Query 020714
Match_columns 322
No_of_seqs 290 out of 3070
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:34:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 1.5E-26 3.3E-31 201.3 20.3 171 138-318 5-175 (298)
2 TIGR03156 GTP_HflX GTP-binding 99.9 5.6E-27 1.2E-31 215.8 17.2 245 54-313 66-350 (351)
3 PRK11058 GTPase HflX; Provisio 99.9 6.3E-26 1.4E-30 213.4 17.1 245 59-316 79-363 (426)
4 COG2262 HflX GTPases [General 99.9 2.8E-26 6.1E-31 207.1 13.9 252 51-316 66-357 (411)
5 COG1160 Predicted GTPases [Gen 99.9 7.5E-25 1.6E-29 200.8 20.0 248 45-320 83-356 (444)
6 TIGR00436 era GTP-binding prot 99.9 1.9E-24 4.2E-29 193.2 20.6 167 141-319 2-168 (270)
7 PRK03003 GTP-binding protein D 99.9 1E-23 2.3E-28 202.3 24.4 248 45-320 117-387 (472)
8 COG0486 ThdF Predicted GTPase 99.9 4.9E-24 1.1E-28 195.9 21.0 166 135-317 213-378 (454)
9 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-23 4.8E-28 198.5 25.1 246 45-318 78-347 (429)
10 KOG0092 GTPase Rab5/YPT51 and 99.9 1.4E-24 2.9E-29 176.5 14.2 167 137-318 3-170 (200)
11 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.2E-24 4.7E-29 176.0 13.7 169 136-318 6-175 (205)
12 PRK15494 era GTPase Era; Provi 99.9 1.2E-23 2.7E-28 193.3 20.2 171 137-319 50-220 (339)
13 COG1160 Predicted GTPases [Gen 99.9 9.1E-24 2E-28 193.7 17.6 161 140-314 4-164 (444)
14 PRK00089 era GTPase Era; Revie 99.9 3.3E-23 7.3E-28 187.4 21.1 171 138-318 4-174 (292)
15 KOG1423 Ras-like GTPase ERA [C 99.9 8.7E-24 1.9E-28 183.1 16.2 184 134-322 67-278 (379)
16 PRK00093 GTP-binding protein D 99.9 1.2E-22 2.6E-27 193.8 25.1 244 45-318 80-347 (435)
17 PF02421 FeoB_N: Ferrous iron 99.9 2.9E-24 6.4E-29 174.1 10.0 156 140-310 1-156 (156)
18 cd04142 RRP22 RRP22 subfamily. 99.9 4.7E-23 1E-27 175.8 17.7 173 140-320 1-179 (198)
19 cd01878 HflX HflX subfamily. 99.9 7.5E-22 1.6E-26 169.3 23.1 165 136-314 38-204 (204)
20 PRK05291 trmE tRNA modificatio 99.9 3.4E-22 7.3E-27 190.1 21.2 160 136-316 212-371 (449)
21 cd01865 Rab3 Rab3 subfamily. 99.9 1.3E-22 2.8E-27 168.1 16.0 162 140-316 2-164 (165)
22 cd04163 Era Era subfamily. Er 99.9 7.3E-22 1.6E-26 162.4 20.4 166 139-314 3-168 (168)
23 cd04140 ARHI_like ARHI subfami 99.9 1.2E-22 2.7E-27 168.2 15.7 160 140-313 2-163 (165)
24 PRK12299 obgE GTPase CgtA; Rev 99.9 2.4E-22 5.1E-27 183.7 18.9 173 137-318 156-331 (335)
25 cd04122 Rab14 Rab14 subfamily. 99.9 1.5E-22 3.2E-27 167.8 15.9 160 140-316 3-165 (166)
26 cd04120 Rab12 Rab12 subfamily. 99.9 1.7E-22 3.6E-27 172.7 16.3 160 141-316 2-164 (202)
27 cd01897 NOG NOG1 is a nucleola 99.9 5E-22 1.1E-26 164.7 18.8 166 141-314 2-167 (168)
28 cd01867 Rab8_Rab10_Rab13_like 99.9 2E-22 4.3E-27 167.3 16.0 163 139-316 3-166 (167)
29 PRK09518 bifunctional cytidyla 99.9 1.2E-21 2.7E-26 196.3 24.6 249 45-319 354-625 (712)
30 cd01894 EngA1 EngA1 subfamily. 99.9 5.1E-22 1.1E-26 162.3 17.7 157 143-314 1-157 (157)
31 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 1.3E-22 2.9E-27 164.9 13.4 165 138-317 21-187 (221)
32 cd04121 Rab40 Rab40 subfamily. 99.9 1.8E-22 3.9E-27 170.8 14.6 162 138-317 5-169 (189)
33 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.9E-22 1.9E-26 160.8 18.3 156 139-314 1-156 (157)
34 cd01864 Rab19 Rab19 subfamily. 99.9 3.7E-22 8.1E-27 165.2 16.2 161 139-314 3-165 (165)
35 cd04136 Rap_like Rap-like subf 99.9 2E-22 4.2E-27 166.1 14.3 158 140-314 2-162 (163)
36 cd01898 Obg Obg subfamily. Th 99.9 4.8E-22 1E-26 165.1 16.2 166 141-314 2-170 (170)
37 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.9E-22 1.1E-26 164.6 16.0 162 139-316 2-165 (166)
38 cd04144 Ras2 Ras2 subfamily. 99.9 2.3E-22 4.9E-27 170.6 14.2 160 141-317 1-165 (190)
39 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.9E-22 4.2E-27 168.4 13.3 162 139-317 2-166 (172)
40 cd01866 Rab2 Rab2 subfamily. 99.9 5.8E-22 1.3E-26 164.7 15.9 163 139-316 4-167 (168)
41 cd04112 Rab26 Rab26 subfamily. 99.9 8.4E-22 1.8E-26 167.3 17.0 164 140-318 1-166 (191)
42 cd04133 Rop_like Rop subfamily 99.9 4.3E-22 9.4E-27 166.6 14.7 158 140-315 2-173 (176)
43 cd04109 Rab28 Rab28 subfamily. 99.9 7E-22 1.5E-26 170.9 16.4 163 140-318 1-169 (215)
44 KOG0078 GTP-binding protein SE 99.9 3.3E-22 7.1E-27 165.6 13.5 166 136-316 9-175 (207)
45 smart00173 RAS Ras subfamily o 99.9 6.7E-22 1.4E-26 163.3 15.4 160 140-316 1-163 (164)
46 KOG0098 GTPase Rab2, small G p 99.9 2.7E-22 5.8E-27 161.9 12.1 164 138-316 5-169 (216)
47 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 7.4E-22 1.6E-26 169.0 15.7 163 140-317 1-170 (201)
48 PRK03003 GTP-binding protein D 99.9 1.4E-21 3.1E-26 187.6 19.3 165 137-316 36-200 (472)
49 cd01868 Rab11_like Rab11-like. 99.9 7.4E-22 1.6E-26 163.3 15.1 160 139-314 3-164 (165)
50 cd04175 Rap1 Rap1 subgroup. T 99.9 4.8E-22 1.1E-26 164.3 13.9 159 140-315 2-163 (164)
51 cd04119 RJL RJL (RabJ-Like) su 99.9 8.6E-22 1.9E-26 162.8 15.3 160 140-315 1-167 (168)
52 cd04125 RabA_like RabA-like su 99.9 1E-21 2.2E-26 166.3 15.9 163 140-317 1-164 (188)
53 cd04126 Rab20 Rab20 subfamily. 99.9 5.2E-22 1.1E-26 171.6 14.0 159 140-316 1-191 (220)
54 cd01895 EngA2 EngA2 subfamily. 99.9 5.2E-21 1.1E-25 158.7 19.5 168 139-313 2-173 (174)
55 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.7E-21 3.6E-26 160.7 16.4 159 139-314 2-163 (164)
56 cd04113 Rab4 Rab4 subfamily. 99.9 9.1E-22 2E-26 162.1 14.7 159 140-313 1-160 (161)
57 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4.6E-22 1E-26 167.4 13.1 163 138-315 4-180 (182)
58 cd04131 Rnd Rnd subfamily. Th 99.9 6.8E-22 1.5E-26 165.9 14.0 160 140-315 2-176 (178)
59 cd01861 Rab6 Rab6 subfamily. 99.9 1.7E-21 3.7E-26 160.3 16.2 159 140-314 1-161 (161)
60 cd04117 Rab15 Rab15 subfamily. 99.9 1.2E-21 2.7E-26 161.7 15.4 158 140-313 1-160 (161)
61 cd01860 Rab5_related Rab5-rela 99.9 1.6E-21 3.5E-26 160.7 15.5 160 140-314 2-162 (163)
62 smart00175 RAB Rab subfamily o 99.9 2.6E-21 5.6E-26 159.5 16.5 161 140-316 1-163 (164)
63 cd04176 Rap2 Rap2 subgroup. T 99.9 1.2E-21 2.7E-26 161.6 14.1 158 140-314 2-162 (163)
64 cd04127 Rab27A Rab27a subfamil 99.9 3.1E-21 6.8E-26 161.9 16.5 163 139-316 4-178 (180)
65 TIGR02729 Obg_CgtA Obg family 99.9 3.1E-21 6.7E-26 176.2 17.7 170 137-314 155-328 (329)
66 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.1E-21 6.7E-26 161.5 16.2 158 140-314 2-174 (175)
67 cd00877 Ran Ran (Ras-related n 99.9 2.1E-21 4.5E-26 161.1 14.8 159 140-316 1-160 (166)
68 cd04134 Rho3 Rho3 subfamily. 99.9 1.7E-21 3.7E-26 165.1 14.5 161 141-317 2-176 (189)
69 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3.1E-21 6.8E-26 167.7 16.2 165 138-317 12-190 (232)
70 cd04110 Rab35 Rab35 subfamily. 99.9 3.6E-21 7.9E-26 164.5 16.3 162 138-317 5-169 (199)
71 PRK12297 obgE GTPase CgtA; Rev 99.9 7.1E-21 1.5E-25 178.3 19.3 167 140-317 159-329 (424)
72 PRK12298 obgE GTPase CgtA; Rev 99.9 7.9E-21 1.7E-25 177.0 19.5 172 139-317 159-335 (390)
73 PTZ00369 Ras-like protein; Pro 99.9 4E-21 8.6E-26 162.9 15.9 162 138-317 4-169 (189)
74 cd04171 SelB SelB subfamily. 99.9 9.7E-21 2.1E-25 156.0 17.6 155 141-312 2-163 (164)
75 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.7E-21 1E-25 157.4 15.7 157 140-314 2-161 (162)
76 PLN03118 Rab family protein; P 99.9 3.9E-21 8.5E-26 165.7 15.9 166 137-317 12-179 (211)
77 cd01892 Miro2 Miro2 subfamily. 99.9 4.3E-21 9.3E-26 159.8 15.5 163 137-316 2-167 (169)
78 cd01875 RhoG RhoG subfamily. 99.9 2.7E-21 5.9E-26 164.2 14.6 160 139-316 3-178 (191)
79 cd01862 Rab7 Rab7 subfamily. 99.9 4.7E-21 1E-25 159.3 15.6 163 140-317 1-169 (172)
80 PLN03071 GTP-binding nuclear p 99.9 3.4E-21 7.4E-26 167.0 15.3 163 137-317 11-174 (219)
81 PLN03110 Rab GTPase; Provision 99.9 4.3E-21 9.4E-26 166.0 15.8 163 138-316 11-175 (216)
82 TIGR03594 GTPase_EngA ribosome 99.9 6.6E-21 1.4E-25 181.5 18.3 161 141-316 1-161 (429)
83 cd04149 Arf6 Arf6 subfamily. 99.9 5E-21 1.1E-25 159.2 15.3 156 138-312 8-167 (168)
84 cd04128 Spg1 Spg1p. Spg1p (se 99.9 4E-21 8.7E-26 161.8 14.8 160 140-317 1-168 (182)
85 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.5E-20 5.4E-25 176.5 21.9 163 135-316 199-361 (442)
86 PRK12296 obgE GTPase CgtA; Rev 99.9 8.7E-21 1.9E-25 179.8 18.6 174 136-317 156-342 (500)
87 smart00174 RHO Rho (Ras homolo 99.9 4.3E-21 9.2E-26 160.1 14.2 157 142-315 1-172 (174)
88 cd04124 RabL2 RabL2 subfamily. 99.9 7.5E-21 1.6E-25 156.9 15.5 159 140-317 1-160 (161)
89 cd04106 Rab23_lke Rab23-like s 99.9 5.8E-21 1.3E-25 157.3 14.6 157 140-313 1-161 (162)
90 cd04116 Rab9 Rab9 subfamily. 99.9 7.3E-21 1.6E-25 158.2 15.2 162 138-314 4-170 (170)
91 KOG0087 GTPase Rab11/YPT3, sma 99.9 2.5E-21 5.4E-26 159.7 11.6 166 136-316 11-177 (222)
92 cd01871 Rac1_like Rac1-like su 99.9 7.2E-21 1.6E-25 159.1 14.6 157 140-313 2-173 (174)
93 PRK00093 GTP-binding protein D 99.9 1.6E-20 3.4E-25 179.2 18.9 160 140-314 2-161 (435)
94 KOG0394 Ras-related GTPase [Ge 99.9 5.1E-21 1.1E-25 154.3 13.0 168 137-318 7-181 (210)
95 cd04123 Rab21 Rab21 subfamily. 99.9 1.6E-20 3.4E-25 154.3 16.4 159 140-314 1-161 (162)
96 cd04135 Tc10 TC10 subfamily. 99.9 6.5E-21 1.4E-25 159.0 14.2 159 140-314 1-173 (174)
97 PRK09563 rbgA GTPase YlqF; Rev 99.9 2.5E-21 5.4E-26 174.3 12.2 159 23-201 4-180 (287)
98 cd04177 RSR1 RSR1 subgroup. R 99.9 1E-20 2.2E-25 157.1 15.0 160 140-315 2-164 (168)
99 cd00154 Rab Rab family. Rab G 99.9 9.5E-21 2E-25 154.5 14.4 157 140-311 1-158 (159)
100 cd04132 Rho4_like Rho4-like su 99.9 1.1E-20 2.5E-25 159.6 15.2 163 140-318 1-170 (187)
101 KOG2485 Conserved ATP/GTP bind 99.9 2.4E-21 5.2E-26 168.9 11.2 172 10-201 13-210 (335)
102 cd04111 Rab39 Rab39 subfamily. 99.9 1.8E-20 3.9E-25 161.5 16.7 163 139-317 2-168 (211)
103 COG1161 Predicted GTPases [Gen 99.9 1.2E-21 2.5E-26 178.5 9.7 161 22-202 13-192 (322)
104 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.5E-20 3.4E-25 156.5 15.6 159 141-316 2-166 (170)
105 cd00157 Rho Rho (Ras homology) 99.9 8.7E-21 1.9E-25 157.5 14.1 157 140-312 1-170 (171)
106 cd04154 Arl2 Arl2 subfamily. 99.9 2E-20 4.3E-25 156.2 16.3 157 137-312 12-172 (173)
107 KOG1191 Mitochondrial GTPase [ 99.9 1.1E-20 2.4E-25 173.5 15.6 180 135-317 264-452 (531)
108 cd04158 ARD1 ARD1 subfamily. 99.9 1.9E-20 4.2E-25 155.8 15.8 158 141-318 1-164 (169)
109 TIGR03596 GTPase_YlqF ribosome 99.9 5.6E-21 1.2E-25 171.2 13.4 158 24-201 2-177 (276)
110 PLN03108 Rab family protein; P 99.9 1.8E-20 3.9E-25 161.5 16.0 163 138-317 5-170 (210)
111 cd04103 Centaurin_gamma Centau 99.9 8E-21 1.7E-25 156.4 13.1 152 140-313 1-157 (158)
112 cd04139 RalA_RalB RalA/RalB su 99.9 1.7E-20 3.7E-25 154.5 15.1 160 140-316 1-163 (164)
113 KOG0080 GTPase Rab18, small G 99.9 4.4E-21 9.6E-26 151.0 10.8 165 137-316 9-175 (209)
114 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.5E-20 5.3E-25 153.6 15.9 154 140-312 1-158 (159)
115 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.7E-20 5.9E-25 153.6 16.2 159 140-314 1-163 (164)
116 PRK09518 bifunctional cytidyla 99.9 3.5E-20 7.7E-25 185.9 20.0 163 139-316 275-437 (712)
117 cd01881 Obg_like The Obg-like 99.9 1.1E-20 2.4E-25 157.5 13.7 163 144-313 1-175 (176)
118 cd01863 Rab18 Rab18 subfamily. 99.9 2.4E-20 5.2E-25 153.5 15.5 158 140-313 1-160 (161)
119 cd04146 RERG_RasL11_like RERG/ 99.9 9.1E-21 2E-25 156.9 12.9 159 141-315 1-164 (165)
120 PLN00223 ADP-ribosylation fact 99.9 3.2E-20 7E-25 156.2 16.4 159 137-316 15-179 (181)
121 cd04118 Rab24 Rab24 subfamily. 99.8 2.5E-20 5.5E-25 158.3 15.7 160 140-317 1-168 (193)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.3E-20 4.9E-25 154.6 15.0 157 141-312 1-166 (167)
123 smart00177 ARF ARF-like small 99.8 3.3E-20 7.1E-25 155.3 16.1 158 138-315 12-174 (175)
124 KOG2484 GTPase [General functi 99.8 1E-21 2.2E-26 176.0 7.1 161 25-202 131-312 (435)
125 PRK04213 GTP-binding protein; 99.8 8.2E-20 1.8E-24 156.2 18.7 171 138-319 8-196 (201)
126 cd04148 RGK RGK subfamily. Th 99.8 3.2E-20 6.8E-25 161.2 16.1 160 140-316 1-164 (221)
127 cd04114 Rab30 Rab30 subfamily. 99.8 3.2E-20 7E-25 154.0 15.5 161 138-314 6-168 (169)
128 cd04143 Rhes_like Rhes_like su 99.8 3.3E-20 7.1E-25 163.3 16.2 160 140-315 1-171 (247)
129 cd04157 Arl6 Arl6 subfamily. 99.8 3.2E-20 7E-25 152.7 15.1 153 141-312 1-161 (162)
130 TIGR02528 EutP ethanolamine ut 99.8 3.4E-20 7.5E-25 149.5 14.5 140 141-311 2-141 (142)
131 cd01879 FeoB Ferrous iron tran 99.8 4.8E-20 1E-24 151.0 15.5 157 144-315 1-157 (158)
132 cd04130 Wrch_1 Wrch-1 subfamil 99.8 3.1E-20 6.6E-25 155.1 14.6 157 140-312 1-171 (173)
133 cd04115 Rab33B_Rab33A Rab33B/R 99.8 3.6E-20 7.8E-25 154.2 14.8 161 139-314 2-168 (170)
134 PTZ00133 ADP-ribosylation fact 99.8 7.6E-20 1.6E-24 154.1 16.8 161 137-316 15-179 (182)
135 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 3.1E-20 6.6E-25 160.7 14.6 160 140-316 2-177 (222)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 6.8E-20 1.5E-24 153.2 15.8 155 138-312 14-173 (174)
137 cd01893 Miro1 Miro1 subfamily. 99.8 6.7E-20 1.4E-24 152.0 15.5 160 140-315 1-164 (166)
138 smart00178 SAR Sar1p-like memb 99.8 7.9E-20 1.7E-24 154.2 15.9 158 137-313 15-183 (184)
139 TIGR03598 GTPase_YsxC ribosome 99.8 2E-19 4.3E-24 151.1 18.0 159 137-304 16-179 (179)
140 PRK00454 engB GTP-binding prot 99.8 4.3E-19 9.3E-24 150.9 20.1 171 136-316 21-195 (196)
141 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.2E-19 2.6E-24 153.0 16.5 162 139-316 3-171 (183)
142 cd01870 RhoA_like RhoA-like su 99.8 1E-19 2.2E-24 151.9 15.7 158 140-314 2-174 (175)
143 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.1E-19 2.3E-24 149.5 15.2 153 141-312 1-159 (160)
144 cd00879 Sar1 Sar1 subfamily. 99.8 1.1E-19 2.5E-24 153.8 15.8 159 137-314 17-190 (190)
145 cd04151 Arl1 Arl1 subfamily. 99.8 7.9E-20 1.7E-24 150.2 14.3 152 141-312 1-157 (158)
146 cd00876 Ras Ras family. The R 99.8 1.1E-19 2.4E-24 148.9 14.9 157 141-314 1-160 (160)
147 cd01890 LepA LepA subfamily. 99.8 8E-20 1.7E-24 153.1 14.3 155 141-315 2-177 (179)
148 cd01873 RhoBTB RhoBTB subfamil 99.8 6.5E-20 1.4E-24 156.0 13.5 157 139-313 2-194 (195)
149 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.5E-19 3.2E-24 150.2 14.6 154 141-312 1-166 (167)
150 cd01889 SelB_euk SelB subfamil 99.8 1.7E-19 3.7E-24 153.2 15.2 159 140-316 1-187 (192)
151 cd00881 GTP_translation_factor 99.8 2.5E-19 5.3E-24 151.0 16.0 157 141-315 1-187 (189)
152 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.1E-19 9E-24 147.0 17.1 156 141-315 2-166 (168)
153 PRK15467 ethanolamine utilizat 99.8 2.9E-19 6.3E-24 147.0 15.8 146 141-316 3-148 (158)
154 smart00176 RAN Ran (Ras-relate 99.8 1E-19 2.2E-24 155.3 13.2 155 145-317 1-156 (200)
155 cd04137 RheB Rheb (Ras Homolog 99.8 2.8E-19 6.1E-24 150.0 15.4 161 140-317 2-165 (180)
156 PF00071 Ras: Ras family; Int 99.8 8.6E-20 1.9E-24 150.3 12.1 158 141-315 1-161 (162)
157 cd04129 Rho2 Rho2 subfamily. 99.8 2.5E-19 5.5E-24 151.5 15.0 161 140-317 2-175 (187)
158 cd04155 Arl3 Arl3 subfamily. 99.8 2.8E-19 6E-24 149.0 14.9 157 137-312 12-172 (173)
159 cd00878 Arf_Arl Arf (ADP-ribos 99.8 4.1E-19 8.9E-24 145.7 15.7 153 141-312 1-157 (158)
160 cd04147 Ras_dva Ras-dva subfam 99.8 3.6E-19 7.7E-24 152.0 15.3 159 141-316 1-164 (198)
161 KOG0093 GTPase Rab3, small G p 99.8 1.7E-19 3.6E-24 140.1 11.7 165 138-317 20-185 (193)
162 COG0218 Predicted GTPase [Gene 99.8 2E-18 4.3E-23 143.1 18.6 170 138-316 23-198 (200)
163 COG1084 Predicted GTPase [Gene 99.8 2.9E-18 6.4E-23 151.0 20.3 173 136-316 165-337 (346)
164 TIGR00231 small_GTP small GTP- 99.8 1.4E-18 3E-23 141.2 17.1 157 140-311 2-160 (161)
165 cd00880 Era_like Era (E. coli 99.8 1.5E-18 3.3E-23 141.1 16.8 160 144-314 1-163 (163)
166 KOG0095 GTPase Rab30, small G 99.8 1.4E-19 3E-24 140.8 9.9 163 139-316 7-170 (213)
167 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5.7E-19 1.2E-23 146.2 13.9 151 142-312 2-163 (164)
168 PRK09554 feoB ferrous iron tra 99.8 1.5E-18 3.3E-23 173.8 18.6 166 139-315 3-168 (772)
169 PF00009 GTP_EFTU: Elongation 99.8 6.4E-19 1.4E-23 149.2 13.5 160 138-315 2-187 (188)
170 cd01896 DRG The developmentall 99.8 2.3E-18 5E-23 150.5 17.1 161 141-315 2-226 (233)
171 KOG0079 GTP-binding protein H- 99.8 1.6E-19 3.5E-24 140.3 8.4 163 140-318 9-172 (198)
172 KOG0091 GTPase Rab39, small G 99.8 2.8E-19 6.1E-24 141.3 9.8 164 138-316 7-174 (213)
173 KOG0086 GTPase Rab4, small G p 99.8 1.1E-18 2.5E-23 136.3 11.4 163 139-316 9-172 (214)
174 PF00025 Arf: ADP-ribosylation 99.8 4.1E-18 9E-23 142.6 15.7 158 137-314 12-175 (175)
175 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.6E-18 3.6E-23 149.0 12.5 149 141-306 1-185 (208)
176 cd04159 Arl10_like Arl10-like 99.8 5.7E-18 1.2E-22 138.1 15.0 153 142-312 2-158 (159)
177 cd01876 YihA_EngB The YihA (En 99.8 2.4E-17 5.3E-22 135.7 18.5 164 142-314 2-170 (170)
178 TIGR00437 feoB ferrous iron tr 99.8 4.7E-18 1E-22 166.5 16.3 154 146-314 1-154 (591)
179 cd04178 Nucleostemin_like Nucl 99.8 4.6E-18 1E-22 141.3 12.6 143 47-197 1-172 (172)
180 KOG0410 Predicted GTP binding 99.8 9.4E-18 2E-22 146.8 14.7 225 66-316 112-342 (410)
181 KOG1489 Predicted GTP-binding 99.8 4.1E-18 8.9E-23 148.9 12.4 168 137-313 194-365 (366)
182 KOG0088 GTPase Rab21, small G 99.8 9.5E-19 2.1E-23 137.5 7.5 165 135-317 9-177 (218)
183 KOG1424 Predicted GTP-binding 99.8 8E-19 1.7E-23 161.9 8.2 157 45-204 174-376 (562)
184 COG0370 FeoB Fe2+ transport sy 99.8 1.1E-17 2.4E-22 160.4 15.6 164 140-318 4-167 (653)
185 COG0536 Obg Predicted GTPase [ 99.8 1E-17 2.2E-22 148.1 13.5 171 140-317 160-335 (369)
186 cd01856 YlqF YlqF. Proteins o 99.8 5E-18 1.1E-22 141.5 11.1 153 25-198 1-171 (171)
187 cd01888 eIF2_gamma eIF2-gamma 99.8 2.8E-17 6E-22 140.9 15.4 160 140-316 1-200 (203)
188 cd01891 TypA_BipA TypA (tyrosi 99.8 4.2E-17 9.1E-22 138.7 16.3 148 140-306 3-173 (194)
189 TIGR00475 selB selenocysteine- 99.8 3.3E-17 7.1E-22 160.4 17.4 159 140-316 1-167 (581)
190 cd01884 EF_Tu EF-Tu subfamily. 99.7 4.4E-17 9.5E-22 138.4 15.7 147 139-303 2-171 (195)
191 KOG2423 Nucleolar GTPase [Gene 99.7 2.1E-19 4.6E-24 160.5 1.6 132 45-202 213-367 (572)
192 KOG0395 Ras-related GTPase [Ge 99.7 2.2E-17 4.7E-22 140.0 13.8 163 138-316 2-166 (196)
193 PF01926 MMR_HSR1: 50S ribosom 99.7 1.7E-17 3.8E-22 129.2 12.2 116 141-266 1-116 (116)
194 PRK12317 elongation factor 1-a 99.7 3.5E-17 7.5E-22 155.6 15.9 153 137-306 4-196 (425)
195 COG1163 DRG Predicted GTPase [ 99.7 6.5E-17 1.4E-21 142.0 16.1 165 137-315 61-289 (365)
196 KOG0097 GTPase Rab14, small G 99.7 2.6E-17 5.7E-22 127.1 11.8 165 138-317 10-175 (215)
197 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.3E-17 1.2E-21 138.4 15.0 173 140-318 1-187 (196)
198 TIGR00487 IF-2 translation ini 99.7 9.3E-17 2E-21 156.7 18.3 159 136-313 84-248 (587)
199 PRK05306 infB translation init 99.7 7.1E-17 1.5E-21 161.2 17.6 159 136-313 287-450 (787)
200 KOG0073 GTP-binding ADP-ribosy 99.7 1.6E-16 3.6E-21 125.9 15.3 161 138-319 15-182 (185)
201 cd00882 Ras_like_GTPase Ras-li 99.7 4.7E-17 1E-21 130.7 12.5 151 144-311 1-156 (157)
202 KOG0083 GTPase Rab26/Rab37, sm 99.7 1E-18 2.2E-23 133.6 2.1 161 143-318 1-163 (192)
203 PTZ00132 GTP-binding nuclear p 99.7 1.3E-16 2.9E-21 137.8 15.5 163 137-317 7-170 (215)
204 CHL00189 infB translation init 99.7 1.3E-16 2.8E-21 157.9 16.8 160 136-314 241-409 (742)
205 PF10662 PduV-EutP: Ethanolami 99.7 1.1E-16 2.4E-21 127.1 12.4 140 141-311 3-142 (143)
206 PRK09866 hypothetical protein; 99.7 2E-15 4.4E-20 144.4 22.2 116 187-313 230-351 (741)
207 PRK10512 selenocysteinyl-tRNA- 99.7 4.4E-16 9.4E-21 153.1 17.9 159 141-316 2-167 (614)
208 TIGR01393 lepA GTP-binding pro 99.7 2.2E-16 4.7E-21 154.8 15.5 158 139-316 3-181 (595)
209 cd01858 NGP_1 NGP-1. Autoanti 99.7 1.9E-16 4.1E-21 130.1 12.4 128 44-197 7-157 (157)
210 TIGR00491 aIF-2 translation in 99.7 3.8E-16 8.1E-21 152.2 16.4 157 138-314 3-215 (590)
211 COG3596 Predicted GTPase [Gene 99.7 4.3E-16 9.4E-21 134.3 14.8 172 136-319 36-226 (296)
212 KOG0081 GTPase Rab27, small G 99.7 1.3E-17 2.9E-22 131.2 4.9 162 140-316 10-182 (219)
213 cd04165 GTPBP1_like GTPBP1-lik 99.7 7.3E-16 1.6E-20 133.7 15.4 153 141-312 1-220 (224)
214 cd01883 EF1_alpha Eukaryotic e 99.7 2.9E-16 6.3E-21 136.1 12.6 147 141-304 1-194 (219)
215 cd01899 Ygr210 Ygr210 subfamil 99.7 1.1E-15 2.3E-20 138.8 16.1 165 142-316 1-270 (318)
216 TIGR00483 EF-1_alpha translati 99.7 8.9E-16 1.9E-20 145.9 15.7 152 137-305 5-197 (426)
217 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 3.1E-16 6.8E-21 126.5 10.7 109 44-199 10-140 (141)
218 CHL00071 tufA elongation facto 99.7 6.1E-16 1.3E-20 146.1 14.0 161 136-314 9-210 (409)
219 PRK12736 elongation factor Tu; 99.7 1.7E-15 3.7E-20 142.3 16.1 162 136-315 9-201 (394)
220 TIGR03680 eif2g_arch translati 99.7 1.5E-15 3.4E-20 143.2 15.7 161 138-315 3-196 (406)
221 PRK12735 elongation factor Tu; 99.7 2.3E-15 5E-20 141.5 16.0 163 135-315 8-203 (396)
222 PRK05433 GTP-binding protein L 99.7 2E-15 4.3E-20 148.2 15.7 158 139-316 7-185 (600)
223 cd01849 YlqF_related_GTPase Yl 99.7 1.8E-15 3.9E-20 124.0 13.0 124 56-197 29-155 (155)
224 cd04168 TetM_like Tet(M)-like 99.7 3.3E-15 7.1E-20 130.8 15.2 113 141-271 1-130 (237)
225 COG1100 GTPase SAR1 and relate 99.7 7.3E-15 1.6E-19 127.1 17.1 164 139-316 5-186 (219)
226 cd04104 p47_IIGP_like p47 (47- 99.6 3.4E-15 7.3E-20 127.4 14.5 163 139-317 1-186 (197)
227 TIGR00157 ribosome small subun 99.6 1.2E-15 2.6E-20 134.2 11.8 165 43-249 34-229 (245)
228 PRK04000 translation initiatio 99.6 3.5E-15 7.6E-20 140.7 15.5 163 137-316 7-202 (411)
229 PRK12289 GTPase RsgA; Reviewed 99.6 1.7E-15 3.8E-20 139.1 12.7 163 43-244 87-278 (352)
230 TIGR00485 EF-Tu translation el 99.6 4.6E-15 1E-19 139.5 15.5 160 136-313 9-199 (394)
231 PRK09602 translation-associate 99.6 8.1E-15 1.7E-19 137.0 16.9 88 140-233 2-113 (396)
232 KOG0393 Ras-related small GTPa 99.6 9.2E-16 2E-20 127.8 8.3 163 138-316 3-180 (198)
233 cd04102 RabL3 RabL3 (Rab-like3 99.6 9.3E-15 2E-19 124.7 14.7 147 140-301 1-176 (202)
234 KOG0070 GTP-binding ADP-ribosy 99.6 5E-15 1.1E-19 120.5 12.2 162 136-317 14-180 (181)
235 PRK12288 GTPase RsgA; Reviewed 99.6 1.6E-15 3.5E-20 139.3 10.1 156 53-249 147-315 (347)
236 PRK00049 elongation factor Tu; 99.6 7.6E-15 1.6E-19 138.0 14.9 163 135-315 8-203 (396)
237 PLN03127 Elongation factor Tu; 99.6 9.2E-15 2E-19 138.9 15.5 162 136-315 58-252 (447)
238 TIGR02034 CysN sulfate adenyly 99.6 6.8E-15 1.5E-19 138.7 14.1 149 140-305 1-187 (406)
239 KOG0075 GTP-binding ADP-ribosy 99.6 4.8E-15 1.1E-19 115.4 10.6 158 139-316 20-183 (186)
240 PRK05124 cysN sulfate adenylyl 99.6 1.2E-14 2.6E-19 139.2 15.8 155 135-306 23-216 (474)
241 PRK10218 GTP-binding protein; 99.6 2.7E-14 5.8E-19 139.8 18.3 161 138-316 4-196 (607)
242 PRK04004 translation initiatio 99.6 1.8E-14 3.9E-19 141.0 17.0 159 137-314 4-217 (586)
243 PRK05506 bifunctional sulfate 99.6 1.6E-14 3.4E-19 143.7 16.1 153 136-305 21-211 (632)
244 PTZ00099 rab6; Provisional 99.6 9E-15 1.9E-19 122.4 12.1 116 186-316 28-143 (176)
245 TIGR01394 TypA_BipA GTP-bindin 99.6 2.3E-14 4.9E-19 140.4 16.5 157 141-316 3-192 (594)
246 COG1162 Predicted GTPases [Gen 99.6 1.1E-15 2.4E-20 134.9 6.6 145 63-248 118-273 (301)
247 PLN03126 Elongation factor Tu; 99.6 3.5E-14 7.6E-19 135.7 16.3 148 136-301 78-248 (478)
248 cd01886 EF-G Elongation factor 99.6 3.4E-14 7.4E-19 126.6 14.6 141 141-299 1-159 (270)
249 cd04105 SR_beta Signal recogni 99.6 3.4E-14 7.3E-19 121.7 13.7 157 141-312 2-202 (203)
250 PF08477 Miro: Miro-like prote 99.6 2.7E-15 5.9E-20 117.0 6.4 115 141-268 1-119 (119)
251 cd01853 Toc34_like Toc34-like 99.6 9E-14 1.9E-18 122.2 16.6 138 132-272 24-164 (249)
252 PLN00023 GTP-binding protein; 99.6 1.7E-14 3.8E-19 129.5 11.5 140 136-289 18-189 (334)
253 cd04167 Snu114p Snu114p subfam 99.6 3.8E-14 8.3E-19 122.3 12.8 156 141-314 2-210 (213)
254 KOG0462 Elongation factor-type 99.6 3E-14 6.4E-19 132.7 12.8 161 138-317 59-237 (650)
255 PTZ00258 GTP-binding protein; 99.6 1.2E-13 2.6E-18 127.8 16.5 92 136-233 18-126 (390)
256 COG0532 InfB Translation initi 99.6 9.4E-14 2E-18 130.1 14.8 163 137-320 3-175 (509)
257 KOG1490 GTP-binding protein CR 99.5 1.8E-14 3.8E-19 132.9 9.6 176 136-317 165-343 (620)
258 PTZ00141 elongation factor 1- 99.5 8.8E-14 1.9E-18 132.4 14.6 151 137-305 5-203 (446)
259 cd01854 YjeQ_engC YjeQ/EngC. 99.5 6.1E-14 1.3E-18 126.2 12.6 165 44-249 77-271 (287)
260 PRK09435 membrane ATPase/prote 99.5 1.8E-13 3.9E-18 124.5 15.7 156 135-315 52-260 (332)
261 cd01885 EF2 EF2 (for archaea a 99.5 2.2E-13 4.7E-18 117.8 15.5 112 141-270 2-138 (222)
262 PRK10463 hydrogenase nickel in 99.5 6.3E-14 1.4E-18 124.3 12.1 188 116-313 79-287 (290)
263 KOG0076 GTP-binding ADP-ribosy 99.5 2.6E-14 5.7E-19 114.5 8.6 164 137-317 15-189 (197)
264 cd01859 MJ1464 MJ1464. This f 99.5 1E-13 2.2E-18 113.7 12.2 125 45-197 12-156 (156)
265 KOG1145 Mitochondrial translat 99.5 1.4E-13 3.1E-18 128.2 13.9 165 135-320 149-321 (683)
266 COG1703 ArgK Putative periplas 99.5 4.5E-14 9.8E-19 123.4 9.9 160 132-316 44-255 (323)
267 PRK12739 elongation factor G; 99.5 1.8E-13 4E-18 137.2 15.6 117 138-272 7-140 (691)
268 PRK00741 prfC peptide chain re 99.5 2.5E-13 5.5E-18 131.4 15.5 117 138-272 9-146 (526)
269 PRK00098 GTPase RsgA; Reviewed 99.5 1.8E-13 3.9E-18 123.9 12.6 164 44-248 79-273 (298)
270 PF04548 AIG1: AIG1 family; I 99.5 5.8E-13 1.3E-17 114.8 14.7 174 140-320 1-191 (212)
271 cd04170 EF-G_bact Elongation f 99.5 1.1E-13 2.4E-18 123.6 10.1 149 141-310 1-168 (268)
272 PTZ00327 eukaryotic translatio 99.5 3.6E-13 7.8E-18 127.9 13.9 163 137-316 32-234 (460)
273 KOG1532 GTPase XAB1, interacts 99.5 1.7E-13 3.7E-18 117.8 10.1 126 187-318 116-267 (366)
274 cd04169 RF3 RF3 subfamily. Pe 99.5 5.2E-13 1.1E-17 118.9 13.6 115 140-272 3-138 (267)
275 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.5E-17 113.0 16.2 140 136-301 36-182 (225)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.5 8.3E-13 1.8E-17 118.0 14.5 135 134-272 33-168 (313)
277 PRK00007 elongation factor G; 99.5 7E-13 1.5E-17 133.0 15.8 116 138-271 9-141 (693)
278 PRK13768 GTPase; Provisional 99.5 7.3E-13 1.6E-17 117.1 13.6 127 187-318 97-250 (253)
279 PF03193 DUF258: Protein of un 99.5 5.3E-14 1.2E-18 114.4 5.8 135 74-249 2-145 (161)
280 COG2229 Predicted GTPase [Gene 99.5 3.6E-12 7.8E-17 103.7 16.3 157 138-313 9-176 (187)
281 PF03308 ArgK: ArgK protein; 99.5 1.3E-13 2.8E-18 119.1 8.0 157 134-315 24-230 (266)
282 cd01855 YqeH YqeH. YqeH is an 99.5 5.3E-13 1.1E-17 113.1 11.7 123 44-197 33-190 (190)
283 KOG0071 GTP-binding ADP-ribosy 99.5 8.6E-13 1.9E-17 102.1 11.5 158 137-315 15-178 (180)
284 cd01850 CDC_Septin CDC/Septin. 99.5 2.3E-12 4.9E-17 115.3 16.0 128 138-272 3-158 (276)
285 PRK13351 elongation factor G; 99.5 8.4E-13 1.8E-17 132.7 14.2 117 138-272 7-140 (687)
286 PLN00043 elongation factor 1-a 99.5 1.2E-12 2.7E-17 124.5 14.3 152 137-305 5-203 (447)
287 TIGR00484 EF-G translation elo 99.4 1.5E-12 3.2E-17 130.8 15.4 144 138-300 9-171 (689)
288 KOG4252 GTP-binding protein [S 99.4 3.4E-14 7.4E-19 114.3 1.8 165 137-317 18-183 (246)
289 PRK09601 GTP-binding protein Y 99.4 8.1E-12 1.7E-16 114.5 16.8 88 140-233 3-107 (364)
290 COG5256 TEF1 Translation elong 99.4 3.3E-12 7.2E-17 116.2 13.8 153 137-306 5-202 (428)
291 KOG0072 GTP-binding ADP-ribosy 99.4 6.7E-13 1.5E-17 103.2 7.6 158 138-317 17-181 (182)
292 KOG3883 Ras family small GTPas 99.4 6.9E-12 1.5E-16 98.6 13.3 167 136-316 6-176 (198)
293 TIGR00101 ureG urease accessor 99.4 1.1E-11 2.3E-16 105.7 14.6 83 223-315 113-196 (199)
294 TIGR00503 prfC peptide chain r 99.4 3.5E-12 7.6E-17 123.5 12.6 117 137-271 9-146 (527)
295 COG0481 LepA Membrane GTPase L 99.4 2.4E-12 5.3E-17 118.3 10.8 157 141-317 11-188 (603)
296 PRK12740 elongation factor G; 99.4 6.6E-12 1.4E-16 126.0 13.8 110 145-272 1-127 (668)
297 PF05049 IIGP: Interferon-indu 99.4 2.7E-11 5.8E-16 111.1 16.2 166 136-318 32-221 (376)
298 TIGR00750 lao LAO/AO transport 99.4 1.1E-10 2.4E-15 105.9 19.6 157 134-315 29-238 (300)
299 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 2.3E-11 5E-16 105.3 14.2 168 141-317 1-178 (232)
300 PF03029 ATP_bind_1: Conserved 99.3 3.2E-12 6.9E-17 111.7 8.6 122 188-314 92-236 (238)
301 TIGR00073 hypB hydrogenase acc 99.3 2.2E-11 4.7E-16 104.7 13.5 57 258-314 149-206 (207)
302 COG0378 HypB Ni2+-binding GTPa 99.3 8.4E-12 1.8E-16 103.0 10.3 80 225-314 120-200 (202)
303 COG4917 EutP Ethanolamine util 99.3 1.4E-11 3E-16 93.8 10.1 142 141-313 3-144 (148)
304 TIGR02836 spore_IV_A stage IV 99.3 7.6E-11 1.6E-15 108.1 16.6 168 137-316 15-235 (492)
305 TIGR00993 3a0901s04IAP86 chlor 99.3 5.5E-11 1.2E-15 114.7 16.2 131 136-271 115-250 (763)
306 KOG1486 GTP-binding protein DR 99.3 8.4E-12 1.8E-16 106.2 8.8 165 137-315 60-288 (364)
307 PRK13796 GTPase YqeH; Provisio 99.3 2.1E-11 4.5E-16 113.4 12.1 106 63-200 104-223 (365)
308 KOG0074 GTP-binding ADP-ribosy 99.3 1.2E-11 2.5E-16 96.0 8.2 161 136-315 14-179 (185)
309 KOG1707 Predicted Ras related/ 99.3 9.7E-12 2.1E-16 117.1 8.7 162 135-315 5-175 (625)
310 KOG0077 Vesicle coat complex C 99.3 3.8E-11 8.2E-16 95.8 9.3 162 136-314 17-192 (193)
311 PRK14845 translation initiatio 99.2 1.5E-10 3.2E-15 118.7 15.9 146 150-314 472-672 (1049)
312 cd01900 YchF YchF subfamily. 99.2 2.8E-11 6.1E-16 107.5 9.1 86 142-233 1-103 (274)
313 TIGR03597 GTPase_YqeH ribosome 99.2 9.1E-11 2E-15 109.0 12.8 124 45-200 63-217 (360)
314 smart00053 DYNc Dynamin, GTPas 99.2 1.3E-09 2.7E-14 95.1 18.5 83 187-275 125-210 (240)
315 COG3276 SelB Selenocysteine-sp 99.2 2.1E-10 4.5E-15 105.3 13.8 157 141-315 2-162 (447)
316 PF00350 Dynamin_N: Dynamin fa 99.2 1.3E-10 2.8E-15 96.2 11.3 113 142-267 1-168 (168)
317 COG2895 CysN GTPases - Sulfate 99.2 1.1E-10 2.3E-15 104.1 11.2 151 137-304 4-192 (431)
318 KOG1487 GTP-binding protein DR 99.2 5.8E-11 1.3E-15 101.5 7.9 161 140-315 60-281 (358)
319 COG0012 Predicted GTPase, prob 99.2 3.3E-10 7.1E-15 102.6 12.9 90 139-234 2-109 (372)
320 KOG1673 Ras GTPases [General f 99.2 2.4E-10 5.2E-15 90.2 10.0 166 138-319 19-190 (205)
321 KOG1144 Translation initiation 99.2 2.8E-10 6.1E-15 109.5 12.0 162 137-316 473-688 (1064)
322 PTZ00416 elongation factor 2; 99.2 3.9E-10 8.5E-15 115.2 13.7 116 137-270 17-157 (836)
323 PF09439 SRPRB: Signal recogni 99.1 1.3E-10 2.7E-15 96.6 7.9 117 140-272 4-127 (181)
324 PRK07560 elongation factor EF- 99.1 5E-10 1.1E-14 113.2 13.7 117 137-271 18-153 (731)
325 KOG0458 Elongation factor 1 al 99.1 8.4E-10 1.8E-14 104.2 13.6 152 138-306 176-373 (603)
326 COG1217 TypA Predicted membran 99.1 2E-09 4.3E-14 99.2 15.1 159 140-317 6-197 (603)
327 TIGR00490 aEF-2 translation el 99.1 3.5E-10 7.6E-15 114.0 10.8 116 138-271 18-152 (720)
328 KOG2486 Predicted GTPase [Gene 99.1 5.2E-10 1.1E-14 96.9 9.3 170 136-314 133-315 (320)
329 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 3.6E-10 7.8E-15 92.2 7.8 161 138-316 9-170 (216)
330 KOG0090 Signal recognition par 99.1 3.2E-09 7E-14 88.5 13.5 161 139-314 38-238 (238)
331 COG5257 GCD11 Translation init 99.1 1.8E-09 4E-14 95.2 12.4 164 137-317 8-204 (415)
332 PLN00116 translation elongatio 99.1 1.3E-09 2.8E-14 111.6 12.9 117 136-270 16-163 (843)
333 PRK01889 GTPase RsgA; Reviewed 99.1 1.9E-10 4.1E-15 106.6 6.1 164 44-249 111-304 (356)
334 KOG4423 GTP-binding protein-li 99.0 3.1E-11 6.8E-16 98.0 -0.0 165 138-318 24-197 (229)
335 KOG0461 Selenocysteine-specifi 99.0 1.4E-08 3E-13 90.4 15.9 164 137-318 5-196 (522)
336 PF00735 Septin: Septin; Inte 99.0 4E-09 8.7E-14 94.5 12.8 128 139-273 4-158 (281)
337 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.3E-08 2.8E-13 83.5 9.9 93 216-314 2-94 (157)
338 KOG1954 Endocytosis/signaling 98.9 1.4E-08 3E-13 91.2 10.4 136 137-283 56-237 (532)
339 COG0050 TufB GTPases - transla 98.8 5.9E-08 1.3E-12 84.8 12.9 163 136-315 9-201 (394)
340 COG5019 CDC3 Septin family pro 98.8 1.7E-07 3.6E-12 84.7 15.9 130 137-273 21-178 (373)
341 KOG2655 Septin family protein 98.8 1.2E-07 2.5E-12 86.3 14.6 131 136-273 18-174 (366)
342 COG0480 FusA Translation elong 98.8 4.1E-08 9E-13 97.4 12.3 119 137-273 8-144 (697)
343 KOG3886 GTP-binding protein [S 98.8 3.4E-08 7.5E-13 83.4 8.3 125 140-273 5-132 (295)
344 TIGR00157 ribosome small subun 98.7 8.6E-08 1.9E-12 84.4 10.7 88 219-312 33-120 (245)
345 TIGR00092 GTP-binding protein 98.7 2.2E-08 4.7E-13 92.1 7.1 89 140-233 3-108 (368)
346 cd01855 YqeH YqeH. YqeH is an 98.7 9.3E-08 2E-12 80.9 10.0 89 219-315 31-125 (190)
347 TIGR01425 SRP54_euk signal rec 98.7 1.3E-06 2.8E-11 82.2 17.7 149 137-306 98-281 (429)
348 KOG1547 Septin CDC10 and relat 98.7 1.2E-06 2.7E-11 74.6 15.5 128 138-272 45-199 (336)
349 cd01851 GBP Guanylate-binding 98.7 1.8E-07 4E-12 81.2 10.5 92 138-233 6-102 (224)
350 cd01859 MJ1464 MJ1464. This f 98.7 1.9E-07 4E-12 76.4 9.9 88 220-316 10-97 (156)
351 cd01856 YlqF YlqF. Proteins o 98.7 2.9E-07 6.3E-12 76.6 11.2 96 208-314 5-100 (171)
352 TIGR03596 GTPase_YlqF ribosome 98.6 4.7E-07 1E-11 81.2 12.4 99 207-316 6-104 (276)
353 COG4108 PrfC Peptide chain rel 98.6 2.4E-07 5.2E-12 85.2 10.3 114 141-272 14-148 (528)
354 PRK10416 signal recognition pa 98.6 2.9E-06 6.4E-11 77.4 17.2 152 137-308 112-303 (318)
355 COG5192 BMS1 GTP-binding prote 98.6 5.3E-07 1.1E-11 85.2 12.3 141 135-299 65-210 (1077)
356 cd01849 YlqF_related_GTPase Yl 98.6 4.1E-07 8.9E-12 74.3 10.1 84 224-314 1-84 (155)
357 KOG1491 Predicted GTP-binding 98.6 9.7E-08 2.1E-12 85.1 6.2 91 137-234 18-126 (391)
358 PRK14974 cell division protein 98.5 9.9E-07 2.1E-11 80.8 12.2 152 137-309 138-324 (336)
359 TIGR00064 ftsY signal recognit 98.5 1.7E-05 3.7E-10 70.9 19.8 153 137-309 70-262 (272)
360 COG5258 GTPBP1 GTPase [General 98.5 1.4E-06 3E-11 79.0 12.2 162 135-314 113-338 (527)
361 KOG1707 Predicted Ras related/ 98.5 1.5E-06 3.2E-11 82.6 12.8 162 135-316 421-584 (625)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 7.8E-07 1.7E-11 71.5 9.3 82 214-302 3-84 (141)
363 PRK09563 rbgA GTPase YlqF; Rev 98.5 1.4E-06 3E-11 78.7 11.9 99 207-316 9-107 (287)
364 KOG3905 Dynein light intermedi 98.5 3.7E-06 7.9E-11 74.7 12.9 61 258-319 223-294 (473)
365 PRK14722 flhF flagellar biosyn 98.4 7.6E-06 1.6E-10 75.9 15.4 152 137-305 135-322 (374)
366 KOG0468 U5 snRNP-specific prot 98.4 1.8E-06 3.8E-11 83.1 10.6 118 135-270 124-262 (971)
367 smart00275 G_alpha G protein a 98.4 6.7E-06 1.4E-10 75.9 13.8 125 183-319 180-338 (342)
368 PRK00098 GTPase RsgA; Reviewed 98.4 2.4E-06 5.2E-11 77.5 10.0 86 220-311 78-163 (298)
369 PRK12289 GTPase RsgA; Reviewed 98.4 2.4E-06 5.2E-11 78.9 10.1 87 220-313 87-173 (352)
370 TIGR03597 GTPase_YqeH ribosome 98.4 3.9E-06 8.4E-11 78.2 11.5 93 213-313 53-151 (360)
371 PF00448 SRP54: SRP54-type pro 98.4 1.1E-06 2.4E-11 74.7 7.2 100 186-306 83-182 (196)
372 PF05783 DLIC: Dynein light in 98.4 3.4E-06 7.3E-11 80.5 11.2 62 258-320 197-269 (472)
373 COG0523 Putative GTPases (G3E 98.4 4.5E-06 9.8E-11 76.0 11.6 153 141-307 3-193 (323)
374 KOG0467 Translation elongation 98.4 1.4E-06 3.1E-11 84.8 8.7 113 138-268 8-135 (887)
375 smart00010 small_GTPase Small 98.4 6E-07 1.3E-11 69.8 5.1 115 140-304 1-115 (124)
376 cd00066 G-alpha G protein alph 98.3 1.1E-05 2.3E-10 73.9 13.6 126 182-319 156-315 (317)
377 PRK11889 flhF flagellar biosyn 98.3 8.5E-06 1.9E-10 75.4 12.4 148 138-306 240-419 (436)
378 PRK13796 GTPase YqeH; Provisio 98.3 6.9E-06 1.5E-10 76.6 11.8 95 212-314 58-158 (365)
