BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020711
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
           Hedgehog N-Terminal Signalling Domain
          Length = 187

 Score = 31.2 bits (69), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 80  CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
           C   +VVG +R PP   R+ + + Y+   P + E+           +A S     +R+  
Sbjct: 13  CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65

Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLR 199
              + +  +   +  ++ A R+ +   R K++LN L + V+ +WP V   V E       
Sbjct: 66  LTPNYNPDIIFKDEKNTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGH 123

Query: 200 ANLMFFYFEG 209
            +    ++EG
Sbjct: 124 HSEESLHYEG 133


>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
           Signalling Domain
          Length = 187

 Score = 31.2 bits (69), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 80  CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
           C   +VVG +R PP   R+ + + Y+   P + E+           +A S     +R+  
Sbjct: 13  CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65

Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLR 199
              + +  +   +  ++ A R+ +   R K++LN L + V+ +WP V   V E       
Sbjct: 66  LTPNYNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGH 123

Query: 200 ANLMFFYFEG 209
            +    ++EG
Sbjct: 124 HSEESLHYEG 133


>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
           Hedgehog N- Terminal Signalling Domain
          Length = 187

 Score = 31.2 bits (69), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 80  CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
           C   +VVG +R PP   R+ + + Y+   P + E+           +A S     +R+  
Sbjct: 13  CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65

Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLR 199
              + +  +   +  ++ A R+ +   R K++LN L + V+ +WP V   V E       
Sbjct: 66  LTPNYNPDIIFKDEENTGAERLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGH 123

Query: 200 ANLMFFYFEG 209
            +    ++EG
Sbjct: 124 HSEESLHYEG 133


>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
           Hedgehog N- Terminal Signalling Domain
          Length = 187

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 80  CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNA 139
           C   +VVG +R PP   R+ + + Y+   P + E+           +A S     +R+  
Sbjct: 13  CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKE 65

Query: 140 AGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMV 186
              + +  +   +  ++ A R+ +   R K++LN L + V+ +WP V
Sbjct: 66  LTPNYNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGV 110


>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
 pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
 pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
 pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
 pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
 pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
 pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
          Length = 169

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 84  QVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSS 143
           +VVG +R PP   R+ + + Y+   P + E+           +A S     +R+     +
Sbjct: 8   RVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSS----ERFKELTPN 60

Query: 144 RDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLM 203
            +  +   +  ++ A R+ +   R K++LN L + V+ +WP V   V E        +  
Sbjct: 61  YNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEE 118

Query: 204 FFYFEG 209
             ++EG
Sbjct: 119 SLHYEG 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,587,167
Number of Sequences: 62578
Number of extensions: 322116
Number of successful extensions: 690
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)