BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020712
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 164/304 (53%), Gaps = 23/304 (7%)
Query: 31 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTL---------- 80
PGL +FY TCP+AE I+RE V+ ++ A LR FHDC VQ
Sbjct: 7 PGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 81 ---SEKEMDRSFGMR--NFRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYI 134
E++ + +R F+ + +I++ +EREC G VVSC+DIL L+ RD VV GGP
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 135 PLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTH 192
+ GRRD R S ++L LP + ++ +L +G+DA LV + G H++G H
Sbjct: 127 RVPLGRRDSRSFASTQDVLSD-LPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAH 185
Query: 193 CVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
C RL+P DP ++P + + CP D + V VR TP V DN YY +++
Sbjct: 186 CSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPNVFDNKYYIDLV 241
Query: 253 DNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 312
+ +GL + D L T+ TRP V++ A+SQ FF++F +I + + T +GE+R+ C
Sbjct: 242 NREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
Query: 313 NLAN 316
++ N
Sbjct: 302 SVRN 305
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 140/297 (47%), Gaps = 24/297 (8%)
Query: 37 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTL-------------SEK 83
FY TCP A I+R ++ + S +R FHDC V SEK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 84 EMDRSF-GMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRD 142
+ R F ++NIK A+E CPGVVSC+D+L L+ V GGP + GRRD
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRD 126
Query: 143 GRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY- 201
+ +P +S+S + +F+A+G++ LVAL G+H+ GR C +RL+
Sbjct: 127 SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFN 186
Query: 202 ----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL 257
DP LN + + CP + A D TP DNNY+ N+ N GL
Sbjct: 187 FSGTGNPDPTLNSTLLSTLQQLCPQ---NGSASTITNLDLSTPDAFDNNYFANLQSNDGL 243
Query: 258 MMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 312
+ D +L T T V A +Q FF+ F++++ + +PLTG+ GEIR C
Sbjct: 244 LQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 141/305 (46%), Gaps = 24/305 (7%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAV-------------QT 79
L FY TCP A ++R V+ ++ S +R FHDC V
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 80 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+SEK + R F ++NIK A+E CPGVVSC D+L L+ + V GGP +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 198
GRRD + +P +S + +F+A+G++ LVAL G+H+ GR C +
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 199 RLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 253
RL+ DP LN + + CP + D TP DNNY+ N+
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQ---KGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 254 NKGLMMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKV 311
N GL+ D +L T T V A +Q FF+ F++++ + +PLTG+ GEIR
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 312 CNLAN 316
C N
Sbjct: 301 CKKTN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 135/298 (45%), Gaps = 19/298 (6%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTLSEKEM------- 85
L NFY CP A I+ V + S LR FHDC VQ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 86 --DRSFG-----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+++ G +R F I+ IK VE CPGVVSCADIL ++ RD VVALGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 198
GRRD + LP ++S ++ F+ G LV L G+H++G+ C
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 199 RLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLM 258
R+Y E + ++P + + CP D + D TP DN YY N+ + KGL+
Sbjct: 182 RIYNESN--IDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAYYINLRNKKGLL 236
Query: 259 MVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 316
D QL T V + + F +F A+ + +PLTGT G+IR C N
Sbjct: 237 HSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 150/316 (47%), Gaps = 33/316 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 239 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 308 IRKVCNLANK---LHD 320
IR C + N LHD
Sbjct: 297 IRLNCRVVNSNSLLHD 312
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 240 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 297
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 298 IRLNCRVVNS 307
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 36/306 (11%)
Query: 36 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTL----------SEK-E 84
+ Y +CP I+R+QV + K A S +R FHDC V SEK
Sbjct: 5 DIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSEKLA 64
Query: 85 MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGR 144
+ R F I+ IK AVE CPGVVSCADIL L+ RD VV GGP + GR+DG
Sbjct: 65 IPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGL 124
Query: 145 KSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEV 204
+ LP + + ++ +F A+ ++ +VAL G+H+ G+ C +RL+
Sbjct: 125 VANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLF-NF 182
Query: 205 DPALNPDH------VPHMLHKCP----DAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN 254
A NPD + ++ CP I P DR T DNNY++N+L+
Sbjct: 183 TGAGNPDATLETSLLSNLQTVCPLGGNSNITAPL-------DRSTTDTFDNNYFKNLLEG 235
Query: 255 KGLMMVDHQLATD----KRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRK 310
KGL+ D L + T+ V+ ++SQ FF++F+ A ++ N G GE+R
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCA--MIRMGNISNGASGEVRT 293
Query: 311 VCNLAN 316
C + N
Sbjct: 294 NCRVIN 299