379 PRK14721 flhF flagellar biosyn 98.3 1.5E-05 3.2E-10 75.1 13.9 149 138-307 190-370 (420)
380 cd03112 CobW_like The function 98.3 6.4E-06 1.4E-10 67.6 10.0 71 186-269 86-158 (158)
381 KOG0460 Mitochondrial translat 98.3 1.2E-05 2.6E-10 72.0 12.0 161 137-314 52-244 (449)
382 COG1419 FlhF Flagellar GTP-bin 98.3 1.5E-05 3.2E-10 73.7 12.5 146 139-305 203-379 (407)
383 KOG0448 Mitofusin 1 GTPase, in 98.3 1.6E-05 3.5E-10 77.0 13.2 122 136-272 106-276 (749)
384 PF02492 cobW: CobW/HypB/UreG, 98.3 8.4E-07 1.8E-11 74.3 3.9 139 141-293 2-177 (178)
385 cd01854 YjeQ_engC YjeQ/EngC. 98.3 5.9E-06 1.3E-10 74.5 9.6 87 219-312 75-161 (287)
386 PRK12726 flagellar biosynthesi 98.2 8.1E-05 1.8E-09 68.8 16.2 147 138-305 205-383 (407)
387 PRK14723 flhF flagellar biosyn 98.2 4.1E-05 8.8E-10 76.8 15.2 152 139-308 185-368 (767)
388 PRK12727 flagellar biosynthesi 98.2 8.1E-05 1.7E-09 71.6 16.1 148 137-306 348-527 (559)
389 PRK12288 GTPase RsgA; Reviewed 98.2 1.2E-05 2.7E-10 74.2 10.4 87 220-313 118-206 (347)
390 PRK00771 signal recognition pa 98.2 1.3E-05 2.8E-10 76.1 10.1 149 137-306 93-274 (437)
391 PRK06995 flhF flagellar biosyn 98.2 2.8E-05 6.1E-10 74.4 12.4 149 138-307 255-435 (484)
392 PRK11537 putative GTP-binding 98.1 1.8E-05 3.8E-10 72.4 10.5 94 187-296 91-186 (318)
393 TIGR03348 VI_IcmF type VI secr 98.1 4.9E-05 1.1E-09 81.0 15.3 131 139-274 111-260 (1169)
394 PRK12723 flagellar biosynthesi 98.1 0.0002 4.3E-09 67.0 17.5 151 138-308 173-357 (388)
395 KOG1143 Predicted translation 98.1 2.4E-05 5.1E-10 70.9 10.5 157 138-310 166-383 (591)
396 PF09547 Spore_IV_A: Stage IV 98.1 0.0002 4.4E-09 66.4 16.7 169 137-316 15-235 (492)
397 cd03114 ArgK-like The function 98.1 2.2E-05 4.8E-10 63.6 9.4 19 142-160 2-20 (148)
398 KOG1534 Putative transcription 98.1 1.7E-05 3.6E-10 66.5 8.4 122 186-314 97-250 (273)
399 PRK12724 flagellar biosynthesi 98.1 0.00014 3E-09 68.2 15.4 148 138-305 222-400 (432)
400 KOG0466 Translation initiation 98.1 1.4E-05 3.1E-10 70.4 7.7 164 136-316 35-242 (466)
401 KOG0465 Mitochondrial elongati 98.1 1.2E-05 2.7E-10 76.8 7.9 117 138-272 38-171 (721)
402 PRK05703 flhF flagellar biosyn 98.1 4.6E-05 1E-09 72.3 11.7 149 139-307 221-401 (424)
403 KOG1533 Predicted GTPase [Gene 98.1 1.5E-05 3.3E-10 67.8 7.4 82 187-272 97-178 (290)
404 COG0552 FtsY Signal recognitio 98.0 3.7E-05 8E-10 69.2 9.5 153 136-308 136-328 (340)
405 PRK10867 signal recognition pa 98.0 0.00045 9.7E-09 65.6 16.5 101 186-307 183-283 (433)
406 KOG0082 G-protein alpha subuni 98.0 0.00016 3.5E-09 66.1 12.9 128 181-320 189-349 (354)
407 PRK06731 flhF flagellar biosyn 97.9 0.00044 9.4E-09 61.6 15.0 147 138-305 74-252 (270)
408 KOG0464 Elongation factor G [T 97.9 6.6E-06 1.4E-10 75.3 2.8 116 139-272 37-169 (753)
409 PRK01889 GTPase RsgA; Reviewed 97.9 9.3E-05 2E-09 68.8 10.3 84 220-311 110-193 (356)
410 TIGR02475 CobW cobalamin biosy 97.9 0.00021 4.5E-09 66.0 12.5 108 187-308 93-223 (341)
411 KOG0447 Dynamin-like GTP bindi 97.9 0.0025 5.5E-08 60.7 19.5 132 136-272 305-494 (980)
412 TIGR00959 ffh signal recogniti 97.9 0.0001 2.2E-09 69.8 10.5 100 186-306 182-281 (428)
413 COG1618 Predicted nucleotide k 97.8 0.0017 3.7E-08 52.5 15.2 80 220-316 98-177 (179)
414 KOG2743 Cobalamin synthesis pr 97.7 0.00011 2.4E-09 64.9 7.5 136 138-286 56-239 (391)
415 cd03115 SRP The signal recogni 97.7 0.0021 4.5E-08 53.3 14.8 76 186-275 82-157 (173)
416 KOG0780 Signal recognition par 97.7 0.0002 4.4E-09 65.3 8.6 123 133-271 95-254 (483)
417 COG3523 IcmF Type VI protein s 97.7 0.00028 6E-09 73.8 10.8 161 139-306 125-305 (1188)
418 KOG0463 GTP-binding protein GP 97.7 0.00042 9.2E-09 63.0 10.5 155 139-310 133-353 (641)
419 cd04178 Nucleostemin_like Nucl 97.6 0.00028 6E-09 58.7 8.4 58 224-286 1-58 (172)
420 KOG3859 Septins (P-loop GTPase 97.6 0.00018 3.9E-09 62.9 7.0 129 138-272 41-191 (406)
421 COG3640 CooC CO dehydrogenase 97.5 0.00036 7.8E-09 59.8 7.8 45 221-270 154-198 (255)
422 KOG0459 Polypeptide release fa 97.5 0.00038 8.2E-09 63.9 7.8 156 136-308 76-279 (501)
423 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00034 7.3E-09 46.3 5.2 47 221-268 12-58 (58)
424 KOG3887 Predicted small GTPase 97.4 0.001 2.2E-08 57.1 8.9 161 140-316 28-203 (347)
425 PF00503 G-alpha: G-protein al 97.4 0.0011 2.4E-08 62.6 10.2 120 182-313 230-388 (389)
426 KOG0781 Signal recognition par 97.4 0.0023 5E-08 60.1 11.7 81 185-272 465-545 (587)
427 KOG2484 GTPase [General functi 97.3 0.0015 3.2E-08 60.1 9.0 83 210-298 134-216 (435)
428 cd02038 FleN-like FleN is a me 97.2 0.0037 8E-08 49.9 10.0 101 143-270 4-110 (139)
429 PRK13695 putative NTPase; Prov 97.2 0.01 2.2E-07 49.3 12.6 82 218-315 92-173 (174)
430 cd03110 Fer4_NifH_child This p 97.1 0.0096 2.1E-07 49.5 12.1 67 185-271 91-157 (179)
431 cd03111 CpaE_like This protein 97.1 0.0038 8.2E-08 47.4 8.6 97 142-266 2-106 (106)
432 cd02042 ParA ParA and ParB of 97.1 0.0041 8.9E-08 46.8 8.4 64 142-233 2-72 (104)
433 cd02036 MinD Bacterial cell di 97.0 0.012 2.6E-07 48.6 11.7 109 144-271 5-128 (179)
434 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.0064 1.4E-07 44.4 8.7 69 142-234 2-70 (99)
435 COG1162 Predicted GTPases [Gen 97.0 0.0074 1.6E-07 54.1 10.3 88 221-313 78-165 (301)
436 PF00004 AAA: ATPase family as 97.0 0.005 1.1E-07 48.0 8.5 21 142-162 1-21 (132)
437 COG0194 Gmk Guanylate kinase [ 97.0 0.00044 9.4E-09 57.3 2.3 53 138-193 3-55 (191)
438 KOG1424 Predicted GTP-binding 97.0 0.0033 7.2E-08 59.6 8.1 83 210-299 162-244 (562)
439 COG0541 Ffh Signal recognition 96.9 0.012 2.6E-07 55.1 11.5 123 136-272 97-254 (451)
440 KOG0469 Elongation factor 2 [T 96.9 0.003 6.6E-08 59.6 7.0 116 137-270 17-163 (842)
441 PRK14737 gmk guanylate kinase; 96.8 0.001 2.2E-08 56.0 3.5 40 138-177 3-42 (186)
442 KOG2423 Nucleolar GTPase [Gene 96.8 0.009 1.9E-07 55.0 9.6 98 214-317 205-302 (572)
443 COG1161 Predicted GTPases [Gen 96.8 0.0085 1.8E-07 55.0 9.4 86 213-308 25-110 (322)
444 PF13207 AAA_17: AAA domain; P 96.8 0.0011 2.4E-08 51.3 3.1 22 141-162 1-22 (121)
445 PRK14738 gmk guanylate kinase; 96.7 0.0015 3.2E-08 56.0 3.5 26 137-162 11-36 (206)
446 PF05621 TniB: Bacterial TniB 96.7 0.026 5.6E-07 50.7 11.4 118 134-266 56-189 (302)
447 PF13401 AAA_22: AAA domain; P 96.6 0.0017 3.8E-08 50.8 3.3 23 141-163 6-28 (131)
448 PHA02518 ParA-like protein; Pr 96.6 0.027 5.9E-07 47.9 10.7 70 186-270 76-146 (211)
449 COG1136 SalX ABC-type antimicr 96.6 0.0017 3.6E-08 56.1 3.1 29 137-165 29-57 (226)
450 KOG0705 GTPase-activating prot 96.6 0.0076 1.7E-07 57.6 7.5 158 138-316 29-190 (749)
451 COG1116 TauB ABC-type nitrate/ 96.6 0.0018 4E-08 56.2 3.1 27 138-164 28-54 (248)
452 TIGR03263 guanyl_kin guanylate 96.6 0.0016 3.5E-08 54.3 2.7 23 141-163 3-25 (180)
453 PF03266 NTPase_1: NTPase; In 96.5 0.032 7E-07 46.1 10.3 65 227-303 98-163 (168)
454 KOG0446 Vacuolar sorting prote 96.5 0.0017 3.6E-08 64.8 3.0 82 187-272 132-214 (657)
455 COG3840 ThiQ ABC-type thiamine 96.5 0.002 4.4E-08 53.3 2.9 27 138-164 24-50 (231)
456 PF13555 AAA_29: P-loop contai 96.5 0.0025 5.4E-08 43.2 2.9 20 141-160 25-44 (62)
457 PF07015 VirC1: VirC1 protein; 96.5 0.015 3.2E-07 50.2 8.2 105 186-308 83-187 (231)
458 cd00071 GMPK Guanosine monopho 96.4 0.0033 7.1E-08 50.2 3.6 21 142-162 2-22 (137)
459 KOG0085 G protein subunit Galp 96.4 0.015 3.3E-07 49.8 7.6 67 253-319 262-353 (359)
460 PF00005 ABC_tran: ABC transpo 96.4 0.0031 6.7E-08 49.9 3.1 27 138-164 10-36 (137)
461 cd00009 AAA The AAA+ (ATPases 96.3 0.039 8.5E-07 43.2 9.3 24 139-162 19-42 (151)
462 PRK07261 topology modulation p 96.3 0.0034 7.3E-08 52.1 3.1 21 141-161 2-22 (171)
463 COG1341 Predicted GTPase or GT 96.2 0.024 5.3E-07 52.6 8.6 26 135-160 69-94 (398)
464 PRK00300 gmk guanylate kinase; 96.2 0.0046 9.9E-08 52.7 3.7 25 138-162 4-28 (205)
465 TIGR00235 udk uridine kinase. 96.2 0.0038 8.3E-08 53.4 3.2 26 137-162 4-29 (207)
466 PF13671 AAA_33: AAA domain; P 96.2 0.0036 7.7E-08 49.9 2.8 20 142-161 2-21 (143)
467 cd02019 NK Nucleoside/nucleoti 96.2 0.0045 9.7E-08 43.1 2.9 21 142-162 2-22 (69)
468 PRK08118 topology modulation p 96.2 0.0041 8.8E-08 51.4 3.1 21 141-161 3-23 (167)
469 PF13521 AAA_28: AAA domain; P 96.2 0.0031 6.6E-08 51.8 2.3 22 141-162 1-22 (163)
470 COG0563 Adk Adenylate kinase a 96.2 0.0042 9E-08 51.9 3.0 22 141-162 2-23 (178)
471 COG1126 GlnQ ABC-type polar am 96.2 0.0047 1E-07 52.5 3.3 28 137-164 26-53 (240)
472 cd01130 VirB11-like_ATPase Typ 96.2 0.0062 1.3E-07 51.2 4.1 26 137-162 23-48 (186)
473 PF13238 AAA_18: AAA domain; P 96.1 0.0044 9.5E-08 48.2 2.7 21 142-162 1-21 (129)
474 KOG2749 mRNA cleavage and poly 96.1 0.06 1.3E-06 49.1 10.1 27 135-161 99-125 (415)
475 PRK09270 nucleoside triphospha 96.1 0.012 2.7E-07 51.1 5.7 27 136-162 30-56 (229)
476 PRK08233 hypothetical protein; 96.0 0.0061 1.3E-07 50.7 3.4 24 139-162 3-26 (182)
477 PRK05480 uridine/cytidine kina 96.0 0.0056 1.2E-07 52.4 3.2 26 137-162 4-29 (209)
478 PRK10078 ribose 1,5-bisphospho 95.9 0.0064 1.4E-07 51.1 3.2 22 141-162 4-25 (186)
479 COG4088 Predicted nucleotide k 95.9 0.19 4E-06 42.7 11.6 21 141-161 3-23 (261)
480 cd02117 NifH_like This family 95.9 0.095 2.1E-06 44.9 10.3 48 222-270 141-188 (212)
481 TIGR02322 phosphon_PhnN phosph 95.9 0.0066 1.4E-07 50.5 2.9 22 141-162 3-24 (179)
482 cd03222 ABC_RNaseL_inhibitor T 95.9 0.0075 1.6E-07 50.3 3.2 27 137-163 23-49 (177)
483 PRK13849 putative crown gall t 95.9 0.057 1.2E-06 47.1 8.9 70 185-268 82-151 (231)
484 smart00382 AAA ATPases associa 95.9 0.0078 1.7E-07 46.8 3.2 23 140-162 3-25 (148)
485 cd03264 ABC_drug_resistance_li 95.8 0.0073 1.6E-07 51.7 3.1 25 138-163 25-49 (211)
486 cd02023 UMPK Uridine monophosp 95.8 0.0064 1.4E-07 51.6 2.6 21 142-162 2-22 (198)
487 PRK10751 molybdopterin-guanine 95.8 0.0089 1.9E-07 49.6 3.3 25 138-162 5-29 (173)
488 KOG4273 Uncharacterized conser 95.8 0.053 1.2E-06 47.0 8.1 122 140-278 5-130 (418)
489 cd03238 ABC_UvrA The excision 95.8 0.0088 1.9E-07 49.9 3.3 25 137-161 19-43 (176)
490 COG1936 Predicted nucleotide k 95.8 0.0076 1.6E-07 49.4 2.8 20 141-160 2-21 (180)
491 cd03225 ABC_cobalt_CbiO_domain 95.7 0.0094 2E-07 51.0 3.4 27 137-163 25-51 (211)
492 PF03205 MobB: Molybdopterin g 95.7 0.0079 1.7E-07 48.2 2.7 21 141-161 2-22 (140)
493 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.0094 2E-07 51.3 3.4 27 137-163 28-54 (218)
494 PF02263 GBP: Guanylate-bindin 95.7 0.064 1.4E-06 47.7 8.7 63 137-199 19-86 (260)
495 TIGR01166 cbiO cobalt transpor 95.7 0.009 2E-07 50.3 3.2 26 138-163 17-42 (190)
496 COG3839 MalK ABC-type sugar tr 95.7 0.008 1.7E-07 55.0 3.0 24 140-163 30-53 (338)
497 TIGR00960 3a0501s02 Type II (G 95.7 0.0095 2.1E-07 51.2 3.4 27 137-163 27-53 (216)
498 cd00820 PEPCK_HprK Phosphoenol 95.7 0.0097 2.1E-07 45.2 2.9 22 139-160 15-36 (107)
499 cd03261 ABC_Org_Solvent_Resist 95.7 0.0099 2.1E-07 51.8 3.4 27 137-163 24-50 (235)
500 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0098 2.1E-07 49.7 3.2 21 140-160 4-24 (188)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=201.35 Aligned_cols=171 Identities=32% Similarity=0.450 Sum_probs=148.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+...|+++|.||||||||+|+|.|.+++.+++.+.||+....++...++..+.|+||||+..+.. .....+.+.++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~----~l~~~m~~~a~ 80 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH----ALGELMNKAAR 80 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch----HHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999998744 44566788888
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|+..+.+..+..+.+.++. ...|+++++||+|..++..........+.....+..++++||
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhh------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 89999999999999988888877766666665 145799999999999876655677777777778889999999
Q ss_pred CCCCCHHHHHHHHHHHhhhcC
Q 020714 298 LKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~~~ 318 (322)
++|.|++.|.+.+...+.+.-
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCC
Confidence 999999999999999988753
No 2
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.95 E-value=5.6e-27 Score=215.77 Aligned_cols=245 Identities=21% Similarity=0.338 Sum_probs=163.1
Q ss_pred ccCCCCCCCCCCCCCCCCChhhHHHHHHhhCCeE--EEeec--cccchhhhhH---------------------------
Q 020714 54 YFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQ--------------------------- 102 (322)
Q Consensus 54 da~~p~~~~~k~dl~~~~~~~~w~~~~~~~~~~i--~f~~~--~~~~~~~~~~--------------------------- 102 (322)
++...++.++..+.|.++.++.|...+.+++..| ||... +.+++.++--
T Consensus 66 ~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~ 145 (351)
T TIGR03156 66 EADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTR 145 (351)
T ss_pred CCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCC
Confidence 4444444456667788888999998888888887 77776 7777777600
Q ss_pred --HH-HHHHHHHHH--HHHHHHHHHHhhHHHHHHhhhhc--cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee
Q 020714 103 --EE-EEERKHRAL--AKALLQAALERQEEEEEEVKEED--QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT 175 (322)
Q Consensus 103 --~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~--~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~ 175 (322)
.+ ..+...+.+ ....+...++.....+...+..+ ...++|+++|+||||||||+|+|++.. ..+...+++|.
T Consensus 146 g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~ 224 (351)
T TIGR03156 146 GPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATL 224 (351)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCcccc
Confidence 01 011111212 11222222222222222222222 456899999999999999999999987 45567778888
Q ss_pred eeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhccc
Q 020714 176 HEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQ 253 (322)
Q Consensus 176 ~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~ 253 (322)
+.....+.. ++..+.||||||+....+ +...+.+..++..+..+|++++|+|++++...... .+..++..+..
T Consensus 225 d~~~~~i~~~~~~~i~l~DT~G~~~~l~----~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~- 299 (351)
T TIGR03156 225 DPTTRRLDLPDGGEVLLTDTVGFIRDLP----HELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA- 299 (351)
T ss_pred CCEEEEEEeCCCceEEEEecCcccccCC----HHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-
Confidence 877666655 577999999999954322 34445588888889999999999999876443322 33455555543
Q ss_pred CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 254 ~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
.+.|+++|+||+|+..... .. .... ...+++++||++|.|+++++++|.+.
T Consensus 300 --~~~piIlV~NK~Dl~~~~~-v~----~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 300 --EDIPQLLVYNKIDLLDEPR-IE----RLEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred --CCCCEEEEEEeecCCChHh-HH----HHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 2568999999999975322 11 1111 12358999999999999999999765
No 3
>PRK11058 GTPase HflX; Provisional
Probab=99.94 E-value=6.3e-26 Score=213.36 Aligned_cols=245 Identities=22% Similarity=0.304 Sum_probs=161.3
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHhhCCeE--EEeec--cccchhhh------------------hH-----------HH-
Q 020714 59 TIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRI------------------FQ-----------EE- 104 (322)
Q Consensus 59 ~~~~~k~dl~~~~~~~~w~~~~~~~~~~i--~f~~~--~~~~~~~~------------------~~-----------~~- 104 (322)
++.+...+.|.++.++.|...+.+++..| ||... +.+++.|+ +. .+
T Consensus 79 i~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~ 158 (426)
T PRK11058 79 LFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGET 158 (426)
T ss_pred EECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChh
Confidence 33344555677888888988888888887 77776 88888877 00 01
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhHHHHHHhh--hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE
Q 020714 105 EEERKHRALA--KALLQAALERQEEEEEEVK--EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG 180 (322)
Q Consensus 105 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~--~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~ 180 (322)
..+...+.+. ...+...++.....+...+ ......++|+++|+||||||||+|+|++.++. +...+++|.+....
T Consensus 159 ~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~ 237 (426)
T PRK11058 159 QLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLR 237 (426)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceE
Confidence 1122222221 2222222222222222222 12223468999999999999999999998765 66778888887766
Q ss_pred EEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCC
Q 020714 181 VMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQ 258 (322)
Q Consensus 181 ~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~ 258 (322)
.+...+ ..+.+|||||+.... + +.....|..++..+..+|++++|+|++++...... .+..++..+... +.
T Consensus 238 ~i~l~~~~~~~l~DTaG~~r~l---p-~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~ 310 (426)
T PRK11058 238 RIDVADVGETVLADTVGFIRHL---P-HDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH---EI 310 (426)
T ss_pred EEEeCCCCeEEEEecCcccccC---C-HHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC---CC
Confidence 555444 488999999995432 2 33345588888889999999999999875433332 244566666533 57
Q ss_pred cEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 259 p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
|+++|+||+|+........ ... ..+.+.++++||++|.|+++|+++|.+.+..
T Consensus 311 pvIiV~NKiDL~~~~~~~~---~~~--~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 311 PTLLVMNKIDMLDDFEPRI---DRD--EENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CEEEEEEcccCCCchhHHH---HHH--hcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 8999999999975321111 111 1233335899999999999999999998854
No 4
>COG2262 HflX GTPases [General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=207.08 Aligned_cols=252 Identities=20% Similarity=0.298 Sum_probs=178.8
Q ss_pred EccccCCCCCCCCCCCCCCCCChhhHHHHHHhhCCeE--EEeec--cccchhhh------------------hH------
Q 020714 51 DSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRI------------------FQ------ 102 (322)
Q Consensus 51 ~~~da~~p~~~~~k~dl~~~~~~~~w~~~~~~~~~~i--~f~~~--~~~~~~~~------------------~~------ 102 (322)
+..++...++.+...+.+..+..+.|...+.++...| ||... +.+++.|+ ++
T Consensus 66 ~~~~ad~VIf~~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~Gggi 145 (411)
T COG2262 66 EETGADLVIFDHELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGI 145 (411)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCC
Confidence 3344555555556666777888888888888888887 77776 88888877 11
Q ss_pred ------HHHHHHHHHHH--HHHHHHHHHHhhHHHHHHhhh--hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC
Q 020714 103 ------EEEEERKHRAL--AKALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172 (322)
Q Consensus 103 ------~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~ 172 (322)
+...+..++.+ ....++..++..+..++..+. .....+.|+++|++|+|||||+|+|++..... .+...
T Consensus 146 G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~-~d~LF 224 (411)
T COG2262 146 GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYV-ADQLF 224 (411)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeec-ccccc
Confidence 11123333333 333445555555554444443 34567899999999999999999999876543 44455
Q ss_pred ceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHh
Q 020714 173 TTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERM 250 (322)
Q Consensus 173 ~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~ 250 (322)
.|.+++...+.. ++..+.+.||.||+...+ +.+...|++++++...+|++++|+|++++..... ..+...+.++
T Consensus 225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP----~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el 300 (411)
T COG2262 225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLP----HPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI 300 (411)
T ss_pred ccccCceeEEEeCCCceEEEecCccCcccCC----hHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc
Confidence 555555554444 478999999999998766 7778889999999999999999999988733222 2566777777
Q ss_pred cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 251 ~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+.. ..|+|+|+||+|+...... ........+ ..+++||++|.|++.|.+.|.+.+..
T Consensus 301 ~~~---~~p~i~v~NKiD~~~~~~~----~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 301 GAD---EIPIILVLNKIDLLEDEEI----LAELERGSP--NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CCC---CCCEEEEEecccccCchhh----hhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 755 4779999999998865431 122222222 58999999999999999999998874
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=7.5e-25 Score=200.77 Aligned_cols=248 Identities=26% Similarity=0.309 Sum_probs=180.2
Q ss_pred CCceEEEccccCCCCCC-C------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714 45 DCDSVFDSSYFRIPTID-D------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE 104 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-~------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~ 104 (322)
-+|+++=+.|++.-+.. . ||+|-. ........+|.--...++..|+ .+.|...++
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl--- 157 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGFGEPVPISAEHGRGIGDLL--- 157 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCCCCceEeehhhccCHHHHH---
Confidence 49999999999885544 2 777755 2222333344333344555555 777777662
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEE
Q 020714 105 EEERKHRALAKALLQAALER--QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM 182 (322)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~ 182 (322)
+..++. ..++. .......+++|+++|-||||||||+|+|++.+...+++.+|||++.....+
T Consensus 158 --------------d~v~~~l~~~e~~--~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~ 221 (444)
T COG1160 158 --------------DAVLELLPPDEEE--EEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEF 221 (444)
T ss_pred --------------HHHHhhcCCcccc--cccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeE
Confidence 222222 11100 001114689999999999999999999999999999999999999999999
Q ss_pred eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (322)
Q Consensus 183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv 262 (322)
..++..+.++||+|+.....-.. ....-.+.+++..+..+|++++|+|++.+.++++..+..++.+.+. ++++
T Consensus 222 e~~~~~~~liDTAGiRrk~ki~e-~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~------~~vI 294 (444)
T COG1160 222 ERDGRKYVLIDTAGIRRKGKITE-SVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGR------GIVI 294 (444)
T ss_pred EECCeEEEEEECCCCCccccccc-ceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCC------CeEE
Confidence 99999999999999975543222 1223356777888899999999999999999999888887777664 4999
Q ss_pred EEeCCCCCCCh-hHH---HHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 263 CMNKVDLVTKK-KDL---LKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 263 V~NK~Dl~~~~-~~~---~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
|+||+|+.... ... ...........++.+++++||++|.|+.++++.+......+..+
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence 99999998753 222 22333333445667899999999999999999999988776544
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.9e-24 Score=193.20 Aligned_cols=167 Identities=27% Similarity=0.406 Sum_probs=125.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.||||||||+|+|++.+...+++.+++|+....+....++..+.|+||||+..... .........+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~----~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH----SLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc----hHHHHHHHHHHHHH
Confidence 58999999999999999999999888999999999887777666777899999999975422 22223344556677
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..+|++++|+|++...+.. ..+...+.. . +.|+++|+||+|+... .........+....++.+++++||++|
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~---~---~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~v~~iSA~~g 149 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQN---L---KRPVVLTRNKLDNKFK-DKLLPLIDKYAILEDFKDIVPISALTG 149 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHh---c---CCCEEEEEECeeCCCH-HHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 8999999999997654332 223333322 2 4679999999999753 333334444544455557999999999
Q ss_pred CCHHHHHHHHHHHhhhcCC
Q 020714 301 AGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~~~~ 319 (322)
.|+++|+++|.+.+....+
T Consensus 150 ~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCHHHHHHHHHHhCCCCCC
Confidence 9999999999999877544
No 7
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1e-23 Score=202.33 Aligned_cols=248 Identities=19% Similarity=0.208 Sum_probs=160.7
Q ss_pred CCceEEEccccCCC------------------CCC-CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714 45 DCDSVFDSSYFRIP------------------TID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE 104 (322)
Q Consensus 45 ~~d~v~~~~da~~p------------------~~~-~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~ 104 (322)
.+|+++-+.|++.. ++. -||+|+...+. .....+.......++.|+ ++.|..++++..
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i 194 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLDAV 194 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHHHH
Confidence 58988888888754 333 38999864322 122222222223467887 888888774322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714 105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184 (322)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~ 184 (322)
.+...+..+ . .......++|+++|.||||||||+|+|++.....++..+|+|++.....+..
T Consensus 195 -------------~~~l~~~~~-~----~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~ 256 (472)
T PRK03003 195 -------------LAALPEVPR-V----GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL 256 (472)
T ss_pred -------------Hhhcccccc-c----ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE
Confidence 111111000 0 0112346899999999999999999999988777788899998877666667
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..+.||||||+........... .....++...+..+|++++|+|++++.+.++..+...+. . .+.|+|+|+
T Consensus 257 ~~~~~~l~DTaG~~~~~~~~~~~e-~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~---~---~~~piIiV~ 329 (472)
T PRK03003 257 GGKTWRFVDTAGLRRRVKQASGHE-YYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVI---E---AGRALVLAF 329 (472)
T ss_pred CCEEEEEEECCCccccccccchHH-HHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHH---H---cCCCEEEEE
Confidence 788899999999864322111011 111123344578899999999998876665544333332 2 256899999
Q ss_pred eCCCCCCChh--HHH-HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 265 NKVDLVTKKK--DLL-KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 265 NK~Dl~~~~~--~~~-~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
||+|+..... ... +....+.. ....+++++||++|.|++++|+.|.+.+..+..+
T Consensus 330 NK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 330 NKWDLVDEDRRYYLEREIDRELAQ-VPWAPRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred ECcccCChhHHHHHHHHHHHhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999975321 111 12222322 2334799999999999999999999988766544
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=195.92 Aligned_cols=166 Identities=27% Similarity=0.350 Sum_probs=136.4
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..+.+++++++|.||||||||+|+|++.+.+.++..+|||++.....+..+|.++.++||+|+.+... ...+.+++
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d----~VE~iGIe 288 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD----VVERIGIE 288 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc----HHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999986543 44577999
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
+++..+..||++++|+|.+.+....+..... ....++|+++|+||+|+....... . + ......+++.
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~-~----~-~~~~~~~~i~ 355 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELE-S----E-KLANGDAIIS 355 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccc-h----h-hccCCCceEE
Confidence 9999999999999999998765555544333 122357899999999998753311 1 1 1122225899
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|+|++.|.+.|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999999988654
No 9
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=2.2e-23 Score=198.51 Aligned_cols=246 Identities=21% Similarity=0.271 Sum_probs=164.7
Q ss_pred CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhC-CeEEEeec-cccchhhhhHH
Q 020714 45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQE 103 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~-~~i~f~~~-~~~~~~~~~~~ 103 (322)
.+|+++-+.|++.+... -||+|+...+.. ....+ ..+ ..++..++ ++.|...+++.
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCCCCeEEEeCCcCCChHHHHHH
Confidence 58888888888654332 289998765432 12222 333 35677777 77777666322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT 183 (322)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~ 183 (322)
. ...+..... ........++|+++|.+|+|||||+|+|++.....++..+++|.+.....+.
T Consensus 155 i--------------~~~l~~~~~----~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~ 216 (429)
T TIGR03594 155 I--------------LELLPEEEE----EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE 216 (429)
T ss_pred H--------------HHhcCcccc----cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE
Confidence 1 111111000 0112235689999999999999999999998877788889999988777676
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..+.+|||||+........ ........+++..+..+|++++|+|++++.+.++..+...+.. . +.|+++|
T Consensus 217 ~~~~~~~liDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~---~---~~~iiiv 289 (429)
T TIGR03594 217 RNGKKYLLIDTAGIRRKGKVTE-GVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILE---A---GKALVIV 289 (429)
T ss_pred ECCcEEEEEECCCccccccchh-hHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---c---CCcEEEE
Confidence 7788999999999975543211 1112233455667889999999999988776665544443332 2 4679999
Q ss_pred EeCCCCCCChhHHHHHHHHHhcC---CCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 264 MNKVDLVTKKKDLLKVAEQFKHL---PGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+||+|+.............+... .+..+++++||++|.|++++++++.+.+..+.
T Consensus 290 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 290 VNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999983333333333333222 23357999999999999999999999877653
No 10
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-24 Score=176.51 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=134.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...+|++++|..|||||||+-++..+.+... .++.|....+....+......+.+|||+|++.+....+
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap---------- 72 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP---------- 72 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc----------
Confidence 3568999999999999999999988876653 45555554444444444457888999999998765333
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
.++++|+++|+|||+++.. .......|++++.....++.-+.+|+||+||...+.+..+....+++..+.. ++++
T Consensus 73 --MYyRgA~AAivvYDit~~~--SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ET 147 (200)
T KOG0092|consen 73 --MYYRGANAAIVVYDITDEE--SFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFET 147 (200)
T ss_pred --ceecCCcEEEEEEecccHH--HHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEE
Confidence 5789999999999997643 3346788999999887777778899999999987777777788888888874 9999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcC
Q 020714 296 SGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~~ 318 (322)
|||+|.|++++|..|.+.+....
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 148 SAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ecccccCHHHHHHHHHHhccCcc
Confidence 99999999999999999988753
No 11
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=175.98 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=135.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....+||+++|.+|||||+|+-++....+.. ...+.|+........+......+++|||+|+++|..
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt------------ 73 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT------------ 73 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh------------
Confidence 3457999999999999999999999877653 333444444333333333455789999999987642
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.+..+++.|++||+|||++...++ ..+..|+.++......++|.++|+||+|+.....+..+....|+...+.+.+++
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF--~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESF--NNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLE 151 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHh--hhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceee
Confidence 233578999999999999875555 357889999998888889999999999999888777788889999888877999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcC
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+|||++.|+++.|..|...++.+.
T Consensus 152 TSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 152 TSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cccCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 12
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=1.2e-23 Score=193.30 Aligned_cols=171 Identities=27% Similarity=0.475 Sum_probs=127.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.||||||||+|+|++..+..+++.+++|++...+.+...+..+.||||||+..+.. .....+.+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~----~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG----SLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc----cHHHHHHHHH
Confidence 346789999999999999999999998888888999998877777777788999999999975432 2223456666
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
+..+..+|++++|+|.+......+.. ++..+... +.|.++|+||+|+... ...+....+.......+++++|
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~---il~~l~~~---~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHN---ILDKLRSL---NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHH---HHHHHHhc---CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEe
Confidence 77788999999999986644433323 33333322 3467889999999653 2333334444444445799999
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCC
Q 020714 297 GLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~~~~ 319 (322)
|++|.|+++++++|.+.+.+..+
T Consensus 198 Aktg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred ccCccCHHHHHHHHHHhCCCCCC
Confidence 99999999999999998877544
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=9.1e-24 Score=193.67 Aligned_cols=161 Identities=25% Similarity=0.400 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
..|+++|-||||||||.|+|++.+.+.++..||+|++.........+..+.++||+|+..... .........+++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~---~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE---DELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc---hHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999999999998888899999999999985432 13445567788888
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..||++|+|+|...+.+..+..+..+|... .+|+++|+||+|-...+ ....++.. .|+.+++++||..
