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-------LLADNGGE--APVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG--~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~--~~~~~~~~~~d~~~~~~ 218 (322)
.+|.=||+| .+.++..++..|.+|+++|++++.++.++++..+. +....... ....+. ...|... -.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHH-hc
Confidence 368888998 45566667777999999999999997766443221 10000000 000001 1233332 35
Q ss_pred CccEEEEcccccccCc-ch-HHHHHHHHHhccCCeEEEEECCChhhHHHH-HHhh---c----cCCCCCC---------c
Q 020710 219 KYDTVVCLDVLIHYPQ-SK-ADGMIAHLASLAEKRLILSFAPKTFYYDLL-KRVG---E----LFPGPSK---------A 279 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~-~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~~-~~~~---~----~~~~~~~---------~ 279 (322)
..|+|+. -.++ .. ...+++++.+..+++.++..+........+ .... + .+..+.. .
T Consensus 82 ~aDlVi~-----av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g 156 (282)
T PRK05808 82 DADLVIE-----AATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRG 156 (282)
T ss_pred cCCeeee-----cccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCC
Confidence 5788884 3332 11 248888888877766666443332222222 2111 0 1110000 0
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
....--..+.+.+++...|..++.+ .....|...+++..
T Consensus 157 ~~t~~e~~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~~ 195 (282)
T PRK05808 157 LATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRILIP 195 (282)
T ss_pred CCCCHHHHHHHHHHHHHcCCeeEEe-cCccChHHHHHHHH
Confidence 0000114556778999999999887 45577777776643
No 299
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.05 E-value=0.28 Score=40.80 Aligned_cols=93 Identities=19% Similarity=0.079 Sum_probs=63.1
Q ss_pred CCCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
++..|+|.|.-.|..+..++.. | .+|+++||+-..++.+.... ..+.|+.++-.++
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-------------p~i~f~egss~dpai~eq 135 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-------------PDILFIEGSSTDPAIAEQ 135 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-------------CCeEEEeCCCCCHHHHHH
Confidence 5789999999999998888765 5 78999999876654443221 1238888886654
Q ss_pred -----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 217 -----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
.+.--+.+|..+-||+.. ..+.++.+..++--|-++.
T Consensus 136 i~~~~~~y~kIfvilDsdHs~~h--vLAel~~~~pllsaG~Y~v 177 (237)
T COG3510 136 IRRLKNEYPKIFVILDSDHSMEH--VLAELKLLAPLLSAGDYLV 177 (237)
T ss_pred HHHHhcCCCcEEEEecCCchHHH--HHHHHHHhhhHhhcCceEE
Confidence 344456667778777655 5566666666654444443
No 300
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.03 E-value=0.27 Score=49.63 Aligned_cols=128 Identities=22% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--------------CCEEEEEeCCH---HHHHHHHHHhHH------h---hhccCC-C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--------------GAIVSASDISA---AMVAEARKKAEE------E---LLADNG-G 200 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--------------~~~v~gvD~s~---~~l~~a~~~~~~------~---~~~~~~-~ 200 (322)
+.-+|||+|-|+|.+.....+. -.+++++|..| +.+..+-+.... . .....+ +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3579999999999987665421 13688999543 444333221110 0 000000 0
Q ss_pred C-------CCCCCceEEcccccC----CCCccEEEEccc-ccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHH
Q 020710 201 E-------APVMPKFEVKDLESL----DGKYDTVVCLDV-LIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLK 267 (322)
Q Consensus 201 ~-------~~~~~~~~~~d~~~~----~~~fD~V~~~~~-l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~ 267 (322)
. .....+...+|+.+. ...||+|+.-.. -.+-|+---..+++.|+++..+++.+. ++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee----------
Confidence 0 001224556676443 466888886432 112222112578888888876666553 32
Q ss_pred HhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 268 RVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
....+++.|.++||++.+
T Consensus 207 ------------------~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 207 ------------------SAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred ------------------hHHHHHHHHHHcCCeeee
Confidence 234677777777777754
No 301
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.02 E-value=0.41 Score=36.34 Aligned_cols=55 Identities=29% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEE
Q 020710 157 CGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVC 225 (322)
Q Consensus 157 cG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~ 225 (322)
||.|.++..+++. +..|+.+|.+++.++.+++.. . .++.+|..+. -...|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~-----------~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----V-----------EVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----S-----------EEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----c-----------ccccccchhhhHHhhcCccccCEEEE
Confidence 5666777777654 558999999999877776443 1 7888998775 367888876
Q ss_pred c
Q 020710 226 L 226 (322)
Q Consensus 226 ~ 226 (322)
.
T Consensus 69 ~ 69 (116)
T PF02254_consen 69 L 69 (116)
T ss_dssp E
T ss_pred c
Confidence 4
No 302
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.82 E-value=1.1 Score=43.20 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=36.8
Q ss_pred CCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHh
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKA 190 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~ 190 (322)
..+++|+-||.|.+...+-..|.+ |.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 568999999999999999888886 678999999888877765
No 303
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.79 E-value=3.2 Score=37.21 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=84.9
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh--hhc-----cCCC-CC----CCCCceEEccccc
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE--LLA-----DNGG-EA----PVMPKFEVKDLES 215 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~-----~~~~-~~----~~~~~~~~~d~~~ 215 (322)
.+|.=||||. +.++..++..|.+|+.+|.+++.++.++++.... +.. .... .+ ..++. ...|...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR-TSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE-eeCCHHH
Confidence 4688899983 3355566677999999999999998776654321 110 0000 00 00001 1122221
Q ss_pred CCCCccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhc-------cCCC-CC--Cc---
Q 020710 216 LDGKYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGE-------LFPG-PS--KA--- 279 (322)
Q Consensus 216 ~~~~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~-------~~~~-~~--~~--- 279 (322)
-...|+|+.+ ++.+. ...+++++.+..+++.++..+...... .+...... .+.. .. ..
T Consensus 83 -~~~aDlViea-----v~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 83 -LSDADFIVEA-----VPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred -hCCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 2446888853 33322 457788888766666555443333222 22221111 1111 00 00
Q ss_pred cccccC---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 280 TRAYLH---AEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 280 ~~~~~~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
..+..- ..+.+..+++..|..++.+. ....|..++++..
T Consensus 157 ~~g~~T~~e~~~~~~~~~~~lgk~~v~v~-d~pgfv~nRl~~~ 198 (291)
T PRK06035 157 VRAALTSEETFNTTVELSKKIGKIPIEVA-DVPGFFTTRFIEG 198 (291)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEeC-CCCCeeHHHHHHH
Confidence 000111 34455678889999999884 5678887777643
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.77 E-value=0.44 Score=46.24 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=35.0
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+|+=+|||. |..+...++. |++|+++|.+++.++.+++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 4688999999995 5566666665 99999999999988888763
No 305
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.69 E-value=0.044 Score=50.89 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=44.9
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA 196 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~ 196 (322)
.++..|+|+-||.|-+...++.++|+|++-|+++++++..+.++....+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc
Confidence 46889999999999999999999999999999999999999887665443
No 306
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.42 E-value=0.29 Score=44.97 Aligned_cols=41 Identities=32% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.-..|+|+|.|.|.+++.+.-. |..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4568999999999999999866 8899999999777776654
No 307
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.27 E-value=2.9 Score=37.85 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=82.2
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCC-CCCCce-EEcccccCCCCccEEE
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEA-PVMPKF-EVKDLESLDGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~-~~~~~~-~~~d~~~~~~~fD~V~ 224 (322)
.+|.=||+|. +.++..++..|.+|+.+|.+++.++.+++..... +........ ...... ...|..+.-...|+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5688899984 3345566667899999999999988887653221 110000000 000001 1223333234579988
Q ss_pred EcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhc-------cCCCCCCcc------ccc---cC
Q 020710 225 CLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGE-------LFPGPSKAT------RAY---LH 285 (322)
Q Consensus 225 ~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~-------~~~~~~~~~------~~~---~~ 285 (322)
. -++++ ....++..+....+++.++......... .+...... .+..+.... ... --
T Consensus 85 ~-----av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~ 159 (311)
T PRK06130 85 E-----AVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQ 159 (311)
T ss_pred E-----eccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHH
Confidence 5 34432 1456788887766666555443322221 22122111 111110000 000 01
Q ss_pred CHHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 286 AEADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
..+.+.++++..|..++........|..+++
T Consensus 160 ~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~ 190 (311)
T PRK06130 160 TVATTMALLRSIGKRPVLVKKDIPGFIANRI 190 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCCcHHHHH
Confidence 3456788999999988777544455555554
No 308
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.24 E-value=2.8 Score=37.61 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=85.4
Q ss_pred eEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh---hhcc-CCCC-----CCCCCceEEcccccCCCC
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE---LLAD-NGGE-----APVMPKFEVKDLESLDGK 219 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~-~~~~-----~~~~~~~~~~d~~~~~~~ 219 (322)
+|.=||+|. +.++..+++.|.+|+.+|.+++.++.+.++.... +... .+.. ....+. ...|+.+.-..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~ 81 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAAVAD 81 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHhhcC
Confidence 577888873 3345566677999999999999999887654321 1100 0000 000001 12333333345
Q ss_pred ccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhc--------cCCCCCCcccc-------
Q 020710 220 YDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGE--------LFPGPSKATRA------- 282 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------- 282 (322)
.|+|+.+ ++++. ...+++++.+..+++.++..+..+.....+..... .+..+.....-
T Consensus 82 aD~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~ 156 (288)
T PRK09260 82 ADLVIEA-----VPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGL 156 (288)
T ss_pred CCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCC
Confidence 7888853 33322 34667777776677766654444433322221111 11111000000
Q ss_pred --ccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 283 --YLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 283 --~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
.--..+.+..+++..|-+++.+. ....|..++++..
T Consensus 157 ~t~~~~~~~~~~~l~~lg~~~v~v~-d~~Gf~~nRl~~~ 194 (288)
T PRK09260 157 ETSDETVQVAKEVAEQMGKETVVVN-EFPGFVTSRISAL 194 (288)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEec-CcccHHHHHHHHH
Confidence 00134556778889999988874 4477777777654
No 309
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.20 E-value=1.3 Score=45.09 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=91.9
Q ss_pred CeEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-C----CCCCceEEcccccCCC
Q 020710 150 IAVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-A----PVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-~----~~~~~~~~~d~~~~~~ 218 (322)
.+|.=||+|+= ..+..++..|.+|+-+|++++.++.+.++....-. ..++.. . ..++.+ ..|+.. -.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-~~ 391 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG-FE 391 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-hc
Confidence 57999999973 34455667799999999999999887766543110 000000 0 000111 123322 24
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hhc-------cCCCCCC---------ccc
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VGE-------LFPGPSK---------ATR 281 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~~-------~~~~~~~---------~~~ 281 (322)
.-|+|+=. +.+.+.- ..++++++.+..++..||..+..++....+.. ... .|..+.. ..+
T Consensus 392 ~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~ 468 (715)
T PRK11730 392 RVDVVVEA-VVENPKV--KAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468 (715)
T ss_pred CCCEEEec-ccCcHHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCC
Confidence 57888732 2222222 35899999998888888877665543322221 110 1111000 000
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
..--+.+.+.+++++.|...+.+ .....|..++++..
T Consensus 469 T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~ 505 (715)
T PRK11730 469 TSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFP 505 (715)
T ss_pred CCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHH
Confidence 00013456677888999998887 46688888877643
No 310
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.46 Score=42.27 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
..+++||-||.|.|...+...++. -++.-+|++...++..++.++...... .-+.+....+|...+ .++
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy----~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY----EGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc----CCCceEEEeccHHHHHHHhccCC
Confidence 467899999999999998888872 358899999999999988887643321 123347778886543 689
Q ss_pred ccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|+.-..=--.|... .+.+++.+.+.+++++++..
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 99999633211111111 24556666666777666654
No 311
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.13 E-value=0.26 Score=46.02 Aligned_cols=95 Identities=23% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCceEEcccccC----CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPKFEVKDLESL----DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~----~~~f 220 (322)
+.+|||.=+|+|.=++.++.. + .+|+.-|+|+++++..++++.-+++.. ++ +....|+..+ ...|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~-------~v~~~DAn~ll~~~~~~f 122 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERI-------EVSNMDANVLLYSRQERF 122 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCE-------EEEES-HHHHHCHSTT-E
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceE-------EEehhhHHHHhhhccccC
Confidence 568999999999988888776 3 479999999999999999998877765 33 6777787553 6889
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|=.- -+-.+. .++....+..+.||++.+
T Consensus 123 D~IDlD----PfGSp~--pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 123 DVIDLD----PFGSPA--PFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp EEEEE------SS--H--HHHHHHHHHEEEEEEEEE
T ss_pred CEEEeC----CCCCcc--HhHHHHHHHhhcCCEEEE
Confidence 998532 122222 556655554445555543
No 312
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.61 E-value=0.57 Score=44.27 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=66.8
Q ss_pred HHHHHHHhhh-cCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC-Cc
Q 020710 134 VENTMQMLND-EGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM-PK 207 (322)
Q Consensus 134 ~~~~~~~l~~-~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~ 207 (322)
+..+...+.. ...-.+..++|+|.|.|.-.-.+... ...++.||.|..|............-.+. .++. ..
T Consensus 185 v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~---~~v~~~~ 261 (491)
T KOG2539|consen 185 VTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGE---PIVRKLV 261 (491)
T ss_pred HHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCc---hhccccc
Confidence 3444444444 22235678999999977755444333 23589999999999988877765111110 1110 12
Q ss_pred eEEcccccC-CCCccEEEEcccccccCcchH-HHHHHHHHh-ccCCeE
Q 020710 208 FEVKDLESL-DGKYDTVVCLDVLIHYPQSKA-DGMIAHLAS-LAEKRL 252 (322)
Q Consensus 208 ~~~~d~~~~-~~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~-~~~~~~ 252 (322)
|...-+... ...||+|+|...++++..... ....+.+.+ ....|+
T Consensus 262 ~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~ 309 (491)
T KOG2539|consen 262 FHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGY 309 (491)
T ss_pred hhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCc
Confidence 222222222 466999999999999986553 234444444 344333
No 313
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=1.7 Score=39.10 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC--C--EEEEEeCCHHHHHHHHHHhHHhh------h--ccCC---C--CCCCCCceEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--A--IVSASDISAAMVAEARKKAEEEL------L--ADNG---G--EAPVMPKFEV 210 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~--~v~gvD~s~~~l~~a~~~~~~~~------~--~~~~---~--~~~~~~~~~~ 210 (322)
....|+.+|||.-.+...|...+ . .++=||.++........+..... . .+.+ + .+-.+-...-
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 46789999999999998888775 2 35556666554444411111100 0 0000 0 0000112223
Q ss_pred cccccC------------CCC-ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCC--
Q 020710 211 KDLESL------------DGK-YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPG-- 275 (322)
Q Consensus 211 ~d~~~~------------~~~-fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-- 275 (322)
.|+-++ +-. .-++++-.+|.++++++-..+++.+.+-.+...++.+.+-.....+.+-+...+..
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~ 246 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG 246 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence 333322 111 22333345788998877778888888866666666665422222222222222211
Q ss_pred -CCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 276 -PSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 276 -~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
+-.+... +.+.|..++-+.++||+-+...
T Consensus 247 ~~L~gle~-y~s~Esq~~Rf~~~Gw~~v~a~ 276 (335)
T KOG2918|consen 247 CPLHGLET-YNSIESQRSRFLKAGWEYVIAV 276 (335)
T ss_pred CCCchhhh-cccHHHHHHHHHhcCCceeehh
Confidence 1111122 3478888899999999977743
No 314
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.78 E-value=0.23 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCC
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDIS 179 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s 179 (322)
..++.+|||+||..|.++....++ ...|.|||+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 356889999999999999988777 3459999973
No 315
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.59 E-value=3.8 Score=39.18 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+..+...+... .....+|+=+||| .++..++ +.|..|+.+|.+++.++..++.... ..+
T Consensus 216 ~l~~~~~~~~~~-~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~-------------~~~ 279 (453)
T PRK09496 216 HIRAVMSEFGRL-EKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN-------------TLV 279 (453)
T ss_pred HHHHHHHHhCcc-CCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC-------------CeE
Confidence 345555555433 2346789998885 4444444 3488999999999988877654311 167
Q ss_pred EEcccccC-------CCCccEEEEc
Q 020710 209 EVKDLESL-------DGKYDTVVCL 226 (322)
Q Consensus 209 ~~~d~~~~-------~~~fD~V~~~ 226 (322)
+.+|..+. -..+|.|++.
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEEC
Confidence 78887654 3578888764
No 316
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.39 E-value=2.5 Score=38.74 Aligned_cols=43 Identities=33% Similarity=0.493 Sum_probs=32.2
Q ss_pred CCCCeEEEECCC-cccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCG-TGSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG-~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+||=.||| .|..+..+++. |+ +|+++|.+++.++.+++.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 357889989886 45555666665 77 699999999988887653
No 317
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.25 E-value=0.88 Score=41.84 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=60.0
Q ss_pred CCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
..+|||.=||+|.=++.++.. +. +|+.-|+||++++.++++...+...+ ...+..|+..+ ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~--------~~v~n~DAN~lm~~~~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED--------AEVINKDANALLHELHRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc--------ceeecchHHHHHHhcCCCccE
Confidence 678999999999988888776 55 79999999999999999998763222 14444676544 478998
Q ss_pred EEEcccccccCcchHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
|=.-- + --|-|-++..++.++
T Consensus 125 IDiDP-F-GSPaPFlDaA~~s~~ 145 (380)
T COG1867 125 IDIDP-F-GSPAPFLDAALRSVR 145 (380)
T ss_pred EecCC-C-CCCchHHHHHHHHhh
Confidence 84321 1 112233455555544
No 318
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=0.44 Score=45.71 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCeEEEECCCcccchHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GK 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~ 219 (322)
...|+-+|.|-|-+.....+. ..++++|+-+|.++-..+. ..-..+.+++ +.+..|+.+. + .+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~V-------tii~~DMR~w~ap~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRV-------TIISSDMRKWNAPREQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCee-------EEEeccccccCCchhh
Confidence 456889999999987665443 4579999999999988766 3444566655 8899998876 2 67
Q ss_pred ccEEEEcccccccCcchH-HHHHHHHHhccCCeEEE
Q 020710 220 YDTVVCLDVLIHYPQSKA-DGMIAHLASLAEKRLIL 254 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~~~~~il 254 (322)
.|+++ ++.|..+.|.++ .++|.-+.+.+++.+|.