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G HS G+ C ++
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 239 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 297 IRLNCRVVNS 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 240 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 297
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 298 IRLNCRVVNS 307
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 239 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 297 IRLNCRVVNS 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 240 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 297
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 298 IRLNCRVVNS 307
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDMDLRTPTIFDNKYYVNLE 239
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 240 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 297
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 298 IRLNCRVVNS 307
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 240 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 297
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 298 IRLNCRVVNS 307
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 239 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 297 IRLNCRVVNS 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 147/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR FHDC V T S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 239 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 297 IRLNCRVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 146/310 (47%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S LR F DC V T S
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 240 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 297
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 298 IRLNCRVVNS 307
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 140/304 (46%), Gaps = 20/304 (6%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ-------------- 78
L + FY +CP AE ++++ V + + A +R FHDC V+
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 79 TLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
T + + + +R F I K AVE CP VSCADIL + RD G + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 198
GRRDG S A +P + + ++ FA + A +V L G+HS+G HC +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 199 RLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 253
RLY +DP L+P + + + CP + V D TP VLDN YY +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPIT-VSLDIITPSVLDNMYYTGVQL 240
Query: 254 NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 313
GL+ D L T+ VK A + + +F++A+ + + LTGT+GEIR C+
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 314 LANK 317
+ N
Sbjct: 301 VVNS 304
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 145/310 (46%), Gaps = 30/310 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ----------TLSE 82
L FY ++CP +I+R+ + + A S L F DC V T S
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 83 KEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP +
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLV 197
GRRD ++ ++ LP ++ + + F +G++ + LVAL G H+ G+ C ++
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 198 HRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 252
RLY DP LN ++ + CP + V D TP + DN YY N+
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 253 DNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 307
+ KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT+G+
Sbjct: 239 EQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQ 296
Query: 308 IRKVCNLANK 317
IR C + N
Sbjct: 297 IRLNCRVVNS 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 133/305 (43%), Gaps = 24/305 (7%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTLS----------- 81
L FY++TCP I+ + S +R FHDC VQ
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 82 EKEMD---RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
E E D +R + +IK AVE CP VSCADIL ++ V GGP P+
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 139 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVH 198
GRRD + + Q LP +++ + FA G++ LV L G H+ GR C ++
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 199 RLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 253
RLY DP LN ++ + +CP + D TP DN YY N+L
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQFDNRYYSNLLQ 238
Query: 254 NKGLMMVDHQLATD--KRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKV 311
GL+ D +L + T P V + +Q+ FF F ++ + LTG +GEIR
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 312 CNLAN 316
CN N
Sbjct: 299 CNFVN 303
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 27/260 (10%)
Query: 46 EDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTLSEKEMDRSF-------GMRNFRYIE 98
ED+I E+++L +W +DC + S F G +
Sbjct: 17 EDMISEKLEL---GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPR 73
Query: 99 NIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDH 158
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD
Sbjct: 74 KALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDG 132
Query: 159 NDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC-VKLVHRLYPEVDPALNPDHVPHML 217
+ + S V E F +G + VAL+G+H+ G TH H + + +L
Sbjct: 133 SKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLL 192
Query: 218 HKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKM 277
+ D + +PK Q DR T ++ ++ D L D R YV+
Sbjct: 193 DE--DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELY 237
