BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020711
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/315 (68%), Positives = 244/315 (77%), Gaps = 8/315 (2%)
Query: 4 GETRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63
G RRFP AAQPEIMRAAEKD+QYASFI++ACRDAFR LFGTR+A+AYQ E KL+GQMLY
Sbjct: 21 GGIRRFPLAAQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLY 80
Query: 64 YVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRG 123
YVLTTGSGQQTLGEEYCDI QV GP L PTPARRALFI+YQTAVPYIAERIS+R A++
Sbjct: 81 YVLTTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRALFILYQTAVPYIAERISTRAATQA 140
Query: 124 IALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRV-YSAVSRLKEKLNGLRLYVIRR 182
+ ES DEF G S S I+ PSSS S VSRL ++L I+R
Sbjct: 141 VTFDES--DEF-----FGDSHIHSPRMIDLPSSSQVETSTSVVSRLNDRLMRSWHRAIQR 193
Query: 183 WPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVF 242
WP+VLP+ RE LQLVLRANLM FYFEG YYHISKR +G+RYVFIGK NQRPRYQILGVF
Sbjct: 194 WPVVLPVAREVLQLVLRANLMLFYFEGFYYHISKRASGVRYVFIGKQLNQRPRYQILGVF 253
Query: 243 LLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGW 302
LLIQLCI+AAEGLRRSNLSSI SS+ S+G Q S GRGLPVLNEEG+LI SE++KG W
Sbjct: 254 LLIQLCILAAEGLRRSNLSSITSSIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNW 313
Query: 303 VLDSTSTSEVCLKCT 317
++++E KCT
Sbjct: 314 STSDSTSTEAVGKCT 328
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 23/249 (9%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A+ PE++RAA+KDE Y + A A L G R + ++ E +L+ + Y+ LTT +G
Sbjct: 6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAG 65
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQS 131
QTLGEEY I +V Q P+ RR + + +PY+ +++ + E Q+
Sbjct: 66 YQTLGEEYVSIVRVDPSQTRVPSWLRRGVLVTLHAVLPYLLDKVLLPLEQ------ELQA 119
Query: 132 DEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR 191
D + GS + V V R L + + R VL R
Sbjct: 120 DPDSGRPSQGS--------LVPGGRGCSGVRRWVRRHTATLTEQQRRALLRAAFVL---R 168
Query: 192 EFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRPRYQILGVFLLIQL 247
+ L + + ++ +FY G++YH++KR GI Y+ + G+ R Y++LGV L+ L
Sbjct: 169 QGLACLQQLHVAWFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVVSLLHL 228
Query: 248 CIIAAEGLR 256
+ + GLR
Sbjct: 229 --VLSVGLR 235
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 29/246 (11%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A+ PE++RAA+KDE Y + A A L G R + ++ E +L+ + Y+ LTT +G
Sbjct: 6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAG 65
Query: 72 QQTLGEEYCDITQVVGPQRLP-PTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQ 130
QTLGEEY I Q V P R+ P+ RR + + +PY+ ++ + E Q
Sbjct: 66 YQTLGEEYVSIIQ-VDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQ------ELQ 118
Query: 131 SDEFDRYNAAGSSRDQSLETIESPSSSAPRV---YSAVSRLKEKLNGLRLYVIRRWPMVL 187
+D +G SL S A R ++A +++ LR +
Sbjct: 119 ADP-----DSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLR---------AV 164
Query: 188 PIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRPRYQILGVFL 243
++R+ L + R ++ +FY G++YH++KR GI Y+ + G+ R Y++LGV
Sbjct: 165 FVLRQGLACLQRLHVAWFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVIS 224
Query: 244 LIQLCI 249
L+ L +
Sbjct: 225 LLHLVL 230
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 63/226 (27%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A QP+I+R+++KDE Y D C + ++ G R + QSE+KL+ +YY+LTT G
Sbjct: 81 ADQPDILRSSQKDEYYKKLFEDQCFEMLTRITGPRFIMNRQSESKLLANTIYYLLTTMIG 140
Query: 72 QQTLGEEYCDITQVVGPQ-RLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQ 130
QTLGEEYC++ ++ +P P R L+ + A PY+ ++
Sbjct: 141 SQTLGEEYCNLRKIKDKTFSIPSIPDRIKLYFFHLLA-PYLIKK---------------- 183
Query: 131 SDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIV 190
S P+++ +LY+++ I
Sbjct: 184 --------------------------SLPKLFQRHP---------KLYILKE------IF 202
Query: 191 REFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRY 236
+F +L +L FYF G Y+ SKR + IRY+F K +RP+Y
Sbjct: 203 PKFERL----HLALFYFNGSYFEFSKRLSDIRYIFNRKIDQKRPKY 244
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A PE++RAA+KDE Y + A +A L G + + ++ E +L+ + Y+ LTT +G
Sbjct: 4 AGAPEVIRAAQKDEYYLGGLRSAAGEALHSLAGAKKWLEWRKEIELLSDIAYFGLTTIAG 63
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAER----ISSRVASRGIALA 127
QTLGEEY I QV Q+ P+ RRA + +PY+ ++ + + + G A