T Consensus 440 ~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 440 ADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred ccchH-HHhhccccCccCCHHHHHHHHhhcCCCceE
Confidence 88776 455666766665 67888888877766655
No 319
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.11 E-value=0.78 Score=43.87 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCC----HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc----cCCCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDIS----AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE----SLDGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~f 220 (322)
-..|+|...|.|.|+..|.+.. |+.+-.- +.-+... -+.|+.. .-.|.. ..+.+|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vI----ydRGLIG-----------~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVI----YDRGLIG-----------VYHDWCEAFSTYPRTY 428 (506)
T ss_pred eeeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhh----hhcccch-----------hccchhhccCCCCcch
Confidence 4579999999999999998775 3332222 2222221 1222221 112322 238899
Q ss_pred cEEEEcccccccCcc-hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC
Q 020710 221 DTVVCLDVLIHYPQS-KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299 (322)
Q Consensus 221 D~V~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 299 (322)
|+|-...++.++.+. .+..++-++-|++.++|.+++-...- -.+++++++.+-.|
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------vl~~v~~i~~~lrW 484 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------VLEKVKKIAKSLRW 484 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------HHHHHHHHHHhCcc
Confidence 999999998887642 25778889999998888777633221 13466667777777
Q ss_pred EEEEEeeee
Q 020710 300 KIRKRGLIT 308 (322)
Q Consensus 300 ~vv~~~~~~ 308 (322)
++...+...
T Consensus 485 ~~~~~d~e~ 493 (506)
T PF03141_consen 485 EVRIHDTED 493 (506)
T ss_pred eEEEEecCC
Confidence 765554443
No 320
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.62 E-value=5 Score=40.97 Aligned_cols=165 Identities=18% Similarity=0.099 Sum_probs=92.9
Q ss_pred CCeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC---C--CCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE---A--PVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~---~--~~~~~~~~~d~~~~~ 217 (322)
-.+|.=||+|+=. .+..++..|.+|+-+|.+++.++.+.++....-. ..++.. . ..++++ ..|+.. -
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-~ 390 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP-TLSYAG-F 390 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-h
Confidence 3579999999543 3445566799999999999999888766543210 000000 0 000011 122222 2
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------hccCCCCCC------ccccc
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------GELFPGPSK------ATRAY 283 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~~~~~~~~~------~~~~~ 283 (322)
...|+|+=. +.+.+.- ..++++++-++.++..|+..+..++....+... +-.|..+.. ...+.
T Consensus 391 ~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~ 467 (714)
T TIGR02437 391 DNVDIVVEA-VVENPKV--KAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGE 467 (714)
T ss_pred cCCCEEEEc-CcccHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCC
Confidence 457888733 2333333 358999999988888888776655443322211 111110000 00000
Q ss_pred ---cCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 284 ---LHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 284 ---~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
-.+.+...+++++.|...+.+. ....|..++++..
T Consensus 468 ~Ts~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NRl~~~ 505 (714)
T TIGR02437 468 KSSDETIATVVAYASKMGKTPIVVN-DCPGFFVNRVLFP 505 (714)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeC-CcccchHHHHHHH
Confidence 0134556678889999988875 6688888887654
No 321
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.58 E-value=3.7 Score=41.89 Aligned_cols=165 Identities=17% Similarity=0.093 Sum_probs=89.8
Q ss_pred CCeEEEECCCc--ccchHHHH-hcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccC
Q 020710 149 GIAVCDAGCGT--GSLAIPLA-KQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESL 216 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la-~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~ 216 (322)
-.+|.=||+|+ ...+..++ ..|..|+..|.+++.++.+.++..+.-. ..++.. ...++.+ ..|+..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~- 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG-TTDYRG- 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE-eCChHH-
Confidence 36799999997 33444455 5599999999999999888766543210 000000 0000111 122222
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hh-------ccC-CCCCC--------c
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VG-------ELF-PGPSK--------A 279 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~-------~~~-~~~~~--------~ 279 (322)
-...|+|+=. +.+.+.- ..++++++.+..++..|+..+..++....+.. .. -.| .+... .
T Consensus 387 ~~~aDlViEa-v~E~~~~--K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g 463 (708)
T PRK11154 387 FKHADVVIEA-VFEDLAL--KQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPH 463 (708)
T ss_pred hccCCEEeec-ccccHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECC
Confidence 2457888732 2233322 35899999988888888876655543332221 11 011 10000 0
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
....--..+.+.+++.+.|...+.+ .....|..++++..
T Consensus 464 ~~Ts~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~ 502 (708)
T PRK11154 464 AKTSAETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAP 502 (708)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHH
Confidence 0000013455667888899988876 34577777777654
No 322
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.56 E-value=8.9 Score=34.73 Aligned_cols=162 Identities=20% Similarity=0.139 Sum_probs=82.0
Q ss_pred CeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-------hhhccCCC--CCCCCCceEEcccccCCC
Q 020710 150 IAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEE-------ELLADNGG--EAPVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~--~~~~~~~~~~~d~~~~~~ 218 (322)
.+|.=||+|. | .++..+++.|.+|++.|.+++.++.++++... .+...... ....++ -...|+.+.-.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i-~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARI-RVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCe-EEECcHHHhhC
Confidence 3688889883 2 34556677799999999999888877654321 11100000 000000 12234333234
Q ss_pred CccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhc---cC-CCCCCccc----------
Q 020710 219 KYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGE---LF-PGPSKATR---------- 281 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~---~~-~~~~~~~~---------- 281 (322)
..|+|+.+ ++++ ....+++.+....++..++..+...... .+...... .+ ..+....+
T Consensus 82 ~ad~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~ 156 (308)
T PRK06129 82 DADYVQES-----APENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPA 156 (308)
T ss_pred CCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCC
Confidence 57888753 3432 2456777777766666666443332221 12222111 11 01111110
Q ss_pred --cccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 282 --AYLHAEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 282 --~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
..--..+.+..+++..|-+++.+......|..++++
T Consensus 157 ~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~ 194 (308)
T PRK06129 157 PWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQ 194 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHH
Confidence 000134456678889999998876555555555543
No 323
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.27 E-value=0.97 Score=43.88 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=56.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+-+.+++... +..+|+|..||+|.+.....+. . ..++|.|+++.....++-+.--++.... +..
T Consensus 176 ~liv~~l~~~---~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~-------~~i 245 (489)
T COG0286 176 ELIVELLDPE---PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGD-------ANI 245 (489)
T ss_pred HHHHHHcCCC---CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcc-------ccc
Confidence 3444444432 4569999999999988776554 1 5689999999999999988876665420 122
Q ss_pred EEccc-cc-------CCCCccEEEEcccc
Q 020710 209 EVKDL-ES-------LDGKYDTVVCLDVL 229 (322)
Q Consensus 209 ~~~d~-~~-------~~~~fD~V~~~~~l 229 (322)
..+|- .. ..+.||.|+++.-+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCC
Confidence 33321 11 13679998886543
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.17 E-value=6.1 Score=33.70 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=65.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCccc--chHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGS--LAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~--~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+++..|... .+-..|+++.|+.|. .+..|+-. |.++++|-..+.-+...++.+.+.+..+.. +|
T Consensus 30 aEfISAlAAG--~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~v-------Ef 100 (218)
T PF07279_consen 30 AEFISALAAG--WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVV-------EF 100 (218)
T ss_pred HHHHHHHhcc--ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccc-------eE
Confidence 5566666543 345689999777543 34444422 889999999988888888888777665433 88
Q ss_pred EEccccc-C---CCCccEEEEcccccccCcchHH-HHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLES-L---DGKYDTVVCLDVLIHYPQSKAD-GMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~-~---~~~fD~V~~~~~l~~~~~~~~~-~~l~~l~~~~~~~~il~~ 256 (322)
+.++..+ . -...|+++.-. ..++.. ++|+.+. +.+.|.++.+
T Consensus 101 vvg~~~e~~~~~~~~iDF~vVDc-----~~~d~~~~vl~~~~-~~~~GaVVV~ 147 (218)
T PF07279_consen 101 VVGEAPEEVMPGLKGIDFVVVDC-----KREDFAARVLRAAK-LSPRGAVVVC 147 (218)
T ss_pred EecCCHHHHHhhccCCCEEEEeC-----CchhHHHHHHHHhc-cCCCceEEEE
Confidence 8888543 2 35688887532 122233 5555433 3344555543
No 325
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.06 E-value=10 Score=34.04 Aligned_cols=162 Identities=14% Similarity=0.081 Sum_probs=80.6
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-------hhhccCCCC-CCCCCceEEcccccCCCC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEE-------ELLADNGGE-APVMPKFEVKDLESLDGK 219 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~-~~~~~~~~~~d~~~~~~~ 219 (322)
.+|.=||+|. ..++..++..|.+|+..|.+++.++.++++..+ .+....... ......-...+.+. -..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE-LRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH-hCC
Confidence 5688899983 334555666799999999999998876654431 110000000 00000011122222 244
Q ss_pred ccEEEEcccccccCc--chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------hccCC-CCCCc--c------
Q 020710 220 YDTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------GELFP-GPSKA--T------ 280 (322)
Q Consensus 220 fD~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~~~~~-~~~~~--~------ 280 (322)
-|+|+. .+++ .....+++++....+++.++..+..+.....+... +-.+. .+... .
T Consensus 84 aD~Vie-----av~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~ 158 (295)
T PLN02545 84 ADFIIE-----AIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGA 158 (295)
T ss_pred CCEEEE-----cCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCC
Confidence 688884 4442 22356788887766666555433333222222111 11111 11000 0
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhh
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~ 318 (322)
...-...+.+..+++..|..++.+. ....|..++++.
T Consensus 159 ~t~~e~~~~~~~ll~~lG~~~~~~~-d~~g~i~nri~~ 195 (295)
T PLN02545 159 DTSDEVFDATKALAERFGKTVVCSQ-DYPGFIVNRILM 195 (295)
T ss_pred CCCHHHHHHHHHHHHHcCCeeEEec-CcccHHHHHHHH
Confidence 0000134567788999999887653 335566666553
No 326
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.94 E-value=3.6 Score=42.11 Aligned_cols=164 Identities=12% Similarity=0.020 Sum_probs=91.2
Q ss_pred CeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc----cCCC---C--CCCCCceEEcccccCCC
Q 020710 150 IAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA----DNGG---E--APVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~~---~--~~~~~~~~~~d~~~~~~ 218 (322)
.+|-=||+|+=. .+..++..|.+|+.+|.+++.++.+.++..+.-.. .++. . ...++.+ ..|+.. -.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-~~ 413 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP-TLDYSG-FK 413 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-hc
Confidence 579999998633 34455667999999999999999887766432110 0000 0 0000111 122222 24
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hh-------ccC-CCCCC-----cccccc
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VG-------ELF-PGPSK-----ATRAYL 284 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~-------~~~-~~~~~-----~~~~~~ 284 (322)
..|+|+=. +.+.+.- ..++++++.+..+++.|+..+..++....+.. .. -.| .+... ...+..
T Consensus 414 ~aDlViEA-v~E~l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~ 490 (737)
T TIGR02441 414 NADMVIEA-VFEDLSL--KHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDG 490 (737)
T ss_pred cCCeehhh-ccccHHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCC
Confidence 56777722 2233322 35899999998888888877665544332221 11 111 11000 000000
Q ss_pred C---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 285 H---AEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 285 ~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
- ..+....++++.|...+.+ .....|..++++..
T Consensus 491 Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~ 527 (737)
T TIGR02441 491 TSKDTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGP 527 (737)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHH
Confidence 1 3444567888889998887 45688888887654
No 327
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.70 E-value=6.7 Score=35.17 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=84.1
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh--ccCCCCCCC-----CCce-EEcccccCCCC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL--ADNGGEAPV-----MPKF-EVKDLESLDGK 219 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~-----~~~~-~~~d~~~~~~~ 219 (322)
.+|-=||+|+ +.++..++..|.+|+..|.+++.++.+++++.+.-. ..+-..... .-.. ...|++. -..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hCC
Confidence 4788899984 344555667799999999999999987766543210 000000000 0001 2333332 245
Q ss_pred ccEEEEcccccccCcc-h-HHHHHHHHHhcc-CCeEEEEECCChhhHHHHHHh--------h-ccCCCCCCc-----ccc
Q 020710 220 YDTVVCLDVLIHYPQS-K-ADGMIAHLASLA-EKRLILSFAPKTFYYDLLKRV--------G-ELFPGPSKA-----TRA 282 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~-~-~~~~l~~l~~~~-~~~~il~~~~~~~~~~~~~~~--------~-~~~~~~~~~-----~~~ 282 (322)
.|+|+- -++++ + ...++..+.+.. +++.++..+........+... + .++.+.... ...
T Consensus 85 ~d~ViE-----av~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~ 159 (286)
T PRK07819 85 RQLVIE-----AVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPT 159 (286)
T ss_pred CCEEEE-----ecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCC
Confidence 688884 44432 2 346788888876 667766554443322222111 0 111100000 000
Q ss_pred ccC---CHHHHHHHHHH-CCCEEEEEeeeecceehhhhhhh
Q 020710 283 YLH---AEADVERALQK-VGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 283 ~~~---~~~~~~~~l~~-aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
..- ..+.+..++.+ .|..++.+ .....|..++++..
T Consensus 160 ~~T~~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~nRi~~~ 199 (286)
T PRK07819 160 LVTSEATVARAEEFASDVLGKQVVRA-QDRSGFVVNALLVP 199 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceEe-cCCCChHHHHHHHH
Confidence 001 33444566674 78888776 44567777776643
No 328
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.28 E-value=1.1 Score=42.79 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
.+..+|-||-|.|.+...+... ..++++|++.|.|++.+++.+.-..-. |. +....|..+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~-------~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RN-------KVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hh-------hhhHhhchHHHHHHhhccc
Confidence 4567899999999998877655 468999999999999999887532221 11 3333332211
Q ss_pred -CCCccEEEE----ccccccc---Ccch-HHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCC
Q 020710 217 -DGKYDTVVC----LDVLIHY---PQSK-ADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFP 274 (322)
Q Consensus 217 -~~~fD~V~~----~~~l~~~---~~~~-~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~ 274 (322)
+..||++.. .. .|-+ |... ...++..++..+++.++++++ ..++.......+...|+
T Consensus 367 ~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~ 436 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFP 436 (482)
T ss_pred cccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhH
Confidence 467888875 12 2222 2222 356788888877776665542 23344445555555543
No 329
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.58 E-value=3.5 Score=37.81 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ++..|+++|++|+.++-+++.++...+.+...+... .++..|+.+.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~---------~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEV---------LVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEeeCCCHHHHHHHHH
Confidence 45788888875544 234455669999999999888776666555433221 5667787653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 77 ~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 2679999987654
No 330
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=88.35 E-value=1.6 Score=40.17 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc------------C------CEEEEEeCCHHHHHHHHHHhHHh----hhccCCCCCCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ------------G------AIVSASDISAAMVAEARKKAEEE----LLADNGGEAPV 204 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~------------~------~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~ 204 (322)
....+|+|+||..|.++..+... + .+|+.-|+-.+=....=+.+... .... .
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~----- 88 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-N----- 88 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-S-----
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-e-----
Confidence 45679999999999999877542 2 47888886443332222212111 0011 0
Q ss_pred CCceEE---ccccc-C--CCCccEEEEcccccccC
Q 020710 205 MPKFEV---KDLES-L--DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 205 ~~~~~~---~d~~~-~--~~~fD~V~~~~~l~~~~ 233 (322)
-|.. +.+-. + +++.|+++++.+|||+.
T Consensus 89 --~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 89 --YFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp --EEEEEEES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred --EEEEecCchhhhccCCCCceEEEEEechhhhcc
Confidence 2333 23322 1 79999999999999876
No 331
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.30 E-value=4.3 Score=35.21 Aligned_cols=73 Identities=23% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. +...|+++|++|+.++-+++.++...+.+...+.. +.++.+|+.+.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGA---------AEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEccCCCHHHHHHHHH
Confidence 46788988865443 23334556999999999987766655554433221 16778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-++.|.|+.+...
T Consensus 81 ~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 2578999987664
No 332
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=88.25 E-value=0.8 Score=35.62 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=45.0
Q ss_pred ceEEcccccC----CCCccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcc
Q 020710 207 KFEVKDLESL----DGKYDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 207 ~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
++..+|+.+. +..||+|+.-.. .--.++++ .++++.|++++++++++..-.
T Consensus 34 ~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------------- 90 (124)
T PF05430_consen 34 TLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYS---------------------- 90 (124)
T ss_dssp EEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------------
T ss_pred EEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEee----------------------
Confidence 6667776543 688999997542 11112332 689999999988887775411
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
....+++.|.++||+|.+..
T Consensus 91 -----~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 -----SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp ------BHHHHHHHHHCTEEEEEEE
T ss_pred -----chHHHHHHHHHcCCEEEEcC
Confidence 12468899999999997654
No 333
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.05 E-value=3.4 Score=37.51 Aligned_cols=45 Identities=38% Similarity=0.406 Sum_probs=35.7
Q ss_pred cCCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 144 EGSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 144 ~~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
.+...+.+||-+|+|. |..+...++. |+ +|+.+|+++..++.|++
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3346789999999995 5555555555 65 69999999999999988
No 334
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.04 E-value=3.3 Score=35.97 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. .+..|+++|++|+.++.+++.++...+.....+.. +.++..|+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGK---------VVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCe---------EEEEEccCCCHHHHHHHHH
Confidence 36789999986654 34455666999999999887776665554433211 16677887654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|.++.+....
T Consensus 79 ~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 26899999876553
No 335
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.96 E-value=1.7 Score=40.72 Aligned_cols=43 Identities=37% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+||.+|||. |..+..+++. |. +++++|.++++++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4678999999988 8888888877 76 599999999999888775
No 336
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.75 E-value=3.5 Score=35.71 Aligned_cols=73 Identities=23% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||-.|++.|. .+..|++.|++|+.++-+++-++...+.....+.. +.++.+|+.+.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGE---------ALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 36788988875544 23345556999999999887766555554433221 27788888654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.++.|+|+.+...
T Consensus 77 ~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2578999987764
No 337
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.71 E-value=2.8 Score=41.92 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred CeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CC
Q 020710 150 IAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
.+|+=+|+| .++..++ +++.+++.+|.+++.++.+++. +. ..+.+|..+. -.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g~-----------~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY----GY-----------KVYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----CC-----------eEEEeeCCCHHHHHhcCCc
Confidence 456665555 4544444 4488999999999998887642 21 7889998775 35
Q ss_pred CccEEEEcccccccCcchHH-HHHHHHHhccCCeEEEE
Q 020710 219 KYDTVVCLDVLIHYPQSKAD-GMIAHLASLAEKRLILS 255 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~-~~l~~l~~~~~~~~il~ 255 (322)
+.|.|++. .++++.. .+...+++..+..-++.