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvvNK~D~~~~e----~~~~efys-lG~g~~~~ISA~H 149 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRS------KKPVILVVNKIDNLKAE----ELAYEFYS-LGFGEPVPISAEH 149 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEEcccCchhh----hhHHHHHh-cCCCCceEeehhh
Confidence 9999999999999999999998888888842 36799999999976332 22333433 4677899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 020714 300 GAGLKALTQYLMEQF 314 (322)
Q Consensus 300 g~gi~el~~~i~~~l 314 (322)
|.|+.+|++++...+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999997
No 14
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=3.3e-23 Score=187.42 Aligned_cols=171 Identities=32% Similarity=0.524 Sum_probs=131.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+...|+++|.||||||||+|+|++.+...+++.+++|+....+....++..+.++||||+..... .........++
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----ALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh----HHHHHHHHHHH
Confidence 34568999999999999999999999988999999999887777666667999999999975432 11222344555
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|+++..+..+..+...+. . .+.|+++|+||+|+.............+....+..+++++||
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~---~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLK---K---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHh---h---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 6778899999999997754444433333333 2 246899999999998554555556666666566678999999
Q ss_pred CCCCCHHHHHHHHHHHhhhcC
Q 020714 298 LKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~~~ 318 (322)
++|.|+++++++|.+.+....
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999987643
No 15
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.91 E-value=8.7e-24 Score=183.13 Aligned_cols=184 Identities=41% Similarity=0.611 Sum_probs=149.4
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
++..+.+.|+++|.||||||||.|.+.|.+++.++....||+....+++..+...+.|+||||+.........+......
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999887766666666666
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH----------------H
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL----------------L 277 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~----------------~ 277 (322)
...+..+..||++++++|+++.-..-...+...++.+. ..|-++|+||+|........ .
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 77788899999999999998643444446777777766 46789999999988653211 1
Q ss_pred HHHHHHhc------------CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCcCC
Q 020714 278 KVAEQFKH------------LPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLKIH 322 (322)
Q Consensus 278 ~~~~~~~~------------~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~~h 322 (322)
++.+.+.. +..+..+|++||++|.||+++-++|...+...-++||
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~ 278 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP 278 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence 22333332 2235569999999999999999999999998888775
No 16
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-22 Score=193.76 Aligned_cols=244 Identities=22% Similarity=0.282 Sum_probs=162.8
Q ss_pred CCceEEEccccCCCCC------------------C-CCCCCCCCCCChhhHHHHHHhhC-CeEEEeec-cccchhhhhHH
Q 020714 45 DCDSVFDSSYFRIPTI------------------D-DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQE 103 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~------------------~-~~k~dl~~~~~~~~w~~~~~~~~-~~i~f~~~-~~~~~~~~~~~ 103 (322)
.+|+++-+.|++.+.. . -||+|+...+ ......+ ..+ ..++..++ ++.+..++++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCCCCHHHHHHH
Confidence 5898888888876433 2 3899965422 2222222 233 23566777 77777666322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT 183 (322)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~ 183 (322)
... ...... ........++|+++|.+|+|||||+|+|++.....++..+|+|++.....+.
T Consensus 157 I~~--------------~~~~~~-----~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~ 217 (435)
T PRK00093 157 ILE--------------ELPEEE-----EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE 217 (435)
T ss_pred HHh--------------hCCccc-----cccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE
Confidence 211 000000 0011235799999999999999999999998877788899999988777676
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..+.++||||+........ ........+++..+..+|++++|+|++.+.+.++..+...+... ++|+++|
T Consensus 218 ~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~------~~~~ivv 290 (435)
T PRK00093 218 RDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEA------GRALVIV 290 (435)
T ss_pred ECCeeEEEEECCCCCCCcchhh-HHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCcEEEE
Confidence 7788899999999875433211 11112334566678899999999999888777665554444332 4679999
Q ss_pred EeCCCCCCChhHHHHHHHHHh---cCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 264 MNKVDLVTKKKDLLKVAEQFK---HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+||+|+.... ........+. ...+..+++++||++|.|++++++.+.+.+..+.
T Consensus 291 ~NK~Dl~~~~-~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 291 VNKWDLVDEK-TMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EECccCCCHH-HHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999997432 2222222222 2223457999999999999999999998876553
No 17
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=2.9e-24 Score=174.10 Aligned_cols=156 Identities=24% Similarity=0.359 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++|+++|.||||||||+|+|+|.+ ..+++.||+|.....+.+...+..+.++|+||+....... ..+.+...+-.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s----~ee~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS----EEERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS----HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC----cHHHHHHHHHh
Confidence 479999999999999999999998 6689999999999998888889999999999986543322 12223333333
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
....|++++|+|+++ .+.. ..++..+... +.|+++|+||+|+........ ..+.+.+..++ |++++||++
T Consensus 76 ~~~~D~ii~VvDa~~----l~r~-l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~-pvi~~sa~~ 145 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN----LERN-LYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGV-PVIPVSART 145 (156)
T ss_dssp HTSSSEEEEEEEGGG----HHHH-HHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS--EEEEBTTT
T ss_pred hcCCCEEEEECCCCC----HHHH-HHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCC-CEEEEEeCC
Confidence 577899999999954 2222 2333333333 367999999999876432110 12233333455 699999999
Q ss_pred CCCHHHHHHHH
Q 020714 300 GAGLKALTQYL 310 (322)
Q Consensus 300 g~gi~el~~~i 310 (322)
|+|+++|++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999876
No 18
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=4.7e-23 Score=175.83 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++.+..+.... .+.++.......+...+ ..+.+|||||...+....+ . +......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~-~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~-~---e~~~~~~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY-IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAG-Q---EWMDPRF 75 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc-CCccccccceeEEEECCEEEEEEEEeCCCcccCCccch-h---HHHHHHH
Confidence 47999999999999999999987664322 23222222212222344 4678999999865432111 1 1122233
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCChhHHHHHHHHHh-cCCCCCcEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-HLPGYERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (322)
..+..+|++++|||++++.+.. .+..|.+.+... ...+.|+++|+||+|+...+....+....+. +.+++ +++
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~--~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFH--YVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYL 152 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEE
Confidence 4568899999999997643332 233444443321 2346899999999999764433333333333 23344 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
+|||++|.|++++|+.+.+.+..++..
T Consensus 153 e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 153 ECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 999999999999999999988876544
No 19
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=7.5e-22 Score=169.28 Aligned_cols=165 Identities=21% Similarity=0.285 Sum_probs=112.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
.+..++|+++|.+|||||||+|++++.... +...+++|.......+...+ ..+.+|||||+..... ......+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~ 112 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP----HQLVEAFR 112 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCC----HHHHHHHH
Confidence 355689999999999999999999987642 23334445444444343444 3899999999864321 22334455
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..+..+..+|++++|+|++++...... .+..++..+.. .+.|+++|+||+|+....... ..... ...+++
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~viiV~NK~Dl~~~~~~~-----~~~~~-~~~~~~ 183 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMILVLNKIDLLDDEELE-----ERLEA-GRPDAV 183 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEEEEEccccCChHHHH-----HHhhc-CCCceE
Confidence 566667789999999999775444332 33344444432 357899999999997643322 12222 234699
Q ss_pred EeecCCCCCHHHHHHHHHHHh
Q 020714 294 MTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l 314 (322)
++||++|.|+++++++|.+++
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 184 FISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EEEcCCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 20
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=3.4e-22 Score=190.14 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=123.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...+++|+++|.||||||||+|+|++.+...++..+++|++.....+...+..+.+|||||+..+.. .....++.+
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~----~ie~~gi~~ 287 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD----EVEKIGIER 287 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc----HHHHHHHHH
Confidence 3456899999999999999999999988777888899999887777777888999999999874321 222335677
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
++..+..+|++++|+|++++.+..+. ..+.. ..+.|+++|+||+|+....... . ....+++++
T Consensus 288 ~~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-----~~~~piiiV~NK~DL~~~~~~~--------~-~~~~~~i~i 350 (449)
T PRK05291 288 SREAIEEADLVLLVLDASEPLTEEDD---EILEE-----LKDKPVIVVLNKADLTGEIDLE--------E-ENGKPVIRI 350 (449)
T ss_pred HHHHHHhCCEEEEEecCCCCCChhHH---HHHHh-----cCCCCcEEEEEhhhccccchhh--------h-ccCCceEEE
Confidence 78889999999999999876544332 22222 2357899999999997543221 1 122368999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998754
No 21
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=1.3e-22 Score=168.07 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|.+|||||||++++.+..+... .+..+................+.+|||||...+.. ....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~------------~~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT------------ITTA 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH------------HHHH
Confidence 6899999999999999999998775322 12222111111111111235789999999763211 1124
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.++.+|++++|+|+++.. ....+..|+..+........|+++|+||+|+........+....+....+. +++++||+
T Consensus 70 ~~~~~~~~l~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (165)
T cd01865 70 YYRGAMGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAK 146 (165)
T ss_pred HccCCcEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECC
Confidence 478899999999997643 233566777777654445688999999999976543323333444444555 59999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 020714 299 KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~ 316 (322)
+|.|+++++++|.+.+.+
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 147 ENINVKQVFERLVDIICD 164 (165)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987654
No 22
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=7.3e-22 Score=162.42 Aligned_cols=166 Identities=35% Similarity=0.570 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
..+|+++|.+|+|||||+|++.+...+.....+.++...........+..+.+|||||+..+.... ..........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL----GERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH----HHHHHHHHHH
Confidence 578999999999999999999998877777777777766665555556789999999987543211 1111223344
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|+++........+...+... +.|+++|+||+|+.............+....+..+++++|++
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEec
Confidence 57888999999999876444443443434332 357999999999985555566666677666655679999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 020714 299 KGAGLKALTQYLMEQF 314 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l 314 (322)
++.|+++++++|.+.+
T Consensus 153 ~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 153 KGENVDELLEEIVKYL 168 (168)
T ss_pred cCCChHHHHHHHHhhC
Confidence 9999999999998764
No 23
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=1.2e-22 Score=168.22 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|.+|||||||++++++..+... .+..+.+. ............+.+|||||...+.. . ...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~------~------~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPA------M------QRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchH------H------HHH
Confidence 6899999999999999999998765322 11111111 11111222345678999999875421 1 112
Q ss_pred hcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
.+..+|++++|||+++..+.... .+...+..+.....++.|+++|+||+|+.............+...++. ++++|||
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA 147 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETSA 147 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEeec
Confidence 35678999999999765443322 333444444433345789999999999976433323333334443444 6999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 020714 298 LKGAGLKALTQYLMEQ 313 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~ 313 (322)
++|.|++++|++|.+.
T Consensus 148 ~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 148 KTNHNVQELFQELLNL 163 (165)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9999999999999864
No 24
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.4e-22 Score=183.71 Aligned_cols=173 Identities=25% Similarity=0.342 Sum_probs=123.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+....|+++|.||||||||+|+|++.+ +.++..++||.....+.+.. ++..+.+|||||+.+.... ...+ -..
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gL---g~~ 229 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGL---GHR 229 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccH---HHH
Confidence 344579999999999999999999865 45778889999988888766 4678999999999753221 0111 234
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
.+..+..++++++|+|+++..+ ...+..|..++.... ..++|+++|+||+|+.............+....+. +++
T Consensus 230 flrhie~a~vlI~ViD~s~~~s--~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i~ 306 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDP--VEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PVF 306 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCC--HHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CEE
Confidence 4556778999999999976432 333445555554321 23578999999999976543333333333333333 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|+|+++++++|.+.+.+..
T Consensus 307 ~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 307 LISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887643
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=1.5e-22 Score=167.84 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+||+++|.+|||||||++++.++.+..... ..+..... ...... ...+.+|||||...+.. ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~------------~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVNGQKIKLQIWDTAGQERFRA------------VT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEE--EEEEECCEEEEEEEEECCCcHHHHH------------HH
Confidence 789999999999999999999876532211 11111111 112223 34678999999753211 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...++.+|++++|||++++.+. ..+..|+..+.....++.|+++|+||+|+........+....++...+. +++++|
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 145 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECS 145 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEE
Confidence 2346789999999999765333 3455677666544445688999999999976544333444555554555 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|++++|.++.+.+.+
T Consensus 146 a~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 146 AKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 26
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=1.7e-22 Score=172.67 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=110.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.|+++|.+|||||||++++....+..... +..+.+.....+..++ ..+.+|||+|...+.. + ...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~-~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~----------l--~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACK-SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS----------I--TSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCC-CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH----------H--HHH
Confidence 58999999999999999998776543211 1111122222233333 6778999999864321 1 123
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC-CCCcEEEeec
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYERIFMTSG 297 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~iSa 297 (322)
.++.+|++|+|||+++..+.. .+..|+..+......+.|+++|+||+|+...+.........+++.. +. .+++|||
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~--~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etSA 145 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFD--DLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEASA 145 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEecC
Confidence 578899999999998755443 3455666665444456899999999999765544444455555443 43 5999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|.||+++|++|.+.+..
T Consensus 146 ktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 146 KDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 27
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=5e-22 Score=164.68 Aligned_cols=166 Identities=23% Similarity=0.297 Sum_probs=108.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|||||||+|+|++.... +...+++|...........+..+.+|||||+..... .............+ .
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~~~--~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EERNTIEMQAITAL--A 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cCCchHHHHHHHHH--H
Confidence 6899999999999999999987653 344456666655544445567899999999853211 11011110011111 1
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..+|++++|+|+++..+........++..+... ..+.|+++|+||+|+........ ...+..... .++++|||++|
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~-~~~~~~Sa~~~ 153 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEG-EEVLKISTLTE 153 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH--HHHhhhhcc-CceEEEEeccc
Confidence 235899999999765443223333455555432 13578999999999976533222 233333333 36999999999
Q ss_pred CCHHHHHHHHHHHh
Q 020714 301 AGLKALTQYLMEQF 314 (322)
Q Consensus 301 ~gi~el~~~i~~~l 314 (322)
.|+++++++|.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=2e-22 Score=167.30 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.++|+++|++|||||||++++.+..+... .+..+................+.+|||||...+.. ...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------------~~~ 70 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT------------ITT 70 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH------------HHH
Confidence 58999999999999999999998765332 22222222211111112234678999999754311 112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|||++++.+. ..+..|+..+......+.|+++|+||+|+........+....+....+. +++++||
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 147 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSA 147 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 346789999999999764332 3455666666544445688999999999986443333334444444555 6999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|.|++++|++|.+.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 148 KANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 29
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=1.2e-21 Score=196.34 Aligned_cols=249 Identities=17% Similarity=0.161 Sum_probs=159.5
Q ss_pred CCceEEEccccCCCCC------------------C-CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714 45 DCDSVFDSSYFRIPTI------------------D-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE 104 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~------------------~-~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~ 104 (322)
.+|+++-+.|++..+. . .||+|+...... -...+......+++.++ ++.|..++++..
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i 431 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--AAEFWKLGLGEPYPISAMHGRGVGDLLDEA 431 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--HHHHHHcCCCCeEEEECCCCCCchHHHHHH
Confidence 5888888888765332 2 289997643221 12222222234567788 888888774322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714 105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184 (322)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~ 184 (322)
.+....... . ...-.....++|+++|.||||||||+|+|++.....++..+|+|++.....+..
T Consensus 432 -------------~~~l~~~~~-~--~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~ 495 (712)
T PRK09518 432 -------------LDSLKVAEK-T--SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI 495 (712)
T ss_pred -------------HHhcccccc-c--ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE
Confidence 111111000 0 000011245799999999999999999999988777788899999887776767
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..+.+|||||+........... .....++...+..+|++++|+|++.+.+.++..+...+.. . ++|+++|+
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e-~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~---~---~~piIiV~ 568 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAE-YYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD---A---GRALVLVF 568 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHH-HHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEE
Confidence 888899999999864322111011 1112234456788999999999988766655444333322 2 46899999
Q ss_pred eCCCCCCChhHHHHHHHHHh---cCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 265 NKVDLVTKKKDLLKVAEQFK---HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
||+|+..... .......+. ......+++++||++|.|++++++.+.+.+..+..
T Consensus 569 NK~DL~~~~~-~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 569 NKWDLMDEFR-RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred EchhcCChhH-HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999976322 111122221 12234578999999999999999999999876543
No 30
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=5.1e-22 Score=162.29 Aligned_cols=157 Identities=25% Similarity=0.396 Sum_probs=114.4
Q ss_pred EEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhccc
Q 020714 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (322)
Q Consensus 143 ~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (322)
+++|.+|||||||+|+|.+......+..+++|...........+..+.+|||||+..... .............+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~----~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE----GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh----HHHHHHHHHHHHHHHh
Confidence 478999999999999999987666677788887766666666778899999999975432 1112222333445678
Q ss_pred ccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCC
Q 020714 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG 302 (322)
Q Consensus 223 ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~g 302 (322)
+|++++|+|+.++.+..+..+..++... +.|+++|+||+|+...... ...+.. .+..+++++|+++|.|
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYS-LGFGEPIPISAEHGRG 145 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHh-cCCCCeEEEecccCCC
Confidence 8999999999776555554444555432 3679999999999875433 222222 3444689999999999
Q ss_pred HHHHHHHHHHHh
Q 020714 303 LKALTQYLMEQF 314 (322)
Q Consensus 303 i~el~~~i~~~l 314 (322)
+++++++|.+.+
T Consensus 146 v~~l~~~l~~~~ 157 (157)
T cd01894 146 IGDLLDAILELL 157 (157)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 31
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-22 Score=164.94 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=128.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+.+|++|+|..+|||||||+++....+.. ...+.|...-.....+.....++++|||+|++.|....|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslip----------- 89 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP----------- 89 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhh-----------
Confidence 45899999999999999999998665432 233344433333333444467889999999998755332
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCC-CcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK-QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~-~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
.+++++.++|+|||+++..+.+ ....|++.+...+..+ +-+++|+||.||.+.++...++.+..++..+. .++++
T Consensus 90 -sY~Rds~vaviVyDit~~~Sfe--~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~et 165 (221)
T KOG0094|consen 90 -SYIRDSSVAVIVYDITDRNSFE--NTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIET 165 (221)
T ss_pred -hhccCCeEEEEEEeccccchHH--HHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEe
Confidence 4578999999999998866554 4668888888776664 67889999999999888877778877777777 59999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||+.|.||.++|..|..++...
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999999888764
No 32
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.89 E-value=1.8e-22 Score=170.81 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=114.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..+||+++|.+|||||||+.++....+... ....+. ......+..++ ..+.+|||+|...+.. +
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~--~~~~~~i~~~~~~~~l~iwDt~G~~~~~~----------l- 71 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGI--DYKTTTILLDGRRVKLQLWDTSGQGRFCT----------I- 71 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccee--EEEEEEEEECCEEEEEEEEeCCCcHHHHH----------H-
Confidence 458999999999999999999987654321 112222 21112222333 5778999999864321 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++|+|||+++..+.. .+..|+..+... .++.|+++|+||+|+.............+++..+. ++++
T Consensus 72 -~~~~~~~ad~illVfD~t~~~Sf~--~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e 146 (189)
T cd04121 72 -FRSYSRGAQGIILVYDITNRWSFD--GIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFE 146 (189)
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEE
Confidence 113457899999999998755443 355677777543 35789999999999976544445556666666665 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
|||++|.||+++|++|.+.+...
T Consensus 147 ~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 147 VSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877653
No 33
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=8.9e-22 Score=160.75 Aligned_cols=156 Identities=26% Similarity=0.386 Sum_probs=116.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+++|+++|.+|+|||||+|++.+.........+++|...........+..+.+|||||+...... .........+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~ 76 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE----IEKIGIERARE 76 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch----HHHHHHHHHHH
Confidence 46899999999999999999999887777778888877666556566778999999998754321 12223445566
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|++.+.+..+..... . ..+.|+++|+||+|+...... ... ....+++++||+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~---~-----~~~~~vi~v~nK~D~~~~~~~-------~~~-~~~~~~~~~Sa~ 140 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILE---L-----PADKPIIVVLNKSDLLPDSEL-------LSL-LAGKPIIAISAK 140 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHH---h-----hcCCCEEEEEEchhcCCcccc-------ccc-cCCCceEEEECC
Confidence 678899999999998655444332222 1 235789999999999865432 112 223479999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 020714 299 KGAGLKALTQYLMEQF 314 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l 314 (322)
+|.|+++++++|.+.+
T Consensus 141 ~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 141 TGEGLDELKEALLELA 156 (157)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998764
No 34
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=3.7e-22 Score=165.20 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|+|||||++++....+....... .+.+.....+...+ ..+.+|||||...+. ...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT-IGVDFTMKTLEIEGKRVKLQIWDTAGQERFR------------TIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc-cceEEEEEEEEECCEEEEEEEEECCChHHHH------------HHH
Confidence 478999999999999999999876654322211 11111112233333 478999999975321 112
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.............+....+...++++|
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSF--ESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 2346788999999999764333 23456666665444456889999999999765443333344455555555689999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 020714 297 GLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l 314 (322)
|++|.|+++++++|.+.+
T Consensus 148 a~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 148 AKESQNVEEAFLLMATEL 165 (165)
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=2e-22 Score=166.15 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++....+... ...++.......+..++ ..+.+|||||...+.. .. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK--YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----------MR--D 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCchhhhEEEEEEECCEEEEEEEEECCCccccch----------HH--H
Confidence 6899999999999999999987664322 12222222222233333 4567899999875422 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++|||+++..+. ..+..|+..+... ..++.|+++|+||+|+........+....+...++ .+++++|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S 144 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSF--NDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETS 144 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEec
Confidence 235778999999999764433 2344444444322 23468899999999997644333333444444445 4699999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 020714 297 GLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l 314 (322)
|++|.|+++++++|.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 145 AKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998764
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=4.8e-22 Score=165.07 Aligned_cols=166 Identities=24% Similarity=0.319 Sum_probs=110.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-cEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
.|+++|.+|||||||+|+|.+... .++..+++|.....+.+...+. .+.+|||||+....... .. ....++..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~---~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--KG---LGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--CC---chHHHHHH
Confidence 489999999999999999997654 4556667776666555555555 89999999985321110 11 12233344
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
+..+|++++|+|+++.. .....+..+.+.+... .....|+++|+||+|+.+....... ...+.......+++++||
T Consensus 76 ~~~~d~vi~v~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 76 IERTRLLLHVIDLSGDD-DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFEL-LKELLKELWGKPVFPISA 153 (170)
T ss_pred HHhCCEEEEEEecCCCC-CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHH-HHHHHhhCCCCCEEEEec
Confidence 56789999999997641 1222333444444322 1235789999999999765443332 333333222346999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 020714 298 LKGAGLKALTQYLMEQF 314 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l 314 (322)
++|.|+++++++|.+.+
T Consensus 154 ~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 154 LTGEGLDELLRKLAELL 170 (170)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 37
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=4.9e-22 Score=164.59 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|||||||++++.+..+... ..+..+.+.....+... ...+.+|||||...+.. ..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT------------IT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH------------HH
Confidence 47899999999999999999998765432 12222222221222233 34678999999753211 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..+|++++|||+++..+ ...+..|+..+.....++.|+++|+||+|+........+....+....+. +++++|
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s--~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 145 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETS 145 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEE
Confidence 234678899999999976432 23455677666544445688999999999876543333334455555555 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+..
T Consensus 146 a~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 146 AKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 38
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=2.3e-22 Score=170.64 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=105.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|.+|||||||++++....+... ...++...........+ ..+.+|||||...+.. +. ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET--YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA----------LR--DQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc--CCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----------HH--HH
Confidence 489999999999999999987665322 12222221111222333 3578999999764321 11 13
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc---ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG---KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~---~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
.+..+|++++|||+++..+.. .+..|+..+. ....++.|+++|+||+|+.............+....+. +++++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 143 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFE--RVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEA 143 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEe
Confidence 467789999999997644332 3344444443 22235689999999999975433333334445554555 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|++++|++|.+.+..+
T Consensus 144 SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 144 SAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 39
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=1.9e-22 Score=168.37 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=108.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|||||||++++....+.... ..+........+..++ ..+.+|||||...+.. + .
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------l------~ 67 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH--DPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA------M------R 67 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc--CCcccceEEEEEEECCEEEEEEEEeCCCchhhHH------H------h
Confidence 478999999999999999999877654221 1111111111122333 4678999999864321 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|||+++..+... +..|...+... ..++.|+++|+||+|+.............+++..+. ++++|
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~ 144 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQE--ASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFET 144 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHH--HHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEE
Confidence 134678899999999987655443 23333333221 224689999999999976544333344555554555 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.||+++|++|.+.+.+.
T Consensus 145 Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 145 SAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred ecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999887754
No 40
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=5.8e-22 Score=164.68 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=111.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.++|+++|.+|||||||++++.+........ ..+.+..............+.+|||||...+. ....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR------------SITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH------------HHHH
Confidence 4799999999999999999999876543322 22332222221122223478899999965321 1122
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|+++..+ ...+..|+..+.....++.|+++|+||+|+.............+....+. +++++||
T Consensus 72 ~~~~~~d~il~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 148 (168)
T cd01866 72 SYYRGAAGALLVYDITRRET--FNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSA 148 (168)
T ss_pred HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 45678899999999975332 23566777777654456789999999999975433222333444444455 5999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|.|++++|.++.+.+.+
T Consensus 149 ~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 149 KTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 41
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=8.4e-22 Score=167.30 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+||+++|.+|||||||++++.+..+......+.+..+.....+... ...+.||||||...+.. ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS------------VTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH------------hhH
Confidence 4799999999999999999988765322222222222221122233 35678999999753211 112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+...+.........+...++. +++++||
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa 145 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASF--DNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSA 145 (191)
T ss_pred HHccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeC
Confidence 346788999999999764322 2344555555443334678999999999975433333334445554555 6999999
Q ss_pred CCCCCHHHHHHHHHHHhhhcC
Q 020714 298 LKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~~~ 318 (322)
++|.|++++|++|.+.+.+..
T Consensus 146 ~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 146 KTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 42
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.88 E-value=4.3e-22 Score=166.63 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+|++++|.+|||||||+.++..+.+.. ..++.+... ...+..+ ...+.+|||+|...+....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~~~~~~------------ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQEDYNRLR------------ 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCccccccc------------
Confidence 579999999999999999999876642 222222211 1112223 3567899999987654311
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCCh----------hHHHHHHHHHhc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKH 285 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----------~~~~~~~~~~~~ 285 (322)
...++.+|++|+|||++++.+... + ..|+..+.... ++.|+++|+||+|+.+.. .+..+....+++
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~--~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~ 143 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYEN--VLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK 143 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHH--HHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence 125688999999999987655433 3 35666665332 468999999999996532 234555667777
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 286 LPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
..+..++++|||++|.||+++|+.+.+.+.
T Consensus 144 ~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 144 QIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 666656999999999999999999998763
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=7e-22 Score=170.92 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+||+++|.+|||||||+++|.+..+.... .+..+.+.....+... ...+.||||||...+.. . ..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~-~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~------l---~~-- 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY-KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK------M---LD-- 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH------H---HH--
Confidence 47999999999999999999987653211 1222222222222222 35788999999753311 1 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..+..+|++++|||+++..+.. .+..|+..+... ...+.|+++|+||+|+...+.........+...++. +++
T Consensus 69 -~~~~~ad~iilV~D~t~~~s~~--~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~ 144 (215)
T cd04109 69 -KYIYGAHAVFLVYDVTNSQSFE--NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESC 144 (215)
T ss_pred -HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEE
Confidence 2367899999999997654432 333444444322 123467999999999976544444445556655665 589
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|+|++++|++|.+.+....
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~~~~ 169 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELLGVD 169 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887643
No 44
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-22 Score=165.56 Aligned_cols=166 Identities=14% Similarity=0.146 Sum_probs=127.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||+++-++....+.... ...|.........+......+++|||.|+..+..
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t------------ 76 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT------------ 76 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH------------
Confidence 446799999999999999999999877654221 1222222222222333345779999999986521
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.+-.+++.|+++++|||+++..+..+ +..|++.+.....+++|.++|+||+|+...+.+..+..+.++..+|. .+++
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~E 153 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFE 153 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEE
Confidence 12245788899999999987655544 55688888877777899999999999999888888888999988888 5999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.||++.|-.|.+.+..
T Consensus 154 tSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 154 TSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 45
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=6.7e-22 Score=163.30 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+|++.+..+.... ..++.+......... ...+.+|||||...+.. .. .
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~------~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY--DPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA------MR------D 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccc--CCchhhhEEEEEEECCEEEEEEEEECCCcccchH------HH------H
Confidence 47999999999999999999987654322 122222222222233 34678999999875421 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++|+|+++..+.. .+..|...+.. ....+.|+++|+||+|+.............+....+. +++++|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 143 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFE--EIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETS 143 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEee
Confidence 2356789999999997643332 23333333221 1223578999999999976433333333444444443 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+..
T Consensus 144 a~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 144 AKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred cCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 46
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.7e-22 Score=161.89 Aligned_cols=164 Identities=17% Similarity=0.166 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..+|++++|..|||||+|+.+++.+.+..+.. +.|.........+.....++.+|||.|++.+.. +.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs----------v~-- 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS----------VT-- 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH----------HH--
Confidence 45899999999999999999999887654433 233333333333334456789999999975421 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
-..++.+.++|+|||++.+.++ ..+..||..+.....++..+++++||+||...+.+..++.+.|++.+++. ++++|
T Consensus 73 ~syYr~a~GalLVydit~r~sF--~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETS 149 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESF--NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETS 149 (216)
T ss_pred HHHhccCcceEEEEEccchhhH--HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhh
Confidence 2457899999999999775544 45778888888777778889999999999998888899999999999995 88999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++++|++|.|..+...+.+
T Consensus 150 akt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 99999999999998888765
No 47
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=7.4e-22 Score=168.98 Aligned_cols=163 Identities=21% Similarity=0.195 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
++|+++|.+|||||||++++.+..+.... .+....+.....+... ...+.+|||||...+.. . .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~-~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~----------~--~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY-KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG----------M--T 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh----------h--H
Confidence 47999999999999999999987543221 1211112112222222 34678999999864321 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc----ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG----KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~----~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
...+..+|++++|||+++..+.. .+..|...+. .....+.|+++|+||+|+........+....+....+..++
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFE--AVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGW 145 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence 23467899999999997654433 2334444332 12234689999999999974333333445555555665579
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|++++|++|.+.+.+.
T Consensus 146 ~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 146 FETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988664
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.4e-21 Score=187.56 Aligned_cols=165 Identities=24% Similarity=0.295 Sum_probs=123.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.||||||||+|+|++.....+...+|+|++.........+..+.+|||||+..... .........+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~----~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK----GLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch----hHHHHHHHHH
Confidence 445789999999999999999999988777888999998877776667788899999999863221 1111222334
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..||++|+|+|++++.+..+..+..++.. .++|+++|+||+|+....... ...+. .++..+++||
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~------~~~piilV~NK~Dl~~~~~~~---~~~~~--~g~~~~~~iS 180 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRR------SGKPVILAANKVDDERGEADA---AALWS--LGLGEPHPVS 180 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCCccchhh---HHHHh--cCCCCeEEEE
Confidence 456788999999999988766665556555553 257899999999986532221 11222 2344568999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+.+
T Consensus 181 A~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCCCcHHHHHHHHhhccc
Confidence 99999999999999988755
No 49
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=7.4e-22 Score=163.27 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=107.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|||||||++++.+..+.... .+..+.+.....+...+ ..+.+|||||...+.. ..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~ 69 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA------------IT 69 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH------------HH
Confidence 478999999999999999999987654322 22222222222233333 4678999999753211 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..++++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++|
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 146 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS 146 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence 1345788999999999754332 3455677666544434588999999999976543333333444443444 599999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 020714 297 GLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l 314 (322)
|++|.|+++++++|...+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.88 E-value=4.8e-22 Score=164.28 Aligned_cols=159 Identities=15% Similarity=0.138 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++..+.+.. ...+++.......+... ...+.+|||||...+.. . ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~----~~-- 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA------M----RD-- 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEECCCcccchh------H----HH--
Confidence 689999999999999999998665432 12223322222223333 34567999999865422 1 11
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++|||+++..+.. .+..|+..+.. ....+.|+++|+||+|+.............+....+. +++++|
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 144 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFN--DLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETS 144 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEee
Confidence 2457789999999996543332 23344444432 2335689999999999976543332333444444444 699999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 020714 297 GLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~ 315 (322)
|++|.|+++++.+|.+.+.
T Consensus 145 a~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 145 AKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999998764
No 51
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=8.6e-22 Score=162.80 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeee--EEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+|++.+..+... ..+..+.+. ...........+.+|||||...+. . ..-
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~------~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK-YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL------E------VRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCccceeEEEEEEEECCeEEEEEEEECCccHHHH------H------HHH
Confidence 4799999999999999999998765431 112222111 111122234577899999975321 1 111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-----CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-----PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-----~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
..+..+|++|+|+|++++.+. ..+..|+..+..... ...|+++|+||+|+.............+....+. ++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 144 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KY 144 (168)
T ss_pred HHhccCCEEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eE
Confidence 245788999999999764332 234456665543322 4588999999999974332222333334444444 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHhh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+++||++|.|+++++++|.+.+.
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 52
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=1e-21 Score=166.29 Aligned_cols=163 Identities=20% Similarity=0.164 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|.+|||||||++++.+..+.. ..+..+.+..............+.+|||||...+.. ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------------~~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS------------LNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh------------hHHH
Confidence 479999999999999999999877643 222222222211111111234678999999753211 1123
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|||++++.+ ...+..|+..+........|+++|+||+|+.............+....+. +++++||+
T Consensus 69 ~~~~~d~iilv~d~~~~~s--~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~ 145 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQES--FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAK 145 (188)
T ss_pred HccCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 4678999999999976433 23455566666544444578999999999975443323333444444555 69999999
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q 020714 299 KGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~~ 317 (322)
+|.|++++|++|.+.+..+
T Consensus 146 ~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 146 QSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 53
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.88 E-value=5.2e-22 Score=171.60 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++|+++|.+|||||||++++....+....+..+.. ..........+.+|||||...+.. . .. ..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~----~~~~~~~~~~l~iwDt~G~e~~~~------l----~~--~~ 64 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGA----FYLKQWGPYNISIWDTAGREQFHG------L----GS--MY 64 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceE----EEEEEeeEEEEEEEeCCCcccchh------h----HH--HH
Confidence 47999999999999999999988765322222211 111222356789999999875422 1 11 23
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC-------------------ChhHHHHHH
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-------------------KKKDLLKVA 280 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~-------------------~~~~~~~~~ 280 (322)
+..+|++|+|||++++.+... +..++..+.....++.|+|+|+||+|+.. .+.+..+..
T Consensus 65 ~~~ad~~IlV~Dvt~~~Sf~~--l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 65 CRGAAAVILTYDVSNVQSLEE--LEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred hccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 678999999999987544433 33344333333334688999999999975 223333444
Q ss_pred HHHhcCCC-------------CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 281 EQFKHLPG-------------YERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 281 ~~~~~~~~-------------~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..+++..+ ..++++|||++|.||+++|..+.+.+..
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 45544333 1369999999999999999999987764
No 54
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=5.2e-21 Score=158.66 Aligned_cols=168 Identities=26% Similarity=0.353 Sum_probs=116.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+++|+++|.+|+|||||+|+|++.........++++.......+...+..+.+|||||+........ ..........+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEE-GIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhc-cHHHHHHHHHHH
Confidence 5789999999999999999999887666666777777766555666778899999999875422111 101111233445
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHHHhcCC---CCCcEEE
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLP---GYERIFM 294 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~~~~---~~~~~~~ 294 (322)
.+..+|++++|+|++++.+.....+.. .+... +.|+++|+||+|+.... .........+.+.. +..++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~---~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAG---LILEE---GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHH---HHHhc---CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 567889999999998766554433222 22222 46799999999997653 22333333333322 2347999
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 020714 295 TSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~ 313 (322)
+||++|.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999999875
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=1.7e-21 Score=160.72 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=105.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|||||||++++.+..+. .....++...........+ ..+.+|||||...+.. . ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~---~~-- 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA------M---RE-- 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH------H---HH--
Confidence 378999999999999999999876543 2222233222222222333 4678999999864321 1 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
..+..+|++++|+|+++..+. ..+..|...+... ...+.|+++|+||+|+.............+....+. +++++
T Consensus 69 -~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (164)
T cd04145 69 -QYMRTGEGFLLVFSVTDRGSF--EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIET 144 (164)
T ss_pred -HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEe
Confidence 235678999999999764432 2344444444322 234678999999999976543333334445544555 69999
Q ss_pred ecCCCCCHHHHHHHHHHHh
Q 020714 296 SGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l 314 (322)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 145 SAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred eCCCCCCHHHHHHHHHHhh
Confidence 9999999999999998765
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=9.1e-22 Score=162.08 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+||+++|++|||||||+++|.+....... ...+................+.+|||||...+.. ....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------------~~~~ 68 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS------------VTRS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH------------hHHH
Confidence 47999999999999999999987653322 2222222211111222235678999999753211 1123
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|+++..+. ..+..|+..+.....++.|+++|+||+|+.............+....+. +++++||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSAL 145 (161)
T ss_pred HhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEECC
Confidence 45788999999999764333 2455666666544456789999999999976443333334444444554 69999999
Q ss_pred CCCCHHHHHHHHHHH
Q 020714 299 KGAGLKALTQYLMEQ 313 (322)
Q Consensus 299 ~g~gi~el~~~i~~~ 313 (322)
+|.|++++++++.+.
T Consensus 146 ~~~~i~~~~~~~~~~ 160 (161)
T cd04113 146 TGENVEEAFLKCARS 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999875
No 57
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=4.6e-22 Score=167.42 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..++|+++|.+|||||||++++..+.+... .++.+... .....+......+.+|||+|...+.. +.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~----------~~-- 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN----------VR-- 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHh----------hh--
Confidence 467899999999999999999988765421 11221111 11111222235688999999864421 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHHHh
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFK 284 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~~~ 284 (322)
...+..+|++++|||++++.+.... ...|+..+... .++.|+++|+||+|+... ..+..+....++
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~-~~~w~~~i~~~-~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEF-CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHH-CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 1347889999999999776444321 24566665543 246899999999999642 124455677777
Q ss_pred cCCCCCcEEEeecCCCCC-HHHHHHHHHHHhh
Q 020714 285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQFK 315 (322)
Q Consensus 285 ~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~ 315 (322)
+..+..++++|||++|.| |+++|+.+.++..
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 777765799999999998 9999999998643
No 58
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=6.8e-22 Score=165.93 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+||+++|.+|||||||++++.+..+.... .+ +........+..+ ...+.+|||+|...+.... .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~-~~-t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~------------~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETY-VP-TVFENYTASFEIDEQRIELSLWDTSGSPYYDNVR------------P 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCc-CC-ceEEEEEEEEEECCEEEEEEEEECCCchhhhhcc------------h
Confidence 68999999999999999999987654211 11 1111111112223 3567899999986542211 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHHHhc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFKH 285 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~~~~ 285 (322)
..+..+|++|+|||++++.+... ....|+..+... .++.|+++|+||+|+... ..+..+....+++
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~-~~~~w~~~i~~~-~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDS-VLKKWRGEIQEF-CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHH-HHHHHHHHHHHH-CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 24688999999999977654432 124566555533 246889999999999641 1234456777777
Q ss_pred CCCCCcEEEeecCCCCC-HHHHHHHHHHHhh
Q 020714 286 LPGYERIFMTSGLKGAG-LKALTQYLMEQFK 315 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~ 315 (322)
..+..++++|||++|+| |+++|..+.++..
T Consensus 146 ~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 146 QLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 77765799999999995 9999999998644
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=1.7e-21 Score=160.29 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+|++++..+.. ...++.+.+.....+...+ ..+.+|||||...+. . ...
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~---~~~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR---------S---LIP 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH---------H---HHH
Confidence 379999999999999999999877543 3334444443333333333 458899999965321 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|++++.+. ..+..++..+......+.|+++|+||+|+.............+....+. +++++||
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 144 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSA 144 (161)
T ss_pred HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeC
Confidence 346788999999999764333 3345566665544334689999999999964433333333444444444 5999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 020714 298 LKGAGLKALTQYLMEQF 314 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l 314 (322)
++|.|+++++++|.+.+
T Consensus 145 ~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 145 KAGHNVKELFRKIASAL 161 (161)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=1.2e-21 Score=161.65 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|++|||||||++++..+.+.... .+....+.....+...+ ..+.+|||+|...+.. ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------------~~~ 67 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSH-ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT------------ITK 67 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh------------hHH
Confidence 47999999999999999999987654221 12111111112222333 4678999999764321 111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|||+++..+. ..+..|+..+......+.|+++|+||+|+...+....+....+++..+. +++++||
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa 144 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSA 144 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 346788999999999765433 3455677766544334688999999999976554444555566655554 6999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 020714 298 LKGAGLKALTQYLMEQ 313 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~ 313 (322)
++|.|++++|++|.+.
T Consensus 145 ~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 145 CTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999865
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=1.6e-21 Score=160.73 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|++|||||||+|++.+..+.. .....+.+.......+...+..+.+|||||...+.. ....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~------------~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS------------LAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH------------HHHH
Confidence 689999999999999999999887654 333333333222222323345688999999753211 1113
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|+++..+. .....|+..+.....+..|+++|+||+|+.............+....+. +++++||+
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESF--EKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAK 146 (163)
T ss_pred HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECC
Confidence 46778999999999653322 2344566665544445788999999999875332222223333333444 69999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 020714 299 KGAGLKALTQYLMEQF 314 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l 314 (322)
+|.|+++++++|.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 62
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=2.6e-21 Score=159.48 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+||+++|.+|+|||||++++.+....... .+..+.......+...+ ..+.+|||||...+. ....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------------~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY-KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR------------SITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCChHHHH------------HHHH
Confidence 57999999999999999999987653211 12222111112223333 467899999965321 1112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|||+++..+. ..+..|+..+.....++.|+++|+||+|+........+....+....+. +++++||
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 144 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSA 144 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeC
Confidence 345788999999999764333 3344566666554445789999999999876433222333344444555 5999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|.|+++++++|.+.+.+
T Consensus 145 ~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 145 KTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998765
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.87 E-value=1.2e-21 Score=161.62 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++..+.+..... .+........+...+ ..+.||||||...+... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~------ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD--PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM------RD------ 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CchhheEEEEEEECCEEEEEEEEECCCcccccch------HH------
Confidence 689999999999999999998876543211 121111111222233 35779999998755321 11
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++|+|+++..+.. .+..|+..+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 144 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQ--DIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETS 144 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEec
Confidence 2356789999999997654332 344444444322 224688999999999965433222233444443444 689999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 020714 297 GLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l 314 (322)
|++|.|+++++++|.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 145 AKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998754
No 64
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.87 E-value=3.1e-21 Score=161.86 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEe----------eCCccEEEEeCCCcccCCCCCChh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMT----------KADTQICIFDTPGLMLNKSGYSHK 207 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~----------~~~~~~~l~DtpG~~~~~~~~~~~ 207 (322)
.++|+++|.+|||||||++++.+..+... .+..+........... .....+.+|||||...+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------ 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR------ 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH------
Confidence 47899999999999999999987654321 1111211111111111 113567899999975321
Q ss_pred hHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
......+..+|++++|||+++..+. ..+..|+..+.... .++.|+++|+||+|+........+....++..