Query: 278 AKSQDYFFKEFSRAITLLSE 297
AK D F K+F+ A L+E
Sbjct: 238 AKDNDRFNKDFANAFKKLTE 257
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y P V DN++Y N+L+
Sbjct: 183 -------------------KNSGYEGPWTANPNVFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 27/260 (10%)
Query: 46 EDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTLSEKEMDRSF-------GMRNFRYIE 98
ED+I E+++L +W +DC + S F G +
Sbjct: 16 EDMISEKLEL---GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPR 72
Query: 99 NIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDH 158
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD
Sbjct: 73 KALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDG 131
Query: 159 NDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC-VKLVHRLYPEVDPALNPDHVPHML 217
+ + S V E F +G + VAL+G+H+ G H H + + +L
Sbjct: 132 SKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLL 191
Query: 218 HKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKM 277
+ D + +PK Q DR T ++ ++ D L D R YV+
Sbjct: 192 DE--DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELY 236
Query: 278 AKSQDYFFKEFSRAITLLSE 297
AK D F K+F+ A L+E
Sbjct: 237 AKDNDRFNKDFANAFKKLTE 256
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 27/260 (10%)
Query: 46 EDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQTLSEKEMDRSF-------GMRNFRYIE 98
ED+I E+++L +W +DC + S F G +
Sbjct: 17 EDMISEKLEL---GPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPR 73
Query: 99 NIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDH 158
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD
Sbjct: 74 KALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDG 132
Query: 159 NDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC-VKLVHRLYPEVDPALNPDHVPHML 217
+ + S V E F +G + VAL+G+H+ G H H + + +L
Sbjct: 133 SKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLL 192
Query: 218 HKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKM 277
+ D + +PK Q DR T ++ ++ D L D R YV+
Sbjct: 193 DE--DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELY 237
Query: 278 AKSQDYFFKEFSRAITLLSE 297
AK D F K+F+ A L+E
Sbjct: 238 AKDNDRFNKDFANAFKKLTE 257
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y T V DN++Y N+L+
Sbjct: 183 -------------------KNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+T
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKT----------------- 180
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
H+ + ++ P + N+ V DN++Y N+L+
Sbjct: 181 ---HLKNSGYEGP----------WTANNN----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 191
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQLA 265
N + + K + + D + N+ D+K G MM+ D+ L
Sbjct: 192 N------------NVFTNEKYLNLLNEDW---KLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 266 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 237 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 85/208 (40%), Gaps = 47/208 (22%)
Query: 95 RYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQY 154
R +E IKE +VS AD L+G V GGP +P GR D + E
Sbjct: 78 RLLEPIKEQFP-----IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPP---EGR 129
Query: 155 LPDHNDSMSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHV 213
LPD + + F A+G+ +VAL G H++G
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAA---------------------- 167
Query: 214 PHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKR 269
HK P + N P++ DN+Y+ +L + GL+ + D L TD
Sbjct: 168 ----HKERSGFEGP----WTSN----PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSV 215
Query: 270 TRPYVKKMAKSQDYFFKEFSRAITLLSE 297
RP V+K A +D FF +++ A LSE
Sbjct: 216 FRPLVEKYAADEDVFFADYAEAHLKLSE 243
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 191
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N YY N+L+
Sbjct: 192 N-------------------------------NVFTNEYYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD++ V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 183 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 78/288 (27%)
Query: 38 YKDTCPQAEDIIR--EQVKLLYKRHKNTAFSW-----LRNIFHDCAVQTLSEKEMDRSFG 90
Y++ +D++R + + +H NT S+ + F+D + + G
Sbjct: 36 YENYIGYGDDLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPS-----------NAG 84
Query: 91 MRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE 149
++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 85 LQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTP 139
Query: 150 ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALN 209
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A N
Sbjct: 140 DNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAAN 195
Query: 210 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--------------- 254
V N +Y N+L+
Sbjct: 196 -------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWD 224
Query: 255 --KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 225 SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 42/220 (19%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+T
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKT----------------- 180
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYY--RNILDNK------GLMMV 260
H+ + ++ P A V + G +L+ ++ +N +N+ G MM+
Sbjct: 181 ---HLKNSGYEGPWG-----AANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 261 --DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNV 197
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L++ + +ND D+K G MM+ D+ L
Sbjct: 198 FTNEFYLNLLNEN---------WKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 238