T Consensus 464 ~A~~vv~~-----~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 464 KAEAIVIT-----CNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred cCCEEEEE-----eCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 78888753 3343333 44455555444433443
No 338
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.61 E-value=3.8 Score=36.68 Aligned_cols=75 Identities=25% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
-.+..||==|.|.|. ++..++++|+++...|++.+-...-.+...+.| ++ .....|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~-------~~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EA-------KAYTCDISDREEIYRLA 105 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ce-------eEEEecCCCHHHHHHHH
Confidence 357789988888876 466677889999999999988877777776654 22 7888888764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-|..|+++.+..+.+
T Consensus 106 ~~Vk~e~G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 106 KKVKKEVGDVDILVNNAGIVT 126 (300)
T ss_pred HHHHHhcCCceEEEecccccc
Confidence 478999998765543
No 339
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.34 E-value=2.2 Score=39.62 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=56.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhH-------HhhhccCCCCCCCC
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAE-------EELLADNGGEAPVM 205 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~-------~~~~~~~~~~~~~~ 205 (322)
+.+.+.+.+....+.....|+|.|.|.....++.. ++ .-+|+++....-+.+..+.. ..|. ....
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk------~~~~ 252 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK------KPNK 252 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC------CcCc
Confidence 44555555544567889999999999998888776 34 35677776544443332221 1121 1122
Q ss_pred CceEEcccccC------CCCccEEEEccccc
Q 020710 206 PKFEVKDLESL------DGKYDTVVCLDVLI 230 (322)
Q Consensus 206 ~~~~~~d~~~~------~~~fD~V~~~~~l~ 230 (322)
++.+.+++.+. ....++|+.+++.-
T Consensus 253 ~~~i~gsf~~~~~v~eI~~eatvi~vNN~~F 283 (419)
T KOG3924|consen 253 IETIHGSFLDPKRVTEIQTEATVIFVNNVAF 283 (419)
T ss_pred eeecccccCCHHHHHHHhhcceEEEEecccC
Confidence 36666776554 67789999888763
No 340
>PRK07035 short chain dehydrogenase; Provisional
Probab=87.09 E-value=4 Score=35.35 Aligned_cols=73 Identities=19% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. +...|++.|++|+.++.++..++...+...+.+... .++..|+.+.
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKA---------EALACHIGEMEQIDALFA 77 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeE---------EEEEcCCCCHHHHHHHHH
Confidence 35678888888665 344455669999999998877666555554332221 5677777554
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 78 HIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2578999977653
No 341
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.08 E-value=14 Score=32.36 Aligned_cols=74 Identities=23% Similarity=0.175 Sum_probs=49.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. .+..|++.|++|+.+|.++.-++...+.+.... ..+ +.++..|+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~-------~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVD-------VSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCc-------eEEEEecCCCHHHHHHHHH
Confidence 46778888877654 345566679999999999877666655543321 111 26778887764
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 79 ~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHHhhCCCcEEEECCCC
Confidence 2578998877654
No 342
>PRK06197 short chain dehydrogenase; Provisional
Probab=86.74 E-value=14 Score=33.17 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|+. |..+.. |+++|++|+.++.+++..+.+.+.........+ +.++..|+.+.
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGAD-------VTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCc-------eEEEECCCCCHHHHHHHH
Confidence 46778877764 444444 445699999998887766555444432211111 26788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 87 ~~~~~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGVM 106 (306)
T ss_pred HHHHhhCCCCCEEEECCccc
Confidence 25689999887653
No 343
>PRK07890 short chain dehydrogenase; Provisional
Probab=86.57 E-value=5.3 Score=34.61 Aligned_cols=73 Identities=25% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ++..|+++|++|+.++.++.-.+...+.....+.. +.++..|+.+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRR---------ALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCc---------eEEEecCCCCHHHHHHHHH
Confidence 45778877765443 23445566999999999887666555444332221 26788887653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 75 ~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 75 LALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHcCCccEEEECCcc
Confidence 2578999987754
No 344
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=86.41 E-value=6.7 Score=34.30 Aligned_cols=74 Identities=26% Similarity=0.221 Sum_probs=50.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|-.|++.|. .+..|+++|++|+.++-++..++...+.....+.. +.++..|+.+.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 79 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIE---------AHGYVCDVTDEDGVQAMVS 79 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 46788888887654 34556667999999998887766655555433221 26788888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|.++.+....
T Consensus 80 ~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 80 QIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHhCCCCCEEEECCCCC
Confidence 26789999887654
No 345
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.39 E-value=2.6 Score=37.56 Aligned_cols=85 Identities=21% Similarity=0.178 Sum_probs=52.2
Q ss_pred eEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+|.=||+|. |.++..|.+.|.+|+++|.+++.++.+.+. +.. .....+.+ .-...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~~----------~~~~~~~~-~~~~aDlVila-- 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GLV----------DEASTDLS-LLKDCDLVILA-- 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CCc----------ccccCCHh-HhcCCCEEEEc--
Confidence 467788884 556677777799999999999887766542 111 11111221 12457999864
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
+|.....++++++...++++.++.
T Consensus 65 ---vp~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 65 ---LPIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 444445567777776555555543
No 346
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.23 E-value=1.3 Score=42.21 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=55.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
++.+|||.=|++|.-++.+++. | .+|++-|.++..|+..+++..-++..+.+ +....|+--+ .
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~iv-------e~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIV-------EPHHSDANVLMYEHPMVA 181 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhc-------ccccchHHHHHHhccccc
Confidence 5779999999999999998887 4 36999999999999999998877666544 5556665433 4
Q ss_pred CCccEEE
Q 020710 218 GKYDTVV 224 (322)
Q Consensus 218 ~~fD~V~ 224 (322)
..||+|=
T Consensus 182 ~~FDvID 188 (525)
T KOG1253|consen 182 KFFDVID 188 (525)
T ss_pred cccceEe
Confidence 7899984
No 347
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.08 E-value=5.7 Score=35.97 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=50.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++-+.+-.+.+.+.+.......+ +.++..|+.+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~-------v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAK-------LSLRALDLSSLASVAALGE 85 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCc-------eEEEEecCCCHHHHHHHHH
Confidence 46788888876554 3344556699999999887766655554433211111 27888898774
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+.....
T Consensus 86 ~~~~~~~~iD~li~nAG~~~ 105 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGVMT 105 (313)
T ss_pred HHHHhCCCccEEEECCcccc
Confidence 367899998776543
No 348
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.72 E-value=6 Score=35.05 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=48.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. ++..|+++|++|+.+|.++..++...+.+...+.. +.++..|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~---------~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFD---------VHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEeCCCCCHHHHHHHHH
Confidence 35678888876554 23445556999999999887666554444332221 26778888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 76 ~~~~~~g~id~li~nAg~~ 94 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIV 94 (275)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25689999877653
No 349
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.44 E-value=5.2 Score=34.83 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|-.|++.|. .+..|+++|++|+.+|.+++.++...+.+.......+ +.++..|+.+.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGAR-------VLAVPADVTDAASVAAAVA 78 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCce-------EEEEEccCCCHHHHHHHHH
Confidence 46789988876543 3344556699999999988777666555543111111 26778888664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 79 ~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 79 AAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHhCCCcEEEECCCc
Confidence 2579999987654
No 350
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.39 E-value=17 Score=31.15 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+||=.|+..|. ++..|+++|++|++++-++.-++........ +.. +.++.+|+.+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~---------~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGR---------AIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCe---------EEEEECCCCCHHHHHHHHH
Confidence 35678888775433 2344556699999999998766554444322 111 16788888764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+.+|+|+.+...
T Consensus 74 ~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 74 AALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2468999987765
No 351
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.23 E-value=25 Score=34.20 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=84.5
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-----hhccCCCCCCCCCceEEcccccCCCCccE
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-----LLADNGGEAPVMPKFEVKDLESLDGKYDT 222 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~fD~ 222 (322)
.+|-=||+|+ +.++..++..|.+|+..|.+++.++...+..... .+.........++. ...|+.+.-...|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~-~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT-FCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE-eeCCHHHHhcCCCE
Confidence 4677888883 3456667777999999999998887654321100 00000000000001 12233332345788
Q ss_pred EEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHH-HHHHhhc---cC-CCCCCccc---------cccC-
Q 020710 223 VVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYD-LLKRVGE---LF-PGPSKATR---------AYLH- 285 (322)
Q Consensus 223 V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~---------~~~~- 285 (322)
|+. -+++.. ...+++.+....+++.+|..+....... +...+.. .+ ..+....+ +...
T Consensus 84 Vie-----avpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 84 IQE-----SVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred EEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 884 444432 3456777776666666665544332222 2121111 01 00100000 0001
Q ss_pred --CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 286 --AEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 286 --~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
..+.+..+++..|-+.+........|..++++.++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEAL 195 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHH
Confidence 23445677889999988876666777777776653
No 352
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.96 E-value=12 Score=38.10 Aligned_cols=164 Identities=17% Similarity=0.089 Sum_probs=90.0
Q ss_pred CeEEEECCCcccchH--HHH-hcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-C----CCCCceEEcccccCC
Q 020710 150 IAVCDAGCGTGSLAI--PLA-KQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-A----PVMPKFEVKDLESLD 217 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~--~la-~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-~----~~~~~~~~~d~~~~~ 217 (322)
.+|.=||+|+=...+ .++ ..|.+|+.+|++++.++.+.++..+.-. ..+... . ..++. ...|+.. -
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT-GTTDYRG-F 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE-EeCChHH-h
Confidence 479999998654433 344 3699999999999999888766532110 000000 0 00011 1123322 2
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hhc-------c-CCCCCC--------cc
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VGE-------L-FPGPSK--------AT 280 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~~-------~-~~~~~~--------~~ 280 (322)
...|+|+=. +.+.+.- ..++++++-+..++..||..+..++....+.. ... . |.++.. ..
T Consensus 383 ~~adlViEa-v~E~l~~--K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~ 459 (699)
T TIGR02440 383 KDVDIVIEA-VFEDLAL--KHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHA 459 (699)
T ss_pred ccCCEEEEe-ccccHHH--HHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence 457888732 2222222 35889999888888888877655543322221 110 1 111000 00
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
...-...+.+.+++++.|.+.+.+. ....|..++++..
T Consensus 460 ~T~~~~~~~~~~~~~~~gk~pv~v~-d~pGfi~nRl~~~ 497 (699)
T TIGR02440 460 GTSEQTIATTVALAKKQGKTPIVVA-DKAGFYVNRILAP 497 (699)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEc-cccchHHHHHHHH
Confidence 0000144556678889999988874 5688888887654
No 353
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.78 E-value=4.7 Score=32.76 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=62.2
Q ss_pred eEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 151 AVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 151 ~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+|-=||+|.= .++..|++.|.+|++.|.+++..+...+. + --.+.+..+.-...|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g------------~~~~~s~~e~~~~~dvvi~--- 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G------------AEVADSPAEAAEQADVVIL--- 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T------------EEEESSHHHHHHHBSEEEE---
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h------------hhhhhhhhhHhhcccceEe---
Confidence 4555777632 23444556699999999998766554432 1 1223344444344599985
Q ss_pred ccccCc-chHHHHHHH--HHhcc-CCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 229 LIHYPQ-SKADGMIAH--LASLA-EKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 229 l~~~~~-~~~~~~l~~--l~~~~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
-+++ +....++.. +...+ ++..++.+...... ...++.+.+.+.|...+..
T Consensus 64 --~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~-----------------------~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 64 --CVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPE-----------------------TSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp ---SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH-----------------------HHHHHHHHHHHTTEEEEEE
T ss_pred --ecccchhhhhhhhhhHHhhccccceEEEecCCcchh-----------------------hhhhhhhhhhhccceeeee
Confidence 3444 445666666 55544 55666666432211 2356777777778777665
Q ss_pred eee
Q 020710 305 GLI 307 (322)
Q Consensus 305 ~~~ 307 (322)
...
T Consensus 119 pV~ 121 (163)
T PF03446_consen 119 PVS 121 (163)
T ss_dssp EEE
T ss_pred eee
Confidence 544
No 354
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.75 E-value=7.2 Score=36.96 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.++.+|+=+|||. |.....+++. |++|+.+|.++.-...|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 4688999999995 5544444444 8999999999887666653
No 355
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=84.57 E-value=8.7 Score=33.27 Aligned_cols=73 Identities=23% Similarity=0.214 Sum_probs=46.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|+++|++|+.++.++..++...+.....+.. +.++..|+.+.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIK---------AHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCe---------EEEEecCCCCHHHHHHHHH
Confidence 35678888866543 23445556999999999877665554444332211 15667787654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+.+|.|+.+...
T Consensus 79 ~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 2578999987754
No 356
>PRK06194 hypothetical protein; Provisional
Probab=84.51 E-value=5.9 Score=35.05 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=46.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.+||=.|++.|. ++..|+++|++|+.+|.+...++...+.....+.. +.++.+|+.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAE---------VLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHHH
Confidence 5678877754332 23344556999999999877665554444332211 26678887654
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+....
T Consensus 77 ~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 77 ALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 24689999887654
No 357
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.40 E-value=6.5 Score=33.74 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+.+||=.|++ |..+.. |+++|++|++++-++..+....+.....+.. +.++.+|+.+.
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGK---------ARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHH
Confidence 35678877764 444444 4556999999998876655554444333221 26778888664
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+.+|.|+++.....
T Consensus 75 ~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHhCCCCEEEECCCCCC
Confidence 147899998875543
No 358
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.27 E-value=6.3 Score=33.89 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=46.5
Q ss_pred CCCeEEEECCCccc--c-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS--L-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~--~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.++|-.|++.|. . ...++++|++|+.+|.++..++.+.+.....+.. +.++..|+.+.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTE---------VRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 36789988874433 2 2234456899999999987666655554433221 16677786553
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 75 QIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1568999987653
No 359
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.18 E-value=3.1 Score=36.05 Aligned_cols=42 Identities=38% Similarity=0.385 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.++.+||..|+|. |..+..+++. |.+|++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4678999999995 6666666665 8899999999887776644
No 360
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.15 E-value=6.8 Score=35.08 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.+||=.|++.|. ++..|++.|++|+.++.+++.++...+.....+.. +.++..|+.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~---------~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGD---------AMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHHHH
Confidence 5678888876544 23445566999999999987766655544332221 16778887664
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
-+..|+|+.+....
T Consensus 111 ~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 111 VEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 25789999876543
No 361
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.05 E-value=5.8 Score=34.09 Aligned_cols=72 Identities=13% Similarity=-0.043 Sum_probs=50.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++.+++.++...+...+.+.. +..+..|+.+.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~---------~~~~~~D~~~~~~~~~~~~ 74 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN---------VYSFQLKDFSQESIRHLFD 74 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC---------eEEEEccCCCHHHHHHHHH
Confidence 36789999998876 45566677999999999988877766655443321 14555665543
Q ss_pred -----CC-CccEEEEccc
Q 020710 217 -----DG-KYDTVVCLDV 228 (322)
Q Consensus 217 -----~~-~fD~V~~~~~ 228 (322)
-+ ..|+++.+..
T Consensus 75 ~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 75 AIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHHHhCCCCCEEEECCc
Confidence 25 8999998763
No 362
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.97 E-value=4.3 Score=39.51 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.++.+|+=+|||. |..+..+++. |+.|+++|.++..++.+++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3578999999995 4555555554 9999999999987776664
No 363
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.95 E-value=7.6 Score=33.88 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++.+++-++...+...+.....+ +.++..|+.+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGAR-------LLAARCDVLDEADVAAFAA 79 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCce-------EEEEEecCCCHHHHHHHHH
Confidence 46789989877654 3344556699999999998777665555443211111 15667777654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.++.+....
T Consensus 80 ~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 26789998876553
No 364
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.84 E-value=9.8 Score=33.23 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|++ |..+.. |+++|++|++++.+++.++...+.....+.. +.++..|+.+.
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRR---------AHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHH
Confidence 46788888864 444444 4556999999999887665554444332211 26777887664
Q ss_pred ------CCCccEEEEccc
Q 020710 217 ------DGKYDTVVCLDV 228 (322)
Q Consensus 217 ------~~~fD~V~~~~~ 228 (322)
-+..|+|+.+..
T Consensus 79 ~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 79 GQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 157899998654
No 365
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.66 E-value=7.9 Score=33.54 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCCeEEEECCCcccch----HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLA----IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+. |..+ ..|+++|++|+.++.++...+...+.+...+.. +.++.+|+.+.
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGK---------AIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCce---------EEEEECCCCCHHHHHHHH
Confidence 35678866664 3433 445556999999999987776666655443322 16778888664
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+..|+|+.+....+
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 76 DKVAERFGSVDILVSNAGIQI 96 (262)
T ss_pred HHHHHHcCCCCEEEECCccCC
Confidence 256899988776543
No 366
>PRK07677 short chain dehydrogenase; Provisional
Probab=83.64 E-value=6.4 Score=34.08 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=45.9
Q ss_pred CeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----------
Q 020710 150 IAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------- 216 (322)
+++|-.|++.|. .+..|++.|++|+.++-++..++...+.+...+.. +.++..|+.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQ---------VLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHHHHH
Confidence 567878876553 33445566999999999887666655554432211 26778887653
Q ss_pred ---CCCccEEEEccc
Q 020710 217 ---DGKYDTVVCLDV 228 (322)
Q Consensus 217 ---~~~fD~V~~~~~ 228 (322)
.+..|.|+.+..
T Consensus 73 ~~~~~~id~lI~~ag 87 (252)
T PRK07677 73 DEKFGRIDALINNAA 87 (252)
T ss_pred HHHhCCccEEEECCC
Confidence 257899997654
No 367
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.62 E-value=9.4 Score=32.69 Aligned_cols=72 Identities=13% Similarity=0.007 Sum_probs=46.6
Q ss_pred CCeEEEECCCcccchH----HHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAI----PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~----~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++|-.|+ +|..+. .|+++|.+|++++.++.-.+...+...+.+.. +.++.+|+.+.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVK---------AAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCc---------EEEEEccCCCHHHHHHHHH
Confidence 567888885 444444 44456999999999887655554444332211 26788888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|.|+.+....
T Consensus 76 ~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 76 ELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHHcCCCCEEEECCCcc
Confidence 15689999877653
No 368
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.62 E-value=8 Score=33.50 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|+ +|..+.. |+++|++|+.++-++..++...+.+...+.. +.++..|+.+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~---------~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLS---------AHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCce---------EEEEEccCCCHHHHHHHH
Confidence 4678998886 4444444 4456999999999887766655555433221 16777787663
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|.|+.+....