T Consensus 78 ------~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~ 149 (180)
T cd04127 78 ------SLTTAFFRDAMGFLLIFDLTNEQSF--LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK 149 (180)
T ss_pred ------HHHHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence 1122346789999999999764332 34556666654322 24578999999999976544333445555555
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.+. +++++||++|.|+++++++|.+.+.+
T Consensus 150 ~~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 150 YGI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred cCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 565 69999999999999999999987764
No 65
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=3.1e-21 Score=176.24 Aligned_cols=170 Identities=26% Similarity=0.379 Sum_probs=120.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+....|+++|.||||||||+|+|++.+ +.++..+++|.....+.+...+ ..+.+|||||+.+..... ..+ -..
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~--~gL---g~~ 228 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG--AGL---GHR 228 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc--ccH---HHH
Confidence 344679999999999999999999865 3467778888888888776665 789999999997543211 111 223
Q ss_pred HHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.+..+..++++++|+|+++.. +.....+..+.+++... .....|+++|+||+|+.... ...+..+.+.+..+. ++
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-~~~~~~~~l~~~~~~-~v 306 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-ELAELLKELKKALGK-PV 306 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-HHHHHHHHHHHHcCC-cE
Confidence 445567889999999997541 12333344444444322 12357899999999997653 344455555544443 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l 314 (322)
+++||++++|+++++++|.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 9999999999999999998865
No 66
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=3.1e-21 Score=161.54 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+||+++|.+|||||||++++..+.+.. ....+........+..++ ..+.+|||+|...+... . .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~--~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL----------R--P 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh----------h--h
Confidence 689999999999999999999876532 111222221111222334 56789999999754221 1 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHh
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (322)
..+..+|++++|||++++.+... +. .|+..+... .++.|+++|+||+|+..... +..+....++
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~--~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFEN--VKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHH--HHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 24678899999999976543332 32 355555432 24689999999999865421 1222334444
Q ss_pred cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
...+...+++|||++|.|++++|+.++.+.
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 444544699999999999999999998864
No 67
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=2.1e-21 Score=161.14 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+||+++|.+|||||||+++++...+.. ..+..+................+.+|||||...+.... . .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------~--~ 68 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR----------D--G 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc----------H--H
Confidence 479999999999999999998655321 22222222211111111224578899999987543211 0 2
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|++++.+. ..+..|+..+..... +.|+++|+||+|+....... . ...+...... +++++||+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~~~~-~-~~~~~~~~~~-~~~e~Sa~ 142 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRKVKA-K-QITFHRKKNL-QYYEISAK 142 (166)
T ss_pred HhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCC-CCcEEEEEEchhcccccCCH-H-HHHHHHHcCC-EEEEEeCC
Confidence 35678999999999764333 335567666654432 68899999999997432211 2 2233333333 69999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 020714 299 KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~ 316 (322)
+|.|++++|++|.+.+.+
T Consensus 143 ~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 143 SNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 999999999999988865
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=1.7e-21 Score=165.10 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=106.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|.+|||||||++++.++.+..... +..... .......+ ...+.+|||||...+.... . .
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~----------~--~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYE-PTVFEN-YVHDIFVDGLHIELSLWDTAGQEEFDRLR----------S--L 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccC-Ccceee-eEEEEEECCEEEEEEEEECCCChhccccc----------c--c
Confidence 68999999999999999999877643221 111111 11112222 3568999999987543211 1 2
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH------------HHHHHHHhcC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFKHL 286 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------------~~~~~~~~~~ 286 (322)
.+..+|++++|||+++..+..... ..|+..+... .++.|+++|+||+|+....... ......++..
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~-~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVE-SKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 467889999999997754443221 2355555532 3468999999999997653211 1223344444
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.+..++++|||++|.|++++|++|.+.+...
T Consensus 146 ~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 146 INALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred cCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 4444699999999999999999999988754
No 69
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=3.1e-21 Score=167.74 Aligned_cols=165 Identities=12% Similarity=0.113 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..++|+++|.+|||||||++++....+... .++.+... .....+......+.||||+|...+.. +.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~----------~~-- 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDN----------VR-- 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHH----------HH--
Confidence 467999999999999999999987765421 11111111 11111112245688999999864321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHHHh
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFK 284 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~~~ 284 (322)
...+..+|++++|||+++..+... .+..|+..+.... ++.|+++|+||+|+... ..+..+....++
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~-~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a 156 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDS-ALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA 156 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHH-HHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence 135789999999999976544432 1245666655332 46789999999998642 234445677788
Q ss_pred cCCCCCcEEEeecCCCC-CHHHHHHHHHHHhhhc
Q 020714 285 HLPGYERIFMTSGLKGA-GLKALTQYLMEQFKDL 317 (322)
Q Consensus 285 ~~~~~~~~~~iSa~~g~-gi~el~~~i~~~l~~~ 317 (322)
+..+...+++|||++|. ||+++|+.+...+.+.
T Consensus 157 ~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 157 KQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 77777569999999998 8999999999887654
No 70
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=3.6e-21 Score=164.46 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=110.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..++|+++|++|||||||++++.+..+.. ..+..+...... .+...+ ..+.||||||...+..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~l~l~D~~G~~~~~~------------ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR--TVEINGERVKLQIWDTAGQERFRT------------ 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEE--EEEECCEEEEEEEEeCCCchhHHH------------
Confidence 36899999999999999999999876532 122222211111 122223 4678999999764311
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|+++..+. ..+..|+..+... .+..|+++|+||+|+.............+....+. ++++
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~--~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 146 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESF--VNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFE 146 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 112346778999999999764332 3455677666543 24678999999999976543333334444444454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.||+++|++|.+.+...
T Consensus 147 ~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 147 TSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred EECCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 71
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=7.1e-21 Score=178.26 Aligned_cols=167 Identities=23% Similarity=0.347 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
..|+++|.||||||||||+|++.+ +.++..+++|.....+.+... +..+.++||||+..... .. .. .....+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~-~~-~g---Lg~~fLr 232 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS-EG-VG---LGHQFLR 232 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc-cc-ch---HHHHHHH
Confidence 479999999999999999999876 346678889988888776655 67899999999975322 10 11 1233455
Q ss_pred hcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 219 AVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
.+..++++++|+|+++.. .........+..++... ....+|+++|+||+|+......... +.+..+ .+++++
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~----l~~~l~-~~i~~i 307 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEE----FKEKLG-PKVFPI 307 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHH----HHHHhC-CcEEEE
Confidence 667889999999997531 12223333444444332 1235889999999998543222222 222223 369999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|+|+++|+++|.+.+...
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999888654
No 72
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=7.9e-21 Score=176.99 Aligned_cols=172 Identities=26% Similarity=0.346 Sum_probs=120.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
...|+|+|.||||||||+|+|++.+. .++..++||+....+.+...+ ..+.|+||||+...... ...+ -...+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~~L---g~~~l 232 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GAGL---GIRFL 232 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hhhH---HHHHH
Confidence 34699999999999999999998764 788899999999998877654 46999999999754321 0111 22334
Q ss_pred hhcccccEEEEEEeCCCC-CCCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCC-CcEE
Q 020714 218 SAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY-ERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 293 (322)
..+..+|++++|+|++.. ..........+++++... .....|+++|+||+|+..... ..+....+....+. .+++
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi 311 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVY 311 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEE
Confidence 567888999999998621 112222333444444432 123578999999999975432 33333444333332 2689
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++||+++.|+++|+++|.+.+.+.
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhhC
Confidence 999999999999999999998764
No 73
>PTZ00369 Ras-like protein; Provisional
Probab=99.87 E-value=4e-21 Score=162.86 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=106.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..++|+++|.+|||||||++++.+..+... .+..+.+ ....+... ...+.+|||||...+.. .
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~------l----- 69 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS---YRKQCVIDEETCLLDILDTAGQEEYSA------M----- 69 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE---EEEEEEECCEEEEEEEEeCCCCccchh------h-----
Confidence 358999999999999999999998765322 1212211 12222223 34577999999875432 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|+++..+.. .+..|...+... ..++.|+++|+||+|+.............+....+. +++
T Consensus 70 -~~~~~~~~d~iilv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~ 145 (189)
T PTZ00369 70 -RDQYMRTGQGFLCVYSITSRSSFE--EIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFL 145 (189)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEE
Confidence 112456889999999997654322 344455444322 234678999999999865433222233334443444 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++||++|.|++++|++|.+.+.+.
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 74
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=9.7e-21 Score=155.95 Aligned_cols=155 Identities=18% Similarity=0.339 Sum_probs=99.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeee--cCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.|+++|.+|||||||+|+|++...... ...+++|........... +..+.+|||||+..+ .....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~------------~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF------------IKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH------------HHHHH
Confidence 589999999999999999997532221 123445554443334444 678999999997532 12333
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcC-CCCCcEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL-PGYERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~-~~~~~~~ 293 (322)
..+..+|++++|+|+++....+.......+...+ ..|+++|+||+|+..... ...+....+... ....+++
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 4567899999999996543222222222222221 237999999999976421 122333333332 0224699
Q ss_pred EeecCCCCCHHHHHHHHHH
Q 020714 294 MTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~ 312 (322)
++||++|.|+++++++|.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998864
No 75
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=4.7e-21 Score=157.39 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+|++.+..+... ...++...........+ ..+.+|||||...+.. . . .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------l---~---~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE--YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------M---R---D 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC--cCCcchheEEEEEEECCEEEEEEEEECCCCcchHH------H---H---H
Confidence 6899999999999999999998765321 11222222222222333 3467899999864311 1 1 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++|+|+++..+. ..+..|...+... ...+.|+++|+||+|+..... .......+....+. +++++|
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~--~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~S 143 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSF--EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV-SSRQGQDLAKSYGI-PYIETS 143 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccee-cHHHHHHHHHHhCC-eEEEec
Confidence 245678999999999764332 2233344433322 224678999999999976422 22223333333444 699999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 020714 297 GLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l 314 (322)
|++|.|++++|++|.+.+
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 144 AKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 76
>PLN03118 Rab family protein; Provisional
Probab=99.87 E-value=3.9e-21 Score=165.75 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=108.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||+++|.+..+....+..+.+.......+......+.||||||...+.. . .
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~------~ 79 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT------L------T 79 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH------H------H
Confidence 346899999999999999999999877644443333332222211212235678999999865321 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
...+..+|++++|||+++..+... +.. |...+... .....|+++|+||+|+........+....+....+. ++++
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~--~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e 156 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTN--LSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLE 156 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEE
Confidence 134578899999999976433322 222 32222211 123468999999999976443333333344444454 5899
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|++++|++|.+.+...
T Consensus 157 ~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 157 CSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999888653
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=4.3e-21 Score=159.76 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=107.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-eEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
++.++|+++|.+|||||||++++++..+. +....+++.. .....+...+ ..+.+||++|...+...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---------- 70 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL---------- 70 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc----------
Confidence 46789999999999999999999987764 1111222211 1111122333 46789999998754221
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|++++.+ ...+..|+..+... .+.|+++|+||+|+.............+....+...++
T Consensus 71 --~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T cd01892 71 --NDAELAACDVACLVYDSSDPKS--FSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL 144 (169)
T ss_pred --chhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence 1123578899999999966422 22344555554322 35789999999999654332222233444555554579
Q ss_pred EeecCCCCCHHHHHHHHHHHhhh
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++||++|.|++++|+.|.+.+..
T Consensus 145 ~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 145 HFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred EEEeccCccHHHHHHHHHHHhhC
Confidence 99999999999999999998764
No 78
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.87 E-value=2.7e-21 Score=164.16 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.++|+++|.+|||||||+.++..+.+... .+..+. ........+ ...+.+|||+|...+.. +..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----------l~~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD---NYSAQTAVDGRTVSLNLWDTAGQEEYDR----------LRT 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe---eeEEEEEECCEEEEEEEEECCCchhhhh----------hhh
Confidence 47899999999999999999998765321 122221 111112223 35678999999875422 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ 282 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~ 282 (322)
..+..+|++|+|||+++..+.. .+. .|...+... .++.|+++|+||+|+..... ...+....
T Consensus 70 --~~~~~a~~~ilvydit~~~Sf~--~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T cd01875 70 --LSYPQTNVFIICFSIASPSSYE--NVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred --hhccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 2467899999999997755433 232 355544432 34689999999999965422 12234555
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++...+..++++|||++|.||+++|++|.+.+..
T Consensus 145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 6665564469999999999999999999988765
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=4.7e-21 Score=159.29 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|++|||||||+|++.+..+..... +..+.+.....+... ...+.+|||||...+. ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ------------SLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC-CccceEEEEEEEEECCEEEEEEEEeCCChHHHH------------hHHH
Confidence 479999999999999999999876432211 111111111112222 3456799999975321 1112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh----cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM----GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~----~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..+..+|++|+++|+++..+. ..+..|...+ ......+.|+++|+||+|+........+....+....+..+++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSF--ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF 145 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence 346788999999999764332 2233343332 2222336889999999999743322223334444445545799
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++||++|.|+++++++|.+.+.+.
T Consensus 146 ~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 146 ETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 80
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=3.4e-21 Score=166.99 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=111.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++|+++|.+|||||||+++++.+.+. ...+..+.+..............+.+|||||...+.. +..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh----------hhH
Confidence 46789999999999999999998766543 2333344433332221222346789999999875422 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
..+..+|++|+|||+++..+. ..+..|+..+... .++.|+++|+||+|+....... ... .+....++ ++++|
T Consensus 81 --~~~~~~~~~ilvfD~~~~~s~--~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~-~~~-~~~~~~~~-~~~e~ 152 (219)
T PLN03071 81 --GYYIHGQCAIIMFDVTARLTY--KNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKA-KQV-TFHRKKNL-QYYEI 152 (219)
T ss_pred --HHcccccEEEEEEeCCCHHHH--HHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCH-HHH-HHHHhcCC-EEEEc
Confidence 246788999999999775433 3455677666533 2468999999999996432212 222 33344444 59999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|++++|++|.+.+.+.
T Consensus 153 SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 153 SAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999988653
No 81
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=4.3e-21 Score=166.05 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=112.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+++|.+..+.... .+....+.....+... ...+.||||||...+.. .
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~------------~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA------------I 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH------------H
Confidence 4689999999999999999999987654221 1212222222222233 34788999999764211 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
....+..++++++|||+++..+. ..+..|+..+......+.|+++|+||+|+........+....+....+. +++++
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~ 154 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLET 154 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEE
Confidence 12346788999999999764433 3455666666554445689999999999976544334445555555555 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|++++|++|.+.+..
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988865
No 82
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.6e-21 Score=181.52 Aligned_cols=161 Identities=24% Similarity=0.330 Sum_probs=125.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.||||||||+|+|++...+.+...+|+|++.........+..+.+|||||+..... .........+...+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD----GLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch----hHHHHHHHHHHHHH
Confidence 48999999999999999999988778888999999888777777888999999999864321 12233344555677
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..+|++++|+|+..+.+..+..+..++... ++|+++|+||+|+....... ..+. ..++.+++++||++|
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~------~~piilVvNK~D~~~~~~~~----~~~~-~lg~~~~~~vSa~~g 145 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKS------GKPVILVANKIDGKKEDAVA----AEFY-SLGFGEPIPISAEHG 145 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh------CCCEEEEEECccCCcccccH----HHHH-hcCCCCeEEEeCCcC
Confidence 889999999999887766666666777653 46799999999987644322 1222 245667999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 020714 301 AGLKALTQYLMEQFKD 316 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~ 316 (322)
.|++++++++.+.+..
T Consensus 146 ~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 146 RGIGDLLDAILELLPE 161 (429)
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988754
No 83
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=5e-21 Score=159.20 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
..++|+++|.+|||||||++++.........+..+.+. . .....+..+.+|||||...+.. ...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~--~--~~~~~~~~~~l~Dt~G~~~~~~------------~~~ 71 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--E--TVTYKNVKFNVWDVGGQDKIRP------------LWR 71 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce--E--EEEECCEEEEEEECCCCHHHHH------------HHH
Confidence 46899999999999999999998765443322222222 1 2234567899999999863211 112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cCCC-CCcEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLPG-YERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~ 293 (322)
..+..+|++++|+|+++..+. .....++..+. .....+.|+++|+||+|+.... ..++....+. .... ..+++
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEE
Confidence 346889999999999765332 23334444433 2223467899999999986532 1122222211 1111 12579
Q ss_pred EeecCCCCCHHHHHHHHHH
Q 020714 294 MTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~ 312 (322)
++||++|.|++++|+||.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999964
No 84
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.87 E-value=4e-21 Score=161.83 Aligned_cols=160 Identities=14% Similarity=0.185 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+||+++|.+|||||||++++..+.+.. ..++.+.... ...+..++ ..+.+|||+|...+.. . .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~--~~~i~~~~~~~~l~iwDt~G~~~~~~----------~--~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFM--EKTISIRGTEITFSIWDLGGQREFIN----------M--L 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCchhHHH----------h--h
Confidence 479999999999999999998876543 2222222221 11222333 5678999999864321 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----hhHHHHHHHHHhcCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~ 291 (322)
...+..+|++++|||+++..+.. .+..|+..+........| ++|+||+|+... ..........+++..+. +
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~--~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~ 142 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLN--SIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-P 142 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC-E
Confidence 13468899999999997654332 345566665443233455 688999999631 11223344556665664 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++|||++|.|++++|+++.+.+.+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999888753
No 85
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=2.5e-20 Score=176.49 Aligned_cols=163 Identities=27% Similarity=0.356 Sum_probs=121.9
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....+++|+++|.||||||||+|+|++.....++..+++|++.....+...+..+.+|||||+..+.. ......+.
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~gi~ 274 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERLGIE 274 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHHHHH
Confidence 34567899999999999999999999987777888899999888777777888999999999975321 11223445
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.+...+..+|++++|+|++++.+..+. ++..+.. .++|+++|+||+|+... .. ..+.+..+. ++++
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~---~~~piIlV~NK~Dl~~~--~~----~~~~~~~~~-~~~~ 340 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF----LIIDLNK---SKKPFILVLNKIDLKIN--SL----EFFVSSKVL-NSSN 340 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH----HHHHHhh---CCCCEEEEEECccCCCc--ch----hhhhhhcCC-ceEE
Confidence 666778899999999999876544332 4444432 25689999999999653 11 122222333 5899
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++ .||+++++.+.+.+.+
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHH
Confidence 99998 5999999988887765
No 86
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=8.7e-21 Score=179.81 Aligned_cols=174 Identities=25% Similarity=0.317 Sum_probs=121.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.+....|+|+|.||||||||+|+|++.+. .++..+++|.....+.+...+..+.++||||+..... .....-..
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-----~g~gLg~~ 229 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-----EGKGLGLD 229 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccc-----hhhHHHHH
Confidence 34456799999999999999999998753 4677899999988888877788999999999974321 11111223
Q ss_pred HHhhcccccEEEEEEeCCCCC--CCcHH---HHHHHHHHhccc--------CCCCCcEEEEEeCCCCCCChhHHHHHHHH
Q 020714 216 AWSAVNLFEVLMVVFDVHRHL--TSPDS---RVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKKDLLKVAEQ 282 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~--~~~~~---~~~~~l~~~~~~--------~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~ 282 (322)
.+..+..||++++|+|++... ..... .+...+..+... ....+|+|+|+||+|+.......+.....
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~ 309 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPE 309 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHH
Confidence 455678899999999996521 11111 222223322210 12357899999999997654333333333
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+.. .+. ++++|||++|.|+++|+++|.+.+...
T Consensus 310 l~~-~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 310 LEA-RGW-PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HHH-cCC-eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 433 244 699999999999999999999988664
No 87
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=4.3e-21 Score=160.11 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=104.8
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
|+++|.+|||||||++++.+..+..... + +...........++ ..+.+|||||...+.... ...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYV-P-TVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR------------PLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCC-C-cEEeeeeEEEEECCEEEEEEEEECCCCcccchhc------------hhh
Confidence 5799999999999999999876543221 1 11121111222333 357899999987543211 124
Q ss_pred cccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHhcC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKHL 286 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~~~ 286 (322)
+..+|++++|||+++..+.. .+ ..|+..+... .++.|+++|+||+|+..... ...+....++..
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFE--NVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred cCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 67889999999997643332 23 2355555433 34689999999999975322 222334455555
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+..++++|||++|.|++++|+.+.+.+.
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 66557999999999999999999998764
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=7.5e-21 Score=156.92 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|.+|||||||++++....+.... ...+.+..............+.+|||||...+.. ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~ 68 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT------------MHAS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh------------hhHH
Confidence 47999999999999999999876543221 1111121111111222234678999999864322 1113
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|++++.+. ..+..|+..+... .++.|+++|+||+|+... .. .....+....+. +++++||+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~--~~-~~~~~~~~~~~~-~~~~~Sa~ 141 (161)
T cd04124 69 YYHKAHACILVFDVTRKITY--KNLSKWYEELREY-RPEIPCIVVANKIDLDPS--VT-QKKFNFAEKHNL-PLYYVSAA 141 (161)
T ss_pred HhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCcEEEEEECccCchh--HH-HHHHHHHHHcCC-eEEEEeCC
Confidence 46788999999999765433 2344566665432 246789999999998532 11 222233333444 69999999
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q 020714 299 KGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~~ 317 (322)
+|.|++++++.+.+.+.+.
T Consensus 142 ~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 142 DGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999887654
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.86 E-value=5.8e-21 Score=157.27 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE--Ee--eCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
++|+++|.+|+|||||++++.+..+.... .+..+.+..... +. .....+.+|||||...+.. .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~-- 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY-KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA----------I-- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH----------h--
Confidence 47999999999999999999987543211 111112211111 21 2245789999999753211 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
....+..+|++++|+|+++..+. ..+..|+..+... .++.|+++|+||+|+........+....+.+..+. +++++
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 143 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESF--EAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRT 143 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEE
Confidence 12346789999999999764322 3455666665432 34688999999999976544333444555555565 69999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 020714 296 SGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~ 313 (322)
||++|.|+++++++|...
T Consensus 144 Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 144 SVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999764
No 90
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.86 E-value=7.3e-21 Score=158.15 Aligned_cols=162 Identities=17% Similarity=0.095 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..++|+++|.+|||||||++++.+..+... .+..+................+.+|||||...+.. ..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------------~~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS------------LR 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH------------hH
Confidence 468999999999999999999987665432 11222111111111222234678999999754211 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc----cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~----~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
...+..+|++++|||+++..+.. .+..|...+.. ....+.|+++|+||+|+... ....+....+....+..++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQ--NLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QVSTEEAQAWCRENGDYPY 148 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-ccCHHHHHHHHHHCCCCeE
Confidence 13467889999999997643332 23344443321 22346899999999999743 2222334444444555579
Q ss_pred EEeecCCCCCHHHHHHHHHHHh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l 314 (322)
+++||++|.|++++|+++.+.+
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
No 91
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.5e-21 Score=159.70 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=133.3
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....+||+++|.+|||||-|+.++...++.. ...+.|+...+....+.......+||||+|++++....
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit---------- 80 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT---------- 80 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc----------
Confidence 3457899999999999999999999887653 33344555444443343344567899999998764311
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
-.+++.|-+.++|||++.+.+.+ .+..||.++.....+++++++|+||+||.+.+.+..+....+++..+. .+++
T Consensus 81 --SaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~E 155 (222)
T KOG0087|consen 81 --SAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLE 155 (222)
T ss_pred --chhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEE
Confidence 14578899999999998876664 588999999998888999999999999999888888888888887777 4999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||..+.|+++.|+.+...+..
T Consensus 156 tSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 156 TSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred ecccccccHHHHHHHHHHHHHH
Confidence 9999999999999998887765
No 92
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.86 E-value=7.2e-21 Score=159.15 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+.++..+.+.... ..+........+...+ ..+.+|||||...+.. +. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----------LR--P 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcC--CCcceeeeEEEEEECCEEEEEEEEECCCchhhhh----------hh--h
Confidence 68999999999999999999876653211 1111111111122333 5678999999864422 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHh
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (322)
..+..+|++|+|||++++.+... +. .|+..+... .++.|+++|+||+|+..... ........++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~--~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFEN--VRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 24678999999999977543332 32 355444432 24689999999999965321 2223344455
Q ss_pred cCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
...+..++++|||++|.|++++|+.+.+.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 54554469999999999999999999864
No 93
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.6e-20 Score=179.18 Aligned_cols=160 Identities=25% Similarity=0.368 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++|+++|.||||||||+|+|.+.+.+.+...+++|++.........+..+.+|||||+..... .........+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~----~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD----GFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch----hHHHHHHHHHHHH
Confidence 479999999999999999999988777888899998887777777788999999999975211 1222233444556
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..+|++++|+|++.+.+..+..+..++... +.|+++|+||+|+....... ..+.. .++.+++++||++
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSa~~ 146 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEEADA----YEFYS-LGLGEPYPISAEH 146 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccchhhH----HHHHh-cCCCCCEEEEeeC
Confidence 7889999999999877666666666777654 46799999999975532211 22222 3555689999999
Q ss_pred CCCHHHHHHHHHHHh
Q 020714 300 GAGLKALTQYLMEQF 314 (322)
Q Consensus 300 g~gi~el~~~i~~~l 314 (322)
|.|+++++++|....
T Consensus 147 g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 147 GRGIGDLLDAILEEL 161 (435)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998743
No 94
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=5.1e-21 Score=154.25 Aligned_cols=168 Identities=17% Similarity=0.111 Sum_probs=122.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++|.+.|.+|||||||+|++...++..-. .+.|...-+....+......+++|||+|++.|....
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg----------- 75 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG----------- 75 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc-----------
Confidence 45789999999999999999999877654221 222222222222233334567899999998765422
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEeCCCCCCC--hhHHHHHHHHHhcCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP----PKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGY 289 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~----~~~p~ivV~NK~Dl~~~--~~~~~~~~~~~~~~~~~ 289 (322)
...++.+|.+++|+|+....+... +..|-+++..+.. ..-|+|+++||+|+... +.+.......++...+.
T Consensus 76 -~aFYRgaDcCvlvydv~~~~Sfe~--L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 76 -VAFYRGADCCVLVYDVNNPKSFEN--LENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred -cceecCCceEEEEeecCChhhhcc--HHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 245799999999999977655543 4445455443333 34789999999999763 45667778888888888
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
.|+|++|||.+.|+++.|+.+.+.....+
T Consensus 153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 153 IPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 89999999999999999999998877654
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=1.6e-20 Score=154.27 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+||+++|.+|||||||+|++.+..+.... .+.++........... ...+.+|||||...+.. . .-
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~--~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----------L--GP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----------h--hH
Confidence 47999999999999999999987654321 1222222222222222 34688999999753211 1 11
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|+++..+. .....|+..+......+.|+++|+||+|+........+....+....+. +++++||
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~ 144 (162)
T cd04123 68 IYYRDADGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSA 144 (162)
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 235678999999999664322 3344555555544334688999999999975433222333334444454 5899999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 020714 298 LKGAGLKALTQYLMEQF 314 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l 314 (322)
++|.|+++++++|.+.+
T Consensus 145 ~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 145 KTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 96
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.86 E-value=6.5e-21 Score=159.01 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|+|||||++++.+..+.... ..+........+..++ ..+.+|||||...+.....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------------ 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeeEEEEEECCEEEEEEEEeCCCccccccccc------------
Confidence 47999999999999999999887654221 1222222111222333 3467999999875432111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHhc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKH 285 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~~ 285 (322)
..+..+|++++|+|+.+..+..... ..|+..+... .++.|+++|+||+|+.+... ........++.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~-~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVK-EEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 2467889999999997654433221 1344444322 45689999999999865421 11223444555
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 286 LPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
..+..++++|||++|.|++++|+.+++.+
T Consensus 145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 145 EIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 55655799999999999999999998865
No 97
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.86 E-value=2.5e-21 Score=174.32 Aligned_cols=159 Identities=24% Similarity=0.344 Sum_probs=120.7
Q ss_pred chHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCC
Q 020714 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTD 85 (322)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~ 85 (322)
.+||.|||.++.++... ..+.+|+++++.|+|.|... + ||+|+++++..+.|..++.+.+.
T Consensus 4 ~~wfpgHm~k~~~~l~~--~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 4 IQWFPGHMAKARREIKE--NLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred CcCcHHHHHHHHHHHHH--HhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 57999999999999876 67789999999999999877 4 79999877667889999987666
Q ss_pred eEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 86 ~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
.+++.++ ++.+..++.+. ...++..... ....+......++++++|.||||||||+|+|.+...
T Consensus 82 ~vi~vSa~~~~gi~~L~~~----------l~~~l~~~~~-----~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 82 KALAINAKKGQGVKKILKA----------AKKLLKEKNE-----RRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred eEEEEECCCcccHHHHHHH----------HHHHHHHHHh-----hhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 7788888 77777766221 1111111110 001112234678999999999999999999999998
Q ss_pred eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 165 ~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
+.++..+|+|+..+... .+..+.++||||+..+.
T Consensus 147 ~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 147 AKTGNRPGVTKAQQWIK---LGKGLELLDTPGILWPK 180 (287)
T ss_pred cccCCCCCeEEEEEEEE---eCCcEEEEECCCcCCCC
Confidence 89999999999876432 24578999999997654
No 98
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=1e-20 Score=157.11 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++.+..+.... ..++.......+... ...+.+|||||...+.. .. .
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~---~--- 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY--DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA------MR---E--- 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcchheEEEEEEECCEEEEEEEEeCCCcccchh------hh---H---
Confidence 68999999999999999999877643221 112211212222222 35678999999875432 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..++++++|+|++++.+... ...|...+.. ....+.|+++|+||+|+........+....+...++..+++++|
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNE--LGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETS 145 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHH--HHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEee
Confidence 23466799999999976433322 3333333322 12346889999999999765433333344444445545799999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 020714 297 GLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~ 315 (322)
|++|.|++++|+++...+.
T Consensus 146 A~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 146 ARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987654
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.86 E-value=9.5e-21 Score=154.47 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|.+|||||||+|++.+...... ....+.+..............+.+||+||...+. .....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR------------SITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH------------HHHHH
Confidence 4799999999999999999998776543 2222222222221121234678899999975321 12223
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|+++.. ....+..|+..+.....+..|+++|+||+|+........+....+....+. +++++||+
T Consensus 69 ~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~ 145 (159)
T cd00154 69 YYRGAHGAILVYDITNRE--SFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAK 145 (159)
T ss_pred HhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEecC
Confidence 467789999999996532 223455567666655445688999999999973333333444444444444 69999999
Q ss_pred CCCCHHHHHHHHH
Q 020714 299 KGAGLKALTQYLM 311 (322)
Q Consensus 299 ~g~gi~el~~~i~ 311 (322)
+|.|+++++++|.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999986
No 100
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.86 E-value=1.1e-20 Score=159.58 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
++|+++|.+|||||||++++.+..+.... ..+............ ...+.+|||||...+.. . .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~----------~--~ 66 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY--VPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR----------L--R 66 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCC--CCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH----------H--H
Confidence 47999999999999999999987654221 111111111112222 34678999999764311 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----hHHHHHHHHHhcCCCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~ 292 (322)
...+..+|++++|+|+++..+..+. ...|+..+... .++.|+++|+||+|+.... .........+....+..++
T Consensus 67 ~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (187)
T cd04132 67 PLSYPDVDVLLICYAVDNPTSLDNV-EDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY 144 (187)
T ss_pred HHhCCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEE
Confidence 1246789999999999764433221 12355444322 2468899999999996532 1223344555555555469
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+++||++|.|++++|+.+.+.+....
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999887753
No 101
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=168.94 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=126.9
Q ss_pred ccccccCCCCCCCchHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCC
Q 020714 10 LAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQ 72 (322)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~ 72 (322)
+.+..+++...--..||.|||++|.++... .++++|++||++|||||+++ | ||.||+++..
T Consensus 13 ~~~~~~~~~~~~~~~wfpgHmakalr~i~~--~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~ 90 (335)
T KOG2485|consen 13 AGDAVIFAKYNMPRRWFPGHMAKALRAIQN--RLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKE 90 (335)
T ss_pred hhhcccccccCCccccCchHHHHHHHHHHh--hcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchh
Confidence 344555666666789999999999998877 88899999999999999999 6 7999999888
Q ss_pred hhhHHHHHHhhCCeE-EEeecccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCC
Q 020714 73 EPTWDEKYRERTDRI-VFGEEAQK---GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAP 148 (322)
Q Consensus 73 ~~~w~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~ 148 (322)
.+....+++.+...- ++.+.... +...++ .++.... ++....-......++++|+|.|
T Consensus 91 ~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~--------------~il~~~~----~~l~r~irt~~~~~~vmVvGvP 152 (335)
T KOG2485|consen 91 QKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLL--------------KILTILS----EELVRFIRTLNSEYNVMVVGVP 152 (335)
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhhhccccHH--------------HHHHHHH----HHHHHhhcccCCceeEEEEcCC
Confidence 888999998775543 33333222 233331 1111111 1111111234568999999999
Q ss_pred CCchhHHHHHHhC-----CeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 149 NAGKSSIINYMVG-----TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 149 ~vGKStlin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
|||||||||++.. .+.+.++..+|+|+.....+.......++++||||+..+.
T Consensus 153 NVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 153 NVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred CCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 9999999998753 3677899999999998887766778889999999998763
No 102
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.8e-20 Score=161.55 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=110.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-C--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-A--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.+||+++|.+|||||||++++.+..+..... +..+.+.....+.. . ...+.+|||||...+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~------------~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS------------I 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH------------H
Confidence 3789999999999999999999876543322 22222222211222 2 34688999999753211 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|||+++..+. ..+..|+..+.... ....|+++|+||+|+........+....++...+. ++++
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf--~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e 145 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESF--EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIE 145 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEE
Confidence 12346788999999999765333 24556666654322 22467899999999976544444445555555564 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|++++|++|.+.+.++
T Consensus 146 ~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 146 TSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 103
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=178.54 Aligned_cols=161 Identities=25% Similarity=0.365 Sum_probs=124.6
Q ss_pred CchHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhC
Q 020714 22 LNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERT 84 (322)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~ 84 (322)
..+|+.+||.++..++.+ ..+.+|+|+++.|||+|..+ + ||+||+++...+.|.++|.+..
T Consensus 13 ~i~~~~g~~~k~~~~~~~--~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKE--VLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred cccCCCCchHHHHHHHHH--hcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 467889999999888877 77789999999999999999 5 7999999999999999999985
Q ss_pred -CeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 85 -DRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 85 -~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...++.++ ++.+...+.+ ....+....++... .+.......+++++|.||||||||||+|.++
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~----------~~~~~~~~~i~~~~-----~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k 155 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRK----------ALEKLSEEKIKRLK-----KKGLLKRKIRVGVVGYPNVGKSTLINRLLGK 155 (322)
T ss_pred CCccEEEEeecccCccchHH----------HHHHHHHHHHHHHh-----hcCCCccceEEEEEcCCCCcHHHHHHHHhcc
Confidence 44577777 6666665511 11111111111100 1223455688999999999999999999999
Q ss_pred eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714 163 KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 163 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
..+.++..||+|...+.... ...+.|+||||+..+..
T Consensus 156 ~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 156 KVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred cceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCCc
Confidence 99999999999999887543 34589999999997654
No 104
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.86 E-value=1.5e-20 Score=156.55 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=105.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+|+++|.+|||||||++++.++.+... .+..+ .......+... ...+.+|||||...+.. ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQERFKC------------IAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHHHHh------------hHH
Confidence 689999999999999999998765321 12222 12111112222 34689999999864311 112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|+|+++..+. ..+..|+..+..... ...|+++|+||+|+..... ..++....+....+. ++++
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e 144 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWS 144 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEE
Confidence 347889999999999653222 345567766543322 2467999999999965422 123334444444454 5899
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|++++|+.|.+.+.+
T Consensus 145 ~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 145 VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=8.7e-21 Score=157.52 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+++|++........ .+.......... .....+.+|||||+..+.....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~------------ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV--PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP------------ 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeeEEEEEECCEEEEEEEEeCCCcccccccch------------
Confidence 479999999999999999999876532111 111111111122 2245689999999875422110
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-----------HHHHHHHHhcC
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-----------LLKVAEQFKHL 286 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-----------~~~~~~~~~~~ 286 (322)
..+..+|++++|+|++++.+... ....|+..+.... ++.|+++|+||+|+...... .......+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFEN-VKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 23467899999999976433222 2233454444322 36889999999999765432 12334445555
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
.+..+++++||++|.|+++++++|.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 55557999999999999999999876
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=2e-20 Score=156.17 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=102.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||++++.+..+....+..+... ..+...+..+.+|||||...+. . ..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~l~D~~G~~~~~---------~---~~ 75 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI----KTLEYEGYKLNIWDVGGQKTLR---------P---YW 75 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEECCEEEEEEECCCCHHHH---------H---HH
Confidence 356889999999999999999999875544333333221 1233456788999999975321 1 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CCCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~ 292 (322)
...+..+|++++|+|+++..+. .....++..+. .....+.|+++|+||+|+.... ..++....+.. .....++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 76 RNYFESTDALIWVVDSSDRLRL--DDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRI 152 (173)
T ss_pred HHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEE
Confidence 2346789999999999764322 22333444432 2233468899999999997542 22222222211 0122369
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 020714 293 FMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~ 312 (322)
+++||++|.|+++++++|..
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 107
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-20 Score=173.49 Aligned_cols=180 Identities=23% Similarity=0.274 Sum_probs=138.9
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++.|+++|.||||||||+|+|.+.+...+++.+|||++.....+...|.++.|.||+|+.+... ......+++
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~gI~ 340 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEALGIE 340 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHHhHH
Confidence 45567999999999999999999999999999999999999999999999999999999999987221 233456788
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC------CCcEEEEEeCCCCCCCh-hHHHHHHHHHh--c
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP------KQKRVLCMNKVDLVTKK-KDLLKVAEQFK--H 285 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~------~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~--~ 285 (322)
++...+..+|++++|+|+....++++..+.+.+...+..... ..|++++.||+|+...- +.......+.. .
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~ 420 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEG 420 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccccc
Confidence 888999999999999999666677776666777666543222 37899999999998751 11110011111 1
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 286 LPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
...+..+.++||++++|++.|.+.|.+.+...
T Consensus 421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 421 RSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred CcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 11233456699999999999999998877653
No 108
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.85 E-value=1.9e-20 Score=155.75 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=103.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|||||||++++.+..+.. ...|...........+..+.+|||||...+.. .....+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~----~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------~~~~~~ 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ----PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------LWKHYY 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC----cCCcCceeEEEEEECCEEEEEEECCCChhcch------------HHHHHh
Confidence 48899999999999999999875432 12222222222445677899999999864321 122346
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC-----CCcEEE
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-----YERIFM 294 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~ 294 (322)
..+|++++|+|.+++.+. .....++..+... ...+.|+++|+||+|+... ...++ ...+..... ...+++
T Consensus 65 ~~ad~ii~V~D~s~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 65 LNTQAVVFVVDSSHRDRV--SEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEE-MTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred ccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHH-HHHHhCCccccCCCcEEEEe
Confidence 788999999999764322 2344555555432 2335789999999999643 11222 222222221 114788
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcC
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
|||++|.||+++|+||.+.+....
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999998877653
No 109
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.85 E-value=5.6e-21 Score=171.17 Aligned_cols=158 Identities=24% Similarity=0.347 Sum_probs=119.6
Q ss_pred hHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCCe
Q 020714 24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTDR 86 (322)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~~ 86 (322)
+||.|||.++..+... ..+.+|+++++.|++.|... + ||+|+++++....|..++...+..
T Consensus 2 ~WfpgHm~k~~~~~~~--~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~ 79 (276)
T TIGR03596 2 QWFPGHMAKARREIKE--KLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIK 79 (276)
T ss_pred ccChHHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCe
Confidence 6999999999999877 67789999999999999887 4 799998877678899999776667
Q ss_pred EEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeee
Q 020714 87 IVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (322)
Q Consensus 87 i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~ 165 (322)
+++.++ ++.+...+.+.. ...+.... .....+......++++++|.||||||||+|+|.+...+
T Consensus 80 vi~iSa~~~~gi~~L~~~i----------~~~~~~~~-----~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~ 144 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAA----------KKLLKEKN-----EKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVA 144 (276)
T ss_pred EEEEECCCcccHHHHHHHH----------HHHHHHhh-----hhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 788888 777777662211 11111110 00011122345789999999999999999999999888
Q ss_pred eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 166 ~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
.++..+|+|+..+...+ +..+.++||||+..+.
T Consensus 145 ~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 145 KVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPK 177 (276)
T ss_pred ccCCCCCeecceEEEEe---CCCEEEEECCCcccCC
Confidence 89999999988764332 3468999999997654
No 110
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=1.8e-20 Score=161.46 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=110.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..++|+++|++|||||||++++++..+.... ...+.+... ..+...+ ..+.+|||||...+..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~--~~i~~~~~~i~l~l~Dt~G~~~~~~------------ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMITIDNKPIKLQIWDTAGQESFRS------------ 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE--EEEEECCEEEEEEEEeCCCcHHHHH------------
Confidence 3589999999999999999999987654321 222222211 1222233 4578999999763211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|+++..+. ..+..|+..+.....+..|+++|+||+|+.............+...++. ++++
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~--~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 147 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFME 147 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEE
Confidence 122345778999999999764333 2344555554433334688999999999976543333444555555555 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|++++|+++.+.+.++
T Consensus 148 ~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 148 ASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888753
No 111
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.85 E-value=8e-21 Score=156.36 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||+.++....+..... + +.......+..++ ..+.+|||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~-~--~~~~~~~~i~~~~~~~~l~i~D~~g~~~~----------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES-P--EGGRFKKEVLVDGQSHLLLIRDEGGAPDA----------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC-C--CccceEEEEEECCEEEEEEEEECCCCCch-----------------
Confidence 479999999999999999987765443221 1 1111112233344 45789999998521
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCC--ChhHHHHHHHHHhcCCCCCcEEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|||++++.+.+. +..|+..+... ..++.|+++|+||+|+.. .+.........+++..+...+++
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~--~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 138 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQT--VYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE 138 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence 12356799999999987655544 33455555433 234678999999999853 23344444555554443336999
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 020714 295 TSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~ 313 (322)
|||++|.||+++|+.+.+.
T Consensus 139 ~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 139 TCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EecCCCCCHHHHHHHHHhh
Confidence 9999999999999999864
No 112
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.85 E-value=1.7e-20 Score=154.48 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|++|||||||+++++...+.. ...+++..........+ ...+.+|||||...+.. ...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA------------IRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH------------HHH
Confidence 479999999999999999998765432 12222222222222233 34688999999764311 111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++++|+++..+. .....+...+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S 143 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESF--TATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETS 143 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEee
Confidence 345778999999999654322 1233333333322 134688999999999976322222222233333344 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+.+
T Consensus 144 a~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 144 AKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987753
No 113
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.85 E-value=4.4e-21 Score=151.03 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=124.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...+||+++|.+|||||||+-++....+....+. .|+........+.....++.||||+|++.|...-+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTp---------- 78 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTP---------- 78 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCH----------
Confidence 3569999999999999999999998776543332 33333322222222345678999999987754322
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.+++.|.++|+|+|++.+.+... +..|++++... ..+++-.++|+||+|....+.+..++...|+..+++- +++
T Consensus 79 --SyyRgaqGiIlVYDVT~Rdtf~k--Ld~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE 153 (209)
T KOG0080|consen 79 --SYYRGAQGIILVYDVTSRDTFVK--LDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIE 153 (209)
T ss_pred --hHhccCceeEEEEEccchhhHHh--HHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEE
Confidence 46789999999999987655543 45677777654 3345667899999998776777777888888888875 899
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++.+|++..|+.++..+.+
T Consensus 154 ~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred cchhhhccHHHHHHHHHHHHhc
Confidence 9999999999999999988865
No 114
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=2.5e-20 Score=153.59 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
+||+++|.+|||||||++++..+.+....+..+.. . .........+.+|||||+..+. ......