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 239 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+T
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKT----------------- 180
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL---------------- 252
H+ + ++ P + N+ V DN++Y N+L
Sbjct: 181 ---HLKNSGYEGP----------WTANNN----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 253 DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D+K + D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 183 -------------------KNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNV 199
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L++ + +ND D+K G MM+ D+ L
Sbjct: 200 FTNEFYLNLLNEN---------WKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 240
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 241 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 194
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRN-ILDNK-GLMMV--DHQL 264
N C ++ N L+ N N D+K G MM+ D+ L
Sbjct: 195 N---------NC-------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL 238
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 239 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 62/229 (27%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 191
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
G V N +Y N+L+
Sbjct: 192 ---------------------------GGGANNVFTNEFYLNLLNEDWKLEKNDANNEQW 224
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 225 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 273
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 62/229 (27%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
G V N +Y N+L+
Sbjct: 186 ---------------------------GGGANNVFTNEFYLNLLNEDWKLEKNDANNEQW 218
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 219 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 267
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 185
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 186 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 227 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 62/229 (27%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 186
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
G V N +Y N+L+
Sbjct: 187 ---------------------------GGGANNVFTNEFYLNLLNEDWKLEKNDANNEQW 219
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 220 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 268
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 136 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNV 194
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L+ + + +ND D+K G MM+ D+ L
Sbjct: 195 FTNEFYLNLLN---------EDWKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 235
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 236 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 180 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNV 199
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L+ + + +ND D+K G MM+ D+ L
Sbjct: 200 FTNEFYLNLLN---------EDWKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 240
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 241 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 77 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 131
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHR-LYPEVDPA 207
LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 132 PD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNV 190
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATD 267
+ ++L+ + + +ND NN + ++ D+ L D
Sbjct: 191 FTNEFYLNLLN---------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQD 234
Query: 268 KRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
+ VK+ A QD FFK+FS+A L EN
Sbjct: 235 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 183 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 183 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 194
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 195 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV 197
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L++ + +ND D+K G MM+ D+ L
Sbjct: 198 FTNEFYLNLLNEN---------WKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 238
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 239 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 194
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 195 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 83 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 181
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 182 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 222
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 223 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 183 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 190
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRN-ILDNK-GLMMV--DHQL 264
P C + + ++ N L+ N N D+K G MM+ D+ L
Sbjct: 191 GP-------WGCANNV---FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL 240
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 241 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 83 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNV 196
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L+ + + +ND D+K G MM+ D+ L
Sbjct: 197 FTNEFYLNLLN---------EDWKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 237
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 238 IQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK--------------------------- 181