T Consensus 79 ~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 25689999877653
No 369
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.52 E-value=7.7 Score=33.59 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=48.1
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.++-+++-++...+.....+.. +.++..|+.+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGE---------AVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHHH
Confidence 5678877776543 34455566999999999887766665555443321 26777887664
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 77 ~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 77 AVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2578999987765
No 370
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.49 E-value=17 Score=31.39 Aligned_cols=101 Identities=20% Similarity=0.178 Sum_probs=58.8
Q ss_pred eEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHH-HhHHhhhccCCCCCCCCCceEEcccccC-------CCCc
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARK-KAEEELLADNGGEAPVMPKFEVKDLESL-------DGKY 220 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~f 220 (322)
+++=+|||. +..+..|.+.|..|+.+|.+++.++.... ... ...+++|..+. -..+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~--------------~~~v~gd~t~~~~L~~agi~~a 67 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD--------------THVVIGDATDEDVLEEAGIDDA 67 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc--------------eEEEEecCCCHHHHHhcCCCcC
Confidence 567788873 23345555669999999999988766322 111 16778887765 3679
Q ss_pred cEEEEcccccccCcchHHHHHHHHHh-ccCCeEEEEECCChhhHHHHHHhh
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSFAPKTFYYDLLKRVG 270 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~-~~~~~~il~~~~~~~~~~~~~~~~ 270 (322)
|+++.. ..+++...++-.+.. ..+..-++.-..+..+...+..++
T Consensus 68 D~vva~-----t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 68 DAVVAA-----TGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CEEEEe-----eCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcC
Confidence 999864 233445555555553 233333443333433344444433
No 371
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.24 E-value=9.1 Score=33.09 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=46.7
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||-.|++ |..+.. |++.|++|++++.+++.++............ +.++..|+.+.
T Consensus 8 ~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 8 EGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGA---------AHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHH
Confidence 46788888844 343333 4455899999999988776655544332211 16777787653
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 78 ~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 78 AHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 2578999987764
No 372
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.24 E-value=33 Score=30.62 Aligned_cols=163 Identities=18% Similarity=0.117 Sum_probs=83.1
Q ss_pred CCeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~~ 217 (322)
-.+|.=||+|.-. ++..++..|.+|+..|.+++.++.+.+...+... ...... ...++. ...|+.. -
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~-~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIS-TATDLED-L 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-eeCCHHH-h
Confidence 3568889998433 4556667799999999999988876554332100 000000 000001 1223332 2
Q ss_pred CCccEEEEcccccccCcc-h-HHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhh--------ccCCCCC--Ccc----
Q 020710 218 GKYDTVVCLDVLIHYPQS-K-ADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVG--------ELFPGPS--KAT---- 280 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~-~-~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~--------~~~~~~~--~~~---- 280 (322)
...|+|+. -+|.+ . ...+++.+...++++.++..+..+... .+..... .++.... ...
T Consensus 82 ~~aD~Vie-----avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~ 156 (292)
T PRK07530 82 ADCDLVIE-----AATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIR 156 (292)
T ss_pred cCCCEEEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeC
Confidence 45788884 34432 2 356777887776666555433333221 2222211 0111000 000
Q ss_pred --ccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 281 --RAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 281 --~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
...--..+.+..+++..|.+++... ....|..++++..
T Consensus 157 g~~t~~~~~~~~~~~~~~~gk~~v~~~-d~pg~i~nRl~~~ 196 (292)
T PRK07530 157 GIATDEATFEAAKEFVTKLGKTITVAE-DFPAFIVNRILLP 196 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEec-CcCChHHHHHHHH
Confidence 0000134556788888999888664 3456776766543
No 373
>PRK08643 acetoin reductase; Validated
Probab=83.13 E-value=8.2 Score=33.41 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|+..|. .+..|+++|++|+.+|.++...+...+.....+.. +.++..|+.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGK---------AIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHHH
Confidence 3467777765443 23344556999999999887766655554432211 26778888764
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|.++.+...
T Consensus 73 ~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 73 VVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2578999987654
No 374
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=83.09 E-value=7.5 Score=33.80 Aligned_cols=72 Identities=21% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+ +|..+..+ +++|++|+.++-++..++...+.....+.. +.++.+|+.+.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~---------~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGID---------ALWIAADVADEADIERLA 80 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEEccCCCHHHHHHHH
Confidence 3678888885 44544444 445999999999887666555444332221 26788888764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 81 ~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 81 EETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 2578999987654
No 375
>PRK07576 short chain dehydrogenase; Provisional
Probab=83.07 E-value=7.1 Score=34.19 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=44.8
Q ss_pred CCCeEEEECCCcccch----HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLA----IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|-.|.+ |..+ ..|++.|++|+.+|.+++.++...+.....+.. +.++..|+.+.
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPE---------GLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCc---------eEEEECCCCCHHHHHHHH
Confidence 46788888863 3333 344556999999999887665554444332211 15677787653
Q ss_pred ------CCCccEEEEccc
Q 020710 217 ------DGKYDTVVCLDV 228 (322)
Q Consensus 217 ------~~~fD~V~~~~~ 228 (322)
.+..|+++++..
T Consensus 78 ~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 78 AQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 256899997654
No 376
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.97 E-value=12 Score=32.47 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|++++.+++..+...+.+..... .+ +.++..|+.+.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~-------~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VD-------VAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-Cc-------eEEEEecCCCHHHHHHHHH
Confidence 35788888875443 2333556699999999998777665555443211 11 26777787654
Q ss_pred -CCCccEEEEcccc
Q 020710 217 -DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -~~~fD~V~~~~~l 229 (322)
.+..|.++.+...
T Consensus 78 ~~g~id~lv~~ag~ 91 (259)
T PRK06125 78 EAGDIDILVNNAGA 91 (259)
T ss_pred HhCCCCEEEECCCC
Confidence 3679999987654
No 377
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.82 E-value=26 Score=30.16 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCeEEEECCCcccchHHHHh----cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPLAK----QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++||=.|+ +|..+..+++ +|.+|++++.++...+...+.....+.. +.++.+|+.+.
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGK---------AIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHH
Confidence 467776665 4555555544 4899999999887666554444332211 26778887764
Q ss_pred -----CCCccEEEEccccccc
Q 020710 217 -----DGKYDTVVCLDVLIHY 232 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~~ 232 (322)
.+..|+|+.+....+.
T Consensus 74 ~~~~~~~~~d~vi~~a~~~~~ 94 (258)
T PRK12429 74 YAVETFGGVDILVNNAGIQHV 94 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCC
Confidence 2578999987754433
No 378
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=82.82 E-value=13 Score=32.36 Aligned_cols=69 Identities=25% Similarity=0.117 Sum_probs=46.4
Q ss_pred eEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 151 AVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
++|=.|++.|. .+..|+++|++|+.++.++..++.+.+.+...+ + +.++..|+.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~-------~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---E-------VYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---C-------ceEEEcCCCCHHHHHHHHHHHH
Confidence 57777876554 344455669999999999887766655554322 1 26778887653
Q ss_pred --CCCccEEEEcccc
Q 020710 217 --DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --~~~fD~V~~~~~l 229 (322)
.+..|+++.+...
T Consensus 72 ~~~g~id~li~naG~ 86 (259)
T PRK08340 72 ELLGGIDALVWNAGN 86 (259)
T ss_pred HhcCCCCEEEECCCC
Confidence 2679999987654
No 379
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.63 E-value=6.6 Score=34.15 Aligned_cols=72 Identities=29% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.++.+. ..+.+.+...+.+.. +.++..|+.+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRK---------VTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 46789999887664 2344556699999988773 333444433332211 26778887764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
No 380
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.55 E-value=6.3 Score=39.55 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCeEEEECCCc-ccch-HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 149 GIAVCDAGCGT-GSLA-IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G~~~-~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
..+|+=+|||. |... +.|.+.|.+++.+|.+++.++.+++. +. ..+.+|..+. -.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g~-----------~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----GM-----------KVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----CC-----------eEEEEeCCCHHHHHhcCCCc
Confidence 45788888873 3332 33444588999999999999888652 21 7889998775 257
Q ss_pred ccEEEEc
Q 020710 220 YDTVVCL 226 (322)
Q Consensus 220 fD~V~~~ 226 (322)
.|+|++.
T Consensus 465 A~~vvv~ 471 (621)
T PRK03562 465 AEVLINA 471 (621)
T ss_pred CCEEEEE
Confidence 8888863
No 381
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.31 E-value=7.4 Score=38.51 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=40.7
Q ss_pred CeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CC
Q 020710 150 IAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
.+|+=+||| ..+..++ ++|.+|+.+|.+++.++.+++. +. ..+.+|..+. -+
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----g~-----------~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER----GI-----------RAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----CC-----------eEEEcCCCCHHHHHhcCcc
Confidence 456666666 3444444 4488999999999988877642 21 7889998775 25
Q ss_pred CccEEEE
Q 020710 219 KYDTVVC 225 (322)
Q Consensus 219 ~fD~V~~ 225 (322)
+.|.+++
T Consensus 481 ~a~~viv 487 (558)
T PRK10669 481 CARWLLL 487 (558)
T ss_pred ccCEEEE
Confidence 7887764
No 382
>PRK08589 short chain dehydrogenase; Validated
Probab=82.30 E-value=8.3 Score=33.95 Aligned_cols=73 Identities=27% Similarity=0.223 Sum_probs=46.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|+++|++|+.++.+ ..++...+.+.+.+.. +.++..|+.+.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGK---------AKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCe---------EEEEEeecCCHHHHHHHHH
Confidence 36688888886654 344556679999999988 4444433333332211 16777887654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 75 ~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHcCCcCEEEECCCCC
Confidence 26789999877553
No 383
>PRK09242 tropinone reductase; Provisional
Probab=82.29 E-value=10 Score=32.94 Aligned_cols=75 Identities=20% Similarity=0.085 Sum_probs=48.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|-.|++.|. ++..|++.|++|+.++.+++.++...+.........+ +.++..|+.+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPERE-------VHGLAADVSDDEDRRAILD 80 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCe-------EEEEECCCCCHHHHHHHHH
Confidence 36788999886543 3344556699999999988776655555433211111 26678887653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 81 ~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 81 WVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 3678999987765
No 384
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.28 E-value=2.5 Score=37.05 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHh
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~ 190 (322)
.++..+.+.++.. +..+++|+-||+|..+..+...+.+|+.-|+++..+...+..+
T Consensus 7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 4567788887762 4789999999999999888778889999999998877666333
No 385
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=82.26 E-value=10 Score=33.79 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=57.5
Q ss_pred HhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-
Q 020710 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 140 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 216 (322)
++...++..++.|+-+| -.-..+.+++-. ..++..|||++..++..++...+.+..+ ++....|+.++
T Consensus 144 lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~--------ie~~~~Dlr~pl 214 (354)
T COG1568 144 LMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN--------IEAFVFDLRNPL 214 (354)
T ss_pred eeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc--------hhheeehhcccC
Confidence 33444566788899999 444455555544 4579999999999999999988888764 37788888765
Q ss_pred ----CCCccEEEE
Q 020710 217 ----DGKYDTVVC 225 (322)
Q Consensus 217 ----~~~fD~V~~ 225 (322)
..+||+.+.
T Consensus 215 pe~~~~kFDvfiT 227 (354)
T COG1568 215 PEDLKRKFDVFIT 227 (354)
T ss_pred hHHHHhhCCeeec
Confidence 589999874
No 386
>PRK06196 oxidoreductase; Provisional
Probab=82.23 E-value=26 Score=31.62 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++. ..+.. |++.|++|++++.+++..+...+.... +.++.+|+.+.
T Consensus 25 ~~k~vlITGasg-gIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~-------------v~~~~~Dl~d~~~v~~~~ 90 (315)
T PRK06196 25 SGKTAIVTGGYS-GLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG-------------VEVVMLDLADLESVRAFA 90 (315)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh-------------CeEEEccCCCHHHHHHHH
Confidence 457888888654 44444 445699999999887765544333221 16778888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 91 ~~~~~~~~~iD~li~nAg~~ 110 (315)
T PRK06196 91 ERFLDSGRRIDILINNAGVM 110 (315)
T ss_pred HHHHhcCCCCCEEEECCCCC
Confidence 26789999877653
No 387
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.21 E-value=3.6 Score=38.04 Aligned_cols=45 Identities=38% Similarity=0.447 Sum_probs=35.1
Q ss_pred CCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHH
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~ 192 (322)
++.+|+=+|||. |.++..+++. |+ +|+.+|.+++-++.|++....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~ 215 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA 215 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC
Confidence 344899999995 6666666666 54 699999999999999886543
No 388
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.13 E-value=9 Score=33.12 Aligned_cols=71 Identities=27% Similarity=0.243 Sum_probs=45.3
Q ss_pred CeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 150 IAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 150 ~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
++||-.|++.|.- +..|++.|++|++++-++...+.........+.. +.++.+|+.+. .+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA---------LRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------ceEEEeeCCCHHHHHHHhcCC
Confidence 4688888754432 3334556999999998876655544443332221 26778888664 457
Q ss_pred ccEEEEcccc
Q 020710 220 YDTVVCLDVL 229 (322)
Q Consensus 220 fD~V~~~~~l 229 (322)
.|.|+.+...
T Consensus 74 id~vi~~ag~ 83 (257)
T PRK09291 74 VDVLLNNAGI 83 (257)
T ss_pred CCEEEECCCc
Confidence 9999987553
No 389
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=81.91 E-value=11 Score=30.89 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=61.7
Q ss_pred ECCCcccchHHHHhc---CCEEEEEeCCH--HHHHHHH---HHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 155 AGCGTGSLAIPLAKQ---GAIVSASDISA--AMVAEAR---KKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 155 vGcG~G~~~~~la~~---~~~v~gvD~s~--~~l~~a~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
||=|.=.++..|++. +..+++.-... +..+... .++.+....+ + ......|+..+ .+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~------~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-V------TVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-C------ccccCCCCCcccccccccCCc
Confidence 555666666777766 34566655443 3332222 2222221111 0 02344465554 478
Q ss_pred ccEEEEcccccccC-------------cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 220 YDTVVCLDVLIHYP-------------QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 220 fD~V~~~~~l~~~~-------------~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
||.|+-+.- |.. ..-+..+++....++..+|-|.++..+- .. ++
T Consensus 76 FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~-------------------~p--y~ 132 (166)
T PF10354_consen 76 FDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG-------------------QP--YD 132 (166)
T ss_pred CCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-------------------CC--Cc
Confidence 999998764 333 1124566666666664443332221110 00 12
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 020710 287 EADVERALQKVGWKIRKRG 305 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~ 305 (322)
.-.++++..++||.+++..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred cccHHHHHHhcCCEEEEEe
Confidence 2367788999999998753
No 390
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.68 E-value=10 Score=34.71 Aligned_cols=73 Identities=19% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|.- +..|+++|++|+.++-+++.++...+.+...+.. +.++.+|+.+.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~---------~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE---------ALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc---------EEEEEecCCCHHHHHHHHH
Confidence 356788888755442 3445567999999999987776665555443322 16778887664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHCCCCCEEEECCCc
Confidence 2579999977654
No 391
>PRK06720 hypothetical protein; Provisional
Probab=81.54 E-value=15 Score=30.10 Aligned_cols=43 Identities=33% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHh
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~ 190 (322)
+++.+|-.|.+.|. ....|++.|.+|+.+|.+...++...+..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l 60 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI 60 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35678888876544 34445667999999999877665444443
No 392
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.53 E-value=40 Score=32.92 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCeEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~~ 217 (322)
-.+|-=||+|+= .++..++..|..|+..|.+++.++.+.++..+.-. ..+... ...++. ...|+..+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~-~~~~~~~l- 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLI-PVTDLHAL- 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccE-EeCCHHHh-
Confidence 456888999842 34455667799999999999999887665432110 000000 000001 12333333
Q ss_pred CCccEEEEcccccccCcc-h-HHHHHHHHHhccCCeEEEEECCChhhHHH-HHHhh-------c-cCCCCC--C---ccc
Q 020710 218 GKYDTVVCLDVLIHYPQS-K-ADGMIAHLASLAEKRLILSFAPKTFYYDL-LKRVG-------E-LFPGPS--K---ATR 281 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~-~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~-~~~~~-------~-~~~~~~--~---~~~ 281 (322)
...|+|+. -++++ . ...+++.+....+++.|+..+..+..... ...+. - ++.... + ...
T Consensus 83 ~~aDlVIE-----av~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~ 157 (503)
T TIGR02279 83 ADAGLVIE-----AIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVS 157 (503)
T ss_pred CCCCEEEE-----cCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeC
Confidence 35788884 44432 1 34677888777788888776555543332 11111 1 111000 0 000
Q ss_pred c---ccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 282 A---YLHAEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 282 ~---~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
+ .--..+.+..+++..|-..+.+. ....|..++++
T Consensus 158 g~~Ts~e~~~~~~~l~~~lgk~pv~v~-d~pGfi~Nrl~ 195 (503)
T TIGR02279 158 GLATAAEVAEQLYETALAWGKQPVHCH-STPGFIVNRVA 195 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeEeC-CCCCcHHHHHH
Confidence 0 00134556778888899888774 23555555554
No 393
>PRK07024 short chain dehydrogenase; Provisional
Probab=81.47 E-value=7.8 Score=33.70 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=46.0
Q ss_pred CeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----------
Q 020710 150 IAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------- 216 (322)
++||=.|+..|. ++..|+++|++|+.+|.+++.++...+.....+ + +.++.+|+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~-------~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---R-------VSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---e-------eEEEEcCCCCHHHHHHHHHHH
Confidence 567777775443 234455569999999998876655444332211 1 27888888764
Q ss_pred ---CCCccEEEEcccccc
Q 020710 217 ---DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ---~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+....+
T Consensus 73 ~~~~g~id~lv~~ag~~~ 90 (257)
T PRK07024 73 IAAHGLPDVVIANAGISV 90 (257)
T ss_pred HHhCCCCCEEEECCCcCC
Confidence 256899998776543
No 394
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=81.24 E-value=15 Score=31.42 Aligned_cols=95 Identities=24% Similarity=0.218 Sum_probs=50.9
Q ss_pred eEEEEC-CCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 151 AVCDAG-CGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 151 ~VLDvG-cG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
+|.=|| +|. | .++..|++.|.+|+..+.+++.++...+..... +... + .......+..+.....|+|+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g-~-----~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGG-S-----DIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccC-C-----CceEEEeChHHHHhcCCEEEEE
Confidence 467786 663 3 355666677889999999887765554432211 0000 0 0012222322223467988864
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++......+++.+...+.+..++++
T Consensus 76 -----vp~~~~~~~l~~l~~~l~~~vvI~~ 100 (219)
T TIGR01915 76 -----VPWDHVLKTLESLRDELSGKLVISP 100 (219)
T ss_pred -----CCHHHHHHHHHHHHHhccCCEEEEe
Confidence 3443355666666554445566655
No 395
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=81.21 E-value=10 Score=32.83 Aligned_cols=73 Identities=27% Similarity=0.196 Sum_probs=47.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||-.|++.|. +...|+++|.+++.++.+...++.........+.. +.++..|+.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---------AFACRCDITSEQELSALAD 80 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHHH
Confidence 36789999977654 23445566999999998877766554444332211 15677787654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 81 ~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 81 FALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
No 396
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=81.05 E-value=29 Score=30.01 Aligned_cols=71 Identities=25% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|+++|++|+.+|.++. .+...+.....+.. +.++..|+.+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGE---------ALALTADLETYAGAQAAMA 76 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCe---------EEEEEEeCCCHHHHHHHHH
Confidence 35678888876544 34445566999999998764 22233333222211 15677787663
Q ss_pred -----CCCccEEEEccc
Q 020710 217 -----DGKYDTVVCLDV 228 (322)
Q Consensus 217 -----~~~fD~V~~~~~ 228 (322)
.+..|+++.+..