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~--~--~~~~~~~~~~~l~D~~G~~~~~------------~~~~~~ 64 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--V--ETVEYKNISFTVWDVGGQDKIR------------PLWRHY 64 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcc--e--EEEEECCEEEEEEECCCCHhHH------------HHHHHH
Confidence 47999999999999999999765554322222221 1 1233456789999999985321 111234
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc--C-CCCCcEEEe
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERIFMT 295 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~~~i 295 (322)
+..+|++++|+|+++..+. .....++..+. .......|+++|+||+|+..... ..+....+.. . .....++++
T Consensus 65 ~~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQAT 141 (159)
T ss_pred hcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEe
Confidence 7889999999999764322 22334343332 22223578999999999965321 2222222211 1 111246799
Q ss_pred ecCCCCCHHHHHHHHHH
Q 020714 296 SGLKGAGLKALTQYLME 312 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~ 312 (322)
||++|.|++++|+||.+
T Consensus 142 Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 142 CATSGDGLYEGLDWLSN 158 (159)
T ss_pred eCCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 115
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.85 E-value=2.7e-20 Score=153.64 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCC--eeee-ecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGT--KVAA-VSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~--~~~~-~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
++|+++|++|||||||++++... .+.. .....|........... .....+.+|||||...+. ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~-- 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS---------DMV-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH---------HHH--
Confidence 47999999999999999999864 2221 11111111111111111 223678999999975321 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|+|+++..+. ..+..|+..+.... .+.|+++|+||+|+.............+....+. +++++
T Consensus 70 -~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (164)
T cd04101 70 -SNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKT 144 (164)
T ss_pred -HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEE
Confidence 1345788999999999764322 23456666655432 4578999999999976543222223334444444 59999
Q ss_pred ecCCCCCHHHHHHHHHHHh
Q 020714 296 SGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l 314 (322)
||++|.|+++++++|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 145 SALRGVGYEEPFESLARAF 163 (164)
T ss_pred eCCCCCChHHHHHHHHHHh
Confidence 9999999999999998865
No 116
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=3.5e-20 Score=185.90 Aligned_cols=163 Identities=28% Similarity=0.375 Sum_probs=123.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
..+|+++|.||||||||+|+|++.+...+...+|+|++.........+..+.+|||||+...... ........+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~----~~~~~~~~~~~ 350 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG----IDSAIASQAQI 350 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc----HHHHHHHHHHH
Confidence 46899999999999999999999888888889999998877766677888999999998743221 12233445556
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+..+|++++|+|++.+.+..+..+..++.. .++|+++|+||+|+....... ..+.. .+...++++||+
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~------~~~pvIlV~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSA~ 419 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRR------AGKPVVLAVNKIDDQASEYDA----AEFWK-LGLGEPYPISAM 419 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHh------cCCCEEEEEECcccccchhhH----HHHHH-cCCCCeEEEECC
Confidence 6788999999999987666655555555543 257899999999986532211 22222 234457899999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 020714 299 KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~ 316 (322)
+|.||++++++|.+.+..
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999998754
No 117
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=1.1e-20 Score=157.51 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=107.7
Q ss_pred EEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhccc
Q 020714 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (322)
Q Consensus 144 v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (322)
++|.+|||||||+|+|.+... .++..+++|........... +..+.+|||||+....... .. .....+..+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~~---~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--RG---LGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--CC---ccHHHHHHHhc
Confidence 579999999999999999875 45666777777666555566 8899999999985322111 00 11123345667
Q ss_pred ccEEEEEEeCCCCC----CCcHHHHHHHHHHhcccC-------CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714 223 FEVLMVVFDVHRHL----TSPDSRVIRLIERMGKQA-------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 223 ad~ii~v~D~s~~~----~~~~~~~~~~l~~~~~~~-------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+|++++|+|+++.. .........+...+.... ....|+++|+||+|+................. ...+
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~ 153 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE-EGAE 153 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-CCCC
Confidence 89999999997652 122223333333333221 13578999999999976543322211222222 3346
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~ 313 (322)
++++||++|.|++++++++...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999999999998764
No 118
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=2.4e-20 Score=153.47 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|++|||||||+|++.+..... ..+..+.+..............+.+|||||...+.. ....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT------------LTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh------------hhHH
Confidence 479999999999999999999876543 333333333222221222235689999999754311 1112
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
.++.+|++++|+|+++..+.. .+..|+..+... ...+.|+++|+||+|+........ ....+....++ +++++||
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~-~~~~~~~~~~~-~~~~~Sa 144 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVGNKIDKENREVTRE-EGLKFARKHNM-LFIETSA 144 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHH-HHHHHHHHcCC-EEEEEec
Confidence 357889999999997644332 344455544332 234688999999999974432222 23334444455 5999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 020714 298 LKGAGLKALTQYLMEQ 313 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~ 313 (322)
++|.|++++++++.+.
T Consensus 145 ~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 145 KTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 119
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.85 E-value=9.1e-21 Score=156.85 Aligned_cols=159 Identities=14% Similarity=0.213 Sum_probs=100.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|.+|||||||+++++...+.. ....++..........++ ..+.+|||||...+.. . ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~-------~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG--EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT----E-------QLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc--ccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----c-------hHHH
Confidence 48999999999999999998765432 112222111112222333 3578999999874211 0 1112
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
.+..+|++++|+|+++..+.. .+..|+..+.... ..+.|+++|+||+|+.............++...+. +++++|
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 144 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFD--EISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVS 144 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeC
Confidence 356789999999997654332 2333433333221 33688999999999865433233334444444454 699999
Q ss_pred cCCCC-CHHHHHHHHHHHhh
Q 020714 297 GLKGA-GLKALTQYLMEQFK 315 (322)
Q Consensus 297 a~~g~-gi~el~~~i~~~l~ 315 (322)
|++|. |++++|+.|.+.+.
T Consensus 145 a~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 145 AAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCCchhHHHHHHHHHHHHh
Confidence 99994 99999999998764
No 120
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=3.2e-20 Score=156.18 Aligned_cols=159 Identities=15% Similarity=0.155 Sum_probs=104.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||++++....+....++.+... ......+..+.+|||||...+ ...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~----~~~~~~~~~~~i~D~~Gq~~~-------------~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDKI-------------RPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE----EEEEECCEEEEEEECCCCHHH-------------HHH
Confidence 345899999999999999999998765543323222221 123456778999999997532 112
Q ss_pred -HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC----CC
Q 020714 217 -WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG----YE 290 (322)
Q Consensus 217 -~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~ 290 (322)
...+..+|++|+|+|+++..+. .....++..+. ....++.|+++|+||+|+..... .++....+ .... ..
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~--~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l-~l~~~~~~~~ 153 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL-GLHSLRQRHW 153 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC-HHHHHHHh-CccccCCCce
Confidence 2346889999999999764322 22333444432 22334688999999999976432 22222222 1111 11
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.++++||++|+|++++++||.+.+..
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999988765
No 121
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.85 E-value=2.5e-20 Score=158.29 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+||+++|.+|||||||++++.+..+.. ..+..+.+... ..+...+ ..+.+|||||...+.. ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~D~~G~~~~~~----------~~- 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVA--KRMVVGERVVTLGIWDTAGSERYEA----------MS- 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEE--EEEEECCEEEEEEEEECCCchhhhh----------hh-
Confidence 479999999999999999999876542 22222221111 1222333 3567999999864321 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----hHHHHHHHHHhcCCCCCc
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 291 (322)
...+..+|++++|||+++..+. ..+..|+..+... .++.|+++|+||+|+.... .........+....+. +
T Consensus 68 -~~~~~~~d~iilv~d~~~~~s~--~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~ 142 (193)
T cd04118 68 -RIYYRGAKAAIVCYDLTDSSSF--ERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-Q 142 (193)
T ss_pred -HhhcCCCCEEEEEEECCCHHHH--HHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-e
Confidence 1235688999999999764322 2344566665433 2367899999999986432 1111223344444444 5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++++||++|.|+++++++|.+.+.++
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999888653
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.85 E-value=2.3e-20 Score=154.56 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=99.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeee---ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+|+++|.+|+|||||+|+|.+..... ......+|.......+...+..+.+|||||+..+. ....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR------------SLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH------------HHHH
Confidence 48899999999999999998653221 11122233333333344567889999999986321 1112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---C--CCCc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---P--GYER 291 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---~--~~~~ 291 (322)
..+..+|++++|+|+++..+ ......++..+.. ....+.|+++|+||+|+.... ...+....+... . ...+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEALEGVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC-CHHHHHHHhccccccccCCceE
Confidence 34678899999999965322 2233344444332 223468899999999986642 122222222221 1 1236
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q 020714 292 IFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~ 312 (322)
++++||++|.|++++++||.+
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999964
No 123
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.85 E-value=3.3e-20 Score=155.32 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
..++|+++|.+|||||||++++..+.+....++.+ ... ......+..+.+|||||...+ ...+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~--~~~--~~~~~~~~~l~l~D~~G~~~~-------------~~~~ 74 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIG--FNV--ETVTYKNISFTVWDVGGQDKI-------------RPLW 74 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc--cce--EEEEECCEEEEEEECCCChhh-------------HHHH
Confidence 46899999999999999999997655432222112 111 123345678899999997532 1122
Q ss_pred -hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cCC-CCCcE
Q 020714 218 -SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLP-GYERI 292 (322)
Q Consensus 218 -~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~~-~~~~~ 292 (322)
..+..+|++++|+|++++.+. .....++..+. .....+.|+++|+||+|+..... ..+....+. ... ....+
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 151 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRI--DEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYI 151 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEE
Confidence 336889999999999764322 23334444443 22234678999999999965421 112222221 111 11136
Q ss_pred EEeecCCCCCHHHHHHHHHHHhh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+++||++|.|++++++||.+.+.
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999988753
No 124
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.85 E-value=1e-21 Score=175.96 Aligned_cols=161 Identities=22% Similarity=0.229 Sum_probs=124.2
Q ss_pred HHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhh
Q 020714 25 LFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRER 83 (322)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~ 83 (322)
...-.|++.-..+.+ .+|||+||.|||+|..+ + ||+||++++.++.|+.|++..
T Consensus 131 ~s~kaY~ke~rkvve-----~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 131 ESKKAYDKEFRKVVE-----ASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE 205 (435)
T ss_pred hhHHHHHHHHHHHHh-----hhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence 333445555555444 89999999999999999 5 799999999999999999999
Q ss_pred CCeEEEeeccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 84 TDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 84 ~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+++++|.++++.+..+. ........+..+.+-..+.... .....++.++++|+|+|||||||+||+|..++
T Consensus 206 ~ptv~fkast~~~~~~~----~~~~~s~c~gae~l~~~lgny~-----~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k 276 (435)
T KOG2484|consen 206 GPTVAFKASTQMQNSNS----KNLQSSVCFGAETLMKVLGNYC-----RKGELKTSIRVGIIGYPNVGKSSVINSLKRRK 276 (435)
T ss_pred CCcceeecccccccccc----cccccchhhhHHHHHHHhcCcc-----cccccCcceEeeeecCCCCChhHHHHHHHHhc
Confidence 99999999977766642 0111113344444444443322 22346788999999999999999999999999
Q ss_pred eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714 164 VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 164 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
.+.++..||.|+..+.. ..+..+.|+|.||+.....
T Consensus 277 ~C~vg~~pGvT~smqeV---~Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 277 ACNVGNVPGVTRSMQEV---KLDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred cccCCCCccchhhhhhe---eccCCceeccCCceeecCC
Confidence 99999999999987764 4467889999999986554
No 125
>PRK04213 GTP-binding protein; Provisional
Probab=99.85 E-value=8.2e-20 Score=156.19 Aligned_cols=171 Identities=18% Similarity=0.293 Sum_probs=104.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH--
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES-- 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-- 215 (322)
..++|+++|.+|||||||+|+|.+..+ .++..+++|...... .. ..+.+|||||+.... ..+.. ....++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~~--~~--~~~~l~Dt~G~~~~~-~~~~~-~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNHY--DW--GDFILTDLPGFGFMS-GVPKE-VQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceEE--ee--cceEEEeCCcccccc-ccCHH-HHHHHHHHH
Confidence 457899999999999999999998764 355667777664432 22 268999999974322 11111 1122222
Q ss_pred --HHh-hcccccEEEEEEeCCCCCCCcH--------HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHH
Q 020714 216 --AWS-AVNLFEVLMVVFDVHRHLTSPD--------SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQF 283 (322)
Q Consensus 216 --~~~-~~~~ad~ii~v~D~s~~~~~~~--------~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~ 283 (322)
.+. ....++++++|+|.+......+ ..-..++..+.. .+.|+++|+||+|+..... ...++...+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHh
Confidence 222 3456789999999864321100 000112222222 2578999999999975431 222222222
Q ss_pred hcCCC----CCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 284 KHLPG----YERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 284 ~~~~~----~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
..... ..+++++||++| |+++++++|.+.+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 11000 025899999999 999999999998876543
No 126
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.85 E-value=3.2e-20 Score=161.16 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCc-eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNT-TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++..+.+. ......+. ........+......+.+|||||.... ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------------~~~-- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW------------TED-- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH------------HHh--
Confidence 47999999999999999999766553 22111211 111121122223456889999998610 111
Q ss_pred hhcc-cccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 218 SAVN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 218 ~~~~-~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
..+. .+|++++|||+++..+.. .+..|+..+... ...+.|+++|+||+|+.....+..+....++..++. +++++
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~--~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~ 143 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFE--RASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIET 143 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEe
Confidence 1223 789999999997754332 233444444322 124688999999999976554444444555555555 59999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.||+++|++|.+.+..
T Consensus 144 SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 144 SAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998863
No 127
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=3.2e-20 Score=153.96 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||++++.+..+... ..+..+.+.....+...+ ..+.+|||||...+.. .
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------------~ 72 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS------------I 72 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH------------H
Confidence 358899999999999999999986554321 112122222222233334 4578999999753211 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.............+..... .+++++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~ 149 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESF--RCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLET 149 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 12346788999999999654322 234456555543333457899999999997654433344445554444 369999
Q ss_pred ecCCCCCHHHHHHHHHHHh
Q 020714 296 SGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l 314 (322)
||++|.|+++++++|.+.+
T Consensus 150 Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 150 SAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 128
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=3.3e-20 Score=163.35 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|||||||++++++..+.. ....++.+.....+...+ ..+.||||+|...+.. ...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~----------~~~-- 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA----------MRR-- 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----------HHH--
Confidence 479999999999999999998776542 112222222222233334 5678999999864321 111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc---------cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK---------QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG 288 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~---------~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 288 (322)
..+..+|++|+|||+++..+.. .+..|+..+.. ....+.|+++|+||+|+.....+.......+.....
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~--~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~ 144 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFE--EVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDE 144 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcC
Confidence 2356789999999997654332 23344433321 123468999999999997533322222333322221
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 289 YERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 289 ~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
...++++||++|.|++++|++|.+.+.
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 235999999999999999999998763
No 129
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=3.2e-20 Score=152.70 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=97.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCee--eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|.+|||||||++++.+... ....+..+.+.. .+...+..+.+|||||...+.. ....
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~~~~~~~~l~Dt~G~~~~~~------------~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFEKGNLSFTAFDMSGQGKYRG------------LWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEEECCEEEEEEECCCCHhhHH------------HHHH
Confidence 478999999999999999998642 223333333221 2334567889999999864211 1113
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCChhHHHHHHHHH--hcCCC-CCcE
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPG-YERI 292 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~ 292 (322)
.+..+|++++|+|+++..+. .....++..+... ...+.|+++|+||+|+..... ..+....+ ..... ..++
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRL--VVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHI 141 (162)
T ss_pred HHccCCEEEEEEeCCcHHHH--HHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEE
Confidence 46789999999999764322 1223344443221 123689999999999975422 11211111 11111 1148
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 020714 293 FMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~ 312 (322)
+++||++|.|++++++||.+
T Consensus 142 ~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 142 FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeeCCCCCchHHHHHHHhc
Confidence 99999999999999999865
No 130
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=3.4e-20 Score=149.53 Aligned_cols=140 Identities=21% Similarity=0.286 Sum_probs=94.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|||||||+|++.+..... . .|.. ....+ .+|||||... .....+......+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~----~-~t~~-----~~~~~---~~iDt~G~~~--------~~~~~~~~~~~~~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY----K-KTQA-----VEYND---GAIDTPGEYV--------ENRRLYSALIVTA 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc----c-ccee-----EEEcC---eeecCchhhh--------hhHHHHHHHHHHh
Confidence 79999999999999999999875421 1 1111 11222 6899999731 1112244444568
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..+|++++|+|++++.+.... .+.... ..|+++|+||+|+...... .+....+.+..+..+++++||++|
T Consensus 61 ~~ad~vilv~d~~~~~s~~~~---~~~~~~------~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 61 ADADVIALVQSATDPESRFPP---GFASIF------VKPVIGLVTKIDLAEADVD-IERAKELLETAGAEPIFEISSVDE 130 (142)
T ss_pred hcCCEEEEEecCCCCCcCCCh---hHHHhc------cCCeEEEEEeeccCCcccC-HHHHHHHHHHcCCCcEEEEecCCC
Confidence 899999999999877665442 232222 1379999999999753222 222333333344446999999999
Q ss_pred CCHHHHHHHHH
Q 020714 301 AGLKALTQYLM 311 (322)
Q Consensus 301 ~gi~el~~~i~ 311 (322)
.|+++++++|.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999999874
No 131
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=4.8e-20 Score=150.96 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=106.4
Q ss_pred EEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccc
Q 020714 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF 223 (322)
Q Consensus 144 v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~a 223 (322)
++|.+|||||||+|++.+.. ..++..+++|.......+...+..+.+|||||+..+....... ......+.. ..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~---~~~~~~~~~-~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE---KVARDFLLG-EKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH---HHHHHHhcC-CCC
Confidence 57999999999999999876 4455667778776665566667789999999997654321111 111222222 588
Q ss_pred cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714 224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (322)
Q Consensus 224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi 303 (322)
|++++|+|+.+.. ... .+...+... ++|+++|+||+|+......... ...+....+. +++++||++|.|+
T Consensus 76 d~vi~v~d~~~~~--~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~-~~~~iSa~~~~~~ 145 (158)
T cd01879 76 DLIVNVVDATNLE--RNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGIKID-LDKLSELLGV-PVVPTSARKGEGI 145 (158)
T ss_pred cEEEEEeeCCcch--hHH---HHHHHHHHc---CCCEEEEEehhhhcccccchhh-HHHHHHhhCC-CeEEEEccCCCCH
Confidence 9999999996532 111 222233222 4689999999999765322222 2344444444 6999999999999
Q ss_pred HHHHHHHHHHhh
Q 020714 304 KALTQYLMEQFK 315 (322)
Q Consensus 304 ~el~~~i~~~l~ 315 (322)
++++++|.+.+.
T Consensus 146 ~~l~~~l~~~~~ 157 (158)
T cd01879 146 DELKDAIAELAE 157 (158)
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 132
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.84 E-value=3.1e-20 Score=155.05 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++++++|.+|+|||||++++.+..+.. ....++.+.....+...+ ..+.+|||||...+.... -
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT--EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR------------P 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccc------------c
Confidence 479999999999999999998765432 222232222222222333 467899999986543211 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHHHHhc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAEQFKH 285 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~~~~~ 285 (322)
..+..+|++++|||++++.+.... ...|+..+... .++.|+++|+||+|+.... ....+....++.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 144 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNI-SEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE 144 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence 246788999999999765444321 12355544432 2467899999999996432 122233455555
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 286 LPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
..+..++++|||++|.|++++|+.++-
T Consensus 145 ~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 145 KIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 556657999999999999999988764
No 133
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.84 E-value=3.6e-20 Score=154.18 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=107.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|++|||||||++++.+..+.... .+....+.....+...+ ..+.+|||||...+.. .+ .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~--~ 69 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK---------SM--V 69 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---------hh--H
Confidence 478999999999999999999876643211 11111111112222333 5788999999763211 01 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|||++++.+. ..+..|+..+... ...+.|+++|+||+|+.............++..... +++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~ 146 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASF--HSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFET 146 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHH--HhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEE
Confidence 1235788999999999764433 3345566555432 234689999999999976554444445555555544 69999
Q ss_pred ecCC---CCCHHHHHHHHHHHh
Q 020714 296 SGLK---GAGLKALTQYLMEQF 314 (322)
Q Consensus 296 Sa~~---g~gi~el~~~i~~~l 314 (322)
||++ +.|++++|..+.+.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 999999999998765
No 134
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=7.6e-20 Score=154.09 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=103.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+..++|+++|++|||||||++++..+.+....++.+.. ...+...+..+.+|||||...+. ...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~----~~~~~~~~~~~~l~D~~G~~~~~------------~~~ 78 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFN----VETVEYKNLKFTMWDVGGQDKLR------------PLW 78 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccc----eEEEEECCEEEEEEECCCCHhHH------------HHH
Confidence 34689999999999999999999766554332222221 12234467789999999985321 112
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC--CC-CCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PG-YERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~ 292 (322)
...+..+|++|+|+|+++..+. .....++..+ ......+.|+++|+||+|+..... ..+....+... .. ...+
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERI--GDAREELERMLSEDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYI 155 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEE
Confidence 2346889999999999764322 2233334333 222234578999999999865321 12222222211 00 1136
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+++||++|.|++++++||.+.+.+
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999987754
No 135
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.84 E-value=3.1e-20 Score=160.69 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
++|+++|.+|||||||++++.+..+... .++.+.. ....+..+ ...+.||||+|...+.. +.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~---~~~~~~~~~~~v~L~iwDt~G~e~~~~----------l~-- 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN---YTASFEIDKRRIELNMWDTSGSSYYDN----------VR-- 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc---eEEEEEECCEEEEEEEEeCCCcHHHHH----------Hh--
Confidence 6899999999999999999998765432 1222211 11112233 35678999999864321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHHHh
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (322)
-..+..+|++|+|||++++.+.... ...|...+.. ..++.|+++|+||+|+..... +..+....++
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i-~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSV-LKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 1247899999999999775433221 1234444332 235689999999999965311 2234566677
Q ss_pred cCCCCCcEEEeecCCCCC-HHHHHHHHHHHhhh
Q 020714 285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQFKD 316 (322)
Q Consensus 285 ~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~~ 316 (322)
+..+..++++|||+++.| |+++|+.+..+...
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 777765799999999985 99999999987655
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=6.8e-20 Score=153.20 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=101.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
..++|+++|.+|||||||++++..+.+....+..+.+. ......+..+.+|||||...+. ....
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~l~D~~G~~~~~------------~~~~ 77 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQESLR------------SSWN 77 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEECCeEEEEEECCCCHHHH------------HHHH
Confidence 35789999999999999999998776554433333322 2233457789999999985321 1111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCcE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYERI 292 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~ 292 (322)
..+..+|++++|+|++++.+. .....++..+ ......+.|+++|+||+|+.... ..++....+. ..... ++
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~--~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~~~-~~ 153 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERL--PLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-TPAEISESLGLTSIRDHTW-HI 153 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-CHHHHHHHhCcccccCCce-EE
Confidence 346789999999999764322 2223333333 22223468899999999986532 1222223332 11222 58
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 020714 293 FMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~ 312 (322)
++|||++|.||++++++|.+
T Consensus 154 ~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 154 QGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EecccCCCCCHHHHHHHHhc
Confidence 99999999999999999964
No 137
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=6.7e-20 Score=151.97 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEE-EEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL-GVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+||+++|.+|||||||+|++.+..+... .+.+...... .........+.+|||||...+.. ....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~ 66 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRA------------NLAA 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchhhhH------------HHhh
Confidence 3799999999999999999998776432 2222111111 11222456788999999764311 1223
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH--HHHHHHHHhc-CCCCCcEEEe
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQFKH-LPGYERIFMT 295 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~~~~~~-~~~~~~~~~i 295 (322)
.+..+|++++|+|++++.+.... ...|+..+.... ++.|+++|+||+|+.+.... .++....+.. .....++++|
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERI-RTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC 144 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence 45789999999999764333221 123444443322 36789999999999765431 2222222222 1222369999
Q ss_pred ecCCCCCHHHHHHHHHHHhh
Q 020714 296 SGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~ 315 (322)
||++|.|++++|+.+.+.+.
T Consensus 145 Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred ccccccCHHHHHHHHHHHhc
Confidence 99999999999999988764
No 138
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=7.9e-20 Score=154.24 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=102.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.+|||||||+|++.+..+..+.+..+. ........+..+.+|||||...+ .. ..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~G~~~~---------~~---~~ 78 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHP----TSEELAIGNIKFTTFDLGGHQQA---------RR---LW 78 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCcccc----ceEEEEECCEEEEEEECCCCHHH---------HH---HH
Confidence 3468999999999999999999998765433222222 22334456788999999998532 11 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---------
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--------- 286 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--------- 286 (322)
...+..+|++++|+|+++..+. .....++..+. .....+.|+++|+||+|+.... ..++....+.-.
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~l~l~~~~~~~~~~ 155 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPYAA-SEDELRYALGLTNTTGSKGKV 155 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-CHHHHHHHcCCCccccccccc
Confidence 2346789999999999653222 22233333332 2223467899999999986431 122222232110
Q ss_pred -CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 287 -PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 287 -~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
.....+++|||++|.|++++++||...
T Consensus 156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCceeEEEEeecccCCChHHHHHHHHhh
Confidence 123358999999999999999999865
No 139
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=2e-19 Score=151.12 Aligned_cols=159 Identities=19% Similarity=0.279 Sum_probs=103.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~ 214 (322)
.+.++|+++|.+|+|||||+|+|++.. ...++..+++|........ +..+.+|||||+........ .........
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---CCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 467899999999999999999999875 5666777777766543322 24799999999864322111 111111222
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCCCCc
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYER 291 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 291 (322)
..+.....++++++|+|++.+.+..+..+..++.. . +.|+++|+||+|+..... ...+....+.......+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~---~---~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE---R---GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 33333345789999999987666555444444432 2 467999999999975421 22333333333222236
Q ss_pred EEEeecCCCCCHH
Q 020714 292 IFMTSGLKGAGLK 304 (322)
Q Consensus 292 ~~~iSa~~g~gi~ 304 (322)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999984
No 140
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=4.3e-19 Score=150.91 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=112.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|++.. ...++..+++|....... .+..+.||||||+........ ........
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE---VNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe---cCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 3457889999999999999999999875 566677777776644322 246899999999764322111 11111222
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH--HHHHHHHHhcCCCCCc
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQFKHLPGYER 291 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 291 (322)
...+......+++++++|.+.+.+..+..+..++... +.|+++++||+|+...... ............ ..+
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~ 170 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDE 170 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCc
Confidence 3333344556789999998765554443444444322 4569999999999764321 111122222222 246
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++++||++|.|+++++++|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999988764
No 141
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.84 E-value=1.2e-19 Score=152.96 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEE-eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.++|+++|.+|||||||++++....+....+..+.+........ ...+..+.+|||||...+. . ...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~------~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR------P------LWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH------H------HHH
Confidence 57899999999999999999987765432222222222211111 1134678999999975321 0 111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CC--CCCc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LP--GYER 291 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~--~~~~ 291 (322)
..+..+|++++|+|+++..+. .....++..+... ...+.|+++|+||+|+..... .+. ...+.. .. ...+
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~--~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 146 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERM--EEAKTELHKITRFSENQGVPVLVLANKQDLPNALS-VSE-VEKLLALHELSASTPWH 146 (183)
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC-HHH-HHHHhCccccCCCCceE
Confidence 236789999999999653221 2233344433321 223578999999999864311 111 122221 11 1124
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++++||++|+|+++++++|.+.+.+
T Consensus 147 ~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 147 VQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEEeecccCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999988854
No 142
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=1e-19 Score=151.85 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.+|+++|++|||||||++++.+..+.... ..+........+... ...+.+|||||...+.... .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR------------P 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccccceEEEEEECCEEEEEEEEeCCCchhhhhcc------------c
Confidence 57999999999999999999987654221 111111111122223 3467899999986432211 0
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHHHHh
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAEQFK 284 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~~~~ 284 (322)
..+..+|++++|+|+++..+. ..+ ..|+..+... .++.|+++|+||+|+...... .......++
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSL--ENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred cccCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 235788999999999764322 222 2344444432 246889999999998653211 112233444
Q ss_pred cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 285 ~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
...+..++++|||++|.|++++|++|.+++
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 434444799999999999999999998764
No 143
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=1.1e-19 Score=149.49 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|||||||++++.+..+....+..+.+.. .........+.+|||||...+. ......+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~l~i~D~~G~~~~~------------~~~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE---MLQLEKHLSLTVWDVGGQEKMR------------TVWKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE---EEEeCCceEEEEEECCCCHhHH------------HHHHHHh
Confidence 488999999999999999998876543333332221 1111235679999999975321 1111346
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH-----hcCCCCCcEEE
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF-----KHLPGYERIFM 294 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~ 294 (322)
..+|++++|+|+++..+. .....++..+. .....+.|+++|+||+|+..... ..+....+ ....+ .++++
T Consensus 66 ~~~~~iv~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~ 141 (160)
T cd04156 66 ENTDGLVYVVDSSDEARL--DESQKELKHILKNEHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRD-WYVQP 141 (160)
T ss_pred ccCCEEEEEEECCcHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCc-EEEEe
Confidence 788999999999764322 22333444332 22224688999999999964311 12222222 11112 25899
Q ss_pred eecCCCCCHHHHHHHHHH
Q 020714 295 TSGLKGAGLKALTQYLME 312 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~ 312 (322)
|||++|+|+++++++|.+
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 999999999999999864
No 144
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=1.1e-19 Score=153.81 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=103.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+..+|+++|++|||||||++++.+.......+..+ .....+..++..+.+|||||...+. ...
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~----~~~~~i~~~~~~~~l~D~~G~~~~~------------~~~ 80 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLH----PTSEELTIGNIKFKTFDLGGHEQAR------------RLW 80 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccC----cceEEEEECCEEEEEEECCCCHHHH------------HHH
Confidence 457889999999999999999999876543222222 2223344567889999999975320 112
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc----------
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---------- 285 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---------- 285 (322)
...+..+|++++|+|+++..+. .....++..+ ......+.|+++|+||+|+.... ..++....+..
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPGAV-SEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc-CHHHHHHHhCccccccccccc
Confidence 2346788999999999754222 1223344443 32333468999999999996431 22222222211
Q ss_pred ---CC-CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 286 ---LP-GYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 286 ---~~-~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.. ...++++|||++|+|++++|+||.+.+
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 01 112589999999999999999998753
No 145
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=7.9e-20 Score=150.20 Aligned_cols=152 Identities=17% Similarity=0.174 Sum_probs=95.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH-Hhh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA-WSA 219 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~-~~~ 219 (322)
+|+++|.+|||||||++++.........+..+.+. ..+...+..+.+|||||...+ ... ...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNV----ETVTYKNLKFQVWDLGGQTSI-------------RPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCe----EEEEECCEEEEEEECCCCHHH-------------HHHHHHH
Confidence 48999999999999999997765543222222211 123345678899999998632 111 234
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHH-HhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC---CCCcEEEe
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIE-RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMT 295 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~-~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~i 295 (322)
+..+|++++|+|+++..+.. ....++. .+......+.|+++|+||+|+..... ..+....+.... ...++++|
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 140 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLG--TAKEELHAMLEEEELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFKT 140 (158)
T ss_pred hcCCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEEe
Confidence 67899999999996542211 1122222 22222234678999999999975421 222222221110 11259999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 020714 296 SGLKGAGLKALTQYLME 312 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~ 312 (322)
||++|.|+++++++|.+
T Consensus 141 Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 141 SAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eccCCCCHHHHHHHHhc
Confidence 99999999999999875
No 146
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=1.1e-19 Score=148.94 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=102.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|++|||||||++++++.... .....++.+......... ...+.+||+||...+. . ....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~------~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS------A------MRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH------H------HHHH
Confidence 5899999999999999999876532 222333333333333333 3567899999976421 1 1113
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
.+..+|++++|+|.++..+. .....+...+..... ...|+++|+||+|+........+....+....+ .+++++||
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~ 143 (160)
T cd00876 67 YIRQGDGFILVYSITDRESF--EEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSA 143 (160)
T ss_pred HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEecc
Confidence 45678999999999654322 233344433332221 468899999999998643333333444444344 36999999
Q ss_pred CCCCCHHHHHHHHHHHh
Q 020714 298 LKGAGLKALTQYLMEQF 314 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l 314 (322)
++|.|+++++++|.+.+
T Consensus 144 ~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 144 KDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 147
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=8e-20 Score=153.10 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=96.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeee--------ee------cCCCCceeeeEEEEE-----eeCCccEEEEeCCCcccCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVA--------AV------SRKTNTTTHEVLGVM-----TKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~--------~~------~~~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~ 201 (322)
+|+++|.+|||||||+++|++.... .. ....|.+........ ...+..+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999863210 01 111233433222222 2235567899999997531
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE 281 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~ 281 (322)
. .....+..+|++++|+|++++.+.........+. . .+.|+++|+||+|+..... .....
T Consensus 82 ~------------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~---~~~~iiiv~NK~Dl~~~~~--~~~~~ 141 (179)
T cd01890 82 Y------------EVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---E---NNLEIIPVINKIDLPSADP--ERVKQ 141 (179)
T ss_pred H------------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---H---cCCCEEEEEECCCCCcCCH--HHHHH
Confidence 1 1223456789999999997654433322222111 1 2467999999999865322 11122
Q ss_pred HHhcCCCC--CcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 282 QFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 282 ~~~~~~~~--~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+.+..+. .+++++||++|.|+++++++|.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 23322232 25899999999999999999988763
No 148
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=6.5e-20 Score=156.01 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=103.3
Q ss_pred ceEEEEEcCCCCchhHHHH-HHhCCeeee---ecCCCCce----eeeEEE--------EEeeCCccEEEEeCCCcccCCC
Q 020714 139 SVAVGIIGAPNAGKSSIIN-YMVGTKVAA---VSRKTNTT----THEVLG--------VMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin-~l~~~~~~~---~~~~~~~t----~~~~~~--------~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
.+||+++|.+|||||||+. ++.+..+.. ......|. ...... ........+.||||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4789999999999999996 555443211 01111111 011000 11122457889999998631
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCC----------
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVT---------- 271 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~---------- 271 (322)
+. ...+..+|++++|||++++.+... +. .|+..+... .++.|+++|+||+|+..
T Consensus 80 ----------~~--~~~~~~ad~iilv~d~t~~~Sf~~--~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 ----------DR--RFAYGRSDVVLLCFSIASPNSLRN--VKTMWYPEIRHF-CPRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred ----------hh--cccCCCCCEEEEEEECCChhHHHH--HHHHHHHHHHHh-CCCCCEEEEEEchhccccccchhhhcc
Confidence 11 125789999999999977654433 32 355555432 24678999999999964
Q ss_pred ---------ChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 272 ---------KKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 272 ---------~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
.+.+..+....+++..+. ++++|||++|.||+++|+.+.++
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 133445567777777777 69999999999999999999864
No 149
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=1.5e-19 Score=150.16 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|||||||++++.+.......+..+.+. ..+...+..+.+|||||...+. . .....+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~~~i~D~~G~~~~~---------~---~~~~~~ 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP----TKLRLDKYEVCIFDLGGGANFR---------G---IWVNYY 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE----EEEEECCEEEEEEECCCcHHHH---------H---HHHHHH
Confidence 37899999999999999998763333333334332 2234567889999999975321 1 122456
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHH--HHH--HHHHhcCCCC-CcEEE
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDL--LKV--AEQFKHLPGY-ERIFM 294 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~--~~~--~~~~~~~~~~-~~~~~ 294 (322)
..+|++++|+|+++..+ ......++..+... ...+.|+++|+||+|+....... .+. ...+....+. ..+++
T Consensus 65 ~~a~~ii~V~D~s~~~s--~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 142 (167)
T cd04161 65 AEAHGLVFVVDSSDDDR--VQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP 142 (167)
T ss_pred cCCCEEEEEEECCchhH--HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence 88999999999976432 23344556655432 23468999999999997654211 111 1222222222 25788
Q ss_pred eecCCC------CCHHHHHHHHHH
Q 020714 295 TSGLKG------AGLKALTQYLME 312 (322)
Q Consensus 295 iSa~~g------~gi~el~~~i~~ 312 (322)
|||++| .|+++.|+||..
T Consensus 143 ~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 143 CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEceeCCCCccccCHHHHHHHHhc
Confidence 999998 899999999975
No 150
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=1.7e-19 Score=153.19 Aligned_cols=159 Identities=18% Similarity=0.302 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe------eeeecCCCCceeeeEEEEEeeC--------------CccEEEEeCCCccc
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKA--------------DTQICIFDTPGLML 199 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~------~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~l~DtpG~~~ 199 (322)
++|+++|.+|+|||||+++|++.. ........++|.......+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999998631 1112223355544433322222 66889999999742
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HH
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DL 276 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~ 276 (322)
.....+.....+|++++|+|++.+..........+.... +.|+++|+||+|+..... ..
T Consensus 81 ------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~ 142 (192)
T cd01889 81 ------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL------CKKLIVVLNKIDLIPEEERERKI 142 (192)
T ss_pred ------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHH
Confidence 133444456678999999999765433332222222211 357999999999975322 12
Q ss_pred HHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 277 LKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 277 ~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.+..+.+... ....+++++||++|.|+++|+++|.+.+..
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 2222222111 122469999999999999999999988764
No 151
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.83 E-value=2.5e-19 Score=151.03 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=103.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeec---------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS 205 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 205 (322)
+|+++|.+|+|||||+|+|.+....... ...++|...........+..+.+|||||+..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 3899999999999999999876543221 12234444444444555778999999997532
Q ss_pred hhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--H-HHHHHHH
Q 020714 206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--D-LLKVAEQ 282 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~-~~~~~~~ 282 (322)
.......+..+|++++|+|++.+...........+ .. .+.|+++|+||+|+..... . .......
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~ 142 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIA---RE---GGLPIIVAINKIDRVGEEDLEEVLREIKEL 142 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHH---HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHH
Confidence 11122345678999999999765543333333332 22 2567999999999986321 1 2222222
Q ss_pred HhcC------------CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 283 FKHL------------PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 283 ~~~~------------~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+... ....+++++||++|.|+++++++|.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2221 12457999999999999999999998874
No 152
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=4.1e-19 Score=146.97 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=100.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---CCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.|+++|.+|+|||||+|+|.+..+... ..+++|.......... .+..+.+|||||...+. . ...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~------~------~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT------N------MRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH------H------HHH
Confidence 489999999999999999998765432 2234444332222333 36789999999975321 1 111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHHh-----cCCCCCc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFK-----HLPGYER 291 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~~-----~~~~~~~ 291 (322)
..+..+|++++|+|++++..........++.. .+.|+++|+||+|+..... ........+. ......+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence 23567899999999976543222222233322 2467999999999975321 1111122111 1112246
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
++++||++|.|+++++++|.+...
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EEEeecccCCCHHHHHHHHHHhhh
Confidence 999999999999999999988764
No 153
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=2.9e-19 Score=147.02 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=96.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|||||||+|+|.+.... . ..|.. ....+. .+|||||+..... ..+...+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~-----v~~~~~--~~iDtpG~~~~~~--------~~~~~~~~~~ 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQA-----VEFNDK--GDIDTPGEYFSHP--------RWYHALITTL 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceE-----EEECCC--CcccCCccccCCH--------HHHHHHHHHH
Confidence 6999999999999999999876421 1 11111 112222 2699999853221 1233334457
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..+|++++|+|++...+... .++..+. .+.|+++++||+|+... ..+.....+.......+++++||++|
T Consensus 63 ~~ad~il~v~d~~~~~s~~~----~~~~~~~----~~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g 132 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLP----AGLLDIG----VSKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDP 132 (158)
T ss_pred hcCCEEEEEEeCCCcccccC----HHHHhcc----CCCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCc
Confidence 88999999999976544322 2333332 24679999999998653 23333333333322247999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 020714 301 AGLKALTQYLMEQFKD 316 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~ 316 (322)
+|+++++++|.+.+.+
T Consensus 133 ~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 133 QSVQQLVDYLASLTKQ 148 (158)
T ss_pred cCHHHHHHHHHHhchh
Confidence 9999999999998865
No 154
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.82 E-value=1e-19 Score=155.26 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=103.0
Q ss_pred EcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccc
Q 020714 145 IGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF 223 (322)
Q Consensus 145 ~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~a 223 (322)
+|.+|||||||+++++...+.. ..+..|.+..............+.||||+|...+.. + ....+..+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----------l--~~~~~~~a 68 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----------L--RDGYYIQG 68 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----------h--hHHHhcCC
Confidence 5999999999999998765432 222223222222211222346789999999875422 1 11357889
Q ss_pred cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714 224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (322)
Q Consensus 224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi 303 (322)
|++++|||+++..+. ..+..|+..+... .++.|+++|+||+|+...... .+.. .++...++ ++++|||++|.||
T Consensus 69 d~~ilV~D~t~~~S~--~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~-~~~~-~~~~~~~~-~~~e~SAk~~~~v 142 (200)
T smart00176 69 QCAIIMFDVTARVTY--KNVPNWHRDLVRV-CENIPIVLCGNKVDVKDRKVK-AKSI-TFHRKKNL-QYYDISAKSNYNF 142 (200)
T ss_pred CEEEEEEECCChHHH--HHHHHHHHHHHHh-CCCCCEEEEEECcccccccCC-HHHH-HHHHHcCC-EEEEEeCCCCCCH
Confidence 999999999775433 2345566666543 246899999999998643222 2222 33444454 5999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 020714 304 KALTQYLMEQFKDL 317 (322)
Q Consensus 304 ~el~~~i~~~l~~~ 317 (322)
+++|++|.+.+...
T Consensus 143 ~~~F~~l~~~i~~~ 156 (200)
T smart00176 143 EKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888653
No 155
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.82 E-value=2.8e-19 Score=150.05 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.+|+++|.+|||||||++++.+..+.. ...+++........... +..+.+|||||...+.. + ..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~--~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI----------L--PQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH----------H--HH
Confidence 479999999999999999999766432 11222222112222233 34578999999864311 1 11
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..++++++++|+++..+. ..+..+...+.. ....+.|+++|+||+|+...+.........+....+. +++++|
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 144 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSF--EVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESS 144 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEe
Confidence 235567999999999764322 223333333322 1223578999999999975432222223333343343 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 020714 297 GLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~~ 317 (322)
|++|.|+.+++++|.+.+...
T Consensus 145 a~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 145 ARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 156
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.82 E-value=8.6e-20 Score=150.32 Aligned_cols=158 Identities=19% Similarity=0.265 Sum_probs=111.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
||+++|.+|||||||++++.+..+.... +..+. +.....+... ...+.+||++|...+ .. .. .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~----~~--~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSIDGKPVNLEIWDTSGQERF------DS----LR--D 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEETTEEEEEEEEEETTSGGG------HH----HH--H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccccccccccccccccccccc------cc----cc--c
Confidence 6899999999999999999887644221 12222 2222223333 446899999997643 11 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|+++++||.++..+. ..+..|+..+......+.|+++|+||.|+...+....+....++..++ .+++++||
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~--~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 143 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESF--ENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA 143 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHH--HTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred ccccccccccccccccccccc--cccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence 346788999999999664322 345577777665544568999999999998744444445566666666 47999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 020714 298 LKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~ 315 (322)
++|.||.++|..+++.+.
T Consensus 144 ~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 144 KNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 157
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=2.5e-19 Score=151.53 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.+++++|++|+|||||++++....+.... .+ +............+ ..+.+|||+|...+....+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------------ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY-HP-TVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP------------ 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-CC-cccceEEEEEEECCEEEEEEEEECCCChhccccch------------
Confidence 47999999999999999999865543211 11 11111111222232 4578999999865432110
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCCh----------hHHHHHHHHHhcC
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHL 286 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----------~~~~~~~~~~~~~ 286 (322)
..+..+|++++++|+++..+. ..+. .|+..+... .++.|+++|+||+|+.... ....+....++..