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
+A + P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 182 -------EASGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 196
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 197 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV 199
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATD 267
+ ++L+ + + +ND NN + ++ D+ L D
Sbjct: 200 FTNEFYLNLLN---------EDWKLEKNDA-------NNEQWDSKSGYIMLPTDYSLIQD 243
Query: 268 KRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
+ VK+ A QD FFK+FS+A L EN
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + Y +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNV 194
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L+ + + +ND D+K G MM+ D+ L
Sbjct: 195 FTNEFYLNLLN---------EDWKLEKNDANNEQ----------WDSKSGYMMLPTDYSL 235
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L E+
Sbjct: 236 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 180 -------------------KNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL G+H++G+T
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKT----------------- 180
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL---------------- 252
H+ + ++ P + N+ V DN++Y N+L
Sbjct: 181 ---HLKNSGYEGP----------WTANNN----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 253 DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D+K + D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 170
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 171 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPGGAA 194
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 195 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ ++ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 DSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPGGAA 192
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 193 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 270
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPGGAA 194
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 195 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 170
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 171 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 182
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 183 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 182
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 183 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 180 -------------------KNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 170
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 171 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 182
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 183 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH L + Y A
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH---LKNSGYEGPWGAA 197
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 198 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ ++ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 227 DSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 182
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 183 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL G+H++G+TH L + Y A
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTH---LKNSGYEGPWGAA 191
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 192 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 182
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 183 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 136
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 170
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 171 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 185 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ ++ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 DSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 180 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 180 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 183 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 102 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 161
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP---EGRLPDATKG 148
Query: 162 MSVVLERFA-AIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKC 220
+ + F A+G+ +VAL G H++G HK
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAA--------------------------HKE 182
Query: 221 PDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKK 276
P + N P++ DN+Y+ +L + +GL+ + D L +D RP V K
Sbjct: 183 RSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 277 MAKSQDYFFKEFSRAITLLSE 297
A +D FF +++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL---------------- 252
K Y V N +Y N+L
Sbjct: 180 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 253 DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D+K M D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 DSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 30/214 (14%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL-YPEVDPA 207
+ LPD + V F + ++ +VAL+G+H++G+TH + + + +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNV 197
Query: 208 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQL 264
+ ++L+ + + +ND D+K G MM+ + L
Sbjct: 198 FTNEFYLNLLN---------EDWKLEKNDANNEQ----------WDSKSGYMMLPTXYSL 238
Query: 265 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
D + VK+ A QD FFK+FS+A L EN
