Query 020713
Match_columns 322
No_of_seqs 195 out of 708
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.4E-35 4.9E-40 232.2 5.3 75 155-229 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.7E-35 5.8E-40 232.8 3.7 75 155-229 4-78 (78)
3 2rpr_A Flywch-type zinc finger 47.3 8.6 0.00029 29.1 1.9 49 167-228 23-74 (87)
4 1cz6_A Protein (androctonin); 23.4 24 0.00082 22.3 0.7 8 190-197 16-23 (26)
5 3a2a_A Voltage-gated hydrogen 18.3 16 0.00055 27.3 -1.1 12 302-313 46-57 (58)
6 3vmx_A Voltage-gated hydrogen 15.1 23 0.00079 25.6 -0.9 9 302-310 39-47 (48)
7 1xiw_B T-cell surface glycopro 12.9 32 0.0011 26.0 -0.7 49 169-225 17-75 (79)
8 3ed7_A Tsase, TS, thymidylate 9.1 58 0.002 30.9 -0.5 12 169-180 116-127 (295)
9 3kgb_A Thymidylate synthase 1/ 9.0 58 0.002 30.8 -0.6 12 169-180 113-124 (294)
10 1odh_A MGCM1; transcription fa 8.6 2.1E+02 0.0072 25.4 2.9 36 192-230 123-159 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-35 Score=232.21 Aligned_cols=75 Identities=57% Similarity=1.065 Sum_probs=72.6
Q ss_pred ceeEEEeccccCCCCCchhhhhcCccccCCCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCCCCCC
Q 020713 155 PRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 229 (322)
Q Consensus 155 ~R~~~~T~Sevd~ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P~ 229 (322)
.|++|.|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.7e-35 Score=232.81 Aligned_cols=75 Identities=63% Similarity=1.106 Sum_probs=69.5
Q ss_pred ceeEEEeccccCCCCCchhhhhcCccccCCCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCCCCCC
Q 020713 155 PRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL 229 (322)
Q Consensus 155 ~R~~~~T~Sevd~ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P~ 229 (322)
.+++|+|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=47.27 E-value=8.6 Score=29.12 Aligned_cols=49 Identities=14% Similarity=0.328 Sum_probs=30.4
Q ss_pred CCCCchhhhhcCccccCCCCCCccceeccC---CCCchhhhhhhccCCCCEEEEEEeccCCCCCC
Q 020713 167 HLEDGYRWRKYGQKAVKDSPFPRSYYRCTS---ASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 228 (322)
Q Consensus 167 ~ldDGY~WRKYGQK~IKgsp~PRsYYRCt~---~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P 228 (322)
.+-|||.-.+--+ ...+.|.+|+. .+|.|+=.... + . +.-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 3478988665321 12468999996 48999743322 2 1 234688999753
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=23.39 E-value=24 Score=22.33 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=6.6
Q ss_pred cceeccCC
Q 020713 190 SYYRCTSA 197 (322)
Q Consensus 190 sYYRCt~~ 197 (322)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 5
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=18.28 E-value=16 Score=27.29 Aligned_cols=12 Identities=50% Similarity=1.041 Sum_probs=5.4
Q ss_pred cccccCcccccc
Q 020713 302 DLLKDHGLLQDI 313 (322)
Q Consensus 302 ~~l~D~GLLqDi 313 (322)
.||++||||-|+
T Consensus 46 ~LLkqHgl~~e~ 57 (58)
T 3a2a_A 46 KLLRQHGLLGEV 57 (58)
T ss_dssp HHHHHC------
T ss_pred HHHHHcCCcccC
Confidence 789999999764
No 6
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=15.12 E-value=23 Score=25.59 Aligned_cols=9 Identities=67% Similarity=1.051 Sum_probs=7.9
Q ss_pred cccccCccc
Q 020713 302 DLLKDHGLL 310 (322)
Q Consensus 302 ~~l~D~GLL 310 (322)
.||+|||||
T Consensus 39 ~LLkqHgll 47 (48)
T 3vmx_A 39 KLLKQNGLL 47 (48)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 788999997
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=12.90 E-value=32 Score=26.03 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCchhhhhcCccc--------cC--CCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCC
Q 020713 169 EDGYRWRKYGQKA--------VK--DSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH 225 (322)
Q Consensus 169 dDGY~WRKYGQK~--------IK--gsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH 225 (322)
..++.|.|-|... +. ...-||++|.|... +.+... .+.+.+-|.=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~-----~~~~~~---~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT-----DIYKDK---ESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC-----CCCCcc---cEEEEEEhhhcCCc
Confidence 5678899987541 22 34449999999332 211110 12566666655554
No 8
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=9.11 E-value=58 Score=30.86 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.7
Q ss_pred CCchhhhhcCcc
Q 020713 169 EDGYRWRKYGQK 180 (322)
Q Consensus 169 dDGY~WRKYGQK 180 (322)
.=|++||.+|.+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 348999999875
No 9
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=8.96 E-value=58 Score=30.81 Aligned_cols=12 Identities=33% Similarity=1.149 Sum_probs=9.4
Q ss_pred CCchhhhhcCcc
Q 020713 169 EDGYRWRKYGQK 180 (322)
Q Consensus 169 dDGY~WRKYGQK 180 (322)
-=|++||.+|.+
T Consensus 113 vYG~QwR~~~~~ 124 (294)
T 3kgb_A 113 IYGFQWRHFGAR 124 (294)
T ss_dssp CHHHHHHSBTCC
T ss_pred ccchhhhcCCCc
Confidence 347999999865
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=8.60 E-value=2.1e+02 Score=25.38 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=21.9
Q ss_pred eeccC-CCCchhhhhhhccCCCCEEEEEEeccCCCCCCCC
Q 020713 192 YRCTS-ASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLL 230 (322)
Q Consensus 192 YRCt~-~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P~~ 230 (322)
+.|.- .|-+|. +.-|. |+..+...-+|.|+|+.|..
T Consensus 123 ~~Crgh~GyPVT-hFWrh--~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 123 IPCRGHGGFPVT-NFWRH--DGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp ECCCTBTTBCCE-EEEEE--CSSBEEEEEECCCCSCCCCC
T ss_pred EeccCcCCCcce-EEEEE--cCCEEEEecccccCCCCCCC
Confidence 44442 344443 24443 44556667799999999975
Done!