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~--~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSL--ENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 135778999999999654322 2232 355555432 2468999999999985421 1112334455555
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.+..++++|||++|.|++++|+++.+.+...
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 6655799999999999999999999877653
No 158
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=2.8e-19 Score=148.97 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=100.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|++|||||||++++.+.......+..|.+. ..+...+..+.+|||||...+ .. ..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~---------~~---~~ 75 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAI---------RP---YW 75 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHH---------HH---HH
Confidence 447899999999999999999999876544333333322 123345778999999997521 11 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc--C-CCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~ 292 (322)
...+..+|++++|+|++...+. .....++..+ ......+.|+++++||+|+..... ..+....+.- . ....++
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRL--EEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHI 152 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEE
Confidence 1235788999999999653211 1222333322 222223578999999999875422 2222222211 1 111247
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 020714 293 FMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~ 312 (322)
+++||++|+|++++++||.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 159
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.82 E-value=4.1e-19 Score=145.73 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=100.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
||+++|.+|||||||++++.+..........+.+.. .+...+..+.+|||||...+.. . ....+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~---------~---~~~~~ 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQDKIRP---------L---WKHYY 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEEECCEEEEEEECCCChhhHH---------H---HHHHh
Confidence 589999999999999999998874433333333322 2334567899999999864311 1 11345
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CCCCCcEEEee
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIFMTS 296 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~iS 296 (322)
..+|++++|+|++.+.+.. ....++..+. .....+.|+++|+||+|+.... ...+....+.. .....+++++|
T Consensus 65 ~~~~~~i~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd00878 65 ENTNGIIFVVDSSDRERIE--EAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCS 141 (158)
T ss_pred ccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEee
Confidence 7789999999997543222 2333333332 2223568999999999997643 12222222221 11233699999
Q ss_pred cCCCCCHHHHHHHHHH
Q 020714 297 GLKGAGLKALTQYLME 312 (322)
Q Consensus 297 a~~g~gi~el~~~i~~ 312 (322)
|++|.|+++++++|..
T Consensus 142 a~~~~gv~~~~~~l~~ 157 (158)
T cd00878 142 AVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 160
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=3.6e-19 Score=152.01 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=100.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|.+|||||||++++++..+... ...++.......+...+ ..+.+|||||...+.. + . ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~----~--~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK--YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA------M----R--KL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc--CCCchhhheeEEEEECCEEEEEEEEECCCchhhhH------H----H--HH
Confidence 589999999999999999988765421 11222122222233334 5678999999764311 1 1 12
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCC-hhHHH-HHHHHHhcCCCCCcEEEe
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTK-KKDLL-KVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~i 295 (322)
.+..+|++++|||+++..+.. ....+...+... ...+.|+++|+||+|+... ..... .........++ .+++++
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~~ 143 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFE--EVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN-CGFVET 143 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC-CcEEEe
Confidence 467889999999997643322 233444433322 1235889999999999653 21111 11122211222 368999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|+++++++|.+.+..
T Consensus 144 Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 144 SAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999987753
No 161
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.7e-19 Score=140.10 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=125.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
-.+|+.++|.+.||||||+.+..+..+.. .-...|...............++++|||.|++.+. .+ +
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryr------ti------T 87 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR------TI------T 87 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhh------HH------H
Confidence 35699999999999999999998765432 11222222222222222234678999999998532 11 2
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
-..++.++++|+++|+.+. +....+..|.-.++.....+.|+|+|+||||+...+....+....+.+..|+ .+|++|
T Consensus 88 TayyRgamgfiLmyDitNe--eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtS 164 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNE--ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETS 164 (193)
T ss_pred HHHhhccceEEEEEecCCH--HHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhc
Confidence 2457899999999999763 2334688899998888788899999999999998877777778888888898 599999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 020714 297 GLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~~ 317 (322)
||.+.|++++|+.+...+.+.
T Consensus 165 aK~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 165 AKENINVKQVFERLVDIICDK 185 (193)
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 162
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2e-18 Score=143.07 Aligned_cols=170 Identities=23% Similarity=0.313 Sum_probs=120.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 215 (322)
...-|+++|-+|||||||||+|++.+ .+.++.+||.|....... . +..+.++|.||+........ .+.....+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~-~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--V-DDELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--e-cCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45679999999999999999999954 789999999998766432 2 33489999999974432111 1111222333
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCC-c
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYE-R 291 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~-~ 291 (322)
.+..=..-.++++++|+.+.....+..+.+|+...+ .|+++|+||+|.....+.. ......+....... .
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~------i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELG------IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence 333324457899999998888887888888888766 4599999999998864322 22232332222221 2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++..|+.++.|++++...|.+.+..
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999999988764
No 163
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=150.96 Aligned_cols=173 Identities=24% Similarity=0.316 Sum_probs=126.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.+..+.++|.|+||||||||++.+++.+ +.+.+.|.||+....+.+..++.+++++||||+.+.....- ..+......
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er-N~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER-NEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh-cHHHHHHHH
Confidence 4577899999999999999999999876 56788999999999999999999999999999985322111 112222222
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
++. .-.++|+++||.+..+.-.-+....++++++..- ..|+++|+||+|+... +..++....+... +......+
T Consensus 243 AL~--hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~-~~~~~~~~ 316 (346)
T COG1084 243 ALR--HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE-EKLEEIEASVLEE-GGEEPLKI 316 (346)
T ss_pred HHH--HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch-hHHHHHHHHHHhh-ccccccce
Confidence 222 3358999999998877766666666777766442 2689999999999864 3333333333333 33346889
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
|+..+.+++.+.+.+.....+
T Consensus 317 ~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 317 SATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeeehhhHHHHHHHHHHHhhc
Confidence 999999999999888877544
No 164
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=1.4e-18 Score=141.17 Aligned_cols=157 Identities=24% Similarity=0.297 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
++|+++|.+|+|||||+|++.+.. ......++++.......+..++ ..+.+|||||...+.. .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~----- 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-----IRRLY----- 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-----HHHHH-----
Confidence 689999999999999999999887 4445556666665554455556 6788999999654321 11111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
...++.++.++|..............+...+......+.|+++|+||+|+.... ........+..... .+++++||
T Consensus 71 --~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~-~~~~~~sa 146 (161)
T TIGR00231 71 --YRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNG-EPIIPLSA 146 (161)
T ss_pred --HhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccC-CceEEeec
Confidence 233455555555543311111111122222221111157899999999997643 23333334444333 46999999
Q ss_pred CCCCCHHHHHHHHH
Q 020714 298 LKGAGLKALTQYLM 311 (322)
Q Consensus 298 ~~g~gi~el~~~i~ 311 (322)
++|.|+.+++++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999875
No 165
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=1.5e-18 Score=141.09 Aligned_cols=160 Identities=26% Similarity=0.334 Sum_probs=109.8
Q ss_pred EEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhccc
Q 020714 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (322)
Q Consensus 144 v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (322)
++|++|+|||||+|++.+..........++|........... +..+.+|||||+..+...... ........+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-----~~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-----REELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-----HHHHHHHHHHh
Confidence 579999999999999998876656666777766655544433 678999999999765431110 01233345677
Q ss_pred ccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH--HHHHhcCCCCCcEEEeecCCC
Q 020714 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV--AEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 223 ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~iSa~~g 300 (322)
+|++++|+|++......... +...... .+.|+++|+||+|+.......... ...........+++++||++|
T Consensus 76 ~d~il~v~~~~~~~~~~~~~---~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 76 ADLILFVVDADLRADEEEEK---LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTG 149 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHH---HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeecc
Confidence 89999999997754443322 2333222 256799999999998754332221 122233344557999999999
Q ss_pred CCHHHHHHHHHHHh
Q 020714 301 AGLKALTQYLMEQF 314 (322)
Q Consensus 301 ~gi~el~~~i~~~l 314 (322)
.|+++++++|.+.+
T Consensus 150 ~~v~~l~~~l~~~~ 163 (163)
T cd00880 150 EGIDELREALIEAL 163 (163)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 166
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-19 Score=140.85 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=122.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
-++|+++|..|||||+|+.+++.+-++. .+...|+........+.....++++|||+|++.|.. + +.
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs------i------tq 74 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS------I------TQ 74 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH------H------HH
Confidence 5899999999999999999998765542 233344444444433444456789999999986532 1 12
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
.+++-|+.+|+|+|++-..+. .-+.+|+.++.......+-.|+|+||+|+.+.+++..+..+.|.+.... -++++||
T Consensus 75 syyrsahalilvydiscqpsf--dclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdm-yfletsa 151 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSF--DCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDM-YFLETSA 151 (213)
T ss_pred HHhhhcceEEEEEecccCcch--hhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhh-hhhhhcc
Confidence 346778999999999765444 3477888888776655666899999999999888888989998877544 4899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
+..+|++.||..+.-.+..
T Consensus 152 kea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRLIS 170 (213)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 9999999999888766543
No 167
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=5.7e-19 Score=146.20 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=99.6
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
|+++|.+|||||||++++.+..+.. ..+..+.. ...+...+..+.+|||||...+.. .....+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~----~~~i~~~~~~l~i~Dt~G~~~~~~------------~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN----SVAIPTQDAIMELLEIGGSQNLRK------------YWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc----eEEEeeCCeEEEEEECCCCcchhH------------HHHHHH
Confidence 7899999999999999999775432 11222221 122345567899999999864321 111346
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH----HHHHHHhcCCCCCcEEEee
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL----KVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~iS 296 (322)
..+|++++|+|.+++.+. .....++..+.... ++.|+++|+||+|+........ .....+....+. +++++|
T Consensus 66 ~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~S 141 (164)
T cd04162 66 SGSQGLIFVVDSADSERL--PLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTS 141 (164)
T ss_pred hhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEee
Confidence 788999999999764322 23445555554322 5789999999999976542211 112334333444 578898
Q ss_pred cCC------CCCHHHHHHHHHH
Q 020714 297 GLK------GAGLKALTQYLME 312 (322)
Q Consensus 297 a~~------g~gi~el~~~i~~ 312 (322)
|++ ++|++++|+.++.
T Consensus 142 a~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 142 LDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ecCCCChhHHHHHHHHHHHHhc
Confidence 888 9999999998864
No 168
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.5e-18 Score=173.78 Aligned_cols=166 Identities=18% Similarity=0.287 Sum_probs=119.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.++|+++|.||||||||+|+|++.+. .+++.+|+|.+...+.+...+..+.++||||+..+..........+.+.+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 46899999999999999999998764 67888999998888877777889999999999765432221122222333333
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
....+|++++|+|+++. +... .+...+... +.|+++|+||+|+...... ....+.+.+..+. +++++||+
T Consensus 82 ~~~~aD~vI~VvDat~l--er~l---~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~-pVvpiSA~ 151 (772)
T PRK09554 82 LSGDADLLINVVDASNL--ERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGC-PVIPLVST 151 (772)
T ss_pred hccCCCEEEEEecCCcc--hhhH---HHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCC-CEEEEEee
Confidence 34678999999999653 2122 222333222 4679999999998754332 2234455555666 69999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 020714 299 KGAGLKALTQYLMEQFK 315 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~ 315 (322)
+|+|++++.+.+.+...
T Consensus 152 ~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 152 RGRGIEALKLAIDRHQA 168 (772)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999988753
No 169
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=6.4e-19 Score=149.20 Aligned_cols=160 Identities=19% Similarity=0.343 Sum_probs=107.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeee-----------------eecCCCCceeeeEEEEEe--eCCccEEEEeCCCcc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA-----------------AVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLM 198 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~-----------------~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~ 198 (322)
+..+|+++|..++|||||+++|+..... ......+.|.......+. ..+..+.++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4578999999999999999999853211 011123455555555555 678899999999985
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHH
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDL 276 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~ 276 (322)
.+ .......+..+|++|+|+|+..+...+.......+... +.|+++|+||+|+...+ ...
T Consensus 82 ~f------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~~~~~~~ 143 (188)
T PF00009_consen 82 DF------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL------GIPIIVVLNKMDLIEKELEEII 143 (188)
T ss_dssp HH------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT------T-SEEEEEETCTSSHHHHHHHH
T ss_pred ce------------eecccceecccccceeeeeccccccccccccccccccc------ccceEEeeeeccchhhhHHHHH
Confidence 32 33444557788999999999876544444444444433 35699999999998321 122
Q ss_pred HHHHHHHhcCC---C--CCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 277 LKVAEQFKHLP---G--YERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 277 ~~~~~~~~~~~---~--~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
++....+.+.. + ..+++++||++|.|+++|++.|.+.++
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22222332111 1 347999999999999999999998875
No 170
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=2.3e-18 Score=150.46 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=111.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|+||+|||||+|+|++... .++..+++|.....+.+...+..+.+|||||+....... .......+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~-----~~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG-----KGRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccc-----hhHHHHHHHhh
Confidence 589999999999999999998763 356667788777777676778899999999986543211 11223345668
Q ss_pred ccccEEEEEEeCCCCCCC-------------------------------------------cHHHHHHHHHHhcccC---
Q 020714 221 NLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQA--- 254 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~-------------------------------------------~~~~~~~~l~~~~~~~--- 254 (322)
+.+|++++|+|+++.... ....+...+++++...
T Consensus 76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 899999999998653210 0122333444443221
Q ss_pred ------------------CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 255 ------------------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 255 ------------------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
..-.|+++|+||+|+....+ .. .+... .+++++||++|.|++++++.|.+.+-
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~----~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LD----LLARQ---PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HH----HHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 11268999999999975422 21 23332 35899999999999999999998763
No 171
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=140.31 Aligned_cols=163 Identities=19% Similarity=0.191 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++.+|+|.||||||+|+-++....+.... ...|.........+......++||||+|.+.|.. + +-.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt------i------tst 76 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT------I------TST 76 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH------H------HHH
Confidence 45679999999999999998876443211 1111111111111223345789999999875421 1 113
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.++..+++++|+|++++.++ ..+..||+++..+. +.+|-++|+||.|....+.+..+....++...+. ++|++||+
T Consensus 77 yyrgthgv~vVYDVTn~ESF--~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaK 152 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESF--NNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAK 152 (198)
T ss_pred HccCCceEEEEEECcchhhh--HhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhh
Confidence 56888999999999875544 45889999988654 4789999999999998877777778888887777 59999999
Q ss_pred CCCCHHHHHHHHHHHhhhcC
Q 020714 299 KGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~~~ 318 (322)
...|++..|.-|.+.+...+
T Consensus 153 e~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hcccchHHHHHHHHHHHHHH
Confidence 99999999999988876643
No 172
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=2.8e-19 Score=141.27 Aligned_cols=164 Identities=19% Similarity=0.232 Sum_probs=122.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++.+++|.+-||||+|+..++.++++..+. +-|+........+.. ...++++|||+|++.+.. +
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrs------i------ 74 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS------I------ 74 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH------H------
Confidence 35789999999999999999999988876552 223222211111211 235679999999986532 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCc-EEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQK-RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p-~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
+..+++++-++++|+|++++.+. +.+..|+++.... ..|.++ +++|+.|+||...+++..++.+.++...+.. ++
T Consensus 75 tksyyrnsvgvllvyditnr~sf--ehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FV 151 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESF--EHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FV 151 (213)
T ss_pred HHHHhhcccceEEEEeccchhhH--HHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EE
Confidence 12456788899999999887655 4466777765533 235544 5799999999998888888999999999985 99
Q ss_pred EeecCCCCCHHHHHHHHHHHhhh
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++||++|.|+++.|+.|.+.+..
T Consensus 152 ETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 152 ETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred EecccCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999888765
No 173
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-18 Score=136.30 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=121.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
-+|++++|+.|.|||+|+-++...++.. ++...|+.........-....++++|||+|++.|.. + +.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS----------V--tR 76 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS----------V--TR 76 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH----------H--HH
Confidence 5789999999999999999998766543 222233332222111112235789999999976421 1 12
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
.+++.|.+.++|+|++++. ....+..|+........+++-+++++||.||...+++...+...|++.+.. -+.++||
T Consensus 77 sYYRGAAGAlLVYD~Tsrd--sfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa 153 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRD--SFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSA 153 (214)
T ss_pred HHhccccceEEEEeccchh--hHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeecc
Confidence 4578999999999997643 335678899888887778888999999999998888888888888887766 4899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|+|++|.|-...+.+..
T Consensus 154 ~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTILN 172 (214)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999776665543
No 174
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=4.1e-18 Score=142.56 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=108.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+..+|+++|.+|+||||++++|.......+.++.|.. ...+...+..+.+||.+|...... .
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~----~~~i~~~~~~~~~~d~gG~~~~~~-------------~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN----IEEIKYKGYSLTIWDLGGQESFRP-------------L 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE----EEEEEETTEEEEEEEESSSGGGGG-------------G
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc----cceeeeCcEEEEEEeccccccccc-------------c
Confidence 67899999999999999999999987665544433332 233446788999999999864322 2
Q ss_pred H-hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH--hcCC--CCC
Q 020714 217 W-SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLP--GYE 290 (322)
Q Consensus 217 ~-~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~~--~~~ 290 (322)
| ..+..+|++|+|+|.++.. ........+..+ ......+.|+++++||+|+..... ..+....+ .... ...
T Consensus 75 w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~ 151 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPW 151 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCE
T ss_pred ceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCce
Confidence 2 3467889999999997643 222333444443 333345789999999999876432 22222222 2221 222
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.++.|||.+|+|+.+.++||.+.+
T Consensus 152 ~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 152 SVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHhcC
Confidence 589999999999999999998864
No 175
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=1.6e-18 Score=149.04 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=97.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeee------------------------------cCCCCceeeeEEEEEeeCCccEE
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKADTQIC 190 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 190 (322)
+|+++|.+|+|||||+++|+...-... ....|+|.+.....+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999875321111 11256777777666767788999
Q ss_pred EEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
|+||||+..+ .......+..+|++++|+|++.+..........++...+ ..++|+|+||+|+.
T Consensus 81 liDTpG~~~~------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQY------------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLG-----IRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHH------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcC-----CCcEEEEEEchhcc
Confidence 9999997532 122334567889999999998765444333334443332 13478899999997
Q ss_pred CChh-HH---HHHHHHHhcCCCC--CcEEEeecCCCCCHHHH
Q 020714 271 TKKK-DL---LKVAEQFKHLPGY--ERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 271 ~~~~-~~---~~~~~~~~~~~~~--~~~~~iSa~~g~gi~el 306 (322)
.... .. ......+....+. .+++++||++|.|+++.
T Consensus 144 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 144 DYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 5322 11 1222333333332 35899999999999764
No 176
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=5.7e-18 Score=138.08 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=95.8
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
|+++|++|||||||+|+|.+..+... ..+....... ....++..+.+|||||...+. . .....+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~---------~---~~~~~~~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-TIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFR---------S---MWERYCR 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-ccCCCCcceE--EEEECCEEEEEEECCCCHhHH---------H---HHHHHHh
Confidence 78999999999999999998765321 1222211111 233456778999999975321 1 1123457
Q ss_pred cccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cC-CCCCcEEEeec
Q 020714 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PGYERIFMTSG 297 (322)
Q Consensus 222 ~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~~~iSa 297 (322)
.+|++++|+|++...+. .....++..+. .....+.|+++|+||+|+..... .......+. .. ....+++++|+
T Consensus 67 ~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04159 67 GVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred cCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEEEe
Confidence 78999999999653211 12223333332 22234678999999999876432 222222221 11 11236899999
Q ss_pred CCCCCHHHHHHHHHH
Q 020714 298 LKGAGLKALTQYLME 312 (322)
Q Consensus 298 ~~g~gi~el~~~i~~ 312 (322)
++|.|+++++++|.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999975
No 177
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=2.4e-17 Score=135.73 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=105.8
Q ss_pred EEEEcCCCCchhHHHHHHhC-CeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC-ChhhHHHHHHHHHhh
Q 020714 142 VGIIGAPNAGKSSIINYMVG-TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY-SHKDVKVRVESAWSA 219 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~ 219 (322)
|+++|.+|+|||||+|.+.+ ......+...+.|...... .....+.++||||+....... ............+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF---NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE---EccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 78999999999999999994 3444556666666544332 223388999999986432211 111122223333333
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCCcEEEee
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~iS 296 (322)
....+++++++|...........+..++...+ .|+++|+||+|+....... ......+.......+++++|
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELG------IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC------CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45668899999997654444445556665543 5699999999996543211 12222222133445799999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 020714 297 GLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l 314 (322)
|+++.|+.+++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998763
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=4.7e-18 Score=166.49 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=109.5
Q ss_pred cCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccE
Q 020714 146 GAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV 225 (322)
Q Consensus 146 G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 225 (322)
|.||||||||+|++++... .+++.+|+|.+.....+...+..+.+|||||+..+..... .+.+.+.+.....+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~----~e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL----EEEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch----HHHHHHHHHhhcCCCE
Confidence 8999999999999998764 6778899998887777767778899999999976543221 1222333333457899
Q ss_pred EEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714 226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (322)
Q Consensus 226 ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e 305 (322)
+++|+|+++. + . ...+..++... +.|+++|+||+|+....... ...+.+.+..+. +++++||++|+|+++
T Consensus 76 vI~VvDat~l--e--r-~l~l~~ql~~~---~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~-pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 76 VVNVVDASNL--E--R-NLYLTLQLLEL---GIPMILALNLVDEAEKKGIR-IDEEKLEERLGV-PVVPTSATEGRGIER 145 (591)
T ss_pred EEEEecCCcc--h--h-hHHHHHHHHhc---CCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCC-CEEEEECCCCCCHHH
Confidence 9999999652 1 1 12222222222 57899999999986543222 223455555565 699999999999999
Q ss_pred HHHHHHHHh
Q 020714 306 LTQYLMEQF 314 (322)
Q Consensus 306 l~~~i~~~l 314 (322)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998764
No 179
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.77 E-value=4.6e-18 Score=141.33 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=95.7
Q ss_pred ceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeeccccchhhhhHHHH
Q 020714 47 DSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEE 105 (322)
Q Consensus 47 d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~~~~~~~~~~~~~~ 105 (322)
|+++++.|||.|... + ||+|+++++....|..+|.+....+.|.+..+.....+.....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 678888888887655 2 8999999999999999999998888887764433222211000
Q ss_pred --------HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeee
Q 020714 106 --------EERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE 177 (322)
Q Consensus 106 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~ 177 (322)
............+...++.. ..+......++++++|.||||||||+|+|++...+.++..+|+|+..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~ 155 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNY-----SRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM 155 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHH-----hhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce
Confidence 00000000000111111000 01122345689999999999999999999999988999999999987
Q ss_pred EEEEEeeCCccEEEEeCCCc
Q 020714 178 VLGVMTKADTQICIFDTPGL 197 (322)
Q Consensus 178 ~~~~~~~~~~~~~l~DtpG~ 197 (322)
+.... +..+.++||||+
T Consensus 156 ~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 156 QEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred EEEEe---CCCEEEEECcCC
Confidence 65432 357899999996
No 180
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.77 E-value=9.4e-18 Score=146.83 Aligned_cols=225 Identities=19% Similarity=0.255 Sum_probs=146.4
Q ss_pred CCCCCCChhhHHHHHHhhCCeEEEeeccccchhhhhHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHH-hhhhccCceEE
Q 020714 66 NNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRAL--AKALLQAALERQEEEEEE-VKEEDQKSVAV 142 (322)
Q Consensus 66 dl~~~~~~~~w~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~~~v 142 (322)
+++-......|...++..+..+ .-+ |.+.+-... ++.+ ....+...|+...+.... ..........|
T Consensus 112 py~~~rl~r~~~hl~r~~g~~v-~gs----ges~id~d~-----~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pvi 181 (410)
T KOG0410|consen 112 PYVGGRLERELQHLRRQSGGQV-KGS----GESIIDRDI-----RRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVI 181 (410)
T ss_pred ccccchHHHHHHHHHhcCCCcc-cCc----cchHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceE
Confidence 3677888999999999888763 111 111110000 0111 112222222221111111 12233445678
Q ss_pred EEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE-EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc
Q 020714 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (322)
Q Consensus 143 ~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
.+||++|+||||||++|++... ........|.+++... -...|..+.+.||-||....+ ....+.|..+++++.
T Consensus 182 avVGYTNaGKsTLikaLT~Aal-~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP----~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 182 AVVGYTNAGKSTLIKALTKAAL-YPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP----IQLVAAFQATLEEVA 256 (410)
T ss_pred EEEeecCccHHHHHHHHHhhhc-CccchhheeccchhhhccCCCCcEEEEeechhhhhhCc----HHHHHHHHHHHHHHh
Confidence 9999999999999999995332 2333334444443332 235678889999999987655 667788999999999
Q ss_pred cccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCC-CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 222 LFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPP-KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 222 ~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~-~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
.+|++++|.|++++.-+.. +.+...+..++....+ ...++-|.||+|..+.....+ .+ ..+.+||++
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n---~~v~isalt 325 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KN---LDVGISALT 325 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cC---Ccccccccc
Confidence 9999999999988754433 4777788888764332 355788999999876532211 11 158999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 020714 300 GAGLKALTQYLMEQFKD 316 (322)
Q Consensus 300 g~gi~el~~~i~~~l~~ 316 (322)
|+|++++.+.+...+..
T Consensus 326 gdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVAS 342 (410)
T ss_pred CccHHHHHHHHHHHhhh
Confidence 99999999999887654
No 181
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=4.1e-18 Score=148.89 Aligned_cols=168 Identities=25% Similarity=0.322 Sum_probs=117.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+....+++||.||+|||||+|+|...+- .++..+.||..+..+....++. .+.+-|.||+++..... .. .-..
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n--kG---lG~~ 267 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN--KG---LGYK 267 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccccccc--Cc---ccHH
Confidence 4455689999999999999999998764 6788888998888877666544 49999999998754311 11 1123
Q ss_pred HHhhcccccEEEEEEeCCCCCC-CcHHHHHHHHHHhcc--cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLT-SPDSRVIRLIERMGK--QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~-~~~~~~~~~l~~~~~--~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.+..+..|+.+++|+|.+.... .+...+..+..++.. ....+.|.++|+||+|+.+.+... .+.+......+.+
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V 344 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHV 344 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcE
Confidence 3456778899999999976521 222333333333332 233468899999999997544333 2333333333359
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q 020714 293 FMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~ 313 (322)
+++||++|+|+.++++.|.+.
T Consensus 345 ~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EEeeeccccchHHHHHHHhhc
Confidence 999999999999999988764
No 182
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.77 E-value=9.5e-19 Score=137.54 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=122.8
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeec----CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 210 (322)
...-.|+++++|..-||||||+-++...++.... .....++... +......+.||||+|++.|...-|
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n---~ed~ra~L~IWDTAGQErfHALGP----- 80 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVN---VEDCRADLHIWDTAGQERFHALGP----- 80 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccc---cccceeeeeeeeccchHhhhccCc-----
Confidence 3445789999999999999999888876553211 0111111111 112345678999999987754332
Q ss_pred HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (322)
Q Consensus 211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (322)
-+++.++++++|||++++.++ ..+..|+.++........-+++|+||+||...+.+..+....++..-|.
T Consensus 81 -------IYYRgSnGalLVyDITDrdSF--qKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA- 150 (218)
T KOG0088|consen 81 -------IYYRGSNGALLVYDITDRDSF--QKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA- 150 (218)
T ss_pred -------eEEeCCCceEEEEeccchHHH--HHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-
Confidence 357889999999999775433 5688888888766555567899999999988777777777777776666
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.++++||+.+.||.|+|+.+...+.++
T Consensus 151 ~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 151 LYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred hheecccccccCHHHHHHHHHHHHHHH
Confidence 599999999999999999999888775
No 183
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.77 E-value=8e-19 Score=161.93 Aligned_cols=157 Identities=27% Similarity=0.408 Sum_probs=106.1
Q ss_pred CCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-c--ccchhhh
Q 020714 45 DCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-A--QKGKLRI 100 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~--~~~~~~~ 100 (322)
.+|+|+.+.|||-|+++ + ||+||.+++...+|..||.+.+-.++|-++ . ..+-...
T Consensus 174 rSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~ 253 (562)
T KOG1424|consen 174 RSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKV 253 (562)
T ss_pred hcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccc
Confidence 79999999999999999 4 899999999999999999999988888777 2 2222222
Q ss_pred hHHHHHHHHHHHHHHH-HH----HHHHHhhH---HH---HHHh------h-----hhccCceEEEEEcCCCCchhHHHHH
Q 020714 101 FQEEEEERKHRALAKA-LL----QAALERQE---EE---EEEV------K-----EEDQKSVAVGIIGAPNAGKSSIINY 158 (322)
Q Consensus 101 ~~~~~~~~~~~~~~~~-~~----~~~l~~~~---~~---~~~~------~-----~~~~~~~~v~v~G~~~vGKStlin~ 158 (322)
+++..+..+.-..... +. ...+.+.. .+ .... . +..+..+.|++||+|||||||+||+
T Consensus 254 ~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINa 333 (562)
T KOG1424|consen 254 LKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINA 333 (562)
T ss_pred hhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHH
Confidence 2211100000000000 00 00000000 00 0000 0 1122258999999999999999999
Q ss_pred HhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC
Q 020714 159 MVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (322)
Q Consensus 159 l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 204 (322)
|.|.+...++.+||.|++.++..+ ...+.|+||||++.+....
T Consensus 334 LvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 334 LVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred HhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCCc
Confidence 999999999999999999888654 3567999999999765533
No 184
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.1e-17 Score=160.35 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
.+|+++|.||||||||.|+|+|.+ ..+++-||+|.....+.+...+..+.++|.||.-........ +.+.+-+-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D----E~Var~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED----EKVARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch----HHHHHHHHh
Confidence 459999999999999999999976 468999999999999999999999999999999765553332 233443344
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
-...|+++.|+|+++ -+..+.-.++-+.. +.|+++++|++|....... .-..+.+.+..|. |++++||++
T Consensus 79 ~~~~D~ivnVvDAtn----LeRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGv-PVv~tvA~~ 148 (653)
T COG0370 79 EGKPDLIVNVVDATN----LERNLYLTLQLLEL----GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGV-PVVPTVAKR 148 (653)
T ss_pred cCCCCEEEEEcccch----HHHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCC-CEEEEEeec
Confidence 567799999999954 33333333333332 3569999999998765432 1223455555677 699999999
Q ss_pred CCCHHHHHHHHHHHhhhcC
Q 020714 300 GAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 300 g~gi~el~~~i~~~l~~~~ 318 (322)
|.|++++.+.+.+....+.
T Consensus 149 g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 149 GEGLEELKRAIIELAESKT 167 (653)
T ss_pred CCCHHHHHHHHHHhccccc
Confidence 9999999999998776554
No 185
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1e-17 Score=148.14 Aligned_cols=171 Identities=25% Similarity=0.378 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCC-CCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~ 217 (322)
--|++||.||+||||||+.++..+ +.+...+.||..+..+++.. .+..+++-|.||+++... +.+. =.+.+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL------G~~FL 232 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL------GLRFL 232 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc------cHHHH
Confidence 348999999999999999998765 56788899999988888764 466799999999986543 1111 12344
Q ss_pred hhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 218 SAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~--~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..|.++++|+|++... ..+.........++... ...++|.++|+||+|+....+..+.....+....+....++
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ 312 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL 312 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence 5677889999999997432 22223333333333322 23368899999999988877778777777776555443344
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||.+++|+++|...+.+.+...
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999999888764
No 186
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.76 E-value=5e-18 Score=141.53 Aligned_cols=153 Identities=24% Similarity=0.378 Sum_probs=112.5
Q ss_pred HHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCCeE
Q 020714 25 LFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTDRI 87 (322)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~~i 87 (322)
||.+||.++..+.-. ..+.+|+++.+.|++.|... + ||+|+.+++....|..++...+..+
T Consensus 1 ~~~~~~~~~~~~~~~--~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~v 78 (171)
T cd01856 1 WFPGHMAKALRQIKE--KLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKV 78 (171)
T ss_pred CCchHHHHHHHHHHH--HHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeE
Confidence 789999999988855 66689999999999887654 1 7999987666677988888877778
Q ss_pred EEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeee
Q 020714 88 VFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (322)
Q Consensus 88 ~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~ 166 (322)
++.++ ++.+...+.+.. ...+...... .........++++++|.+|||||||+|+|.+.....
T Consensus 79 i~iSa~~~~gi~~L~~~l--------------~~~l~~~~~~--~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAA--------------KKLLKDIEKL--KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred EEEECCCcccHHHHHHHH--------------HHHHHHHhhh--hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 88888 777777662211 1111100000 011223456899999999999999999999988778
Q ss_pred ecCCCCceeeeEEEEEeeCCccEEEEeCCCcc
Q 020714 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198 (322)
Q Consensus 167 ~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 198 (322)
++..+++|...+..... ..+.++||||+.
T Consensus 143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred ecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 88888988887654332 568999999973
No 187
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.75 E-value=2.8e-17 Score=140.89 Aligned_cols=160 Identities=17% Similarity=0.275 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEe---------------------------eCC----
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMT---------------------------KAD---- 186 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~---------------------------~~~---- 186 (322)
++|+++|..|+|||||+.+|.+.... .....-+.+.......+. ..+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 36899999999999999999754110 000000111000000000 002
Q ss_pred --ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 187 --TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 187 --~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+.||||||... ....++..+..+|++++|+|+..+. ..+.......+...+ ..|+++|
T Consensus 81 ~~~~i~~iDtPG~~~------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiiv 143 (203)
T cd01888 81 LVRHVSFVDCPGHEI------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIV 143 (203)
T ss_pred cccEEEEEECCChHH------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEE
Confidence 5789999999642 2345556677889999999997642 222222223332222 2368999
Q ss_pred EeCCCCCCChhH--HHHHHHHHhcCC--CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 264 MNKVDLVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 264 ~NK~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||+|+...... ..+....+.... ...+++++||++|.|+++|+++|.+.+..
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 144 QNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred EEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 999999753221 112222222211 12369999999999999999999987754
No 188
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=4.2e-17 Score=138.74 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhC--Ceeeee-------------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG--TKVAAV-------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~--~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 204 (322)
-+|+++|.+|||||||+++|++ ..+... ....|+|.......+...+..+.+|||||+..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 3699999999999999999986 222111 1123444444444455667889999999986431
Q ss_pred ChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHH
Q 020714 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQ 282 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~ 282 (322)
......+..+|++++|+|++++.... ...++..+... +.|+++|+||+|+..... ...+....
T Consensus 80 ---------~~~~~~~~~~d~~ilV~d~~~~~~~~---~~~~~~~~~~~---~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 80 ---------GEVERVLSMVDGVLLLVDASEGPMPQ---TRFVLKKALEL---GLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred ---------HHHHHHHHhcCEEEEEEECCCCccHH---HHHHHHHHHHc---CCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 11223467889999999997643222 22223333222 467999999999975432 12222222
Q ss_pred Hhc------CCCCCcEEEeecCCCCCHHHH
Q 020714 283 FKH------LPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 283 ~~~------~~~~~~~~~iSa~~g~gi~el 306 (322)
+.. ..+. +++++||++|.|+.++
T Consensus 145 ~~~~~~~~~~~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 145 FIELGATEEQLDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred HHHhCCccccCcc-CEEEeehhcccccccc
Confidence 211 1233 6999999999877544
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=3.3e-17 Score=160.42 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+.|+++|.+|+|||||+++|++.... ......|.|.+.....+...+..+.+|||||...+ ...+.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f------------~~~~~ 68 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF------------ISNAI 68 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH------------HHHHH
Confidence 36899999999999999999975421 11233566666554445556678999999997532 34455
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChh--HHHHHHHHHhcCCC---CCc
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKK--DLLKVAEQFKHLPG---YER 291 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~---~~~ 291 (322)
..+..+|++++|+|++++...+......++..+ +.| +++|+||+|+.+... ........+....+ ..+
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ 142 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK 142 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 667889999999999875433333333333332 345 999999999986432 12222333322221 347
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++++||++|.|+++++++|...+..
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHh
Confidence 9999999999999999999887654
No 190
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=4.4e-17 Score=138.41 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe------e---------eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK------V---------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~------~---------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 203 (322)
.++|+++|.+++|||||+++|++.. . .......|.|.+.....+...+..+.++||||+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 4689999999999999999997531 0 01112446666665555556677899999999853
Q ss_pred CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH---HH
Q 020714 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL---KV 279 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~---~~ 279 (322)
....+...+..+|++++|+|+..+...+.......+...+ .| +|+|+||+|+.......+ ..
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~------~~~iIvviNK~D~~~~~~~~~~~~~~ 143 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG------VPYIVVFLNKADMVDDEELLELVEME 143 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence 2344556677899999999998765555445555555443 34 789999999975332222 12
Q ss_pred HHHHhcCCC----CCcEEEeecCCCCCH
Q 020714 280 AEQFKHLPG----YERIFMTSGLKGAGL 303 (322)
Q Consensus 280 ~~~~~~~~~----~~~~~~iSa~~g~gi 303 (322)
...+....+ ..+++++||++|.|+
T Consensus 144 i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 144 VRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHhcccccCCeEEEeeCccccCC
Confidence 222222222 257999999999985
No 191
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.75 E-value=2.1e-19 Score=160.52 Aligned_cols=132 Identities=26% Similarity=0.292 Sum_probs=106.8
Q ss_pred CCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec--cccchhhhh
Q 020714 45 DCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE--AQKGKLRIF 101 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~--~~~~~~~~~ 101 (322)
.+|||+.|.|||.|..+ + ||+||++...++.|...+....+++.|..+ ..-|+..+
T Consensus 213 SSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgal- 291 (572)
T KOG2423|consen 213 SSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGAL- 291 (572)
T ss_pred ccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHH-
Confidence 79999999999999999 4 899999999999999999999999988887 55566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE
Q 020714 102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV 181 (322)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~ 181 (322)
..+.+++.+-.. .+..+.|+|+|+|||||||+||.|..+++|.+.+.+|-|..-+...
T Consensus 292 ---------I~llRQf~kLh~-------------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt 349 (572)
T KOG2423|consen 292 ---------IQLLRQFAKLHS-------------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT 349 (572)
T ss_pred ---------HHHHHHHHhhcc-------------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH
Confidence 223333322221 3356889999999999999999999999999999999887644321
Q ss_pred EeeCCccEEEEeCCCcccCCC
Q 020714 182 MTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~ 202 (322)
--.+|+|+|+||+..+..
T Consensus 350 ---LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 350 ---LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred ---HHhceeEecCCCccCCCC
Confidence 135789999999986654
No 192
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.75 E-value=2.2e-17 Score=140.04 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=116.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+.++|+++|.+|||||+|+.++.+..+... .++.. +.......+......+.|+||+|..++.. +..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~------~~~----- 69 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSA------MRD----- 69 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChH------HHH-----
Confidence 357899999999999999999888766543 22222 22222222333345678999999654421 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
..+...|++++||++++..+++.. ..+...+ ........|+++|+||+|+...+.+..+....++..+++. ++++
T Consensus 70 -~~~~~~~gF~lVysitd~~SF~~~--~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~ 145 (196)
T KOG0395|consen 70 -LYIRNGDGFLLVYSITDRSSFEEA--KQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIET 145 (196)
T ss_pred -HhhccCcEEEEEEECCCHHHHHHH--HHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEe
Confidence 235677999999999887666553 3333333 2222334799999999999887777777788888888886 9999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||+.+.+++++|..|.+.+..
T Consensus 146 Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 146 SAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred eccCCcCHHHHHHHHHHHHHh
Confidence 999999999999999998876
No 193
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=1.7e-17 Score=129.21 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=86.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+|+|.+|+|||||+|+|++.....++..+++|...........+..+.++||||+..... .......+..++..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~---~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES---QDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH---HHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch---hhHHHHHHHHHHHHH
Confidence 58999999999999999999987778889999999887666667788889999999875322 111112455677778
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+|++++|+|++.... ......++.+. ...|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~---~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT---EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH---HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC---HHHHHHHHHHh----cCCCEEEEEcC
Confidence 99999999999755222 22334444443 25789999998
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.74 E-value=3.5e-17 Score=155.57 Aligned_cols=153 Identities=15% Similarity=0.229 Sum_probs=102.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee------------------------------eecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA------------------------------AVSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~ 186 (322)
+..++|+++|.+|+|||||+++|+...-. ......|+|.+.....+...+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 35689999999999999999999842111 011246888888877777778
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC--CCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR--HLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~--~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
..+.||||||+..+. ..+...+..+|++++|+|+++ +...+......++..++ ..|+++|+
T Consensus 84 ~~i~liDtpG~~~~~------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivvi 146 (425)
T PRK12317 84 YYFTIVDCPGHRDFV------------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAI 146 (425)
T ss_pred eEEEEEECCCcccch------------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEE
Confidence 899999999976432 122334577899999999976 43333333334444333 13589999
Q ss_pred eCCCCCCChh-H---HHHHHHHHhcCCCC----CcEEEeecCCCCCHHHH
Q 020714 265 NKVDLVTKKK-D---LLKVAEQFKHLPGY----ERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 265 NK~Dl~~~~~-~---~~~~~~~~~~~~~~----~~~~~iSa~~g~gi~el 306 (322)
||+|+..... . ..+....+....++ .+++++||++|.|++++
T Consensus 147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 9999975322 1 12223333322332 36999999999999873
No 195
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=6.5e-17 Score=142.00 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=120.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...-+|+++|+|+||||||+|.|++.+ ..++..+.||.....+.+...|..++++|+||+......-. -.-++.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~-----grG~~v 134 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR-----GRGRQV 134 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCC-----CCccee
Confidence 345689999999999999999999876 45677888999999999999999999999999986543111 011345
Q ss_pred HhhcccccEEEEEEeCCCCCCC-------------------------------------------cHHHHHHHHHHhccc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQ 253 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~-------------------------------------------~~~~~~~~l~~~~~~ 253 (322)
+..++.||++++|+|+...... ....+...+.+++..
T Consensus 135 lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 5678999999999999744321 112344444444432
Q ss_pred CCC---------------------CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 254 APP---------------------KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 254 ~~~---------------------~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
+.. =+|.++|+||+|+... +..+. +.+. ++++++||+.|.|+++|.+.|.+
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~----l~~~---~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELER----LARK---PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHH----HHhc---cceEEEecccCCCHHHHHHHHHH
Confidence 111 1688999999999873 33332 2222 26899999999999999999998
Q ss_pred Hhh
Q 020714 313 QFK 315 (322)
Q Consensus 313 ~l~ 315 (322)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 774
No 196
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.6e-17 Score=127.09 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
-.++-+++|.-|||||+|+-.++.+++.. -....|+...+....+.....++++|||.|++.+.. + +
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfra----------v--t 77 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA----------V--T 77 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH----------H--H
Confidence 46788999999999999999998776532 222223333222222333345789999999875421 1 2
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...++.+.+.++|+|+..+.+- ..+..|+........|+..+++++||.|+...+.+..+..+.|++.+|.. ++++|
T Consensus 78 rsyyrgaagalmvyditrrsty--nhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle~s 154 (215)
T KOG0097|consen 78 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEAS 154 (215)
T ss_pred HHHhccccceeEEEEehhhhhh--hhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEec
Confidence 2457888999999999775433 34667888888777788889999999999888888888889999988885 99999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 020714 297 GLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~~ 317 (322)
|++|+++++.|-.-.+.+..+
T Consensus 155 aktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 155 AKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccccCcHHHHHHHHHHHHHHh
Confidence 999999999987777766654
No 197
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=5.3e-17 Score=138.35 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH-HHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK-VRVESAW 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-~~~~~~~ 217 (322)
.+|+++|.||||||||+|.|++......+. ..++|...........+..+.++||||+..... ...... ...+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHH
Confidence 369999999999999999999987654442 456777666655556788999999999986532 112222 2333333
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH-------HHHHHHHhcCCCCC
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL-------LKVAEQFKHLPGYE 290 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 290 (322)
......|++++|+++.+ .+..+......+..+-.... -.++++|+|++|........ ......+... +.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~-~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~- 154 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKV-LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GG- 154 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHh-HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CC-
Confidence 44578899999999976 66666666666665422111 24689999999977542100 1111222221 11
Q ss_pred cEEEe-----ecCCCCCHHHHHHHHHHHhhhcC
Q 020714 291 RIFMT-----SGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 291 ~~~~i-----Sa~~g~gi~el~~~i~~~l~~~~ 318 (322)
.++.. |+..+.++++|++.|.+.+.+++
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 23333 36678999999999999999854
No 198
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=9.3e-17 Score=156.70 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=103.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..++++|+++|.+|+|||||+++|.+..+.. ...+|.|.+.....+...+ ..+.||||||+..+.. . .