T Consensus 77 ~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 77 AAVEAFGRIDVLINNVG 93 (260)
T ss_pred HHHHHcCCCeEEEECCc
Confidence 257899987764
No 397
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.02 E-value=5.1 Score=35.81 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=43.7
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~ 194 (322)
..++..|||.-+|+|..+......|-..+|+|+++.-++.+.++.....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 3468999999999999999888889999999999999999999987643
No 398
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.01 E-value=13 Score=29.47 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCCeEEEECCCc--ccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 148 KGIAVCDAGCGT--GSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~--G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
++.+|+-+|||. ......+.+.+ .+|+.+|.+++..+...+....... .....|..+.-...|+|+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-----------AIAYLDLEELLAEADLII 86 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc-----------ceeecchhhccccCCEEE
Confidence 467899999973 22334444554 6799999988766554433322100 122334333346789999
Q ss_pred Ecccccc
Q 020710 225 CLDVLIH 231 (322)
Q Consensus 225 ~~~~l~~ 231 (322)
++-....
T Consensus 87 ~~~~~~~ 93 (155)
T cd01065 87 NTTPVGM 93 (155)
T ss_pred eCcCCCC
Confidence 8765443
No 399
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=80.96 E-value=9.9 Score=29.64 Aligned_cols=90 Identities=23% Similarity=0.204 Sum_probs=47.6
Q ss_pred CCCeEEEECCCc-cc-chHHHHhcCCEEEEEe-CCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 148 KGIAVCDAGCGT-GS-LAIPLAKQGAIVSASD-ISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~-~~~~la~~~~~v~gvD-~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
+..+|-=||+|. |. ++..|.+.|..|.++- .++...+.+.+... .....+..+.....|+|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~---------------~~~~~~~~~~~~~aDlv~ 73 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG---------------AGAILDLEEILRDADLVF 73 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T---------------T-----TTGGGCC-SEEE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc---------------cccccccccccccCCEEE
Confidence 467899999984 33 3455556699998885 33323233322211 122334445456789999
Q ss_pred EcccccccCcchHHHHHHHHHhc--cCCeEEEEEC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASL--AEKRLILSFA 257 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~--~~~~~il~~~ 257 (322)
. -.||+.+..+.+.|... ..++-++...
T Consensus 74 i-----avpDdaI~~va~~La~~~~~~~g~iVvHt 103 (127)
T PF10727_consen 74 I-----AVPDDAIAEVAEQLAQYGAWRPGQIVVHT 103 (127)
T ss_dssp E------S-CCHHHHHHHHHHCC--S-TT-EEEES
T ss_pred E-----EechHHHHHHHHHHHHhccCCCCcEEEEC
Confidence 5 68888889999999875 4445444433
No 400
>PRK07791 short chain dehydrogenase; Provisional
Probab=80.92 E-value=13 Score=33.13 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCH---------HHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISA---------AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~---------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
+++++|-.|++.|.- +..|++.|++|+.+|.+. ..++...+.+...+.. +.++..|+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~~ 75 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGE---------AVANGDDIAD 75 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCc---------eEEEeCCCCC
Confidence 467899999877653 344566799998888764 4444333333322211 1566778765
Q ss_pred C-------------CCCccEEEEccccc
Q 020710 216 L-------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 216 ~-------------~~~fD~V~~~~~l~ 230 (322)
. -+..|.++.+..+.
T Consensus 76 ~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 76 WDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3 26789999876653
No 401
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=80.81 E-value=12 Score=32.03 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=45.7
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.++|-.|++.|. ++..|++.|++|+.++.+....+...+.....+.. +.++.+|+.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGN---------AQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHHH
Confidence 5678888865433 23344556899999999887666555444332211 26788887653
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|+|+.+...
T Consensus 74 ~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2468988877654
No 402
>PRK12829 short chain dehydrogenase; Provisional
Probab=80.80 E-value=11 Score=32.76 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|-.|++ |..+..+ +++|++|++++-+++..+...+..... + +.++..|+.+.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~-------~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----K-------VTATVADVADPAQVERVF 77 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----c-------eEEEEccCCCHHHHHHHH
Confidence 56789988876 4444444 445999999999877665444333221 1 16677787654
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 78 ~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1578999987654
No 403
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.74 E-value=4.1 Score=31.24 Aligned_cols=32 Identities=44% Similarity=0.503 Sum_probs=26.5
Q ss_pred CcccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 158 GTGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 158 G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
|.|.++..+++. |++|+++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 457788888877 99999999999988887654
No 404
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.73 E-value=11 Score=32.30 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+.++|-.|+ +|.++..+ +++|++|+.++.++.-.+...+.....+. + +.++..|+.+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~-------~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV--K-------VVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--e-------EEEEECCCCCHHHHHHHHH
Confidence 567888885 55555544 45599999999987655544333332221 1 26778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|.|+++...
T Consensus 77 ~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 77 QLKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHHcCCccEEEEcCcc
Confidence 1478999987654
No 405
>PRK07326 short chain dehydrogenase; Provisional
Probab=80.65 E-value=11 Score=31.97 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=45.6
Q ss_pred CCeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+.+||-.|+ +|.++..++ ++|++|++++.++...+...+..... .+ +.++.+|+.+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~-------~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GN-------VLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---Cc-------EEEEEccCCCHHHHHHHHH
Confidence 567888885 555554444 45899999998886655554443321 11 26778887654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+....
T Consensus 75 ~~~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 14789999776543
No 406
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.49 E-value=12 Score=32.55 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.++|=.|++.|. ++..|+++|++|++++.+++-++...+.. ..+ .+ +.++..|+.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~--~~-------~~~~~~D~~d~~~~~~~~~ 73 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP--GR-------HRWVVADLTSEAGREAVLA 73 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC--Cc-------eEEEEccCCCHHHHHHHHH
Confidence 35678888876544 34455667999999999887666554443 111 11 26778887664
Q ss_pred ----CCCccEEEEcccccc
Q 020710 217 ----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~ 231 (322)
.+..|.|+.+....+
T Consensus 74 ~~~~~~~id~lv~~ag~~~ 92 (263)
T PRK09072 74 RAREMGGINVLINNAGVNH 92 (263)
T ss_pred HHHhcCCCCEEEECCCCCC
Confidence 156899998866543
No 407
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=80.40 E-value=12 Score=32.97 Aligned_cols=73 Identities=19% Similarity=0.054 Sum_probs=47.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. ....|++.|++|+.++.+++..+...+.....+.. +.++..|+.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGE---------ALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHH
Confidence 35678888876544 23445566999999999877665554444332211 16778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 80 ~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 80 QILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
No 408
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.34 E-value=11 Score=32.48 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+ +|..+..+ +++|.+|+.++-++...+...+...+.+.. ..++..|+.+.
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGT---------AIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHH
Confidence 3567888874 44444444 455999999998876655544443322211 15677887664
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|+|+.+...
T Consensus 75 ~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1568999987765
No 409
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.29 E-value=13 Score=31.92 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|-.|+ +|.++.. |++.|++|+.++.++..++...+.........+ +.++.+|+.+.
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~ 73 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIK-------VAVAALDVNDHDQVFEVFA 73 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCce-------EEEEEcCCCCHHHHHHHHH
Confidence 356887775 4554444 445589999999988777665554433211111 26778887764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+..+.
T Consensus 74 ~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 74 EFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25689999876553
No 410
>PRK05650 short chain dehydrogenase; Provisional
Probab=80.01 E-value=12 Score=32.87 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=44.8
Q ss_pred eEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 151 AVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
+||-.|+..|. ++..|++.|.+|+.++.+..-++...+.....+.. +.++.+|+.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGD---------GFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEccCCCHHHHHHHHHHHH
Confidence 57767764433 23444556999999999877666554444332221 26778887654
Q ss_pred --CCCccEEEEccccc
Q 020710 217 --DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 --~~~fD~V~~~~~l~ 230 (322)
.+.+|.++.+....
T Consensus 73 ~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 73 EKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHcCCCCEEEECCCCC
Confidence 25799999876653
No 411
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.60 E-value=5.1 Score=32.03 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=24.4
Q ss_pred EECCCcc--cchHHHH--hc--CCEEEEEeCCHHHHHHHHHH
Q 020710 154 DAGCGTG--SLAIPLA--KQ--GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 154 DvGcG~G--~~~~~la--~~--~~~v~gvD~s~~~l~~a~~~ 189 (322)
|||++.| .....+. .. +.+|+++|++|..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555543 22 67899999999999988888
No 412
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.31 E-value=9.7 Score=32.69 Aligned_cols=70 Identities=13% Similarity=-0.020 Sum_probs=42.8
Q ss_pred CeEEEECCCcccchH----HHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 150 IAVCDAGCGTGSLAI----PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~----~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++|+-.|+. |..+. .|++.|++|+++|.++.-.+...+...... ..+ +.++..|+.+.
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~-------~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVA-------VSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCe-------EEEEecCCCChHHHHHHHHH
Confidence 467877755 44444 445559999999998866554433332211 111 27788887764
Q ss_pred -CCCccEEEEccc
Q 020710 217 -DGKYDTVVCLDV 228 (322)
Q Consensus 217 -~~~fD~V~~~~~ 228 (322)
...+|.++.+..
T Consensus 73 ~~~~~d~vv~~ag 85 (243)
T PRK07102 73 LPALPDIVLIAVG 85 (243)
T ss_pred HhhcCCEEEECCc
Confidence 235799997654
No 413
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=79.14 E-value=6.8 Score=28.33 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=51.2
Q ss_pred EEEECCCccc--chHHHHhcC---CEEE-EEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 152 VCDAGCGTGS--LAIPLAKQG---AIVS-ASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 152 VLDvGcG~G~--~~~~la~~~---~~v~-gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
|.=||||.=. ++..+.+.| .+++ +.+.+++.++...+++.- .+...+..+.-...|+|+.
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV--------------QATADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT--------------EEESEEHHHHHHHTSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc--------------ccccCChHHhhccCCEEEE
Confidence 3445555322 233344557 7888 449999887776655431 2333243333335799986
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
-+++..+..+++.+....++..++++.
T Consensus 68 -----av~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 68 -----AVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp ------S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred -----EECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 455555778888885567888888764
No 414
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.64 E-value=12 Score=29.24 Aligned_cols=73 Identities=22% Similarity=0.153 Sum_probs=44.6
Q ss_pred CCCeEEEECCCccc--chHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCcc
Q 020710 148 KGIAVCDAGCGTGS--LAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~--~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD 221 (322)
++.+||=+|+|.-. ....|+..|++ ++.+.-+.+-.+...+.+... .+...++.++ ...+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-------------NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-------------SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-------------ccceeeHHHHHHHHhhCC
Confidence 58899999997322 23445556775 999988876544444333111 3444444444 46799
Q ss_pred EEEEcccccccC
Q 020710 222 TVVCLDVLIHYP 233 (322)
Q Consensus 222 ~V~~~~~l~~~~ 233 (322)
+|+..-...+.+
T Consensus 78 ivI~aT~~~~~~ 89 (135)
T PF01488_consen 78 IVINATPSGMPI 89 (135)
T ss_dssp EEEE-SSTTSTS
T ss_pred eEEEecCCCCcc
Confidence 999887765554
No 415
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.37 E-value=6.4 Score=31.76 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=56.8
Q ss_pred eEEEECCCcccch--HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh-hccCCCCCCCCCceEEcccccCCCCccEEEEcc
Q 020710 151 AVCDAGCGTGSLA--IPLAKQGAIVSASDISAAMVAEARKKAEEEL-LADNGGEAPVMPKFEVKDLESLDGKYDTVVCLD 227 (322)
Q Consensus 151 ~VLDvGcG~G~~~--~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~ 227 (322)
+|.=+|+|.+..+ ..++.+|.+|+-.+.+++.++..++.-.... ..+ .....--....|+++.-...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~---~~l~~~i~~t~dl~~a~~~ad~Iii-- 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPG---IKLPENIKATTDLEEALEDADIIII-- 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTT---SBEETTEEEESSHHHHHTT-SEEEE--
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCC---cccCcccccccCHHHHhCcccEEEe--
Confidence 3667888877754 4455668899999999988777665432111 000 0000001234455443345688884
Q ss_pred cccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 228 VLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
-+|....+.+++++...++.+.++...++
T Consensus 76 ---avPs~~~~~~~~~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 76 ---AVPSQAHREVLEQLAPYLKKGQIIISATK 104 (157)
T ss_dssp ----S-GGGHHHHHHHHTTTSHTT-EEEETS-
T ss_pred ---cccHHHHHHHHHHHhhccCCCCEEEEecC
Confidence 55655577899999887655555544443
No 416
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.24 E-value=6.1 Score=37.04 Aligned_cols=45 Identities=16% Similarity=-0.088 Sum_probs=35.7
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAE 191 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~ 191 (322)
.++.+||-|.+|......+|.....+|++||+||.++...+=+..
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 367899999888777776666667889999999999887765543
No 417
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.16 E-value=8.2 Score=34.55 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=79.6
Q ss_pred CCeEEEECCC--cccchHHHHhcCCE--EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc-ccCCCCccEE
Q 020710 149 GIAVCDAGCG--TGSLAIPLAKQGAI--VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL-ESLDGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG--~G~~~~~la~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~fD~V 223 (322)
..+|+=+|.| .|.+++.+.+.|.. +++.|.+...++.+.+. +..+ +. ..+. .......|+|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d---------~~-~~~~~~~~~~~aD~V 68 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID---------EL-TVAGLAEAAAEADLV 68 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc---------cc-ccchhhhhcccCCEE
Confidence 4578888877 45566777777775 58888887776666432 2211 11 1111 2224568999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeE-EEEECC--ChhhHHHHHHhhc---cCCC-CCCcc----cc-----cc---
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAP--KTFYYDLLKRVGE---LFPG-PSKAT----RA-----YL--- 284 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~--~~~~~~~~~~~~~---~~~~-~~~~~----~~-----~~--- 284 (322)
+. -+|-....++++++...++++. +..+.. ......+.+...+ +... +-.++ .. +.
T Consensus 69 iv-----avPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp 143 (279)
T COG0287 69 IV-----AVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTP 143 (279)
T ss_pred EE-----eccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcC
Confidence 95 4554446788888886555554 444421 1122222222212 1111 11111 00 00
Q ss_pred ---C---CHHHHHHHHHHCCCEEEEEeeeecceehhh
Q 020710 285 ---H---AEADVERALQKVGWKIRKRGLITTQFYFAR 315 (322)
Q Consensus 285 ---~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~ 315 (322)
. ...++.++++..|=+++..+...++...+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~ 180 (279)
T COG0287 144 SEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAA 180 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHH
Confidence 0 256777888999988888776666554443
No 418
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.07 E-value=13 Score=32.15 Aligned_cols=72 Identities=29% Similarity=0.346 Sum_probs=44.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. .+..|++.|++|+.++.+.. +...+.....+.. +.++..|+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRK---------FHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCe---------EEEEEeCCCCHHHHHHHHH
Confidence 46789988877655 23445566999998876542 2222222222211 26778887664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 76 ~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 76 QAVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 26799999876553
No 419
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.03 E-value=20 Score=31.24 Aligned_cols=72 Identities=21% Similarity=0.145 Sum_probs=44.6
Q ss_pred CCCeEEEECCCcc-cch----HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTG-SLA----IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G-~~~----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
+++.+|-.|++.| ..+ ..|++.|++|+.+|.+....+..++...+.+ . +.++..|+.+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-~---------~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD-A---------PIFLPLDVREPGQLEAV 78 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc-c---------ceEEecCcCCHHHHHHH
Confidence 4678999998752 443 4455669999988887654333333222211 0 14667787654
Q ss_pred -------CCCccEEEEcccc
Q 020710 217 -------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -------~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 79 ~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 79 FARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHcCCCCEEEEcCcc
Confidence 2678999987654
No 420
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.97 E-value=11 Score=32.66 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=45.6
Q ss_pred CeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----------
Q 020710 150 IAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------- 216 (322)
+++|-.|++.|. ++..|+++|++|+.++.+++.++...+... + .+ +.++.+|+.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~-------~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GN-------AWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--Cc-------eEEEEecCCCHHHHHHHHHHH
Confidence 357888876543 334455669999999998876665544332 1 11 27788888663
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
.++.|.|+.+....
T Consensus 71 ~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 71 AAATGGRLDVLFNNAGIL 88 (260)
T ss_pred HHHcCCCCCEEEECCCCC
Confidence 24689999877653
No 421
>PRK08303 short chain dehydrogenase; Provisional
Probab=77.83 E-value=11 Score=33.96 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=44.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCH----------HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISA----------AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~----------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.++++|-.|++.|. .+..|++.|++|+.++.+. +-++...+.....+.. +.++..|+.
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~ 77 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGR---------GIAVQVDHL 77 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCc---------eEEEEcCCC
Confidence 46789999987664 2444556699999988763 2333333333322211 156778876
Q ss_pred cC-------------CCCccEEEEcc
Q 020710 215 SL-------------DGKYDTVVCLD 227 (322)
Q Consensus 215 ~~-------------~~~fD~V~~~~ 227 (322)
+. -+..|+++.+.
