Query 020711
Match_columns 322
No_of_seqs 122 out of 209
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y1n_A E3 ubiquitin-protein li 47.4 0.29 9.9E-06 47.9 -8.0 48 209-258 226-278 (389)
2 3gm3_A Protein tyrosine kinase 17.3 2.2E+02 0.0076 24.1 5.6 62 30-108 52-128 (153)
3 1jek_B ENV polyprotein; envelo 16.1 93 0.0032 20.2 2.3 21 47-67 1-21 (36)
4 1fll_X B-cell surface antigen 15.3 74 0.0025 19.1 1.5 16 276-291 7-22 (26)
5 2c7h_A RBBP6, retinoblastoma-b 12.3 47 0.0016 25.6 0.0 12 70-82 54-65 (86)
6 16vp_A Protein (VP16, VMW65, A 12.0 3.5E+02 0.012 25.9 6.0 44 23-66 118-184 (366)
7 2yf4_A MAZG-like nucleoside tr 11.4 4.3E+02 0.015 22.1 5.8 60 9-69 29-97 (154)
8 3izo_F Fiber; pentameric pento 10.3 1.1E+02 0.0037 31.3 2.0 48 273-321 371-426 (581)
9 3vie_B Sifuvirtide; 6-helix bu 9.5 2.4E+02 0.0083 17.8 2.8 21 47-67 2-22 (37)
10 3fwc_B Nuclear mRNA export pro 9.5 6E+02 0.02 19.1 6.0 37 28-66 16-52 (85)
No 1
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=47.39 E-value=0.29 Score=47.88 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=39.4
Q ss_pred ccccchhhhhcCc-----eeeeeCCCCCCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 020711 209 GLYYHISKRTAGI-----RYVFIGKPTNQRPRYQILGVFLLIQLCIIAAEGLRRS 258 (322)
Q Consensus 209 G~YY~lsKRl~GI-----rYv~~~~~~~~r~sY~lLG~llllQL~v~~~~~lr~~ 258 (322)
=+|+++.+|+-|. +|+|-- +..+.++.+||+++++|++++.+..+++.
T Consensus 226 ~ty~ev~~~Lk~~~~~~GsYIfRl--s~trlGq~~LG~v~~~q~ivqti~~~ksl 278 (389)
T 2y1n_A 226 LTYDEVKARLQKFIHKPGSYIFRL--SCTRLGQWAIGYVTADGNILQTIPHNKPL 278 (389)
T ss_dssp CCHHHHHHHHGGGTTSTTEEEEEE--CSSSTTSEEEEEECTTSCEEEECCCSSCH
T ss_pred ccHHHHHHHHHHhhccCCceEecc--CcchHhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3699999999999 999932 22577889999999999999988877754
No 2
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=17.30 E-value=2.2e+02 Score=24.09 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcc------hhHHHhhhhHHHHHHHHHHHHHHhcCCC---------CCcchhhhccEeecCCCCCCCc
Q 020711 30 FIYDACRDAFRQLFG------TRVAVAYQSETKLVGQMLYYVLTTGSGQ---------QTLGEEYCDITQVVGPQRLPPT 94 (322)
Q Consensus 30 ~L~~~l~dvlr~l~G------~R~~~~~~~Ei~lls~lLY~~LTTl~G~---------QTLGEEYcdIvqV~~~~~~~Ps 94 (322)
.+-..+...+|.|++ +.+=-.=++||++.-++|+--+.-+... -||-|||
T Consensus 52 ~lVK~VGl~LR~Ll~sVd~~~~~lp~s~~~EIema~k~L~kDM~eLIs~MkLAqq~~~TtL~eEy--------------- 116 (153)
T 3gm3_A 52 VVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVTSLSEEC--------------- 116 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH---------------
Confidence 344556667777777 5555566799999999999887766433 4566665
Q ss_pred hhHHHHHHHHHhhh
Q 020711 95 PARRALFIVYQTAV 108 (322)
Q Consensus 95 ~~RR~l~Ill~~l~ 108 (322)
||-++-..|++.