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~------~---r- 152 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS------M---R- 152 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhh------H---H-
Confidence 4577899999999999999999999876543 2334555443333333333 3899999999875421 1 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHH---Hhc-CCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ---FKH-LPGY 289 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~---~~~-~~~~ 289 (322)
...+..+|++++|+|++++...+... .+..... .+.|+++++||+|+.... ......... ... +.+.
T Consensus 153 --~rga~~aDiaILVVda~dgv~~qT~e---~i~~~~~---~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~ 224 (587)
T TIGR00487 153 --ARGAKVTDIVVLVVAADDGVMPQTIE---AISHAKA---ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGD 224 (587)
T ss_pred --HhhhccCCEEEEEEECCCCCCHhHHH---HHHHHHH---cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCC
Confidence 13467789999999997654333222 2222222 257899999999996532 112121111 111 1122
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
.+++++||++|+|+++++++|...
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhhh
Confidence 469999999999999999999753
No 199
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.74 E-value=7.1e-17 Score=161.16 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=105.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..+++.|+++|.+|+|||||+++|.+..+.. +...|.|.+.....+...+..+.||||||+..|.. + ..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~------m---~~- 355 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA------M---RA- 355 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEEEEECCEEEEEEECCCCccchh------H---HH-
Confidence 5678999999999999999999998766542 23345554443333445577899999999875421 1 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHH---Hhc-CCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQ---FKH-LPGYE 290 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~---~~~-~~~~~ 290 (322)
..+..+|++|+|+|+.++...+.... +..... .+.|+|+|+||+|+..... ........ +.. +.+..
T Consensus 356 --rga~~aDiaILVVdAddGv~~qT~e~---i~~a~~---~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 356 --RGAQVTDIVVLVVAADDGVMPQTIEA---INHAKA---AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred --hhhhhCCEEEEEEECCCCCCHhHHHH---HHHHHh---cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence 23567899999999977643333222 222222 2578999999999965321 11111111 111 12234
Q ss_pred cEEEeecCCCCCHHHHHHHHHHH
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
+++++||++|.|+++|+++|...
T Consensus 428 p~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhhh
Confidence 79999999999999999999754
No 200
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.73 E-value=1.6e-16 Score=125.88 Aligned_cols=161 Identities=18% Similarity=0.283 Sum_probs=114.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+.++|.++|..|+||||++++|.+.....+.+..|.... .....+..+.+||..|+.. +++.|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik----tl~~~~~~L~iwDvGGq~~-------------lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK----TLEYKGYTLNIWDVGGQKT-------------LRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE----EEEecceEEEEEEcCCcch-------------hHHHH
Confidence 478999999999999999999999886666665554433 3446788999999999863 34444
Q ss_pred h-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHH--HHHHHhcCCCCC
Q 020714 218 S-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLK--VAEQFKHLPGYE 290 (322)
Q Consensus 218 ~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~--~~~~~~~~~~~~ 290 (322)
. ++..+|++|+|+|.++....++. .+...+.. ....+.|++++.||.|+...- ..+.. ....+.+..-.
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~e---erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~- 153 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVE---ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW- 153 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhh---hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc-
Confidence 4 35777999999999876555443 23333332 233357899999999998432 11111 12223222223
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+++.|||.+|+++.+-++|+.+.+..+.+
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l~~r~~ 182 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDLMSRLF 182 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999998877544
No 201
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=4.7e-17 Score=130.71 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=94.3
Q ss_pred EEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 144 IIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 144 v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
++|++|+|||||+|++.+.... ....... ......... ..+..+.+||+||...... .....+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI--IDFYSKTIEVDGKKVKLQIWDTAGQERFRS------------LRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch--hheeeEEEEECCEEEEEEEEecCChHHHHh------------HHHHHh
Confidence 5799999999999999987652 1111111 111111111 2356789999999764311 113456
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHH-HHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH-HHHHhcCCCCCcEEEeecC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRL-IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-AEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~-l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~iSa~ 298 (322)
..+|++++|+|++....... ...+ ............|+++|+||+|+.......... ...... ....+++++|++
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~ 143 (157)
T cd00882 67 RGADGIILVYDVTDRESFEN--VKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK-ELGVPYFETSAK 143 (157)
T ss_pred cCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh-hcCCcEEEEecC
Confidence 78899999999976433222 2121 112222233468899999999997654332221 222222 334579999999
Q ss_pred CCCCHHHHHHHHH
Q 020714 299 KGAGLKALTQYLM 311 (322)
Q Consensus 299 ~g~gi~el~~~i~ 311 (322)
+|.|+++++++|.
T Consensus 144 ~~~~i~~~~~~l~ 156 (157)
T cd00882 144 TGENVEELFEELA 156 (157)
T ss_pred CCCChHHHHHHHh
Confidence 9999999999986
No 202
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=1e-18 Score=133.62 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=113.1
Q ss_pred EEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 143 ~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+++|.+++|||+|+-++....+..-.-...+..+.....+..+ ...+++|||.|++.+.. -+..++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs------------vt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS------------VTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh------------hhHhhh
Confidence 4689999999999877654433211111111111111222233 45689999999986533 122457
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
+.+|.+++++|+.+..+..+. ..|+.++.......+.+.+++||||+.+.+.+..+..+.+++.++. |+.++||++|
T Consensus 69 rda~allllydiankasfdn~--~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg 145 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNC--QAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTG 145 (192)
T ss_pred cccceeeeeeecccchhHHHH--HHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-Cceecccccc
Confidence 899999999999887777654 4555555444333456899999999988766666777888888888 5999999999
Q ss_pred CCHHHHHHHHHHHhhhcC
Q 020714 301 AGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~~~ 318 (322)
-|++-.|-.|.+.+.+.+
T Consensus 146 ~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 146 FNVDLAFLAIAEELKKLK 163 (192)
T ss_pred ccHhHHHHHHHHHHHHhc
Confidence 999999999999988654
No 203
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.72 E-value=1.3e-16 Score=137.83 Aligned_cols=163 Identities=13% Similarity=0.118 Sum_probs=104.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++|+++|++|||||||++++..+.+. ...+..+............+...+.+|||+|...+.. +.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----------~~- 75 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----------LR- 75 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh----------hh-
Confidence 34689999999999999999876654432 2223333322222211223346788999999764321 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..++++++|+|+++..+. ..+..|+..+... ..+.|+++|+||+|+....... ... .+....+. .++++
T Consensus 76 -~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~-~~~-~~~~~~~~-~~~e~ 148 (215)
T PTZ00132 76 -DGYYIKGQCAIIMFDVTSRITY--KNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKA-RQI-TFHRKKNL-QYYDI 148 (215)
T ss_pred -HHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCH-HHH-HHHHHcCC-EEEEE
Confidence 1234577999999999765433 2344555554422 2357899999999986532211 112 23333444 58999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|+++.+.+|.+.+..+
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999988653
No 204
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=1.3e-16 Score=157.95 Aligned_cols=160 Identities=14% Similarity=0.221 Sum_probs=102.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE--EEee--CCccEEEEeCCCcccCCCCCChhhHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG--VMTK--ADTQICIFDTPGLMLNKSGYSHKDVKV 211 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~ 211 (322)
..++.+|+++|.+|+|||||+++|.+..+.. ....|.|.+.... .+.. .+..+.||||||+..|.
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~---------- 309 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS---------- 309 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH----------
Confidence 4577899999999999999999998765542 2223333321111 1222 35789999999975321
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHH---hc-C
Q 020714 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQF---KH-L 286 (322)
Q Consensus 212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~---~~-~ 286 (322)
......+..+|++++|+|+.++...+.... +..+.. .+.|+|+|+||+|+..... ...+..... .. .
T Consensus 310 --~mr~rg~~~aDiaILVVDA~dGv~~QT~E~---I~~~k~---~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 310 --SMRSRGANVTDIAILIIAADDGVKPQTIEA---INYIQA---ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred --HHHHHHHHHCCEEEEEEECcCCCChhhHHH---HHHHHh---cCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 111134577899999999977644333222 222222 2578999999999975421 111111111 11 1
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.+..+++++||++|.|+++|+++|....
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 2334799999999999999999998764
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.72 E-value=1.1e-16 Score=127.08 Aligned_cols=140 Identities=18% Similarity=0.299 Sum_probs=94.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|++|+|||||+++|.+.... ...| +. +...+ .++||||--... ...+.......
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KT---q~--i~~~~---~~IDTPGEyiE~--------~~~y~aLi~ta 61 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKT---QA--IEYYD---NTIDTPGEYIEN--------PRFYHALIVTA 61 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCcc---ce--eEecc---cEEECChhheeC--------HHHHHHHHHHH
Confidence 6999999999999999999886532 1111 11 11223 459999964221 22344444556
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..||+++++.|++.+.+..-..+. .. -++|+|-|+||+|+.....+.+... .+...-|..++|++|+.+|
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa---~~------f~~pvIGVITK~Dl~~~~~~i~~a~-~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFA---SM------FNKPVIGVITKIDLPSDDANIERAK-KWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhh---cc------cCCCEEEEEECccCccchhhHHHHH-HHHHHcCCCCeEEEECCCC
Confidence 789999999999765433222221 11 1467999999999985445554433 3444457778999999999
Q ss_pred CCHHHHHHHHH
Q 020714 301 AGLKALTQYLM 311 (322)
Q Consensus 301 ~gi~el~~~i~ 311 (322)
+||++|.++|.
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999999885
No 206
>PRK09866 hypothetical protein; Provisional
Probab=99.71 E-value=2e-15 Score=144.43 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=77.9
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.|+||||+..... ........ ..+..+|+|++|+|+....+..+..+...+...+. ..|+++|+||
T Consensus 230 ~QIIFVDTPGIhk~~~----~~L~k~M~---eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K----~~PVILVVNK 298 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ----PHLQKMLN---QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQ----SVPLYVLVNK 298 (741)
T ss_pred CCEEEEECCCCCCccc----hHHHHHHH---HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCC----CCCEEEEEEc
Confidence 5688999999985432 11111122 25788899999999977666666666666655332 2479999999
Q ss_pred CCCCCChh----HHHHHHHHH--hcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 267 VDLVTKKK----DLLKVAEQF--KHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 267 ~Dl~~~~~----~~~~~~~~~--~~~~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
+|+.+... ......... .....+..+|++||+.|.|+++|++.|...
T Consensus 299 IDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 299 FDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 99964222 222222212 122335579999999999999999999873
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.70 E-value=4.4e-16 Score=153.06 Aligned_cols=159 Identities=14% Similarity=0.266 Sum_probs=106.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.|+++|.+++|||||+++|++..... .....|.|.+.....+. ..+..+.||||||+..+ ...++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f------------i~~m~ 69 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF------------LSNML 69 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH------------HHHHH
Confidence 58999999999999999999754221 22334666554433332 24567899999998532 34455
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--H-HHHHHHHHhcCC-CCCcEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--D-LLKVAEQFKHLP-GYERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~-~~~~~~~~~~~~-~~~~~~ 293 (322)
..+..+|++++|+|+..+...+......++..++. .++++|+||+|+.+... . ..+....+.... ...+++
T Consensus 70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi-----~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii 144 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLTGN-----PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLF 144 (614)
T ss_pred HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCC-----CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 66788999999999987665555445455544331 13689999999975321 1 122222222221 124799
Q ss_pred EeecCCCCCHHHHHHHHHHHhhh
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++||++|+|+++|+++|.+....
T Consensus 145 ~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 145 VTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred EEeCCCCCCCHHHHHHHHHhhcc
Confidence 99999999999999999876544
No 208
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=2.2e-16 Score=154.80 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeee--------eec------CCCCceeeeEEEEEee---C--CccEEEEeCCCccc
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVMTK---A--DTQICIFDTPGLML 199 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~--------~~~------~~~~~t~~~~~~~~~~---~--~~~~~l~DtpG~~~ 199 (322)
.-+++++|.+++|||||+++|+...-. ... ...|.|.......+.. + ...+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 347999999999999999999753210 111 1225555443332222 2 25789999999975
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~ 279 (322)
+.. .....+..||++++|+|++++...+.... +..... .+.|+++|+||+|+.... ....
T Consensus 83 F~~------------~v~~~l~~aD~aILVvDat~g~~~qt~~~--~~~~~~----~~ipiIiViNKiDl~~~~--~~~~ 142 (595)
T TIGR01393 83 FSY------------EVSRSLAACEGALLLVDAAQGIEAQTLAN--VYLALE----NDLEIIPVINKIDLPSAD--PERV 142 (595)
T ss_pred HHH------------HHHHHHHhCCEEEEEecCCCCCCHhHHHH--HHHHHH----cCCCEEEEEECcCCCccC--HHHH
Confidence 421 12234677899999999987654443322 221111 146799999999996532 1222
Q ss_pred HHHHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 280 AEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 280 ~~~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
...+.+..+.. +++++||++|.|+++++++|.+.+..
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 23333333332 48999999999999999999988764
No 209
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.70 E-value=1.9e-16 Score=130.12 Aligned_cols=128 Identities=25% Similarity=0.282 Sum_probs=93.2
Q ss_pred CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeE-EEeec-cccchhhh
Q 020714 44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRI-VFGEE-AQKGKLRI 100 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i-~f~~~-~~~~~~~~ 100 (322)
+.+|+++.+.|++.|... + ||+|+.+++....|..+|.+..... +..++ .+.+...+
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSL 86 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHH
Confidence 369999999999998654 2 7999988877788999998765443 44555 56666555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEE
Q 020714 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG 180 (322)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~ 180 (322)
.+.. ...+.. .......+|+++|.||||||||+|+|.+.....++..+|+|+.....
T Consensus 87 ~~~l----------~~~~~~-------------~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~ 143 (157)
T cd01858 87 IQLL----------RQFSKL-------------HSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI 143 (157)
T ss_pred HHHH----------HHHHhh-------------hccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE
Confidence 2111 111110 00124578999999999999999999999888999999999876543
Q ss_pred EEeeCCccEEEEeCCCc
Q 020714 181 VMTKADTQICIFDTPGL 197 (322)
Q Consensus 181 ~~~~~~~~~~l~DtpG~ 197 (322)
. .+..+.++||||+
T Consensus 144 ~---~~~~~~liDtPGi 157 (157)
T cd01858 144 T---LMKRIYLIDCPGV 157 (157)
T ss_pred E---cCCCEEEEECcCC
Confidence 2 2346899999996
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=3.8e-16 Score=152.23 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=97.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-ceeeeEEEEEee------------------CCccEEEEeCCCcc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTK------------------ADTQICIFDTPGLM 198 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-~t~~~~~~~~~~------------------~~~~~~l~DtpG~~ 198 (322)
+++.|+++|.+|+|||||+|+|.+..+.. ..+| +|.+.-...+.. ....+.||||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 45679999999999999999999875532 2222 222100000000 01248999999986
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh----
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---- 274 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---- 274 (322)
.+.. + ....+..+|++++|+|++++...+......++.. . +.|+++|+||+|+.....
T Consensus 81 ~f~~------l------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~---~---~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 81 AFTN------L------RKRGGALADLAILIVDINEGFKPQTQEALNILRM---Y---KTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred hHHH------H------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH---c---CCCEEEEEECCCccchhhhccC
Confidence 4321 1 1124578899999999987654443333333322 2 467999999999974210
Q ss_pred ----------------HH----HHHHHHHh-------------cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 275 ----------------DL----LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 275 ----------------~~----~~~~~~~~-------------~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.. ......+. +..+..+++++||++|+|+++|+++|....
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 00001111 223445899999999999999999987544
No 211
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=4.3e-16 Score=134.34 Aligned_cols=172 Identities=19% Similarity=0.250 Sum_probs=117.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++++.++|.+|+|||||||+|+......+...+.++...+......++..+.||||||+.+... ...+.-..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~-----~D~~~r~~ 110 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD-----KDAEHRQL 110 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchh-----hhHHHHHH
Confidence 4568899999999999999999999776665555444444444434446678899999999986432 11222334
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-----------hH----HH---
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-----------KD----LL--- 277 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-----------~~----~~--- 277 (322)
..+.+...|++++++++.++.-.-+..+..-+..... +.++++++|.+|...+. .. .+
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 4455677799999999987765555433333322221 36799999999987541 01 11
Q ss_pred -HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 278 -KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 278 -~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
...+.+. ...|++..|++.++|++++...+++++..+..
T Consensus 187 ~~~~~~~q---~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 187 EALGRLFQ---EVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHHHh---hcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 1122222 24578999999999999999999999986543
No 212
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.3e-17 Score=131.21 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeee-----eecCCCCceeeeEEEEEe-----eCCccEEEEeCCCcccCCCCCChhhH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTNTTTHEVLGVMT-----KADTQICIFDTPGLMLNKSGYSHKDV 209 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~-----~~~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~~~~~~ 209 (322)
++...+|.+||||||++-+.+..++. .++...-..+-....... .....+++|||+|++.|.. .
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS------L 83 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS------L 83 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH------H
Confidence 45677899999999999887765432 222211111110000000 0013578999999986532 1
Q ss_pred HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC
Q 020714 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG 288 (322)
Q Consensus 210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 288 (322)
.. ..++.|=+++++||.++..+. ..+..|+..+... ...+.-+++++||+|+.+.+.+.+.....+++.++
T Consensus 84 TT------AFfRDAMGFlLiFDlT~eqSF--LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg 155 (219)
T KOG0081|consen 84 TT------AFFRDAMGFLLIFDLTSEQSF--LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG 155 (219)
T ss_pred HH------HHHHhhccceEEEeccchHHH--HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC
Confidence 11 235666789999999764333 3577888877643 23344589999999999988888888899999999
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 289 YERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
. |+|++||-+|.|+++..+.+...+.+
T Consensus 156 l-PYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 156 L-PYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred C-CeeeeccccCcCHHHHHHHHHHHHHH
Confidence 8 59999999999999988887776544
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=7.3e-16 Score=133.73 Aligned_cols=153 Identities=17% Similarity=0.253 Sum_probs=97.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeee------e--c-----CCCCcee------------------------eeEEEEEe
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAA------V--S-----RKTNTTT------------------------HEVLGVMT 183 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~------~--~-----~~~~~t~------------------------~~~~~~~~ 183 (322)
+|+++|..++|||||++++....+.. . . ...|.|. ......+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 47899999999999999998532211 0 0 0001111 00012233
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc--ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (322)
..+..+.++||||...+ ...++..+ ..+|++++|+|+..+....+.....++...+ .|++
T Consensus 81 ~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~------ip~i 142 (224)
T cd04165 81 KSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN------IPVF 142 (224)
T ss_pred eCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEE
Confidence 45678899999997633 12222333 3689999999998776666556666665544 5699
Q ss_pred EEEeCCCCCCChhHHHHHH----HHHh------------------------cCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 262 LCMNKVDLVTKKKDLLKVA----EQFK------------------------HLPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 262 vV~NK~Dl~~~~~~~~~~~----~~~~------------------------~~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
+|+||+|+.... ...... ..+. ......|+|.+||.+|+|+++|++.|..
T Consensus 143 vvvNK~D~~~~~-~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 143 VVVTKIDLAPAN-ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEEECccccCHH-HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999999987542 222222 2222 1223448999999999999999988754
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=2.9e-16 Score=136.14 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=93.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeCCccEE
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKADTQIC 190 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~ 190 (322)
+|+++|.+++|||||+.+|+... ........|+|++.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999986310 001112346777777766777888999
Q ss_pred EEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
++||||+..+ ....+..+..+|++++|+|++.+. ..+..........++ ..|+++|
T Consensus 81 liDtpG~~~~------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~iiiv 143 (219)
T cd01883 81 ILDAPGHRDF------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLG-----VKQLIVA 143 (219)
T ss_pred EEECCChHHH------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcC-----CCeEEEE
Confidence 9999997532 223344567789999999997642 111112222222222 2469999
Q ss_pred EeCCCCCCC---hhHHHHHHHH---HhcCCCC----CcEEEeecCCCCCHH
Q 020714 264 MNKVDLVTK---KKDLLKVAEQ---FKHLPGY----ERIFMTSGLKGAGLK 304 (322)
Q Consensus 264 ~NK~Dl~~~---~~~~~~~~~~---~~~~~~~----~~~~~iSa~~g~gi~ 304 (322)
+||+|+... .......... +....+. .+++++||++|.||+
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 999999742 2222222222 1222222 469999999999987
No 215
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=1.1e-15 Score=138.84 Aligned_cols=165 Identities=19% Similarity=0.208 Sum_probs=107.5
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------------CCccEEEEeCCCc
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTPGL 197 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~DtpG~ 197 (322)
|+++|.||||||||+|+|++... .+++.|++|..+..+.... ....+.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57999999999999999998764 5677788887766654321 2246899999999
Q ss_pred ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-----------CcHH-------HHHH--------------
Q 020714 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-----------SPDS-------RVIR-------------- 245 (322)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-----------~~~~-------~~~~-------------- 245 (322)
..... .....-...+..++.||++++|+|++.... .+.. ++..
T Consensus 80 v~ga~-----~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~ 154 (318)
T cd01899 80 VPGAH-----EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV 154 (318)
T ss_pred CCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74321 111223456677899999999999963110 0000 0000
Q ss_pred ------------------------------HHHHhccc------------------CCCCCcEEEEEeCCCCCCChhHHH
Q 020714 246 ------------------------------LIERMGKQ------------------APPKQKRVLCMNKVDLVTKKKDLL 277 (322)
Q Consensus 246 ------------------------------~l~~~~~~------------------~~~~~p~ivV~NK~Dl~~~~~~~~ 277 (322)
.++.-... -...+|+|+|+||+|+........
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~ 234 (318)
T cd01899 155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS 234 (318)
T ss_pred HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH
Confidence 00000000 022479999999999864332222
Q ss_pred HHHHHHhcCCCCCcEEEeecCCCCCHHHHHH-HHHHHhhh
Q 020714 278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQ-YLMEQFKD 316 (322)
Q Consensus 278 ~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~-~i~~~l~~ 316 (322)
.+.......+++++||+.+.|+++|.+ .+.+.+.+
T Consensus 235 ----~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 235 ----KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred ----HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 222223345799999999999999998 69988865
No 216
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=8.9e-16 Score=145.92 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=99.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC--eee----------------------------eecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA----------------------------AVSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~----------------------------~~~~~~~~t~~~~~~~~~~~~ 186 (322)
...++|+++|..++|||||+++|+.. .+. ......|.|.+.....+...+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45789999999999999999999741 110 011234677776666666778
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHH---HHHHHHhcccCCCCCcEEEE
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRV---IRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~---~~~l~~~~~~~~~~~p~ivV 263 (322)
..+.||||||+..+ ...++..+..+|++++|+|++++..+..... ..+...++ ..++++|
T Consensus 85 ~~i~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVv 147 (426)
T TIGR00483 85 YEVTIVDCPGHRDF------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVA 147 (426)
T ss_pred eEEEEEECCCHHHH------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEE
Confidence 88999999997532 2334445678999999999987633221111 12222222 2469999
Q ss_pred EeCCCCCCCh-hHH---HHHHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714 264 MNKVDLVTKK-KDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKA 305 (322)
Q Consensus 264 ~NK~Dl~~~~-~~~---~~~~~~~~~~~~~----~~~~~iSa~~g~gi~e 305 (322)
+||+|+.... ... ......+....++ .+++++||++|.|+++
T Consensus 148 iNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9999997522 211 2223333333332 4699999999999986
No 217
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.68 E-value=3.1e-16 Score=126.48 Aligned_cols=109 Identities=28% Similarity=0.451 Sum_probs=83.0
Q ss_pred CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhh
Q 020714 44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIF 101 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~ 101 (322)
+.+|+++.+.|++.|... + ||+|+.+++....|..++...+..+++.++ ++.+
T Consensus 10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~----- 84 (141)
T cd01857 10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA----- 84 (141)
T ss_pred hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-----
Confidence 468999999999988765 2 567776666556677777666666666655 2211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE
Q 020714 102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV 181 (322)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~ 181 (322)
+++++|.||||||||+|+|.+.....++..+|+|++.....
T Consensus 85 ---------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~ 125 (141)
T cd01857 85 ---------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF 125 (141)
T ss_pred ---------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE
Confidence 58999999999999999999998888888899888866533
Q ss_pred EeeCCccEEEEeCCCccc
Q 020714 182 MTKADTQICIFDTPGLML 199 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~ 199 (322)
+ +..+.++||||+..
T Consensus 126 ~---~~~~~i~DtpG~~~ 140 (141)
T cd01857 126 L---TPTITLCDCPGLVF 140 (141)
T ss_pred e---CCCEEEEECCCcCC
Confidence 3 23689999999974
No 218
>CHL00071 tufA elongation factor Tu
Probab=99.67 E-value=6.1e-16 Score=146.06 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=106.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCee---------------eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV---------------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
....++|+++|.+++|||||+|+|++... .......|.|.+.....+...+..+.|+||||+..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~- 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD- 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-
Confidence 45678999999999999999999986311 11122356776665555555677899999999642
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH--
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL-- 277 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~-- 277 (322)
.+..++..+..+|++++|+|+..+...+......++..++ .| +|+++||+|+.......+
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g------~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG------VPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEccCCCCHHHHHHHH
Confidence 2444455677889999999998766555545555444433 45 778999999986433221
Q ss_pred -HHHHHHhcCCC----CCcEEEeecCCCCC------------------HHHHHHHHHHHh
Q 020714 278 -KVAEQFKHLPG----YERIFMTSGLKGAG------------------LKALTQYLMEQF 314 (322)
Q Consensus 278 -~~~~~~~~~~~----~~~~~~iSa~~g~g------------------i~el~~~i~~~l 314 (322)
.....+....+ ..+++++||.+|.+ +..|++.|...+
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 12222222222 24799999999973 466777766654
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.67 E-value=1.7e-15 Score=142.34 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=108.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCee----------e-----eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV----------A-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~----------~-----~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
.+..++|+++|.+++|||||+++|++... . ......|.|.+.....+...+..+.|+||||+..+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45678999999999999999999986210 0 11124567776655445455678899999997532
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH--
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL-- 277 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~-- 277 (322)
+..++..+..+|++++|+|+..+...+......++... ++| +|+|+||+|+....+..+
T Consensus 89 ------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 89 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV------GVPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHH
Confidence 34445556788999999999776555444444544443 345 678999999975432221
Q ss_pred -HHHHHHhcCCC----CCcEEEeecCCCC--------CHHHHHHHHHHHhh
Q 020714 278 -KVAEQFKHLPG----YERIFMTSGLKGA--------GLKALTQYLMEQFK 315 (322)
Q Consensus 278 -~~~~~~~~~~~----~~~~~~iSa~~g~--------gi~el~~~i~~~l~ 315 (322)
.....+....+ ..+++++||++|. ++.+|++.|.+.+.
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 12222222222 2479999999983 68899999888765
No 220
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=1.5e-15 Score=143.17 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=98.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeE--------------------EEEEee------CCccE
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEV--------------------LGVMTK------ADTQI 189 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~--------------------~~~~~~------~~~~~ 189 (322)
..++|+++|.+++|||||+++|.+..... .....|.|.... ...+.. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46789999999999999999997642211 000112221111 000000 13578
Q ss_pred EEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (322)
Q Consensus 190 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D 268 (322)
.++||||+..+ ...++..+..+|++++|+|++.+. ..+.......+..++ ..|+++|+||+|
T Consensus 83 ~liDtPGh~~f------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~D 145 (406)
T TIGR03680 83 SFVDAPGHETL------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKID 145 (406)
T ss_pred EEEECCCHHHH------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEccc
Confidence 99999997532 233445566789999999998754 333333333333332 235899999999
Q ss_pred CCCChhH--HHHHHHHHhcCC--CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 269 LVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 269 l~~~~~~--~~~~~~~~~~~~--~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+...... .......+.... ...+++++||++|+|+++|+++|...+.
T Consensus 146 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 146 LVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 9764321 111122222111 1236999999999999999999998754
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.66 E-value=2.3e-15 Score=141.53 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=107.1
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCC-------eee--------eecCCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT-------KVA--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~-------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 199 (322)
..+..++|+++|.+++|||||+++|++. ... ......|.|.+.....+...+..+.|+||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3456789999999999999999999852 110 1112346666655544545667899999999752
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE-EEEeCCCCCCChhH---
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKD--- 275 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i-vV~NK~Dl~~~~~~--- 275 (322)
.+..+...+..+|++++|+|+..+...+.......+... ++|.+ +|+||+|+......
T Consensus 88 ------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~ 149 (396)
T PRK12735 88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred ------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHH
Confidence 234555667788999999999776544433333333332 34554 68999999753221
Q ss_pred HHHHHHHHhcCCC----CCcEEEeecCCCC----------CHHHHHHHHHHHhh
Q 020714 276 LLKVAEQFKHLPG----YERIFMTSGLKGA----------GLKALTQYLMEQFK 315 (322)
Q Consensus 276 ~~~~~~~~~~~~~----~~~~~~iSa~~g~----------gi~el~~~i~~~l~ 315 (322)
.......+....+ ..+++++||++|. |+.+|++.|...+.
T Consensus 150 ~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1212223332222 2468999999994 78899999988653
No 222
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.66 E-value=2e-15 Score=148.19 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe--ee------ee------cCCCCceeeeEEEEEee-----CCccEEEEeCCCccc
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK--VA------AV------SRKTNTTTHEVLGVMTK-----ADTQICIFDTPGLML 199 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~--~~------~~------~~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG~~~ 199 (322)
.-+++++|..++|||||+++|+... +. .. ....|.|.......+.+ .+..+.||||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 4579999999999999999997521 10 00 11224444332222222 245789999999975
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~ 279 (322)
+.. .....+..+|++++|+|++.+...+......+... .+.|+++|+||+|+..... ...
T Consensus 87 F~~------------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~--~~v 146 (600)
T PRK05433 87 FSY------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADP--ERV 146 (600)
T ss_pred HHH------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccH--HHH
Confidence 421 12234567899999999987654433222222211 1467999999999865321 222
Q ss_pred HHHHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 280 AEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 280 ~~~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
...+.+..+.. .++++||++|.|+++++++|.+.+..
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22333323332 48999999999999999999988764
No 223
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.66 E-value=1.8e-15 Score=124.04 Aligned_cols=124 Identities=24% Similarity=0.244 Sum_probs=84.8
Q ss_pred CCCCCC-CCCCCCCCCCChhhHHHHHHhh-CCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 020714 56 RIPTID-DPQNNNAAKKQEPTWDEKYRER-TDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV 132 (322)
Q Consensus 56 ~~p~~~-~~k~dl~~~~~~~~w~~~~~~~-~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 132 (322)
..|.+. -||+|+++++....|..++... +..+++.++ ++.+...+.+... .......+ .. ..
T Consensus 29 ~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~----------~~~~~~~~----~~-~~ 93 (155)
T cd01849 29 GKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFT----------KQTNSNLK----SY-AK 93 (155)
T ss_pred CCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHH----------HHhHHHHH----HH-Hh
Confidence 344444 5899998887777898777654 455788888 7777776632211 11100010 00 01
Q ss_pred hhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCc
Q 020714 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (322)
Q Consensus 133 ~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 197 (322)
........+++++|.||||||||+|+|.+.....++..+++|+....... +..+.++||||+
T Consensus 94 ~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 94 DGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 11234578899999999999999999999887778888999988776433 357899999996
No 224
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.65 E-value=3.3e-15 Score=130.80 Aligned_cols=113 Identities=19% Similarity=0.330 Sum_probs=75.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCee-----eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKV-----AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 203 (322)
+|+++|.+|+|||||+++|+...- ..+. ...+.|.......+...+..+.+|||||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999975311 1011 112333333444455678899999999997541
Q ss_pred CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
..+...+..+|++++|+|+..+...+...+...+.. . +.|+++++||+|+..
T Consensus 79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~---~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK---L---NIPTIIFVNKIDRAG 130 (237)
T ss_pred ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH---c---CCCEEEEEECccccC
Confidence 123345677799999999987654433334443333 2 467999999999975
No 225
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.65 E-value=7.3e-15 Score=127.10 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=107.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.++|+++|++|||||||++++.+..+.................... ....+.+|||+|+..+ +..+
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------------~~~~ 71 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------------RSLR 71 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------------HHHH
Confidence 3899999999999999999999887664443222222222222211 1456899999998743 2222
Q ss_pred -hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHH------------HHHHh
Q 020714 218 -SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV------------AEQFK 284 (322)
Q Consensus 218 -~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~------------~~~~~ 284 (322)
..+..++++++++|...... .......|...+........|+++|+||+|+.......... .....
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRES-SDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHhcCCCEEEEEEecccchh-hhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 34588999999999975322 22334456656555443468899999999998764321111 11111
Q ss_pred --cCCCCCcEEEeecC--CCCCHHHHHHHHHHHhhh
Q 020714 285 --HLPGYERIFMTSGL--KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 285 --~~~~~~~~~~iSa~--~g~gi~el~~~i~~~l~~ 316 (322)
.......++++|++ ++.|+++++..+...+..
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 11112238999999 999999999999988864
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.65 E-value=3.4e-15 Score=127.36 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCC---ceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTN---TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~---~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
+++|+++|.+|||||||+|+|++......+. ..+ +|..... +.......+.+|||||+..... . ....++
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~~--~---~~~~l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTAF--P---PDDYLE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCcccC--C---HHHHHH
Confidence 3689999999999999999999854332111 111 2222111 1111235789999999875322 1 111122
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ 282 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~ 282 (322)
. ..+..+|+++++.+. +.+..+..+..++... +.|+++|+||+|+..... ...+....
T Consensus 75 ~--~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 75 E--MKFSEYDFFIIISST--RFSSNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred H--hCccCcCEEEEEeCC--CCCHHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 1 235678998888543 4455555555555553 356999999999954211 12222222
Q ss_pred HhcC-----CCCCcEEEeecC--CCCCHHHHHHHHHHHhhhc
Q 020714 283 FKHL-----PGYERIFMTSGL--KGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 283 ~~~~-----~~~~~~~~iSa~--~g~gi~el~~~i~~~l~~~ 317 (322)
+... ...+++|.+|+. .+.|+..|.+.|...+.++
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2211 124579999999 6899999999999999875
No 227
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.65 E-value=1.2e-15 Score=134.18 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=111.4
Q ss_pred CCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCCh-hhHHHHHHhhCCeEEEeec-cccchhh
Q 020714 43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQE-PTWDEKYRERTDRIVFGEE-AQKGKLR 99 (322)
Q Consensus 43 ~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~-~~w~~~~~~~~~~i~f~~~-~~~~~~~ 99 (322)
...+|.++.+.|++.|.++ + ||+||.+.... ..|..+|...+..+++.++ ++.+..+
T Consensus 34 ~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~e 113 (245)
T TIGR00157 34 VANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKE 113 (245)
T ss_pred cccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHH
Confidence 3478888888888877743 2 89999765443 4788999888888888998 7777766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCC
Q 020714 100 IFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTN 172 (322)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~ 172 (322)
+++ .+. ...++++|+||||||||||+|.+.....++. ..+
T Consensus 114 Lf~--------------~l~-------------------~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~h 160 (245)
T TIGR00157 114 LIE--------------ALQ-------------------NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKH 160 (245)
T ss_pred HHh--------------hhc-------------------CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCC
Confidence 611 110 1248899999999999999999865443332 234
Q ss_pred ceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 173 ~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
||+......+ .+ ..++||||+..+.. ......+...|.........|. |.-+.|..++.+.+.+.++.
T Consensus 161 TT~~~~l~~l-~~---~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~-----f~~C~H~~ep~C~v~~a~~~ 229 (245)
T TIGR00157 161 TTTHVELFHF-HG---GLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECK-----FRDCLHQSEPGCAVRQAVEQ 229 (245)
T ss_pred cCCceEEEEc-CC---cEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCC-----CCCCccCCCCCChHHHHHHc
Confidence 6766665443 22 38999999987764 3333555555555444444443 44456778888887776653
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.64 E-value=3.5e-15 Score=140.74 Aligned_cols=163 Identities=20% Similarity=0.301 Sum_probs=100.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEe-------------------e--C-----Ccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMT-------------------K--A-----DTQ 188 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~-------------------~--~-----~~~ 188 (322)
...++|+++|..++|||||+.+|.+.... ......|.|......... . + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999763211 111112333322110000 0 0 257
Q ss_pred EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
+.||||||...+ ...++.....+|++++|+|++.+. ..+......++...+ ..|+++|+||+
T Consensus 87 i~liDtPG~~~f------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~-----i~~iiVVlNK~ 149 (411)
T PRK04000 87 VSFVDAPGHETL------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG-----IKNIVIVQNKI 149 (411)
T ss_pred EEEEECCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEEee
Confidence 899999997532 334455567789999999998654 233333333433322 23589999999
Q ss_pred CCCCChhHH--HHHHHHHhcC--CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 268 DLVTKKKDL--LKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 268 Dl~~~~~~~--~~~~~~~~~~--~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
|+....... .+....+... ....+++++||++|.|+++|+++|...+..
T Consensus 150 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 150 DLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 997643211 1222222221 112469999999999999999999987653
No 229
>PRK12289 GTPase RsgA; Reviewed
Probab=99.64 E-value=1.7e-15 Score=139.05 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=105.0
Q ss_pred CCCCceEEEccccCCCCCC---------------------CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhh
Q 020714 43 ENDCDSVFDSSYFRIPTID---------------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRI 100 (322)
Q Consensus 43 ~~~~d~v~~~~da~~p~~~---------------------~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~ 100 (322)
...+|.++-+.|+.-|.+. -||+||++.+....|..+|...++.+++.++ ++.|...+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEAL 166 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence 3468877766666544322 2899999877778999999888888999998 77887666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-------c
Q 020714 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------T 173 (322)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-------~ 173 (322)
++ .+. ...++|+|+||||||||||+|++.....++..++ |
T Consensus 167 ~~--------------~L~-------------------~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHT 213 (352)
T PRK12289 167 LE--------------QLR-------------------NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHT 213 (352)
T ss_pred hh--------------hhc-------------------cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCc
Confidence 11 110 1137999999999999999999876666665555 6
Q ss_pred eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHH
Q 020714 174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI 244 (322)
Q Consensus 174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~ 244 (322)
|++.....+.. + ..|+||||+..+......+.+...|........ ..-+-+-| +.|..++.+.+.
T Consensus 214 T~~~~l~~l~~-g--~~liDTPG~~~~~l~~~~~~l~~~F~e~~~~~~--~~~CrF~d-C~H~~EPgCaV~ 278 (352)
T PRK12289 214 TRHVELFELPN-G--GLLADTPGFNQPDLDCSPRELAHYFPEARQRLA--QGNCQFND-CLHRDEPNCAVR 278 (352)
T ss_pred CceeEEEECCC-C--cEEEeCCCccccccccCHHHHHhhHHHHHHhHh--hCceEccC-CccCCCCChhhh
Confidence 76665433322 2 389999999887653333444444443322210 01222334 455566666544
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=4.6e-15 Score=139.54 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=101.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC------eee---------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
.+..++|+++|..++|||||+++|++. ... ......|.|.+.....+...+..+.||||||+..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 456789999999999999999999742 100 11123567777655555455667999999998643
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHH--
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL-- 277 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~-- 277 (322)
...++.....+|++++|+|+..+...+......++...+ .| +|+|+||+|+.......+
T Consensus 89 ------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~~ 150 (394)
T TIGR00485 89 ------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLELV 150 (394)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEecccCCHHHHHHHH
Confidence 233444557789999999997755444434444443332 34 457899999976433222
Q ss_pred -HHHHHHhcCCCC----CcEEEeecCCCC--------CHHHHHHHHHHH
Q 020714 278 -KVAEQFKHLPGY----ERIFMTSGLKGA--------GLKALTQYLMEQ 313 (322)
Q Consensus 278 -~~~~~~~~~~~~----~~~~~iSa~~g~--------gi~el~~~i~~~ 313 (322)
.....+....+. .+++++||++|. ++.++++.|...
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 151 EMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 223333333332 479999999885 345555555543
No 231
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.64 E-value=8.1e-15 Score=136.96 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------------CCccEEEEeCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTP 195 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~Dtp 195 (322)
++|+++|.||||||||+|+|++... .++..+++|.....+.... ....+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5799999999999999999998865 4567788887777654321 12457899999
Q ss_pred CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s 233 (322)
|+..... .....-.+.+..++.||++++|+|+.
T Consensus 81 Gl~~ga~-----~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH-----EGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9975321 11122345667789999999999996
No 232
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.63 E-value=9.2e-16 Score=127.77 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=114.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-AD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..+++.+||..++|||+|+-.+..+.++.... |.+. +........ ++ ..+.+|||.|++++....+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv-PTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp--------- 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYV-PTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP--------- 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCccccc-CeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccc---------
Confidence 35789999999999999998887665443221 1111 111111222 23 4568999999997754222
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ 282 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~~ 282 (322)
-.+..+|+++++|++.++.+..+ ....|+-++.... ++.|+|+|++|.||..... +..+....
T Consensus 72 ---lsY~~tdvfl~cfsv~~p~S~~n-v~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~ 146 (198)
T KOG0393|consen 72 ---LSYPQTDVFLLCFSVVSPESFEN-VKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE 146 (198)
T ss_pred ---cCCCCCCEEEEEEEcCChhhHHH-HHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence 25788899999999987765543 3345677766553 7899999999999985421 12334566
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+++..|...+++|||++..|+++.|+..+++...
T Consensus 147 lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 147 LAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 6776776789999999999999999999888765
No 233
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.63 E-value=9.3e-15 Score=124.74 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEe-----eCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMT-----KADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
++|+++|.+|||||||++++.+..+... .++.|.+......... .....+.+|||+|...+. . .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~------~----l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVK------S----T 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHH------H----H
Confidence 4799999999999999999998765432 1222222211111111 112467899999986431 1 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-------------------CCCCCcEEEEEeCCCCCCChh
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-------------------APPKQKRVLCMNKVDLVTKKK 274 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-------------------~~~~~p~ivV~NK~Dl~~~~~ 274 (322)
. -..+..+|++|+|||++++.+.. .+..|+..+... ...+.|+++|+||+|+.+.+.
T Consensus 71 ~--~~~yr~ad~iIlVyDvtn~~Sf~--~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 71 R--AVFYNQVNGIILVHDLTNRKSSQ--NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred H--HHHhCcCCEEEEEEECcChHHHH--HHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 1 13478899999999998764443 455676665431 124689999999999976432
Q ss_pred H----HHHHHHHHhcCCCCCcEEEeecCCCC
Q 020714 275 D----LLKVAEQFKHLPGYERIFMTSGLKGA 301 (322)
Q Consensus 275 ~----~~~~~~~~~~~~~~~~~~~iSa~~g~ 301 (322)
. .......+++..+.+ .++.+|+.+.