T Consensus 78 ~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 78 VPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECC
Confidence 64 26789998875
No 422
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.82 E-value=11 Score=32.71 Aligned_cols=68 Identities=25% Similarity=0.247 Sum_probs=42.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||-+|++.|. +...++++|++|+++|.++.-++...+... . .++..|+.+.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~---------~~~~~D~~~~~~~~~~~~ 71 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG-----G---------LFVPTDVTDEDAVNALFD 71 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC-----C---------cEEEeeCCCHHHHHHHHH
Confidence 46789999986443 233344569999999988765443332221 1 4566676553
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+|+.+...
T Consensus 72 ~~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 72 TAAETYGSVDIAFNNAGI 89 (255)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2578999887654
No 423
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=77.78 E-value=11 Score=32.75 Aligned_cols=70 Identities=27% Similarity=0.266 Sum_probs=46.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.++-+++.++...+... .+ +.++..|+.+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~-------~~~~~~D~~~~~~~~~~~~ 72 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----DH-------VLVVEGDVTSYADNQRAVD 72 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----Cc-------ceEEEccCCCHHHHHHHHH
Confidence 35688888876544 234455669999999998876655443321 11 16777887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 73 ~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 73 QTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 2578999987665
No 424
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=77.69 E-value=8.7 Score=34.71 Aligned_cols=87 Identities=23% Similarity=0.148 Sum_probs=49.3
Q ss_pred CCeEEEECCCc--ccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 149 GIAVCDAGCGT--GSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
..+|.=||+|. +.++..+.+.|. +|+++|.+++.++.+++ .+.. .....+..+.-...|+|+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~----------~~~~~~~~~~~~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG----------DRVTTSAAEAVKGADLVI 71 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC----------ceecCCHHHHhcCCCEEE
Confidence 35789999886 334455555564 79999999887665543 2211 111222222234579998
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
.+- |......+++.+...++++.++
T Consensus 72 iav-----p~~~~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 72 LCV-----PVGASGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred ECC-----CHHHHHHHHHHHHhhCCCCCEE
Confidence 643 3333445666666555544444
No 425
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=77.55 E-value=2.1 Score=40.04 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred cccccCCHHHHHHHHHHCC-CEEEEEeeee
Q 020710 280 TRAYLHAEADVERALQKVG-WKIRKRGLIT 308 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aG-f~vv~~~~~~ 308 (322)
...|..+.+|+++.+++.| |++.+.+...
T Consensus 282 iP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 282 IPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311 (386)
T ss_pred CcccCCCHHHHHHHHhhcCCEEeeeeEEee
Confidence 3456779999999999988 6666666544
No 426
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=77.49 E-value=13 Score=32.45 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC--EEEEEeCCHHH----HHHHHHHhHHhhhccCCCCCCC
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA--IVSASDISAAM----VAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~--~v~gvD~s~~~----l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
++.+-++--+......++.+||=+|++.|+.-.++..- |. -|++|++|+.. +..|+++ .
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------------t 205 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------------T 205 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------------C
Confidence 34444444444433568899999999999998888776 33 38999998643 3333322 2
Q ss_pred CCceEEcccccC------CCCccEEEEcccccccCcchHHHHHH
Q 020710 205 MPKFEVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIA 242 (322)
Q Consensus 205 ~~~~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~ 242 (322)
++--+..|+..+ -+-.|+|++ .++++....++.
T Consensus 206 NiiPIiEDArhP~KYRmlVgmVDvIFa-----Dvaqpdq~Riva 244 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYRMLVGMVDVIFA-----DVAQPDQARIVA 244 (317)
T ss_pred CceeeeccCCCchheeeeeeeEEEEec-----cCCCchhhhhhh
Confidence 235566677654 345677764 455444434433
No 427
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.32 E-value=65 Score=31.53 Aligned_cols=106 Identities=24% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~~ 217 (322)
-.+|-=||+|+ | .++..++..|..|+..|.+++.++.+.++..+.-. ..++.. ...++. ...|...+
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~-~~~~~~~~- 84 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLR-PVEALADL- 84 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHHh-
Confidence 35788899984 2 35556677799999999999999887655542110 000000 000001 12233332
Q ss_pred CCccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChh
Q 020710 218 GKYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
..-|+|+. -++++. ...+++++..+.+++.++..+..+.
T Consensus 85 ~~aDlViE-----av~E~~~vK~~vf~~l~~~~~~~ailasntStl 125 (507)
T PRK08268 85 ADCDLVVE-----AIVERLDVKQALFAQLEAIVSPDCILATNTSSL 125 (507)
T ss_pred CCCCEEEE-----cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 35788884 344322 3467777877777777776544443
No 428
>PRK09186 flagellin modification protein A; Provisional
Probab=77.25 E-value=16 Score=31.56 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=45.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ....|++.|++|+.++.+++.++...+.+........ +.++.+|+.+.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dl~d~~~~~~~~~ 75 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKK-------LSLVELDITDQESLEEFLS 75 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCc-------eeEEEecCCCHHHHHHHHH
Confidence 35678888875433 2344455699999999887766655544432111111 15667888764
Q ss_pred -----CCCccEEEEcc
Q 020710 217 -----DGKYDTVVCLD 227 (322)
Q Consensus 217 -----~~~fD~V~~~~ 227 (322)
-+..|+|+.+.
T Consensus 76 ~~~~~~~~id~vi~~A 91 (256)
T PRK09186 76 KSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHcCCccEEEECC
Confidence 24589999775
No 429
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.96 E-value=18 Score=31.45 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=44.5
Q ss_pred CeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 150 IAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
.+||-.|+. |..+.. |++.|++|++++.++.-.+...+.....+. + +.++..|+.+.
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~-------~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG--E-------ALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--c-------EEEEEccCCCHHHHHHHHHH
Confidence 457766654 334443 445589999999987666555444433221 1 26778887664
Q ss_pred ----CCCccEEEEcccccc
Q 020710 217 ----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~ 231 (322)
-+..|.|+.+.....
T Consensus 72 ~~~~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 72 AVARFGGIDILVNNAGITM 90 (263)
T ss_pred HHHHcCCCCEEEECCCccc
Confidence 146899998765433
No 430
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=76.75 E-value=23 Score=30.61 Aligned_cols=74 Identities=22% Similarity=0.133 Sum_probs=45.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+++||-.|++.|. ++..|+++|++|+.+|.+....+...+.........+ +.++..|+.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~i~~~~~~ 74 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGM-------AYGFGADATSEQSVLALSRG 74 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCce-------eEEEEccCCCHHHHHHHHHH
Confidence 3568888865432 3344556699999999987766554443332110011 26778887653
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 75 ~~~~~~~id~vv~~ag~ 91 (259)
T PRK12384 75 VDEIFGRVDLLVYNAGI 91 (259)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2578999987654
No 431
>PRK05993 short chain dehydrogenase; Provisional
Probab=76.73 E-value=33 Score=30.21 Aligned_cols=66 Identities=21% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+++||-.|++.|. ++..|++.|++|++++-+++.++...+ .+ +.++..|+.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~-----------~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG-----------LEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC-----------ceEEEccCCCHHHHHHHHHH
Confidence 4578888875443 234445569999999998876654322 11 16677787653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+|+.+..+
T Consensus 69 ~~~~~~g~id~li~~Ag~ 86 (277)
T PRK05993 69 VLELSGGRLDALFNNGAY 86 (277)
T ss_pred HHHHcCCCccEEEECCCc
Confidence 1578999987654
No 432
>PRK05872 short chain dehydrogenase; Provisional
Probab=76.65 E-value=14 Score=32.95 Aligned_cols=74 Identities=27% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||-.|++.|. .+..|++.|++|+.++.+++.++...+.+.. ..+ +..+..|+.+.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~-------~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDR-------VLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCc-------EEEEEecCCCHHHHHHHHH
Confidence 46788988876554 3344556699999999988766655443321 111 13445777653
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+|+.+..+..
T Consensus 78 ~~~~~~g~id~vI~nAG~~~ 97 (296)
T PRK05872 78 EAVERFGGIDVVVANAGIAS 97 (296)
T ss_pred HHHHHcCCCCEEEECCCcCC
Confidence 267999999876543
No 433
>PRK06182 short chain dehydrogenase; Validated
Probab=76.56 E-value=34 Score=29.91 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=43.4
Q ss_pred CCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++||=.|++.| .+..+ ++.|++|++++-+++.++... ..+ +.++.+|+.+.
T Consensus 3 ~k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~~~-----------~~~~~~Dv~~~~~~~~~~~ 66 (273)
T PRK06182 3 KKVALVTGASSG-IGKATARRLAAQGYTVYGAARRVDKMEDLA----SLG-----------VHPLSLDVTDEASIKAAVD 66 (273)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hCC-----------CeEEEeeCCCHHHHHHHHH
Confidence 467888886443 44444 455999999998876554322 111 16778887664
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+.....
T Consensus 67 ~~~~~~~~id~li~~ag~~~ 86 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYGS 86 (273)
T ss_pred HHHHhcCCCCEEEECCCcCC
Confidence 257899998876543
No 434
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.43 E-value=14 Score=32.11 Aligned_cols=74 Identities=12% Similarity=-0.052 Sum_probs=45.4
Q ss_pred CCCeEEEECCCcccc---hHHHHhcC-CEEEEEeCCHHH-HHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQG-AIVSASDISAAM-VAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~-~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.+.+||-.||+.|.- +..++++| ++|+.++-+++. ++...+.....+.. ++.++..|+.+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~--------~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS--------SVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC--------ceEEEEecCCChHHHHHH
Confidence 467899999865542 33344554 899999887663 55544444432211 127788887653
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|+++.+...
T Consensus 79 ~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHhcCCCCEEEEeeec
Confidence 2579988865544
No 435
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.37 E-value=17 Score=31.10 Aligned_cols=72 Identities=24% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+ +|..+..+ +++|++|+.++.+++.++...+.....+.. +.++.+|+.+.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 75 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGR---------AHAIAADLADPASVQRFF 75 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHH
Confidence 3577887775 44444444 445999999998887666555444332211 27788888764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 76 ~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 76 DAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 1578999977654
No 436
>PRK07831 short chain dehydrogenase; Provisional
Probab=76.13 E-value=26 Score=30.37 Aligned_cols=75 Identities=28% Similarity=0.223 Sum_probs=48.1
Q ss_pred CCCeEEEECCC---cccc-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCG---TGSL-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG---~G~~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+. .|.. ...|+++|++|+.+|.++..++...+...+.....+ +.++..|+.+.
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGR-------VEAVVCDVTSEAQVDALI 88 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCce-------EEEEEccCCCHHHHHHHH
Confidence 35788888863 3332 444556699999999888777666555543111011 26777887653
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 89 ~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 89 DAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 2678999988765
No 437
>PRK08226 short chain dehydrogenase; Provisional
Probab=76.10 E-value=19 Score=31.22 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|+..|. ++..|+++|++|+.++-++...+...+. ...+. + +.++..|+.+.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~~~--~-------~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGRGH--R-------CTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHhCC--c-------eEEEECCCCCHHHHHHHHH
Confidence 35788877775433 2334445699999999887543333222 22111 1 26778888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+....
T Consensus 75 ~~~~~~~~id~vi~~ag~~ 93 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGVC 93 (263)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25789999877653
No 438
>PTZ00357 methyltransferase; Provisional
Probab=76.06 E-value=7.6 Score=38.94 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=56.2
Q ss_pred CeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHh-HHhhhccCCCCCCCCCceEEcccccCC-----
Q 020710 150 IAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKA-EEELLADNGGEAPVMPKFEVKDLESLD----- 217 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 217 (322)
..|+-+|+|-|-+.....+. + .+|++||-++..+.....+. ....+.+.....-..++++..|+....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999987655443 3 47999999966443443332 223332210000011378888876651
Q ss_pred ---------CCccEEEEcccccccCcchH-HHHHHHHHhcc
Q 020710 218 ---------GKYDTVVCLDVLIHYPQSKA-DGMIAHLASLA 248 (322)
Q Consensus 218 ---------~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~ 248 (322)
+++|+||+ +.|-.+-|.|+ .++|.-+.+.+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfL 821 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQL 821 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhh
Confidence 36999885 44455555443 45555554443
No 439
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.06 E-value=25 Score=30.81 Aligned_cols=74 Identities=23% Similarity=0.192 Sum_probs=44.8
Q ss_pred CCCeEEEECCCccc--c-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS--L-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~--~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. . +..|+++|++|++++-++...+...+.........+ +.++..|+.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGA-------VRYEPADVTDEDQVARAVD 78 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCc-------eEEEEcCCCCHHHHHHHHH
Confidence 36789988865332 2 233445699999999887665544443332211111 26777887654
Q ss_pred -----CCCccEEEEccc
Q 020710 217 -----DGKYDTVVCLDV 228 (322)
Q Consensus 217 -----~~~fD~V~~~~~ 228 (322)
.+..|.|+.+..
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 79 AATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 247899998764
No 440
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.04 E-value=9 Score=32.11 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCCeEEEECCC-cccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 148 KGIAVCDAGCG-TGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 148 ~~~~VLDvGcG-~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
++.+||-+|.= +|.+...+..+.++|+.+|+.|.|-.... + .++|... ...+.|.+|+|+-.
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp---------~-------~v~Fr~~-~~~~~G~~DlivDl 106 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLP---------N-------NVKFRNL-LKFIRGEVDLIVDL 106 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCC---------C-------CccHhhh-cCCCCCceeEEEec
Confidence 57789999875 78887777777899999999998743221 1 1245444 33347889999998
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
..|-.+.+ ++|+. ..++.++.-.|.
T Consensus 107 TGlGG~~P----e~L~~----fnp~vfiVEdP~ 131 (254)
T COG4017 107 TGLGGIEP----EFLAK----FNPKVFIVEDPK 131 (254)
T ss_pred cccCCCCH----HHHhc----cCCceEEEECCC
Confidence 88887766 33332 355666555443
No 441
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=75.67 E-value=9.8 Score=34.11 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=38.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
.+.+|.-+|+|.-....+|.....+|.+||+++..++.-+-+...
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence 578999999998878888888889999999999999877665543
No 442
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=75.57 E-value=19 Score=30.93 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=44.3
Q ss_pred CeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 150 IAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++||=.| |+|..+..++ ++|.+|++++.++...+...+.....+. + +.++.+|+.+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~-------~~~~~~D~~~~~~~~~~~~~ 71 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--S-------VIYLVADVTKEDEIADMIAA 71 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--c-------eEEEECCCCCHHHHHHHHHH
Confidence 3566666 4455555444 4589999999987766555444332221 1 26777887653
Q ss_pred ----CCCccEEEEcccccc
Q 020710 217 ----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~ 231 (322)
.+..|.|+++....+
T Consensus 72 ~~~~~~~~d~vi~~a~~~~ 90 (255)
T TIGR01963 72 AAAEFGGLDILVNNAGIQH 90 (255)
T ss_pred HHHhcCCCCEEEECCCCCC
Confidence 256899998775433
No 443
>PRK08703 short chain dehydrogenase; Provisional
Probab=74.94 E-value=21 Score=30.44 Aligned_cols=73 Identities=21% Similarity=0.129 Sum_probs=43.8
Q ss_pred CCCeEEEECCCcccchH----HHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAI----PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~----~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
++++||-.||+. .++. .|+++|.+|++++-++...+...+.+...+... +.+...|+.+.
T Consensus 5 ~~k~vlItG~sg-giG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~--------~~~~~~D~~~~~~~~~~~ 75 (239)
T PRK08703 5 SDKTILVTGASQ-GLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPE--------PFAIRFDLMSAEEKEFEQ 75 (239)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCC--------cceEEeeecccchHHHHH
Confidence 457899999644 4443 344559999999998876655544443322110 14555555321
Q ss_pred ---------CCCccEEEEcccc
Q 020710 217 ---------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ---------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 76 ~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 76 FAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHHHHHhCCCCCEEEEeccc
Confidence 1678999877654
No 444
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=74.90 E-value=17 Score=32.89 Aligned_cols=73 Identities=23% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||-.|+..|. .+..|++.|++|+.++-+..-.+.+.+.....+ . .+.++..|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~-------~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP--D-------SYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC--C-------ceEEEEecCCCHHHHHHHHH
Confidence 46678888875443 234455569999999988766555444332111 1 126778888664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 76 ~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 76 DFRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHHhCCCccEEEECCcc
Confidence 2468999988764
No 445
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.79 E-value=12 Score=29.87 Aligned_cols=72 Identities=24% Similarity=0.214 Sum_probs=47.3
Q ss_pred eEEEECCCccc---chHHHHhcCC-EEEEEeCC--HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 151 AVCDAGCGTGS---LAIPLAKQGA-IVSASDIS--AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~---~~~~la~~~~-~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++|=.|++.|. ++..|+++|. .|+.+.-+ .+..+...+.+...+.. +.+...|+.+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAK---------ITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSE---------EEEEESETTSHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccc---------ccccccccccccccccccc
Confidence 56777877654 3455566655 67888888 56666555555544422 27888887664
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++++.....
T Consensus 73 ~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 73 EVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccccc
Confidence 478999998766544
No 446
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.73 E-value=44 Score=33.15 Aligned_cols=81 Identities=21% Similarity=0.106 Sum_probs=46.0
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~ 217 (322)
.+.+||-.|+. |..+..+ ++.|++|++++.+...++...+.+....+...-.....++.++.+|+.+. -
T Consensus 79 ~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 45677777763 4444444 45599999999887766544333322111000000001137888898764 3
Q ss_pred CCccEEEEcccc
Q 020710 218 GKYDTVVCLDVL 229 (322)
Q Consensus 218 ~~fD~V~~~~~l 229 (322)
+..|+||++...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 678999987654
No 447
>PRK07074 short chain dehydrogenase; Provisional
Probab=74.64 E-value=16 Score=31.56 Aligned_cols=71 Identities=24% Similarity=0.140 Sum_probs=44.6
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. ++..|+++|++|++++.++.-.+...+.... .+ +.++..|+.+.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----~~-------~~~~~~D~~~~~~~~~~~~~ 70 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----AR-------FVPVACDLTDAASLAAALAN 70 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----Cc-------eEEEEecCCCHHHHHHHHHH
Confidence 3467878876543 2344556699999999887655444333211 11 26778887664
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
.+.+|.|+.+....