T Consensus 117 --rr~MLsaaH~LA 128 (153)
T 3gm3_A 117 --KRQMLTASHTLA 128 (153)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 777777777665
No 3
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=16.14 E-value=93 Score=20.21 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 020711 47 VAVAYQSETKLVGQMLYYVLT 67 (322)
Q Consensus 47 ~~~~~~~Ei~lls~lLY~~LT 67 (322)
.|..|.+||.-+...+|-.|-
T Consensus 1 TWqqWereI~~~t~nIy~LLe 21 (36)
T 1jek_B 1 XWQQWEEEIEQHEGNLSLLLR 21 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 378999999999999998764
No 4
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=15.26 E-value=74 Score=19.11 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=11.5
Q ss_pred ccccCCCcccccccCC
Q 020711 276 QASTGRGLPVLNEEGS 291 (322)
Q Consensus 276 ~~~~~~~~~~~~~~~~ 291 (322)
|-..-.+.||.+|||+
T Consensus 7 qeTl~~~qPVaQEdGK 22 (26)
T 1fll_X 7 QETLHGSQPVTQEDGX 22 (26)
T ss_dssp CCCCCCSSSCCCCCC-
T ss_pred hHHhhcCccchhhccc
Confidence 3345578899999995
No 5
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=12.26 E-value=47 Score=25.61 Aligned_cols=12 Identities=50% Similarity=0.590 Sum_probs=9.5
Q ss_pred CCCCCcchhhhcc
Q 020711 70 SGQQTLGEEYCDI 82 (322)
Q Consensus 70 ~G~QTLGEEYcdI 82 (322)
...|| ||||.|=
T Consensus 54 ~na~T-~eeY~Dd 65 (86)
T 2c7h_A 54 TNAQT-KEEYTDD 65 (86)
T ss_dssp EESSS-CCEECST
T ss_pred eCCCC-CCccCCC
Confidence 45688 9999974
No 6
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Probab=11.99 E-value=3.5e+02 Score=25.86 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcchh-----------------------HHHhhhhHHHHHHHHHHHHH
Q 020711 23 KDEQYASFIYDACRDAFRQLFGTR-----------------------VAVAYQSETKLVGQMLYYVL 66 (322)
Q Consensus 23 KDe~y~~~L~~~l~dvlr~l~G~R-----------------------~~~~~~~Ei~lls~lLY~~L 66 (322)
|.+.|...|.+-|..+++.+.+.- ...+|-+|+.-++++||+-|
T Consensus 118 REe~Ya~Ll~~YC~AL~~YLr~sarr~~r~~~~~~~~~~~~~~~r~~I~~rYYRE~ArlArlLylHL 184 (366)
T 16vp_A 118 REESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHL 184 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999998888763321 24578899999999998866
No 7
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=11.35 E-value=4.3e+02 Score=22.15 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=35.3
Q ss_pred CCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHhcchhH---------HHhhhhHHHHHHHHHHHHHHhc
Q 020711 9 FPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRV---------AVAYQSETKLVGQMLYYVLTTG 69 (322)
Q Consensus 9 fP~A~qPeIIRA~QKDe~y~~~L~~~l~dvlr~l~G~R~---------~~~~~~Ei~lls~lLY~~LTTl 69 (322)
.|....|... ..++...-.+.+.|.+.|+...+-+... ....-...+.|++++|+..-++
T Consensus 29 ~~~~~~P~~~-~~~~~~lR~~li~EEl~E~~e~~~~~~~~~~~~~A~~~~dlve~aDAL~DllYv~~G~~ 97 (154)
T 2yf4_A 29 AATPERPTPP-PPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGAL 97 (154)
T ss_dssp CCCCSSCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccHHHHHHHHhChhhHHHHHH
Confidence 3455556554 5555556666777777777652222111 1234466788999999877654
No 8
>3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
Probab=10.33 E-value=1.1e+02 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=27.7
Q ss_pred cccccccCCCcccccccCCCCC---CCCCCCCc-cccCCc----Ccccccccccccc
Q 020711 273 GFQQASTGRGLPVLNEEGSLIP---SESDKGGW-VLDSTS----TSEVCLKCTNLIM 321 (322)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~t~----~~~~~~~c~lcl~ 321 (322)
++.+.+.|.|+=. |..|++.. ......-| ..|++. ..+.-.||+|||.
T Consensus 371 ~~i~vklG~gL~f-~s~G~i~~~~~~~~~~TLWTtpdPspNc~i~~~~D~KltL~Lt 426 (581)
T 3izo_F 371 KAMVPKLGTGLSF-DSTGAITVGNKNNDKLTLWTTPAPSPNCRLNAEKDAKLTLVLT 426 (581)
T ss_pred CceeeeccCceee-cCCCcEEecCCCCCCccccCCCCCCCCeEEecCCCcEEEEEEE
Confidence 3345556666543 45566552 22334788 556664 2334489999995
No 9
>3vie_B Sifuvirtide; 6-helix bundle, membrane fusion inhibition, HIV, viral prote antiviral protein complex; 1.80A {Human immunodeficiency virus 1}
Probab=9.54 E-value=2.4e+02 Score=17.75 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=17.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 020711 47 VAVAYQSETKLVGQMLYYVLT 67 (322)
Q Consensus 47 ~~~~~~~Ei~lls~lLY~~LT 67 (322)
.|..|.+||.-.....|-.|-
T Consensus 2 TW~qWekei~n~t~~Iy~lle 22 (37)
T 3vie_B 2 SWETWEREIENYTRQIYRILE 22 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999998886553
No 10
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=9.52 E-value=6e+02 Score=19.14 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHhhhhHHHHHHHHHHHHH
Q 020711 28 ASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVL 66 (322)
Q Consensus 28 ~~~L~~~l~dvlr~l~G~R~~~~~~~Ei~lls~lLY~~L 66 (322)
.+.+.+.+..++..++ +.-..-...|+.+++=||-++
T Consensus 16 ~~vV~~el~~~l~~~l--~~~~~R~~iI~sLs~eLy~AF 52 (85)
T 3fwc_B 16 KEVVNSSVISIVKREF--SEANYRKDFIDTMTRELYDAF 52 (85)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHH
Confidence 3455556666666665 245566688899999998875
Done!