Sbjct: 64 YQTLGEEYVGIIQVDPSQQRVPSRLRRAALVALHAVLPYLLDKALLPLEQELQADGDAPR 123
Query: 128 ESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVL 187
SQ G SR + + + A + +++ L+ V
Sbjct: 124 ASQGSLLP----GGRSRSGARRWVR---------HHAATLTEQQRKALQRAVF------- 163
Query: 188 PIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYV 224
I+R+ + R ++ +FY G +YH++KR AGI Y+
Sbjct: 164 -ILRQGFACLHRLHVAWFYIHGTFYHLAKRLAGITYL 199
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 98/251 (39%), Gaps = 62/251 (24%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A P I+RA +KD + S +++ D + + G+ Y E + + LY LTT G
Sbjct: 8 ANAPAIVRANQKDSYFESRLHNQLLDVVKAIKGSHFVHKYPEELRTLATALYLCLTTLVG 67
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQS 131
+TLGEEY D+ V R P A R F+V PY
Sbjct: 68 SKTLGEEYVDLVYVSRDGRKIPKFASRFGFVVAYVLFPYAVR------------------ 109
Query: 132 DEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR 191
Q L+ +++ S ++ S VS + V
Sbjct: 110 --------------QLLQKLKAQQSRLAQLVSGVSYMN--------------------VM 135
Query: 192 EFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVF---IGKPTNQRPR--YQILGVFLLIQ 246
+ L L +L FYF G YY +KR G+RY F + K QR R Y++LG+ ++ Q
Sbjct: 136 DLLNL----HLALFYFTGKYYQFAKRLFGLRYAFGYRVDK-NQQRARGNYELLGLLIIFQ 190
Query: 247 LCIIAAEGLRR 257
LR+
Sbjct: 191 TVFKNVANLRK 201
>sp|Q05568|PEX10_YEAST Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1
Length = 337
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 132/332 (39%), Gaps = 85/332 (25%)
Query: 8 RFPPAAQPEIMRAAEKDEQYASF----IYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63
RFP A P I++A +KDEQ + + C+ QLF +Y E + ++LY
Sbjct: 19 RFPFADAPSIVQAHQKDEQIQGLLIMKVTELCKLIKSQLFVN----SYPKELSIFAKLLY 74
Query: 64 YVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTA---VPYIAERISSRVA 120
+ TTG +TLGEEY D+T R A R IV+ A PY ++ ++
Sbjct: 75 LLFTTGRRGRTLGEEYVDLTYT---NRKGTRLAGRLKMIVFAFAYPLCPYFITKLYKKIM 131
Query: 121 SRGIALAESQSDEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVI 180
++++ +E ES
Sbjct: 132 K--------------------NNKESKIEDTES--------------------------- 144
Query: 181 RRWPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRP-- 234
V + L +L ++ FYF+G +Y ISKR G+RYVF N R
Sbjct: 145 -----VAAFCKGLLDFILDVHMTLFYFKGAFYSISKRIFGMRYVFKHILSKNEANFREEG 199
Query: 235 --RYQILGVFLLIQLCIIAAEGLRRSNLSS-------IASSVHHTSLGFQQASTG---RG 282
+Y++LG LL Q ++ + S L S S+ +S+G Q+ S G
Sbjct: 200 SQKYKVLGYILLAQN-VMKWYPVLTSTLGSWIYGRKRTNDSITRSSVGLQERSEHESIEG 258
Query: 283 LPVLNEEGSLIPSESDKGGWVLDSTSTSEVCL 314
+P ++ + S+ ++ ++ +++ +CL
Sbjct: 259 IPKESQLTHINLSDKNQLPFIPEASRKCILCL 290
>sp|Q92265|PEX10_PICPA Peroxisome biogenesis factor 10 OS=Komagataella pastoris GN=PEX10
PE=1 SV=1
Length = 419
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 40/248 (16%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A P I+RA +KD + + + D ++ + G R + E + + LY LTT G
Sbjct: 26 ANAPAIVRANQKDSYFETVLRDKLQNVIQIFKGQRFTHTHPEEIGVAAKALYLSLTTLLG 85
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQS 131
+TLGEEY D+ V + P RA FI +PY R+ R+ S E
Sbjct: 86 TKTLGEEYVDLIYVSRDGKRIPRYLARAGFIFAYAILPYFLTRLFRRLKSSSTPKDEVTE 145
Query: 132 DEFDRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR 191
++ ++ E P S R+++ L+ +
Sbjct: 146 EKINK---------------ELPIS---------LRIEKYLSNMS-------------YS 168
Query: 192 EFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRP---RYQILGVFLLIQLC 248
+ L ++ ++ FYF G +Y+ISKR +RY F K +R Y++LG +++QL
Sbjct: 169 KVLDTIMNLHIAVFYFSGQFYNISKRFFSMRYAFGHKINKERTPNGNYELLGGLIVLQLV 228
Query: 249 IIAAEGLR 256
+ + G +
Sbjct: 229 MKSLGGFK 236
>sp|Q47RR3|DAPF_THEFY Diaminopimelate epimerase OS=Thermobifida fusca (strain YX) GN=dapF
PE=1 SV=1
Length = 274
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 44 GTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQR-LPPTPARRALFI 102
G RV Y E LVG + V T + + E +IT +GP R L P AR A
Sbjct: 88 GVRVFARYLQEAGLVGAAAFEVGTRAGARHVVLEPDGNITVDMGPVRILGPGSARLADGP 147
Query: 103 VYQTAV----PYIAERISSRVA 120
V+ T + P++A R++ VA
Sbjct: 148 VHGTRISVGNPHLACRVARPVA 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,867,536
Number of Sequences: 539616
Number of extensions: 4216579
Number of successful extensions: 10053
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10033
Number of HSP's gapped (non-prelim): 23
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)