BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020713
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 55/71 (77%)

Query: 158 AFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVT 217
              T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C V+K VER+ TDP  VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 218 TYEGQHNHPSP 228
           TYEG+HNH  P
Sbjct: 67  TYEGKHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 97.4 bits (241), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 54/73 (73%)

Query: 156 RFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIV 215
           R    T++  D + DGYRWRKYGQK+VK SP+PRSYYRC+S  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 216 VTTYEGQHNHPSP 228
           +TTYEG+H+H  P
Sbjct: 62  ITTYEGKHDHDMP 74


>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
          Length = 375

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 160 MTKSEVDHLEDGYRWRKYGQKAVKDSPF--PRSYYRCTSAS------CNVKKRVERSYTD 211
             K+E D L    +   YG    K  PF   R + R T+ S      C+   R +  Y D
Sbjct: 264 CVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFD 323

Query: 212 PSIVVTTYEGQH 223
           P +  +T  G H
Sbjct: 324 PELYRSTGHGGH 335


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,938,196
Number of Sequences: 62578
Number of extensions: 340879
Number of successful extensions: 543
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 7
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)