T Consensus 71 ~~~~~~~~d~vi~~ag~~ 88 (257)
T PRK07074 71 AAAERGPVDVLVANAGAA 88 (257)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 14689999887653
No 448
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=74.35 E-value=16 Score=29.66 Aligned_cols=126 Identities=20% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCcccchHHHHh----cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCccEEEEc
Q 020710 157 CGTGSLAIPLAK----QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKYDTVVCL 226 (322)
Q Consensus 157 cG~G~~~~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~fD~V~~~ 226 (322)
.|+|..+..+++ .+.+|+++--++.-++. ..+ ++++.+|+.+. -..+|.|++.
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~------~~~-----------~~~~~~d~~d~~~~~~al~~~d~vi~~ 67 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED------SPG-----------VEIIQGDLFDPDSVKAALKGADAVIHA 67 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH------CTT-----------EEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhccc------ccc-----------cccceeeehhhhhhhhhhhhcchhhhh
Confidence 356666665554 48999999888764333 111 28889998776 2579999987
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
..-..-..+....+++.+.+...+..++.-.. ..+.. ...............+.......++.+++.|++.+-
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 140 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA-GVYRD---PPGLFSDEDKPIFPEYARDKREAEEALRESGLNWTI 140 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET-TGTTT---CTSEEEGGTCGGGHHHHHHHHHHHHHHHHSTSEEEE
T ss_pred hhhhcccccccccccccccccccccceeeecc-ccCCC---CCcccccccccchhhhHHHHHHHHHHHHhcCCCEEE
Confidence 64322212223455555555433344432211 11110 000000000111123344566778889999987544
No 449
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=74.22 E-value=28 Score=32.30 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHhhhc--CCCCCCeEEEECCCcccchHHHHhcCC------EEEEEeCCHHHHHHHHHHhH
Q 020710 136 NTMQMLNDE--GSLKGIAVCDAGCGTGSLAIPLAKQGA------IVSASDISAAMVAEARKKAE 191 (322)
Q Consensus 136 ~~~~~l~~~--~~~~~~~VLDvGcG~G~~~~~la~~~~------~v~gvD~s~~~l~~a~~~~~ 191 (322)
+..++++.. +..++.+|||..+..|.=+..|.+..+ .|++-|.++.-+....+...
T Consensus 141 eavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 141 EAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred hhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh
Confidence 344444332 246889999999999999988887733 79999999988888877773
No 450
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.81 E-value=22 Score=30.24 Aligned_cols=71 Identities=24% Similarity=0.189 Sum_probs=44.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||-.|++.|. ....+++.|++|++++-+++-.+...+.....+ + +.++.+|+.+.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~-------~~~~~~Dl~~~~~~~~~~~ 73 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---N-------IHYVVGDVSSTESARNVIE 73 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---C-------eEEEECCCCCHHHHHHHHH
Confidence 36789999986433 233344559999999998876655544333221 1 26778887653
Q ss_pred -----CCCccEEEEccc
Q 020710 217 -----DGKYDTVVCLDV 228 (322)
Q Consensus 217 -----~~~fD~V~~~~~ 228 (322)
-+..|.++.+..
T Consensus 74 ~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 74 KAAKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHHHhCCCCEEEEcCC
Confidence 145788887664
No 451
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=73.66 E-value=6.8 Score=34.63 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHhhhcCC-CCCCeEEEECCCcccchHHHHhc-------CCEEEEEeCCH
Q 020710 136 NTMQMLNDEGS-LKGIAVCDAGCGTGSLAIPLAKQ-------GAIVSASDISA 180 (322)
Q Consensus 136 ~~~~~l~~~~~-~~~~~VLDvGcG~G~~~~~la~~-------~~~v~gvD~s~ 180 (322)
.++..+...+. .+...++|+|||.|.++.+++.. ...++.||-..
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45556655543 35678999999999999999875 24688999754
No 452
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.48 E-value=24 Score=31.00 Aligned_cols=74 Identities=22% Similarity=0.176 Sum_probs=45.3
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.++|-.|++.|. +...|+++|++|++++-+++-++...+.....+...+ +.++.+|+.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~d~~~~~~~~~~ 75 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQN-------IKVQQLDVTDQNSIHNFQLV 75 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCc-------eeEEecCCCCHHHHHHHHHH
Confidence 4568888865443 2233456699999999887666555444333222122 27778887664
Q ss_pred ---CCCccEEEEcccc
Q 020710 217 ---DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ---~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 76 ~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 76 LKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHhcCCeeEEEECCcc
Confidence 1567988877654
No 453
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=73.32 E-value=22 Score=30.80 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=43.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.||..|. .+..|++.|++|+++|.+.. +...+.....+.. +.++..|+.+.
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRR---------FLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHH
Confidence 46788888876544 33445556999999987642 1222222222211 15677787653
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 78 ~~~~~~~~~D~li~~Ag~~ 96 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGLI 96 (253)
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 25789999776543
No 454
>PRK05855 short chain dehydrogenase; Validated
Probab=73.31 E-value=19 Score=35.21 Aligned_cols=75 Identities=27% Similarity=0.248 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+.++|=+|+..|. ++..|++.|++|+.++.+...++...+.....+.. +.++..|+.+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAV---------AHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEEcCCCCHHHHHHHHH
Confidence 34568877764433 23445556999999999887666555544433322 26778888764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+.+
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGM 404 (582)
T ss_pred HHHHhcCCCcEEEECCccCC
Confidence 257899998876643
No 455
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=73.18 E-value=22 Score=30.43 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. .+..|+++|++|+.++-++. +...+.....+. + +.++..|+.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~--~-------~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGR--R-------FLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCC--c-------eEEEECCCCCHHHHHHHHH
Confidence 46789999986553 34445566999999987642 222333322221 1 26777887664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+....
T Consensus 73 ~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 73 SAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25789999876553
No 456
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.81 E-value=52 Score=29.87 Aligned_cols=44 Identities=25% Similarity=0.112 Sum_probs=32.1
Q ss_pred CCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=.|+| .|..+..+++. |++|+++|.+++-++.+++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 4567899999975 44455556655 88999999998877766553
No 457
>PRK06138 short chain dehydrogenase; Provisional
Probab=72.32 E-value=24 Score=30.25 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=45.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.||..|. +...|++.|++|+.++-+.+..+...+... .+ .+ +.++.+|+.+.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~-------~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GR-------AFARQGDVGSAEAVEALVD 73 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--Ce-------EEEEEcCCCCHHHHHHHHH
Confidence 36688888885333 223345569999999988765554433332 11 11 26778888664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 74 ~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 74 FVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
No 458
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=72.31 E-value=5.5 Score=35.99 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCeEEEECCCcccchHHHHhc--------------C--------CEEEEEeCCH--HHHHHHHHHhHHhhhcc-------
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--------------G--------AIVSASDISA--AMVAEARKKAEEELLAD------- 197 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--------------~--------~~v~gvD~s~--~~l~~a~~~~~~~~~~~------- 197 (322)
..+||-||.|.|.-...++.. + ..++.|||.+ ..|+.....+.......
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 369999999998766555421 1 4799999863 56665555443320000
Q ss_pred --CCCCCCCCCceEEcccccC----------CCCccEEEEcccccccC---cchHHHHHHHHHhccCCeEEEEE
Q 020710 198 --NGGEAPVMPKFEVKDLESL----------DGKYDTVVCLDVLIHYP---QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 198 --~~~~~~~~~~~~~~d~~~~----------~~~fD~V~~~~~l~~~~---~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.......++.|.+.|+..+ ....|+|+..+++.-+= ..+--++|.++-...++|-++.+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 0011223458899998765 12478888776664321 12245788888887766655443
No 459
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=72.27 E-value=21 Score=33.85 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=27.2
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMV 183 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l 183 (322)
..+.+|+=+|+|. |......++. |++|+++|.++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 4688999999995 4444444443 89999999988643
No 460
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=72.24 E-value=30 Score=31.36 Aligned_cols=120 Identities=27% Similarity=0.321 Sum_probs=60.2
Q ss_pred CCCCeEEEECCCc-ccch-HHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE-cccccCCCCccE
Q 020710 147 LKGIAVCDAGCGT-GSLA-IPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV-KDLESLDGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~-~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~fD~ 222 (322)
.++.+|+-+|+|. |... ..+...| .+|+.+|.+++..+...+.+ +. .... .|..+.-..+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---g~-----------~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---GG-----------NAVPLDELLELLNEADV 241 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---CC-----------eEEeHHHHHHHHhcCCE
Confidence 3578999999973 3332 2233334 57999999876543322222 11 1111 122222345899
Q ss_pred EEEcccccccCcchHHHHHHHHHh-c-cCCeEEEEEC-CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLAS-L-AEKRLILSFA-PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~-~-~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
|++.-.-.+. ...+..+.. . .++.+++.+. |...- ..+.+ ....++++.++++++.++
T Consensus 242 Vi~at~~~~~-----~~~~~~~~~~~~~~~~~viDlavPrdi~----~~v~~-------l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 242 VISATGAPHY-----AKIVERAMKKRSGKPRLIVDLAVPRDIE----PEVGE-------LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred EEECCCCCch-----HHHHHHHHhhCCCCCeEEEEeCCCCCCc----hhhcc-------CCCcEEEEHHHhHHHHHH
Confidence 9987654443 133333222 2 2345566654 22221 11111 112335678888887764
No 461
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.22 E-value=25 Score=31.36 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCH-HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISA-AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|-.|++.|. ++..|+++|++|+.++.++ ...+.........+.. +.++..|+.+.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVK---------CLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCe---------EEEEEccCCCHHHHHHHH
Confidence 46788888876544 3444556699999988764 2333333333322211 16778887653
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|+|+.+...
T Consensus 116 ~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 116 EETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHHcCCCCEEEECCcc
Confidence 2578999876554
No 462
>PRK06849 hypothetical protein; Provisional
Probab=72.11 E-value=70 Score=29.88 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=28.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHH
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVA 184 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~ 184 (322)
.+++||=+|++.+. .++.+.+.|.+|+++|.++..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~ 42 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS 42 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 36789999999863 56666677999999999875543
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=72.05 E-value=18 Score=31.50 Aligned_cols=70 Identities=26% Similarity=0.226 Sum_probs=44.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.. + .+ +.++.+|+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~-------~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ER-------ARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--Ce-------eEEEEecCCCHHHHHHHHH
Confidence 35688888865443 33445566999999999876544433322 1 11 26778888664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 73 ~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 73 TVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2578999987654
No 464
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=72.04 E-value=14 Score=25.92 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhhhcCC-CCCCeEEEECCCcccchH-HHHh---cCCEEEEEeCC
Q 020710 131 SKTVENTMQMLNDEGS-LKGIAVCDAGCGTGSLAI-PLAK---QGAIVSASDIS 179 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~-~~~~~VLDvGcG~G~~~~-~la~---~~~~v~gvD~s 179 (322)
++.+++-+++++..+. .-+++||-+||.+|+-+. .++. .|++.+||-+.
T Consensus 20 ~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 20 ARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3455666666665432 234799999999998532 2322 26778888653
No 465
>PRK05717 oxidoreductase; Validated
Probab=72.00 E-value=19 Score=31.20 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=44.5
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++||-.|++.|. ++..|+++|++|+.+|.++...+...+.. + .+ +.++.+|+.+.
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---~--~~-------~~~~~~Dl~~~~~~~~~~ 75 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---G--EN-------AWFIAMDVADEAQVAAGV 75 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---C--Cc-------eEEEEccCCCHHHHHHHH
Confidence 356788877765333 23445556999999998865443322211 1 11 26788887764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+....
T Consensus 76 ~~~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIA 95 (255)
T ss_pred HHHHHHhCCCCEEEECCCcc
Confidence 25689999877654
No 466
>PRK12743 oxidoreductase; Provisional
Probab=71.60 E-value=27 Score=30.23 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCeEEEECCCcccchHH----HHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 149 GIAVCDAGCGTGSLAIP----LAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++||=.|++.| ++.. |+++|++|+.++- +....+...+.....+.. +.++..|+.+.
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 71 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVR---------AEIRQLDLSDLPEGAQAL 71 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCc---------eEEEEccCCCHHHHHHHH
Confidence 357888887544 4444 4455999887753 444444444444333221 26778887764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.++.|.|+++...
T Consensus 72 ~~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 72 DKLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 2678999987654
No 467
>PRK08324 short chain dehydrogenase; Validated
Probab=71.59 E-value=45 Score=33.90 Aligned_cols=72 Identities=24% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ++..|++.|++|+.+|.++..++.+.+.+... .+ +.++..|+.+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~-------v~~v~~Dvtd~~~v~~~~~ 490 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DR-------ALGVACDVTDEAAVQAAFE 490 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---Cc-------EEEEEecCCCHHHHHHHHH
Confidence 46788988874442 23344556999999999987766554443321 11 26777787653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+|+.+...
T Consensus 491 ~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 491 EAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987764
No 468
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=71.58 E-value=26 Score=30.08 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=43.1
Q ss_pred eEEEECCCcccchH----HHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----------
Q 020710 151 AVCDAGCGTGSLAI----PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~~~~----~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------- 216 (322)
++|=.|+. |..+. .|++.|++|+.++-++..++...+.....+.. +.++.+|+.+.
T Consensus 2 ~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 2 VALVTGGA-QGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGK---------AVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEEcCCCCHHHHHHHHHHH
Confidence 46667754 44444 34556999999998876665554444433222 26778887654
Q ss_pred ---CCCccEEEEcccc
Q 020710 217 ---DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ---~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHcCCCCEEEECCCc
Confidence 2467999877654
No 469
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.47 E-value=18 Score=34.43 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCCeEEEECCCc-ccchHHHH-hcCCEEEEEeCCHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLA-KQGAIVSASDISAAMVA 184 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la-~~~~~v~gvD~s~~~l~ 184 (322)
..+.+|+=+|+|. |......+ ..|++|+.+|+++....
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~ 249 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICAL 249 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhH
Confidence 3688999999984 33322223 33899999999986543
No 470
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.38 E-value=25 Score=31.63 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCH-HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISA-AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|++.|. ++..|+++|++|+.+|.+. ..++...+.+...+.. +.++.+|+.+.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~---------~~~~~~Dv~d~~~~~~~~ 81 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAK---------AVAVAGDISQRATADELV 81 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCe---------EEEEeCCCCCHHHHHHHH
Confidence 46789988887655 3455666799999998753 3333333333322211 16777887653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 82 ~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 82 ATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2578999987654
No 471
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.22 E-value=28 Score=30.55 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=52.3
Q ss_pred CeEEEECCCc--ccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
.+|.=||||. +.++..+.+.+ .+|+.+|.+++..+.+.+.. +. . ...+..+.....|+|+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~---g~-----------~-~~~~~~~~~~~advVi 67 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY---GV-----------R-AATDNQEAAQEADVVV 67 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc---CC-----------e-ecCChHHHHhcCCEEE
Confidence 4678899985 34555566666 67999999887655444322 11 1 1122222234578888
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
. -.++..+..+++.+...+ +..++++....
T Consensus 68 l-----~v~~~~~~~v~~~l~~~~-~~~vvs~~~gi 97 (267)
T PRK11880 68 L-----AVKPQVMEEVLSELKGQL-DKLVVSIAAGV 97 (267)
T ss_pred E-----EcCHHHHHHHHHHHHhhc-CCEEEEecCCC
Confidence 5 334544667777776544 45666665443
No 472
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=71.21 E-value=33 Score=32.66 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCCeEEEECCCc-ccchH-HHHhcCC-EEEEEeCCHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAI-PLAKQGA-IVSASDISAAMVA 184 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~-~la~~~~-~v~gvD~s~~~l~ 184 (322)
.++.+|+-+|||. |.... .+...|. +|+.++.++...+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 3578999999973 33332 2334476 7999999876543
No 473
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.00 E-value=34 Score=31.22 Aligned_cols=80 Identities=23% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+..++=-|+-.|. .++.|+.+|++|+-..-+.+..+.+.+.+....... .+.+++.|+.++
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~-------~i~~~~lDLssl~SV~~fa~ 106 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQ-------KIRVIQLDLSSLKSVRKFAE 106 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCC-------ceEEEECCCCCHHHHHHHHH
Confidence 35567777766654 355667779999888888877777777776633222 237899999876
Q ss_pred -----CCCccEEEEcccccccCc
Q 020710 217 -----DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~~~~ 234 (322)
....|+.+++..+...+.
T Consensus 107 ~~~~~~~~ldvLInNAGV~~~~~ 129 (314)
T KOG1208|consen 107 EFKKKEGPLDVLINNAGVMAPPF 129 (314)
T ss_pred HHHhcCCCccEEEeCcccccCCc
Confidence 578999998877655543
No 474
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=70.69 E-value=5 Score=34.27 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhH
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAE 191 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~ 191 (322)
.+++.+++++... ++...+|.--|.|..+..+.++ ..+++++|-+|-+-+.|+....
T Consensus 30 Vm~devl~~lspv---~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 30 VMLDEVLDILSPV---RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred eehhhHHHHcCCC---CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 4668888888865 7889999999999999999888 4568899999988888776553
No 475
>PRK07832 short chain dehydrogenase; Provisional
Probab=70.57 E-value=73 Score=27.80 Aligned_cols=72 Identities=24% Similarity=0.246 Sum_probs=42.6
Q ss_pred eEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 151 AVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
++|=.|++.|. ....|+++|++|+.++.+++.++...+.+...+... +.+...|+.+.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~--------~~~~~~D~~~~~~~~~~~~~~~ 73 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV--------PEHRALDISDYDAVAAFAADIH 73 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCc--------ceEEEeeCCCHHHHHHHHHHHH
Confidence 45666664433 233455569999999988876665544443322110 14466777553
Q ss_pred --CCCccEEEEccccc
Q 020710 217 --DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 --~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+....
T Consensus 74 ~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 74 AAHGSMDVVMNIAGIS 89 (272)
T ss_pred HhcCCCCEEEECCCCC
Confidence 25689999877543
No 476
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=70.39 E-value=3.7 Score=36.83 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
.+.||+|+......|+-.++ +..++.++.++++....+.-++-+.-...+ .+.+.+++++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-------l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F-------------~~kv~eLA~~ 279 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-------LFQALAPDAVLVVETAKFMVDLRKEQLQEF-------------VKKVKELAKA 279 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-------HHHHhCCCCEEEEEcchhheeCCHHHHHHH-------------HHHHHHHHHH
Confidence 58899999877666654433 333345556555544322222212211111 4678899999
Q ss_pred CCCEEEE
Q 020710 297 VGWKIRK 303 (322)
Q Consensus 297 aGf~vv~ 303 (322)
+||+.+.