Sbjct: 239 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+T +L + Y A
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKT---ELKNSGYEGPWGAA 191
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 192 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+H++G+TH
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 185
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
K Y V N +Y N+L+
Sbjct: 186 -------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ + L D + VK+ A QD FFK+FS+A L EN
Sbjct: 227 DSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+ ++G+TH L + Y A
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTH---LKNSGYEGPWGAA 192
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 193 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+ ++G+TH L + Y A
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTH---LKNSGYEGPWGAA 192
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 193 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 90 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 148
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 149 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPAL 208
+ LPD + V F + ++ +VAL+G+ ++G+TH L + Y A
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTH---LKNSGYEGPWGAA 191
Query: 209 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN-------------- 254
N V N +Y N+L+
Sbjct: 192 N-------------------------------NVFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 255 ---KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 298
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 42/200 (21%)
Query: 112 VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSV--VLERF 169
V+ AD+ L+ + GGP IP+K GR D + E LPD + + F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 170 AAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKA 229
+G++ +VAL G+H++GR+ P+ P+
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSR---------PDRSGWGKPE------------------ 179
Query: 230 VQYVRNDRGTP---------MVLDNNYYRNILDNKG----LMMVDHQLATDKRTRPYVKK 276
+Y ++ G P + DN+Y+++I + + ++ D L D + Y +K
Sbjct: 180 TKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEK 239
Query: 277 MAKSQDYFFKEFSRAITLLS 296
A + FFK+++ A LS
Sbjct: 240 YAADPEAFFKDYAEAHAKLS 259
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 93/249 (37%), Gaps = 37/249 (14%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ +VDP+ +P P ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPS-----IPGTPFDSTPGVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRT----RPYVKKMAKSQDYFFKEFS 289
R P DN ++ L + + DH LA D +T + +V K Q+ F S
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMS 263
Query: 290 RAITLLSEN 298
+ + LL ++
Sbjct: 264 K-MALLGQD 271
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 90/243 (37%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEGFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ +VDP+ +P P+ ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 90/251 (35%), Gaps = 48/251 (19%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPQDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN 235
+V LL SHS+ +VDP++ P D+ P Q+
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPSIP--GTPF------DSTPGVFDSQFFIE 200
Query: 236 DRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFF 285
+ L + DNKG + DH LA D +T + M +Q
Sbjct: 201 TQ-----LKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQ 255
Query: 286 KEFSRAITLLS 296
F+ ++ ++
Sbjct: 256 NRFAATMSKMA 266
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 91/251 (36%), Gaps = 48/251 (19%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN 235
+V LL SHS+ +VDP++ P D+ P+ Q+
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPSIP--GTPF------DSTPEVFDSQFFIE 200
Query: 236 DRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFF 285
+ L + DNKG + DH LA D +T + M +Q
Sbjct: 201 TQ-----LKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQ 255
Query: 286 KEFSRAITLLS 296
F+ ++ ++
Sbjct: 256 NRFAATMSKMA 266
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 90/243 (37%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ +VDP+ +P P+ ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 91/251 (36%), Gaps = 48/251 (19%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN 235
+V+LL SHS+ +VDP++ P D+ P Q+
Sbjct: 159 PVEVVSLLASHSIAAAD----------KVDPSIP--GTPF------DSTPGVFDSQFFIE 200
Query: 236 DRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFF 285
+ L + DNKG + DH LA D +T + M +Q
Sbjct: 201 TQ-----LKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQ 255
Query: 286 KEFSRAITLLS 296
F+ ++ ++
Sbjct: 256 NRFAATMSKMA 266
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 88/251 (35%), Gaps = 48/251 (19%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN 235
+V LL SHS+ ++ P + P D P + Q+
Sbjct: 159 PVEVVWLLASHSIAA------ADKVDPSI-PGTPFDSTPQVFDS-----------QFFIE 200
Query: 236 DRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFF 285
+ L + DNKG + DH LA D +T + M +Q
Sbjct: 201 TQ-----LKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQ 255
Query: 286 KEFSRAITLLS 296
F+ ++ ++
Sbjct: 256 NRFAATMSKMA 266