T Consensus 280 aG~~p~~ 286 (289)
T PF14740_consen 280 AGFKPVT 286 (289)
T ss_pred CCCcccc
Confidence 9998754
No 477
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=70.16 E-value=24 Score=29.02 Aligned_cols=64 Identities=27% Similarity=0.158 Sum_probs=37.5
Q ss_pred CCCeEEEECCCc-ccchHHHHh-cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
.+.+|.=||+|. |......++ .|++|++.|.+...... .... .+...+++++-...|+|+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~----~~~~-------------~~~~~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG----ADEF-------------GVEYVSLDELLAQADIVSL 97 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH----HHHT-------------TEEESSHHHHHHH-SEEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh----cccc-------------cceeeehhhhcchhhhhhh
Confidence 578999998873 333222222 39999999999875441 1111 3444466665566899996
Q ss_pred ccc
Q 020710 226 LDV 228 (322)
Q Consensus 226 ~~~ 228 (322)
..-
T Consensus 98 ~~p 100 (178)
T PF02826_consen 98 HLP 100 (178)
T ss_dssp -SS
T ss_pred hhc
Confidence 443
No 478
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.98 E-value=15 Score=31.57 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=26.1
Q ss_pred CCCeEEEECCCcccchHHHHhc----CCEEEEEeCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDIS 179 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s 179 (322)
....||-.||..|..+..|++. |+.|+++--+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 4678999999999988877754 9999887644
No 479
>PRK08278 short chain dehydrogenase; Provisional
Probab=69.85 E-value=26 Score=30.81 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=44.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHH-------HHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAM-------VAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~-------l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 216 (322)
+++++|=.||+.|. ++..|+++|++|+.++.+... ++...+.....+.. +.++.+|+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~D~~~~~ 75 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQ---------ALPLVGDVRDED 75 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCc---------eEEEEecCCCHH
Confidence 35688888886553 334455669999999876531 22222333222211 26777887664
Q ss_pred ------------CCCccEEEEccccc
Q 020710 217 ------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------------~~~fD~V~~~~~l~ 230 (322)
-+..|.|+.+....
T Consensus 76 ~i~~~~~~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 76 QVAAAVAKAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCc
Confidence 25799999876653
No 480
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=69.81 E-value=20 Score=32.95 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=52.4
Q ss_pred CCCeEEEECCCcc--cchHHHHhcCCEEEEEeCCH-HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 148 KGIAVCDAGCGTG--SLAIPLAKQGAIVSASDISA-AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
++.+|.=||+|.- .++..|...|.+|+..+... ...+.+ ...+ +...|..+.....|+|+
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----~~~G-------------~~~~s~~eaa~~ADVVv 78 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----EADG-------------FEVLTVAEAAKWADVIM 78 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----HHCC-------------CeeCCHHHHHhcCCEEE
Confidence 4678999999863 34455556688887766543 222222 2222 22335444445679998
Q ss_pred EcccccccCcchHHHHH-HHHHhccCCeEEEEECCC
Q 020710 225 CLDVLIHYPQSKADGMI-AHLASLAEKRLILSFAPK 259 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l-~~l~~~~~~~~il~~~~~ 259 (322)
. ++|+.....++ +.+...++++-++++.+.
T Consensus 79 L-----aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G 109 (330)
T PRK05479 79 I-----LLPDEVQAEVYEEEIEPNLKEGAALAFAHG 109 (330)
T ss_pred E-----cCCHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 5 66765556666 667665665655565543
No 481
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=69.55 E-value=30 Score=29.65 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
++++||=.|+. |.++.. |++.|++|+++|.++..++...+.+...+.. ++.++..|+...
T Consensus 11 ~~k~vlItG~~-g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~--------~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAG-DGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP--------QPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC--------CceEEEecccCCCHHHHHH
Confidence 46789988864 444443 4455899999999987665554444332211 125666666321
Q ss_pred --------CCCccEEEEcccc
Q 020710 217 --------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --------~~~fD~V~~~~~l 229 (322)
.++.|.|+.+...
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcc
Confidence 2578999987643
No 482
>PRK06180 short chain dehydrogenase; Provisional
Probab=69.44 E-value=23 Score=31.18 Aligned_cols=71 Identities=21% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+++||=.||+.|. +...|+++|++|++++-++..++...+.. + .+ +.++..|+.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~---~--~~-------~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH---P--DR-------ALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc---C--CC-------eeEEEccCCCHHHHHHHHHH
Confidence 4678888886543 23445556999999999887654433221 1 11 15677787654
Q ss_pred ----CCCccEEEEcccccc
Q 020710 217 ----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~ 231 (322)
-+..|.|+.+....+
T Consensus 72 ~~~~~~~~d~vv~~ag~~~ 90 (277)
T PRK06180 72 AEATFGPIDVLVNNAGYGH 90 (277)
T ss_pred HHHHhCCCCEEEECCCccC
Confidence 246899998776544
No 483
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.27 E-value=18 Score=34.50 Aligned_cols=71 Identities=27% Similarity=0.197 Sum_probs=43.8
Q ss_pred CCCeEEEECCCcccc--hHHHHhcCCEEEEEeCCH-HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 148 KGIAVCDAGCGTGSL--AIPLAKQGAIVSASDISA-AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~--~~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.+++|+=+|+|.... +..|++.|++|+++|.+. ..++...+.+...+. .+...|..+. .+.+|+|
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~d~v 72 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI-----------ELVLGEYPEEFLEGVDLV 72 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-----------EEEeCCcchhHhhcCCEE
Confidence 367899999887443 334456699999999975 333322223333221 5566665443 4679999
Q ss_pred EEcccc
Q 020710 224 VCLDVL 229 (322)
Q Consensus 224 ~~~~~l 229 (322)
+.+..+
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 987654
No 484
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=69.26 E-value=56 Score=26.20 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=50.0
Q ss_pred CCeEEEECCCcccchHHHHh-------cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCC------CCCCceEEcc-cc
Q 020710 149 GIAVCDAGCGTGSLAIPLAK-------QGAIVSASDISAAMVAEARKKAEEELLADNGGEA------PVMPKFEVKD-LE 214 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~------~~~~~~~~~d-~~ 214 (322)
..++||+-+|.|-.-..|-+ ++.++..+.+.....+...+.+............ -..+...+-- +.
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~ 84 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYG 84 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHH
Confidence 45899999999987665443 4788999999988888887777654322100000 0000111100 00
Q ss_pred c----C--CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 215 S----L--DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 215 ~----~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
. . -..||+|||-++ |+.|+.--.+...++.
T Consensus 85 ~~~~~p~~~~~yd~II~DEc--H~~Dp~sIA~rg~l~~ 120 (148)
T PF07652_consen 85 HFLLNPCRLKNYDVIIMDEC--HFTDPTSIAARGYLRE 120 (148)
T ss_dssp HHHHTSSCTTS-SEEEECTT--T--SHHHHHHHHHHHH
T ss_pred HHhcCcccccCccEEEEecc--ccCCHHHHhhheeHHH
Confidence 0 0 367999999994 8888764333344443
No 485
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=69.21 E-value=7.3 Score=32.51 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=23.2
Q ss_pred eEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHH
Q 020710 151 AVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEAR 187 (322)
Q Consensus 151 ~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~ 187 (322)
+|.=+|.|.=. ++..|++.|.+|+|+|++++-++..+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 46667666322 34555677999999999999887765
No 486
>PRK06114 short chain dehydrogenase; Provisional
Probab=69.19 E-value=36 Score=29.34 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=44.5
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHH-HHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAA-MVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
+++++|-.|++.| .+.. |++.|++|+.+|.++. .++...+.+...+.. +.++..|+.+.
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRR---------AIQIAADVTSKADLRAA 76 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHH
Confidence 3567887775544 4444 4455999999997643 334333333332211 16677887654
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
.++.|.++.+....+
T Consensus 77 ~~~~~~~~g~id~li~~ag~~~ 98 (254)
T PRK06114 77 VARTEAELGALTLAVNAAGIAN 98 (254)
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 267899998776543
No 487
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=69.10 E-value=51 Score=27.78 Aligned_cols=43 Identities=37% Similarity=0.466 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCc-cc-chHHHHhcCCEEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GS-LAIPLAKQGAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~ 189 (322)
..+++|+=+|+|. |. .+..|.+.|++|+++|.+++.++...+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 4678999999983 22 2333445599999999998776665543
No 488
>PLN02253 xanthoxin dehydrogenase
Probab=69.04 E-value=24 Score=30.96 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=44.7
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++. .++.. |++.|++|+.+|.++...+...+.... ..+ +.++..|+.+.
T Consensus 17 ~~k~~lItGas~-gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~Dl~d~~~~~~~~ 85 (280)
T PLN02253 17 LGKVALVTGGAT-GIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---EPN-------VCFFHCDVTVEDDVSRAV 85 (280)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCc-------eEEEEeecCCHHHHHHHH
Confidence 356788888654 43443 455699999999887655444333211 111 26788888764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 86 ~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 86 DFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHHHhCCCCEEEECCCc
Confidence 2578999987654
No 489
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.00 E-value=38 Score=29.41 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=43.7
Q ss_pred CCCeEEEECCC-cccchHH----HHhcCCEEEEEeCCH--HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCG-TGSLAIP----LAKQGAIVSASDISA--AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG-~G~~~~~----la~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
.++++|-.|+| ++.++.. |++.|++|+.++.+. +.++...+.... + +.++..|+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-----~-------~~~~~~Dv~~~~~i~ 73 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPE-----P-------APVLELDVTNEEHLA 73 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCC-----C-------CcEEeCCCCCHHHHH
Confidence 36789999984 3444444 445699999888653 333333222211 1 26777887664
Q ss_pred ---------CCCccEEEEccccc
Q 020710 217 ---------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ---------~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 74 ~~~~~~~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 74 SLADRVREHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHHHHHHHcCCCcEEEEccccc
Confidence 37899999877553
No 490
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=68.98 E-value=22 Score=31.77 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred eEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCc-eEEcccccCCCCccEEEEc
Q 020710 151 AVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPK-FEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 151 ~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~-~~~~d~~~~~~~fD~V~~~ 226 (322)
+|+=+|||.- .++..|++.|.+|+.+|.+++.++..++. +... .. .. ... ....|..+. ..+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~--~~-~~~~~~~~~~~~~-~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN----GLRLEDG--EI-TVPVLAADDPAEL-GPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CCcccCC--ce-eecccCCCChhHc-CCCCEEEEe
Confidence 5788998843 24555666689999999877766554432 2110 00 00 000 011122222 679999864
Q ss_pred ccccccCcchHHHHHHHHHhccCCe-EEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKR-LILSF 256 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~-~il~~ 256 (322)
-- ......+++.+...++++ .++.+
T Consensus 74 ~k-----~~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 74 VK-----AYQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cc-----cccHHHHHHHHhhhcCCCCEEEEe
Confidence 32 223567788887765544 44444
No 491
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=68.86 E-value=49 Score=31.12 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=43.9
Q ss_pred CeEEEECCCc-ccchH-HHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 150 IAVCDAGCGT-GSLAI-PLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 150 ~~VLDvGcG~-G~~~~-~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
.+||=||||. |+-.. .|++.+ .+|+..|-|.+.++.+...... + +++.+.|+.+. -..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~-------v~~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----K-------VEALQVDAADVDALVALIKDF 69 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----c-------ceeEEecccChHHHHHHHhcC
Confidence 5799999952 33322 234446 7899999998887777655432 1 27888888765 2556
Q ss_pred cEEEEcc
Q 020710 221 DTVVCLD 227 (322)
Q Consensus 221 D~V~~~~ 227 (322)
|+|+..-
T Consensus 70 d~VIn~~ 76 (389)
T COG1748 70 DLVINAA 76 (389)
T ss_pred CEEEEeC
Confidence 9998643
No 492
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=68.69 E-value=31 Score=31.91 Aligned_cols=43 Identities=35% Similarity=0.339 Sum_probs=31.7
Q ss_pred CCCCCeEEEECCC-cccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCG-TGSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvGcG-~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||=.|+| .|.++..+++. |+ +|+++|.+++.++.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3467788889876 35555666665 88 69999999988887754
No 493
>PRK07825 short chain dehydrogenase; Provisional
Probab=68.63 E-value=31 Score=30.12 Aligned_cols=68 Identities=25% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. +...|++.|++|+.++.+++.++...+... + +.++..|+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~-------~~~~~~D~~~~~~~~~~~~~ 71 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------L-------VVGGPLDVTDPASFAAFLDA 71 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------c-------ceEEEccCCCHHHHHHHHHH
Confidence 5678888876543 234455669999999988876654433221 1 16777887654
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 72 ~~~~~~~id~li~~ag~ 88 (273)
T PRK07825 72 VEADLGPIDVLVNNAGV 88 (273)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2678999987654
No 494
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=68.37 E-value=31 Score=29.80 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=43.6
Q ss_pred CCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|=.|++. .++.. |+++|++|+.+|.+...++...+.... + +.++..|+.+.
T Consensus 6 ~~~vlItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~-------~~~~~~D~~~~~~~~~~~~ 72 (257)
T PRK07067 6 GKVALLTGAAS-GIGEAVAERYLAEGARVVIADIKPARARLAALEIGP-----A-------AIAVSLDVTRQDSIDRIVA 72 (257)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCC-----c-------eEEEEccCCCHHHHHHHHH
Confidence 56788787544 43444 445699999999988766554433211 1 26778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+...
T Consensus 73 ~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 73 AAVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2578999887654
No 495
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.19 E-value=36 Score=29.82 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=44.6
Q ss_pred CCCeEEEECCCcc-c----chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTG-S----LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G-~----~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
+++++|=.|++.| . .+..|++.|++|+.++.+....+.+++.....+ + +.++..|+.+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~---~-------~~~~~~Dl~~~~~v~~~ 74 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---S-------DIVLPCDVAEDASIDAM 74 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccC---C-------ceEeecCCCCHHHHHHH
Confidence 3568888998642 3 456666779999888876432222322221111 1 15677888664
Q ss_pred -------CCCccEEEEccccc
Q 020710 217 -------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~ 230 (322)
-+++|+++.+..+.
T Consensus 75 ~~~~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 75 FAELGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHHHHhhcCCCCEEEECCccC
Confidence 26789999887653
No 496
>PLN02256 arogenate dehydrogenase
Probab=68.18 E-value=30 Score=31.33 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCCeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEE
Q 020710 148 KGIAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~ 224 (322)
...+|.=||+|. |.++..+.+.|.+|+++|.++. .+.+ ...+. .+ ..|..+. ....|+|+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv-----------~~-~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV-----------SF-FRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC-----------ee-eCCHHHHhhCCCCEEE
Confidence 467899999883 4455566666889999998863 1222 22221 11 2233322 24579988
Q ss_pred EcccccccCcchHHHHHHHH-Hhcc-CCeEEEEECC
Q 020710 225 CLDVLIHYPQSKADGMIAHL-ASLA-EKRLILSFAP 258 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l-~~~~-~~~~il~~~~ 258 (322)
. ..|......+++++ ...+ ++.+++++..
T Consensus 98 l-----avp~~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 98 L-----CTSILSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred E-----ecCHHHHHHHHHhhhhhccCCCCEEEecCC
Confidence 5 34444456777777 3333 3444555543
No 497
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=68.11 E-value=15 Score=31.56 Aligned_cols=57 Identities=26% Similarity=0.216 Sum_probs=38.9
Q ss_pred hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------------C-CCccEEEEccc
Q 020710 163 AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------------D-GKYDTVVCLDV 228 (322)
Q Consensus 163 ~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------~-~~fD~V~~~~~ 228 (322)
+..|++.|++|+.+|.+.+.++..-+.+.+... . +++..|+.+. . +..|+++.+-.
T Consensus 13 a~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-~---------~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~ 82 (241)
T PF13561_consen 13 ARALAEEGANVILTDRNEEKLADALEELAKEYG-A---------EVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAG 82 (241)
T ss_dssp HHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-S---------EEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEE
T ss_pred HHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-C---------ceEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccc
Confidence 455667799999999999986555444443222 1 5688888653 3 88998887544
Q ss_pred c
Q 020710 229 L 229 (322)
Q Consensus 229 l 229 (322)
.
T Consensus 83 ~ 83 (241)
T PF13561_consen 83 I 83 (241)
T ss_dssp S
T ss_pred c
Confidence 3
No 498
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=68.10 E-value=22 Score=32.16 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=51.6
Q ss_pred CeEEEECCC--cccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccC-CCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 150 IAVCDAGCG--TGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN-GGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 150 ~~VLDvGcG--~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
.+|+=+||| .|.++..|++.|..|+.++-+.+.++..++. .++... .+.. ........+. +..+.||+|+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~-~~~~~~~~~~-~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQA-SLYAIPAETA-DAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEeeCCcc-eeeccCCCCc-ccccccCEEEEE
Confidence 579999999 4556777777799999999987665554432 111100 0000 0000001111 123579999865
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
-=-++ ....++.+....++..++.
T Consensus 78 vK~~~-----~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 78 CKAYD-----AEPAVASLAHRLAPGAELL 101 (305)
T ss_pred CCHHh-----HHHHHHHHHhhCCCCCEEE
Confidence 32221 4467777777655544443
No 499
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.07 E-value=33 Score=32.63 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=40.7
Q ss_pred eEEEECCCcccchHHHHh----cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 151 AVCDAGCGTGSLAIPLAK----QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
+|+=+|| |..+..+++ .|.+|+.+|.+++.++.+++.. +. .++.+|..+. -..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~---~~-----------~~~~gd~~~~~~l~~~~~~~ 65 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL---DV-----------RTVVGNGSSPDVLREAGAED 65 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc---CE-----------EEEEeCCCCHHHHHHcCCCc
Confidence 5677777 566666654 4889999999998877665421 11 6677777553 357
Q ss_pred ccEEEEc
Q 020710 220 YDTVVCL 226 (322)
Q Consensus 220 fD~V~~~ 226 (322)
+|.|++.
T Consensus 66 a~~vi~~ 72 (453)
T PRK09496 66 ADLLIAV 72 (453)
T ss_pred CCEEEEe
Confidence 8888864
No 500
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=67.96 E-value=29 Score=35.23 Aligned_cols=76 Identities=20% Similarity=0.101 Sum_probs=48.0
Q ss_pred CCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|.- +..|+++|++|+++|.++..++...+.........+ +.++.+|+.+.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~-------~~~v~~Dvtd~~~v~~a~~ 485 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGR-------AVALKMDVTDEQAVKAAFA 485 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCc-------EEEEECCCCCHHHHHHHHH
Confidence 467788888764442 334455699999999998776655544432111111 15677887664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+|+.+..+.
T Consensus 486 ~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 486 DVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred HHHHhcCCCcEEEECCCCC
Confidence 25789998877653
Done!