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 89/243 (36%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ +VDP+ +P P+ ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 89/243 (36%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ VDP+ +P P+ ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------GVDPS-----IPGTPFDSTPEVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 89/243 (36%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ +VDP+ +P P+ ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPS-----IPGTPFDSTPEVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 90/251 (35%), Gaps = 48/251 (19%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN 235
+V LL SHS+ +VDP++ P D+ P Q+
Sbjct: 159 PVEVVWLLASHSIAAAA----------KVDPSIP--GTPF------DSTPGVFDSQFFIE 200
Query: 236 DRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFF 285
+ L + DNKG + DH LA D +T + M +Q
Sbjct: 201 TQ-----LKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQ 255
Query: 286 KEFSRAITLLS 296
F+ ++ ++
Sbjct: 256 NRFAATMSKMA 266
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 90/251 (35%), Gaps = 48/251 (19%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRN 235
+V LL SHS+ +VDP++ P D+ P Q+
Sbjct: 159 PVEVVWLLASHSIAAAD----------KVDPSIP--GTPF------DSTPGVFDSQFFIE 200
Query: 236 DRGTPMVLDNNYYRNILDNKG----------LMMVDHQLATDKRTRPYVKKMAKSQDYFF 285
+ L + DNKG + DH LA D +T + M +Q
Sbjct: 201 TQ-----LKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQ 255
Query: 286 KEFSRAITLLS 296
F+ ++ ++
Sbjct: 256 NRFAATMSKMA 266
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 89/243 (36%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P+ DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ +VDP+ +P P ++
Sbjct: 159 PVEVVYLLASHSIAAAD----------KVDPS-----IPGTPFDSTPGVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 88/243 (36%), Gaps = 32/243 (13%)
Query: 68 LRNIFHDCA--VQTLSEKEMDRSFGM-----RNFRYIENIKEAVERECPGV----VSCAD 116
LR FHD TL D S NF I E V + P V +S D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 117 ILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 175
+ +G GV GG IP GR D + + L +P DS+ +L R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSILARMGDAGFS 158
Query: 176 APGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHM-LHKCPDAIPDPKAVQYVR 234
+V LL SHS+ VDP+ +P P+ ++
Sbjct: 159 PVEVVWLLASHSIAAAD----------GVDPS-----IPGTPFDSTPEVFDSQFFIETQL 203
Query: 235 NDRGTPMVLDN-NYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAIT 293
R P DN ++ L + + DH LA D +T + M +Q F+ ++
Sbjct: 204 KGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMS 263
Query: 294 LLS 296
++
Sbjct: 264 KMA 266
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 93 NFRYIENIKEAVERECP-----GVVSCADILVLSGRDGVVAL----GGPYIPLKTGRRDG 143
NF I ++V P +S AD++ +G VAL G P + GR +
Sbjct: 76 NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGAPRLEFLAGRPN- 131
Query: 144 RKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLGSHSVGRTHCV 194
K+ A + + +P+ DS++ +L+RF G P +V+LL SHSV R + V
Sbjct: 132 -KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKV 181
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 93 NFRYIENIKEAVERECP-----GVVSCADILVLSGRDGVVAL----GGPYIPLKTGRRDG 143
NF I ++V P +S AD++ +G VAL G P + GR +
Sbjct: 76 NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGAPRLEFLAGRPN- 131
Query: 144 RKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLGSHSVGRTHCV 194
K+ A + + +P+ DS++ +L+RF G P +V+LL SHSV R + V
Sbjct: 132 -KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKV 181
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 112 VSCADILVLSGRDGVV-ALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFA 170
VS D + +G G GGP + GR + + + L +PD DS +L R A
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNISQPSPDGL---VPDPTDSADKILARMA 160
Query: 171 AIGIDAPGLVALLGSHSVGRTH 192
IG +V LL SHS+ +
Sbjct: 161 DIGFSPTEVVHLLASHSIAAQY 182
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 93 NFRYIENIKEAVERECP-----GVVSCADILVLSGRDGVVAL----GGPYIPLKTGRRDG 143
NF I ++V P +S AD++ +G VAL G P + GR +
Sbjct: 76 NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGAPRLEFLAGRPN- 131
Query: 144 RKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLGSHSVGRT 191
K+ A + + +P+ DS++ +L+RF G P +V+LL SHSV R
Sbjct: 132 -KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARA 178
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 167 ERFAAIGIDAPGLVALLGSHSVGRTHCVKLV 197
ERFA +GID P + L G G+T C + V
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 100 IKEAVERECPGVVSCADILVLSGRDGVVALGGP-----YIPLKTGRRDGRKSRA--EILE 152
+ E +++E G S ADI+VL+G GV ++P GR D R+ + E+ E
Sbjct: 95 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFE 153
Query: 153 QYLP------------DHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 188
P D + + S+++++ + + AP + AL+G V
Sbjct: 154 LLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRV 201
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 20/108 (18%)
Query: 100 IKEAVERECPGVVSCADILVLSGRDGV-----VALGGPYIPLKTGRRDGRKSRA--EILE 152
+ E +++E G S ADI+VL+G GV A ++P GR D R+ + E+ E
Sbjct: 112 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFE 170
Query: 153 QYLP------------DHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 188
P D + + S+++++ + + AP + AL+G V
Sbjct: 171 LLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRV 218
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 108 CPGVVSCADILVLSGRDGVVALGGPYIPLKT 138
CP SCA LV GR G+ AL P +P +T
Sbjct: 4 CPAPCSCAGTLVDCGRRGLTAL--PALPART 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,322,026
Number of Sequences: 62578
Number of extensions: 394545
Number of successful extensions: 1163
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 196
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)