T Consensus 147 ~~~~~~~~~~~~ia~~~~~~-~i~~~c~~~~ 176 (202)
T cd04102 147 SSGNLVLTARGFVAEQGNAE-EINLNCTNGR 176 (202)
T ss_pred cchHHHhhHhhhHHHhcCCc-eEEEecCCcc
Confidence 1 112234456666664 6777887554
No 234
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5e-15 Score=120.45 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=112.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.....+|+++|-.|+||||++..|...++..+.++.|...... ...+..+.+||..|+....+..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v----~ykn~~f~vWDvGGq~k~R~lW----------- 78 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETV----EYKNISFTVWDVGGQEKLRPLW----------- 78 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEE----EEcceEEEEEecCCCcccccch-----------
Confidence 3456889999999999999999998887776655555544433 3568899999999996543321
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhH--HHHHH--HHHhcCCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVA--EQFKHLPGYE 290 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~~--~~~~~~~~~~ 290 (322)
..++.+.+++|+|+|.+++....+ ..+.+.. +......+.|+++.+||.|+...-.. +.+.. ..+....+
T Consensus 79 -~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w-- 153 (181)
T KOG0070|consen 79 -KHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW-- 153 (181)
T ss_pred -hhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc--
Confidence 135688899999999977543322 3333333 33333457899999999999865321 11111 11112111
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.+..|+|.+|+|+.|.++|+...+...
T Consensus 154 ~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 154 HIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EEeeccccccccHHHHHHHHHHHHhcc
Confidence 478899999999999999999988653
No 235
>PRK12288 GTPase RsgA; Reviewed
Probab=99.62 E-value=1.6e-15 Score=139.26 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=103.8
Q ss_pred cccCCCCCC-CCCCCCCCCC---ChhhHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020714 53 SYFRIPTID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEE 127 (322)
Q Consensus 53 ~da~~p~~~-~~k~dl~~~~---~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (322)
.+..+|.+. .||+||.+.. ....|..+|...+..+++.++ ++.|...+. ..+..
T Consensus 147 ~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~--------------~~L~~------- 205 (347)
T PRK12288 147 ETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELE--------------AALTG------- 205 (347)
T ss_pred HhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHH--------------HHHhh-------
Confidence 344455555 5999998754 357788888888888999998 788877661 11111
Q ss_pred HHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-------ceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 128 ~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
..++|+|.||||||||||+|++.....++..++ ||+......+..+ ..|+||||+..+
T Consensus 206 ------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 206 ------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred ------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 127899999999999999999876655554442 5555444333222 379999999987
Q ss_pred CCC-CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 201 KSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
... ...+.+...|.........|. |.-+.|..++.+.+...++.
T Consensus 271 ~l~~~~~~~l~~~F~ei~~~~~~Cr-----F~dC~H~~EpgCaV~~Av~~ 315 (347)
T PRK12288 271 GLWHLEPEQVTQGFVEFRDYLGTCK-----FRDCKHDDDPGCALREAVEE 315 (347)
T ss_pred cCCCCCHHHHHHhhHHHHHHhcCCC-----CCCCccCCCCCChHHHHHHc
Confidence 653 344555566665555445544 44456667888877766653
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.62 E-value=7.6e-15 Score=137.98 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=108.4
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCee-------e--------eecCCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKV-------A--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~-------~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 199 (322)
.....++|+++|.+++|||||+++|++... . ......|.|.+.....+...+..+.|+||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 345678999999999999999999986210 0 1112456777765554555677899999999752
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE-EEEeCCCCCCChhHH--
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKDL-- 276 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i-vV~NK~Dl~~~~~~~-- 276 (322)
....+...+..+|++++|+|+..+...+......++...+ .|.+ +++||+|+.......
T Consensus 88 ------------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g------~p~iiVvvNK~D~~~~~~~~~~ 149 (396)
T PRK00049 88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred ------------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC------CCEEEEEEeecCCcchHHHHHH
Confidence 2344455678899999999998765555444555554433 4565 689999997532222
Q ss_pred -H-HHHHHHhcC---CCCCcEEEeecCCCC----------CHHHHHHHHHHHhh
Q 020714 277 -L-KVAEQFKHL---PGYERIFMTSGLKGA----------GLKALTQYLMEQFK 315 (322)
Q Consensus 277 -~-~~~~~~~~~---~~~~~~~~iSa~~g~----------gi~el~~~i~~~l~ 315 (322)
. +....+... ....+++++||++|. |+..|++.|...+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 1 222222221 122479999999986 67888888887653
No 237
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=9.2e-15 Score=138.85 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=106.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC------eee---------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
.+..++|+++|..++|||||+++|.+. ... ......|.|.+.....+...+..+.|+||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 356789999999999999999999731 100 11223677877766666666778999999998632
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHHH-
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK- 278 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~~- 278 (322)
+..+...+..+|++++|+|+..+...++.....++..++ +| +|+|+||+|+.......+.
T Consensus 138 ------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g------ip~iIvviNKiDlv~~~~~~~~i 199 (447)
T PLN03127 138 ------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG------VPSLVVFLNKVDVVDDEELLELV 199 (447)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEEEeeccCCHHHHHHHH
Confidence 333334455689999999997766555555555555443 45 5789999999864322221
Q ss_pred --HHHHHhcCCC----CCcEEEeecC---CCCC-------HHHHHHHHHHHhh
Q 020714 279 --VAEQFKHLPG----YERIFMTSGL---KGAG-------LKALTQYLMEQFK 315 (322)
Q Consensus 279 --~~~~~~~~~~----~~~~~~iSa~---~g~g-------i~el~~~i~~~l~ 315 (322)
....+....+ ..+++++||. +|.| +.+|+++|...+.
T Consensus 200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1222222111 2468888876 5555 7889999888764
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.62 E-value=6.8e-15 Score=138.74 Aligned_cols=149 Identities=18% Similarity=0.291 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe--eee------------------------------ecCCCCceeeeEEEEEeeCCc
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK--VAA------------------------------VSRKTNTTTHEVLGVMTKADT 187 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~--~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 187 (322)
++|+++|..++|||||+++|+... ... ....-|.|.+.....+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999986321 000 011124556655555656677
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
.+.|+||||+..+ ...+...+..+|++++|+|+..+...+......++..++. .++++|+||+
T Consensus 81 ~~~liDtPGh~~f------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~-----~~iivviNK~ 143 (406)
T TIGR02034 81 KFIVADTPGHEQY------------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGI-----RHVVLAVNKM 143 (406)
T ss_pred EEEEEeCCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCC-----CcEEEEEEec
Confidence 8999999997532 2233345678899999999987766655555555555542 2489999999
Q ss_pred CCCCChh-HHHHHHHH---HhcCCCC--CcEEEeecCCCCCHHH
Q 020714 268 DLVTKKK-DLLKVAEQ---FKHLPGY--ERIFMTSGLKGAGLKA 305 (322)
Q Consensus 268 Dl~~~~~-~~~~~~~~---~~~~~~~--~~~~~iSa~~g~gi~e 305 (322)
|+..... ..+..... +....++ .+++++||++|+|+++
T Consensus 144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9975332 22222222 2222222 3699999999999986
No 239
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.61 E-value=4.8e-15 Score=115.39 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=107.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
...+.++|-.++|||||+|.+..+... ...+.|+......+..++..+.+||.||+.. ++..|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~r-------------frsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------------FRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCcc-------------HHHHHH
Confidence 466899999999999999987664332 1222233333344557788899999999875 445555
Q ss_pred h-cccccEEEEEEeCCCCCCCcH--HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh--cC-CCCCcE
Q 020714 219 A-VNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PGYERI 292 (322)
Q Consensus 219 ~-~~~ad~ii~v~D~s~~~~~~~--~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~ 292 (322)
. ++.+++++|++|++++..-.. .++..++ ........|+++.+||.|+..+-... ....++. .. .....+
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL---~k~~l~gip~LVLGnK~d~~~AL~~~-~li~rmgL~sitdREvcC 159 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLL---DKPSLTGIPLLVLGNKIDLPGALSKI-ALIERMGLSSITDREVCC 159 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHh---cchhhcCCcEEEecccccCcccccHH-HHHHHhCccccccceEEE
Confidence 4 588999999999987433222 1333333 33444578899999999998764322 2222221 11 122358
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
|.+||++..||+.+.+||+++-..
T Consensus 160 ~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHhhh
Confidence 999999999999999999988654
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.61 E-value=1.2e-14 Score=139.22 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=100.7
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeee--e------------ec------------------CCCCceeeeEEEEE
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVA--A------------VS------------------RKTNTTTHEVLGVM 182 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~--~------------~~------------------~~~~~t~~~~~~~~ 182 (322)
..+..++|+++|.+++|||||+++|+...-. . .+ ..-|.|.+.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3456799999999999999999998743110 0 01 01234455544445
Q ss_pred eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (322)
Q Consensus 183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv 262 (322)
...+..+.|+||||+..+ ...+...+..+|++++|+|+..+...+......++..++. .++++
T Consensus 103 ~~~~~~i~~iDTPGh~~f------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~-----~~iIv 165 (474)
T PRK05124 103 STEKRKFIIADTPGHEQY------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGI-----KHLVV 165 (474)
T ss_pred ccCCcEEEEEECCCcHHH------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCC-----CceEE
Confidence 566778999999996422 2233344688899999999987765554444445555442 35899
Q ss_pred EEeCCCCCCChh-HHHHHHHHH---hcCC---CCCcEEEeecCCCCCHHHH
Q 020714 263 CMNKVDLVTKKK-DLLKVAEQF---KHLP---GYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 263 V~NK~Dl~~~~~-~~~~~~~~~---~~~~---~~~~~~~iSa~~g~gi~el 306 (322)
|+||+|+..... ........+ .... ...+++++||++|+|++++
T Consensus 166 vvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 166 AVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 999999975322 222222222 2222 2357999999999999864
No 241
>PRK10218 GTP-binding protein; Provisional
Probab=99.61 E-value=2.7e-14 Score=139.79 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC--eeee-------------ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAA-------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~--~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
...+|+++|..++|||||+++|+.. .+.. .....|.|.......+...+..+.+|||||...+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3467999999999999999999852 1111 112345565555555666788999999999875421
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHHHH
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVA 280 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~~ 280 (322)
.+...+..+|++++|+|+..+...+...+...+.. . +.|.++|+||+|+.... ....+..
T Consensus 84 ------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~---~---gip~IVviNKiD~~~a~~~~vl~ei~ 145 (607)
T PRK10218 84 ------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA---Y---GLKPIVVINKVDRPGARPDWVVDQVF 145 (607)
T ss_pred ------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH---c---CCCEEEEEECcCCCCCchhHHHHHHH
Confidence 12234678899999999977644433333333322 2 46789999999987543 2333334
Q ss_pred HHHhcCC-----CCCcEEEeecCCCC----------CHHHHHHHHHHHhhh
Q 020714 281 EQFKHLP-----GYERIFMTSGLKGA----------GLKALTQYLMEQFKD 316 (322)
Q Consensus 281 ~~~~~~~-----~~~~~~~iSa~~g~----------gi~el~~~i~~~l~~ 316 (322)
..+.... ...|++++||++|. |+..|++.|.+.+..
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 4432211 12369999999998 689999999988764
No 242
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.61 E-value=1.8e-14 Score=141.03 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=95.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe------------------eCCccEEEEeCCCcc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT------------------KADTQICIFDTPGLM 198 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~l~DtpG~~ 198 (322)
.+++.|+++|.+|+|||||+|+|.+....... ..+.|.+.-..... ..-..+.||||||+.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~-~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE-AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCC-CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46778999999999999999999876433211 11111110000000 000137899999987
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh----
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---- 274 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---- 274 (322)
.+.. . ....+..+|++++|+|++++...+.......+.. .+.|+++++||+|+...-.
T Consensus 83 ~f~~------~------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~------~~vpiIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 83 AFTN------L------RKRGGALADIAILVVDINEGFQPQTIEAINILKR------RKTPFVVAANKIDRIPGWKSTED 144 (586)
T ss_pred HHHH------H------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCchhhhhhcC
Confidence 5421 1 1123567899999999987543333333333322 2567999999999853100
Q ss_pred ----------------HH----HHHHHHHh-------------cCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 275 ----------------DL----LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 275 ----------------~~----~~~~~~~~-------------~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.. .+....+. +..+..+++++||++|+|+++|++.+....
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 00111111 122345799999999999999999886533
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.60 E-value=1.6e-14 Score=143.65 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=99.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeee----------cCC----------------------CCceeeeEEEEEe
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV----------SRK----------------------TNTTTHEVLGVMT 183 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~----------~~~----------------------~~~t~~~~~~~~~ 183 (322)
.+..++|+++|.+|+|||||+|+|+...-... +.. .|.|.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568899999999999999999885321111 011 2444554444555
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..+.|+||||+..+ .......+..+|++++|+|+..+...+......++..++. .++++|
T Consensus 101 ~~~~~~~liDtPG~~~f------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~-----~~iivv 163 (632)
T PRK05506 101 TPKRKFIVADTPGHEQY------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGI-----RHVVLA 163 (632)
T ss_pred cCCceEEEEECCChHHH------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCC-----CeEEEE
Confidence 66778999999997532 2223345678899999999987765555445555555442 358899
Q ss_pred EeCCCCCCCh-hHHHHHHHH---HhcCCCC--CcEEEeecCCCCCHHH
Q 020714 264 MNKVDLVTKK-KDLLKVAEQ---FKHLPGY--ERIFMTSGLKGAGLKA 305 (322)
Q Consensus 264 ~NK~Dl~~~~-~~~~~~~~~---~~~~~~~--~~~~~iSa~~g~gi~e 305 (322)
+||+|+.... ......... +....++ .+++++||++|.|+++
T Consensus 164 vNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9999997522 222222222 2222233 3599999999999984
No 244
>PTZ00099 rab6; Provisional
Probab=99.60 E-value=9e-15 Score=122.38 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=81.0
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
...+.||||||...+... .-..+..+|++|+|||++++.+. ..+..|+..+.....++.|+++|+|
T Consensus 28 ~v~l~iwDt~G~e~~~~~------------~~~~~~~ad~~ilv~D~t~~~sf--~~~~~w~~~i~~~~~~~~piilVgN 93 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSL------------IPSYIRDSAAAIVVYDITNRQSF--ENTTKWIQDILNERGKDVIIALVGN 93 (176)
T ss_pred EEEEEEEECCChHHhhhc------------cHHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 457889999998754321 11246889999999999765433 2344566655433335688999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
|+|+.............+...++. .+++|||++|.||+++|++|.+.+.+
T Consensus 94 K~DL~~~~~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 94 KTDLGDLRKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CcccccccCCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999975332222233344444444 48999999999999999999999865
No 245
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.60 E-value=2.3e-14 Score=140.37 Aligned_cols=157 Identities=17% Similarity=0.250 Sum_probs=105.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCC--eeee-------------ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT--KVAA-------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS 205 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~--~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 205 (322)
+|+++|..++|||||+++|+.. .+.. .....|.|.......+...+..+.||||||+..|.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 6999999999999999999742 1111 11123555555555566778899999999986431
Q ss_pred hhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHHHHHHH
Q 020714 206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQF 283 (322)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~~~~~ 283 (322)
......+..+|++++|+|+..+...+... ++..+... +.|.++|+||+|+.... ....+....+
T Consensus 79 --------~ev~~~l~~aD~alLVVDa~~G~~~qT~~---~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~ 144 (594)
T TIGR01394 79 --------GEVERVLGMVDGVLLLVDASEGPMPQTRF---VLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLF 144 (594)
T ss_pred --------HHHHHHHHhCCEEEEEEeCCCCCcHHHHH---HHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHH
Confidence 12234467789999999997654333333 33333322 46799999999996543 2233333333
Q ss_pred hc------CCCCCcEEEeecCCCC----------CHHHHHHHHHHHhhh
Q 020714 284 KH------LPGYERIFMTSGLKGA----------GLKALTQYLMEQFKD 316 (322)
Q Consensus 284 ~~------~~~~~~~~~iSa~~g~----------gi~el~~~i~~~l~~ 316 (322)
.. ...+ +++++||++|. |++.|++.|.+.+..
T Consensus 145 ~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 145 AELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 21 1123 69999999996 899999999998764
No 246
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=1.1e-15 Score=134.86 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=100.3
Q ss_pred CCCCCCCCCChh--hHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCc
Q 020714 63 PQNNNAAKKQEP--TWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS 139 (322)
Q Consensus 63 ~k~dl~~~~~~~--~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 139 (322)
||+||.+.+... ++...|.+.++.+++.++ ++.+...+ ...+. +
T Consensus 118 nK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l--------------~~~l~-------------------~ 164 (301)
T COG1162 118 NKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL--------------AELLA-------------------G 164 (301)
T ss_pred EccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHH--------------HHHhc-------------------C
Confidence 899999887777 699999999999999998 77777766 12221 2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe---eeeecCCC----CceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK---VAAVSRKT----NTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKV 211 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~---~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~ 211 (322)
-..+++|++|||||||+|+|.+.. +..++... +||+......+..+| .++|||||..+.- ....+.+..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~ 241 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQ 241 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHH
Confidence 247899999999999999998743 22333333 455555544343345 9999999998775 455566666
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (322)
Q Consensus 212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~ 248 (322)
.|.........|. |.-+.|..++.+.+...++
T Consensus 242 ~F~ef~~~~~~Ck-----Fr~C~H~~EPgCav~~av~ 273 (301)
T COG1162 242 AFPEFAELARQCK-----FRDCTHTHEPGCAVKAAVE 273 (301)
T ss_pred HhHHHHHHhcCCC-----CCCCCCCCCCCcHHHHHHH
Confidence 6666655555443 4445666777776666554
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=3.5e-14 Score=135.65 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=96.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCee---------------eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV---------------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
.+..++|+++|.+++|||||+++|+.... .......|.|.+.....+...+..+.|+||||+..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 35678999999999999999999985210 011223456666555555566788999999998642
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHHH-
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK- 278 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~~- 278 (322)
+..++..+..+|++++|+|+..+...+.......+..++ +| +++++||+|+.......+.
T Consensus 158 ------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 158 ------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG------VPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEecccccCHHHHHHHH
Confidence 344455667889999999998765444434444444333 45 7889999999764322221
Q ss_pred --HHHHHhcCC----CCCcEEEeecCCCC
Q 020714 279 --VAEQFKHLP----GYERIFMTSGLKGA 301 (322)
Q Consensus 279 --~~~~~~~~~----~~~~~~~iSa~~g~ 301 (322)
....+.... ...+++++||.+|.
T Consensus 220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 220 ELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 222222222 13479999999885
No 248
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.58 E-value=3.4e-14 Score=126.59 Aligned_cols=141 Identities=19% Similarity=0.204 Sum_probs=91.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCC-----eeeee------------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT-----KVAAV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~-----~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 203 (322)
+|+++|.+|+|||||+|+|+.. +...+ ....|.|.+.....+...+..+.++||||...+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 4899999999999999998631 11111 123356666666666677889999999997642
Q ss_pred CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHH
Q 020714 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ 282 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~ 282 (322)
...+...+..+|++++|+|+..+...+...+...+.. . ++|+++++||+|+.... .........
T Consensus 78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~---~---~~p~ivviNK~D~~~a~~~~~~~~l~~ 142 (270)
T cd01886 78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR---Y---NVPRIAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 1233455677799999999987654444444443333 2 36799999999997532 222233333
Q ss_pred HhcCCCCCcEEEeecCC
Q 020714 283 FKHLPGYERIFMTSGLK 299 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~ 299 (322)
......++.++++|+..
T Consensus 143 ~l~~~~~~~~~Pisa~~ 159 (270)
T cd01886 143 KLGANPVPLQLPIGEED 159 (270)
T ss_pred HhCCCceEEEeccccCC
Confidence 33344455568888763
No 249
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.58 E-value=3.4e-14 Score=121.71 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=92.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
+|+++|++|||||||+++|....+.... +.++......... ..+..+.+|||||+..+ . .....
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---------~---~~~~~ 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--TSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---------R---DKLLE 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc--CcEeecceEEEeecCCCCceEEEEECCCCHHH---------H---HHHHH
Confidence 5899999999999999999987543221 1111111111111 13567899999998632 1 11223
Q ss_pred hcccc-cEEEEEEeCCCCCCCcHHHHHHHHHHhcc---cCCCCCcEEEEEeCCCCCCChh------HHHHHHHHHh----
Q 020714 219 AVNLF-EVLMVVFDVHRHLTSPDSRVIRLIERMGK---QAPPKQKRVLCMNKVDLVTKKK------DLLKVAEQFK---- 284 (322)
Q Consensus 219 ~~~~a-d~ii~v~D~s~~~~~~~~~~~~~l~~~~~---~~~~~~p~ivV~NK~Dl~~~~~------~~~~~~~~~~---- 284 (322)
.+..+ +++|+|+|+.... ........++..+.. ...+..|+++|+||+|+..... .++.++..+.
T Consensus 68 ~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~ 146 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRS 146 (203)
T ss_pred HHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 45666 9999999997642 111223333322211 1124688999999999875421 1111111100
Q ss_pred ---------------------------cCCCCCcEEEeecCCCC-CHHHHHHHHHH
Q 020714 285 ---------------------------HLPGYERIFMTSGLKGA-GLKALTQYLME 312 (322)
Q Consensus 285 ---------------------------~~~~~~~~~~iSa~~g~-gi~el~~~i~~ 312 (322)
.......++++|++.+. |++.+.+||.+
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 147 KSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00111247889998876 69999999875
No 250
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.58 E-value=2.7e-15 Score=117.05 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=71.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeee---eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
||+|+|.+||||||||++|.+.... ......+.+..............+.+||++|...+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------------ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ------------ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc------------
Confidence 6899999999999999999987755 1122222332222222222233588999999864322111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVD 268 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~D 268 (322)
..+..+|++++|||.++..+.... .+..++..+.... .+.|+++|+||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 115667999999999765433331 3455666666432 3489999999998
No 251
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=9e-14 Score=122.24 Aligned_cols=138 Identities=21% Similarity=0.212 Sum_probs=90.5
Q ss_pred hhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHH
Q 020714 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVK 210 (322)
Q Consensus 132 ~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~ 210 (322)
.++.....++|+++|.+|||||||+|+|++.....++...++|...........+..+.++||||+..... ........
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHH
Confidence 34556678999999999999999999999988777776666676666555556788899999999985421 01111111
Q ss_pred HHHHHHHhhcccccEEEEEEeCCC-CCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCC
Q 020714 211 VRVESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 211 ~~~~~~~~~~~~ad~ii~v~D~s~-~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
..+.+.+. -...|++++|..++. +....+..+...+.. ++.. . -.++++|+||+|...+
T Consensus 104 ~~I~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-i-~~~~ivV~T~~d~~~p 164 (249)
T cd01853 104 SSIKRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-I-WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh-h-HhCEEEEEeCCccCCC
Confidence 12222221 135688888876643 233444455555555 3321 1 1459999999999754
No 252
>PLN00023 GTP-binding protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=129.47 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=88.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEee-------------CCccEEEEeCCCcccCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTK-------------ADTQICIFDTPGLMLNK 201 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~-------------~~~~~~l~DtpG~~~~~ 201 (322)
....+||+++|..|||||||++++.+..+.. ...+.|.+.......+.. ....+.||||+|...+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 3456899999999999999999999875432 222333332211111110 12458899999987542
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC------------CCCCcEEEEEeCCCC
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA------------PPKQKRVLCMNKVDL 269 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~------------~~~~p~ivV~NK~Dl 269 (322)
. +.. ..+..+|++|+|||+++..+. ..+..|+..+.... ..++|+++|+||+|+
T Consensus 98 s----------L~~--~yyr~AdgiILVyDITdr~SF--enL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 98 D----------CRS--LFYSQINGVIFVHDLSQRRTK--TSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred h----------hhH--HhccCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 2 111 247889999999999774433 34556666665321 124789999999999
Q ss_pred CCCh---h---HHHHHHHHHhcCCCC
Q 020714 270 VTKK---K---DLLKVAEQFKHLPGY 289 (322)
Q Consensus 270 ~~~~---~---~~~~~~~~~~~~~~~ 289 (322)
.... . +..+..+.+++.+++
T Consensus 164 ~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 164 APKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccccHHHHHHHHHHcCC
Confidence 6542 1 234566666665554
No 253
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.57 E-value=3.8e-14 Score=122.33 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=90.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeee------------------cCCCCceeeeEEEEEe-----eCCccEEEEeCCCc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------SRKTNTTTHEVLGVMT-----KADTQICIFDTPGL 197 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~------------------~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~ 197 (322)
+|+++|.+|+|||||+++|+....... ....+.+.......+. .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 489999999999999999986432111 0011222221111111 12357899999998
Q ss_pred ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----
Q 020714 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK----- 272 (322)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~----- 272 (322)
..+. ..+...+..+|++++|+|+..+...... .++...... +.|+++|+||+|+...
T Consensus 82 ~~f~------------~~~~~~~~~aD~~llVvD~~~~~~~~~~---~~~~~~~~~---~~p~iiviNK~D~~~~~~~l~ 143 (213)
T cd04167 82 VNFM------------DEVAAALRLSDGVVLVVDVVEGVTSNTE---RLIRHAILE---GLPIVLVINKIDRLILELKLP 143 (213)
T ss_pred cchH------------HHHHHHHHhCCEEEEEEECCCCCCHHHH---HHHHHHHHc---CCCEEEEEECcccCcccccCC
Confidence 7531 1233456678999999999765443322 222332222 3679999999998621
Q ss_pred -hh---HHHH---HHHHHhcCCCC----------CcEEEeecCCCCCHH--------HHHHHHHHHh
Q 020714 273 -KK---DLLK---VAEQFKHLPGY----------ERIFMTSGLKGAGLK--------ALTQYLMEQF 314 (322)
Q Consensus 273 -~~---~~~~---~~~~~~~~~~~----------~~~~~iSa~~g~gi~--------el~~~i~~~l 314 (322)
.+ ...+ ....+....+. .++++.|++.|+++. +|++.|.+.+
T Consensus 144 ~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 144 PNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 11 1111 11112211111 238899999999887 7777766554
No 254
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3e-14 Score=132.72 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=109.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--------------eeeecCCCCceeeeEEEEEeeCC---ccEEEEeCCCcccC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--------------VAAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLN 200 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~ 200 (322)
+.-++.|+-.-.-|||||..+|+... -.++...-|.|...+...+.+.+ ..+.++||||+.+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 34568888888999999999987421 11233445777766666555544 67889999999987
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHH
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKV 279 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~ 279 (322)
....+ ..+..||++++|+|++.+...+ .+......+.. +..+|.|+||+|+...+. ..+..
T Consensus 139 s~EVs------------Rslaac~G~lLvVDA~qGvqAQ--T~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q 200 (650)
T KOG0462|consen 139 SGEVS------------RSLAACDGALLVVDASQGVQAQ--TVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQ 200 (650)
T ss_pred cceeh------------ehhhhcCceEEEEEcCcCchHH--HHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHH
Confidence 54222 3456789999999998765333 33333333332 234999999999987542 22222
Q ss_pred HHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 280 AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 280 ~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
...+....+ .+++.+|||+|.|+++++++|++.+..-
T Consensus 201 ~~~lF~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 201 LFELFDIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHhcCCc-cceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 333333333 3699999999999999999999988753
No 255
>PTZ00258 GTP-binding protein; Provisional
Probab=99.56 E-value=1.2e-13 Score=127.84 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=71.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-----------------CccEEEEeCCCcc
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLM 198 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~DtpG~~ 198 (322)
....++|+++|.||||||||+|+|++.. ..+++.|++|.....+.+... ...+.++||||+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3567899999999999999999998876 478888999988887775443 2348999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s 233 (322)
..... ....-.+++..++.+|++++|+|+.
T Consensus 97 ~ga~~-----g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASE-----GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcc-----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 54321 1122346677789999999999984
No 256
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=9.4e-14 Score=130.08 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=109.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---CCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
.+++-|.++|.--.|||||+..+.+..++. +...|.|-+.-...... ....++|+||||+.-|. .++.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt------~mRa-- 73 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT------AMRA-- 73 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH------HHHh--
Confidence 467789999999999999999998877653 33344444432222322 35789999999986432 1111
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh-------cC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-------HL 286 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~-------~~ 286 (322)
.-..-+|.+++|+|+.++...+.......++. .+.|+++++||+|..... ......++. .+
T Consensus 74 ----RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~------a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~ 141 (509)
T COG0532 74 ----RGASVTDIAILVVAADDGVMPQTIEAINHAKA------AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEW 141 (509)
T ss_pred ----cCCccccEEEEEEEccCCcchhHHHHHHHHHH------CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhc
Confidence 23467799999999988765444333233332 357899999999998643 222222221 23
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
.+...++++||++|+|+++|++.|.-......++
T Consensus 142 gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elk 175 (509)
T COG0532 142 GGDVIFVPVSAKTGEGIDELLELILLLAEVLELK 175 (509)
T ss_pred CCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhh
Confidence 3445789999999999999999998766554443
No 257
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=132.93 Aligned_cols=176 Identities=16% Similarity=0.213 Sum_probs=120.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.+....++++|+||||||||+|.++...+ .+.+.+.||.....+.+...-..++++||||+.......- ..+.-....
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdr-N~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDR-NIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhh-hHHHHHHHH
Confidence 55677899999999999999999887653 4667778888877776666666789999999975332111 111111112
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcCCCCCcE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPGYERI 292 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 292 (322)
++..++ .+|+|+.|.|..++-.-.....+...++.. ..++|+|+|+||+|+...... -.+....+.+. +..++
T Consensus 243 ALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~v~v 318 (620)
T KOG1490|consen 243 ALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GNVKV 318 (620)
T ss_pred HHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhc-cCceE
Confidence 223332 578999999887766655444555555532 346889999999999876432 22333444443 33469
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+.+|+.+-+|+.++....++.+...
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHH
Confidence 9999999999999888888777654
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.55 E-value=8.8e-14 Score=132.36 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=96.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC--eee----------------------------eecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA----------------------------AVSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~----------------------------~~~~~~~~t~~~~~~~~~~~~ 186 (322)
+..++|+++|..++|||||+.+|+.. ... ......|.|.+.....+...+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45689999999999999999988641 000 011223566665555566667
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCc
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (322)
..+.|+||||+..| ...+...+..+|++++|+|+..+.. .+......++..++.. .
T Consensus 85 ~~i~lIDtPGh~~f------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~-----~ 147 (446)
T PTZ00141 85 YYFTIIDAPGHRDF------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK-----Q 147 (446)
T ss_pred eEEEEEECCChHHH------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC-----e
Confidence 88999999997632 3444556778999999999977642 2333444444444421 2
Q ss_pred EEEEEeCCCCCC---ChhHHHH----HHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714 260 RVLCMNKVDLVT---KKKDLLK----VAEQFKHLPGY----ERIFMTSGLKGAGLKA 305 (322)
Q Consensus 260 ~ivV~NK~Dl~~---~~~~~~~----~~~~~~~~~~~----~~~~~iSa~~g~gi~e 305 (322)
+|+++||+|... .....+. ....+.. .++ .+++++||.+|+|+.+
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~-~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKEVSAYLKK-VGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHHHHHHHHh-cCCCcccceEEEeecccCCCccc
Confidence 789999999532 1122222 2222222 222 4699999999999964
No 259
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.54 E-value=6.1e-14 Score=126.25 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=111.2
Q ss_pred CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhh
Q 020714 44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIF 101 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~ 101 (322)
..+|.++-+.|++-|.++ . ||+||.+......|..++...+..+++.++ ++.+...+.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 378988888888877632 1 899998775556788888778888888888 777766551
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCCce
Q 020714 102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTT 174 (322)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~~t 174 (322)
.. + ....++++|++|||||||||.|++.....++. ..++|
T Consensus 157 --------------~~----L---------------~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT 203 (287)
T cd01854 157 --------------EY----L---------------KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTT 203 (287)
T ss_pred --------------hh----h---------------ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCccc
Confidence 11 1 01358999999999999999999865443322 22355
Q ss_pred eeeEEEEEeeCCccEEEEeCCCcccCC-CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 175 THEVLGVMTKADTQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
+......+.. ...++||||+..+. ...........|.........|. |.-+.|..++.+.+...++.
T Consensus 204 ~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~-----F~~C~H~~Ep~Cav~~av~~ 271 (287)
T cd01854 204 THRELFPLPG---GGLLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCK-----FRDCTHTNEPGCAVKAAVEA 271 (287)
T ss_pred ceEEEEEcCC---CCEEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCC-----CCCCcCCCCCCCHHHHHHHc
Confidence 5554432221 23899999998765 44555666666666655555554 43345667888887776653
No 260
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.54 E-value=1.8e-13 Score=124.48 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=92.5
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCcee-----------------eeEEEE----------
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-----------------HEVLGV---------- 181 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t~-----------------~~~~~~---------- 181 (322)
...+++.|+|+|+||+|||||++.|.. .++..+...|.... +.....
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~ 131 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLG 131 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCccccc
Confidence 345788999999999999999998642 23333222221110 000000
Q ss_pred ------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 182 ------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 182 ------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
+...+.++.|+||+|...... .....+|+++++.+...+ ........-.
T Consensus 132 ~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---------------~i~~~aD~vlvv~~p~~g--d~iq~~k~gi-- 192 (332)
T PRK09435 132 GVARKTRETMLLCEAAGYDVILVETVGVGQSET---------------AVAGMVDFFLLLQLPGAG--DELQGIKKGI-- 192 (332)
T ss_pred chHHHHHHHHHHHhccCCCEEEEECCCCccchh---------------HHHHhCCEEEEEecCCch--HHHHHHHhhh--
Confidence 112357899999999974211 023458999999764221 1111111111
Q ss_pred hcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 250 MGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 250 ~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+. ...++|+||+|+..... ...+....+... .+.++++.+||++|.|+++|+++|.+++.
T Consensus 193 ~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 193 ME------LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hh------hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11 12589999999986432 111222222211 13368999999999999999999999865
No 261
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.54 E-value=2.2e-13 Score=117.84 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=70.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeec---------------CCCCceeeeEEE--EEee--------CCccEEEEeCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLG--VMTK--------ADTQICIFDTP 195 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~---------------~~~~~t~~~~~~--~~~~--------~~~~~~l~Dtp 195 (322)
+|+++|..++|||||+++|+...-.... ..-|.|...... .+.. .+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999998743211000 011222221111 1211 15678899999
Q ss_pred CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
|+..+. ..+...+..+|++++|+|+..+...+...+...... . +.|+++|+||+|+.
T Consensus 82 G~~~f~------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~---~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK---E---RVKPVLVINKIDRL 138 (222)
T ss_pred CccccH------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEECCCcc
Confidence 998542 233455678899999999987655544333332222 2 35799999999986
No 262
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.54 E-value=6.3e-14 Score=124.30 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=105.1
Q ss_pred HHHHHHHHhhHHHHHHhhh--hccCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceeeeEEEEEeeCCcc
Q 020714 116 ALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVMTKADTQ 188 (322)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~~--~~~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~ 188 (322)
.+.+..++.++.....+|. ...+.+.+.|+|.||+|||||++.+++. ....+....++..+... +...+.+
T Consensus 79 ~~~~~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r--I~~~g~p 156 (290)
T PRK10463 79 EVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR--IRATGTP 156 (290)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH--HHhcCCc
Confidence 4455566666666665554 3456889999999999999999877643 22333333333222111 1122334
Q ss_pred EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHH----H--------HHhcccCC
Q 020714 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRL----I--------ERMGKQAP 255 (322)
Q Consensus 189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~----l--------~~~~~~~~ 255 (322)
+..+.|.+.. .....++..++..+...+.-+++++.......+.. .+... + +.++....
T Consensus 157 vvqi~tG~~C--------hl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~ 228 (290)
T PRK10463 157 AIQVNTGKGC--------HLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHM 228 (290)
T ss_pred EEEecCCCCC--------cCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccch
Confidence 4444444433 11233444555554444333444444321100000 00000 0 00000011
Q ss_pred CCCcEEEEEeCCCCCCC-hhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 256 PKQKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 256 ~~~p~ivV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
-....++|+||+|+.+. ..+.+.....+...++..+++++||++|+|+++|.+||...
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 12457999999999864 23566667777777777889999999999999999999874
No 263
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.6e-14 Score=114.52 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=109.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC----CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
+..+.|+++|..|+|||||+.++........+. ...+|.....+.+...+..+.+||..|+..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~------------- 81 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES------------- 81 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH-------------
Confidence 345789999999999999999876543221111 122344444444555688899999999852
Q ss_pred HHHHHh-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH--HHHHHHHhcCC
Q 020714 213 VESAWS-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL--LKVAEQFKHLP 287 (322)
Q Consensus 213 ~~~~~~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~--~~~~~~~~~~~ 287 (322)
.++.|. ++..|++++++||++++...++. .+..+++.-.. .+.|+++.+||.|+....+.. ...... ++..
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l---eg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~ 157 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL---EGAPVLVLANKQDLQNAMEAAELDGVFGL-AELI 157 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh---cCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhc
Confidence 333343 35778999999999775444433 33333333333 368899999999997653321 111111 1221
Q ss_pred --CCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 288 --GYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 288 --~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
...++.+|||.+|+||++-..|++..+.++
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 223689999999999999999999999887
No 264
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.53 E-value=1e-13 Score=113.70 Aligned_cols=125 Identities=27% Similarity=0.382 Sum_probs=87.0
Q ss_pred CCceEEEccccCCCCCC-C------------------CCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714 45 DCDSVFDSSYFRIPTID-D------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE 104 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-~------------------~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~ 104 (322)
.+|+++.+.|++.|... + ||+|+.+.+....|..+....+..+++.++ ++.|..++.
T Consensus 12 ~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~--- 88 (156)
T cd01859 12 ESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILR--- 88 (156)
T ss_pred hCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHH---
Confidence 47888888887776543 2 899987665556676555555566788888 888877662
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714 105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184 (322)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~ 184 (322)
..+...+ +......+++++|.+|||||||+|++.+.....+++.+|+|...... .
T Consensus 89 -----------~~l~~~~-----------~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~---~ 143 (156)
T cd01859 89 -----------RTIKELA-----------KIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV---K 143 (156)
T ss_pred -----------HHHHHHH-----------hhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE---E
Confidence 1111111 11234577899999999999999999987777778888877654422 2
Q ss_pred CCccEEEEeCCCc
Q 020714 185 ADTQICIFDTPGL 197 (322)
Q Consensus 185 ~~~~~~l~DtpG~ 197 (322)
.+..+.+|||||+
T Consensus 144 ~~~~~~~~DtpGi 156 (156)
T cd01859 144 ITSKIYLLDTPGV 156 (156)
T ss_pred cCCCEEEEECcCC
Confidence 2447899999996
No 265
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.4e-13 Score=128.19 Aligned_cols=165 Identities=21% Similarity=0.307 Sum_probs=113.5
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeE-EEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
..++++.|-++|.-.-|||||+.+|.+..++.. ...|.|.+.- ..+-...|..++|+||||..-| ..+++
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF------~aMRa-- 219 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF------SAMRA-- 219 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecCCCCEEEEecCCcHHHH------HHHHh--
Confidence 456889999999999999999999988776543 3334443311 1112236889999999997532 11111
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-------HhcC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-------FKHL 286 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-------~~~~ 286 (322)
.-...+|.+++|+.+.++...+. ++.+......++|+|+.+||||.+.. ..+...+. +.++
T Consensus 220 ----RGA~vtDIvVLVVAadDGVmpQT------~EaIkhAk~A~VpiVvAinKiDkp~a--~pekv~~eL~~~gi~~E~~ 287 (683)
T KOG1145|consen 220 ----RGANVTDIVVLVVAADDGVMPQT------LEAIKHAKSANVPIVVAINKIDKPGA--NPEKVKRELLSQGIVVEDL 287 (683)
T ss_pred ----ccCccccEEEEEEEccCCccHhH------HHHHHHHHhcCCCEEEEEeccCCCCC--CHHHHHHHHHHcCccHHHc
Confidence 23466799999999977654433 33333333446889999999997653 33333333 3455
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
.|..+++++||++|+|++.|-+++.-...-..++
T Consensus 288 GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLk 321 (683)
T KOG1145|consen 288 GGDVQVIPISALTGENLDLLEEAILLLAEVMDLK 321 (683)
T ss_pred CCceeEEEeecccCCChHHHHHHHHHHHHHhhcc
Confidence 6677899999999999999999998776655443
No 266
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.53 E-value=4.5e-14 Score=123.35 Aligned_cols=160 Identities=21% Similarity=0.291 Sum_probs=101.7
Q ss_pred hhhhccCceEEEEEcCCCCchhHHHHHHhC------Ceeee--ecCCCCceeeeEEE-----------------------
Q 020714 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAA--VSRKTNTTTHEVLG----------------------- 180 (322)
Q Consensus 132 ~~~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~--~~~~~~~t~~~~~~----------------------- 180 (322)
..+...+...|+|.|.||+|||||+..|.. .+++. +.+....|.....+
T Consensus 44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG 123 (323)
T COG1703 44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG 123 (323)
T ss_pred HhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc
Confidence 346677888999999999999999998752 23332 22222222111110
Q ss_pred --------------EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHH
Q 020714 181 --------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246 (322)
Q Consensus 181 --------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~ 246 (322)
.+.-.|+++.|+.|.|..+... .....+|.+++|.=... ...-+.++.-
T Consensus 124 ~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---------------~I~~~aDt~~~v~~pg~--GD~~Q~iK~G 186 (323)
T COG1703 124 TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---------------DIANMADTFLVVMIPGA--GDDLQGIKAG 186 (323)
T ss_pred cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---------------HHhhhcceEEEEecCCC--CcHHHHHHhh
Confidence 0122467899999999874311 22355688888875532 3333445555
Q ss_pred HHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-------HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-------FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 247 l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+.++. .|+|+||.|.............. .....+.++++.+||.+|+|+++|++.|.++..-
T Consensus 187 imEia--------Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 187 IMEIA--------DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred hhhhh--------heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 55555 79999999965543222221111 2233466789999999999999999999988654
No 267
>PRK12739 elongation factor G; Reviewed
Probab=99.52 E-value=1.8e-13 Score=137.20 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC-----eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
+..+|+++|.+|+|||||+|+|+.. ....+. ...|.|.+.....+...+..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4568999999999999999999642 111111 24467777666667778889999999998642
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
...+...+..+|++++|+|+..+...++..+...+... +.|.|+++||+|+...
T Consensus 87 ------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~------~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 ------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY------GVPRIVFVNKMDRIGA 140 (691)
T ss_pred ------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCC
Confidence 12344566778999999999877655554444444432 3579999999999853
No 268
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.52 E-value=2.5e-13 Score=131.38 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC--Cee---eeecC----------------CCCceeeeEEEEEeeCCccEEEEeCCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVSR----------------KTNTTTHEVLGVMTKADTQICIFDTPG 196 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~--~~~---~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~DtpG 196 (322)
+..+|+++|.+|+|||||+++|+. +.. ..+.. .-|.+.......+...+..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456899999999999999999863 111 11110 012222233333556678899999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+..+. ..++..+..+|++|+|+|+..+...+.. .++...... +.|+++++||+|+...
T Consensus 89 ~~df~------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~---~l~~~~~~~---~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDFS------------EDTYRTLTAVDSALMVIDAAKGVEPQTR---KLMEVCRLR---DTPIFTFINKLDRDGR 146 (526)
T ss_pred chhhH------------HHHHHHHHHCCEEEEEEecCCCCCHHHH---HHHHHHHhc---CCCEEEEEECCccccc
Confidence 86432 1233456778999999999776433222 233332222 5679999999998753
No 269
>PRK00098 GTPase RsgA; Reviewed
Probab=99.51 E-value=1.8e-13 Score=123.88 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=107.6
Q ss_pred CCCceEEEccccCCCCCC-C--------------------CCCCCC-CCCChhhHHHHHHhhCCeEEEeec-cccchhhh
Q 020714 44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNA-AKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRI 100 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~-~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~ 100 (322)
..+|+++-+.|+.-|.++ + ||+||. .++....|..++...+..+++.++ ++.+...+
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L 158 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDEL 158 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH
Confidence 478888888887666543 2 799997 444556788888888888888888 77776665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-------Cc
Q 020714 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------NT 173 (322)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~-------~~ 173 (322)
. ..+ .+..++++|.+|||||||+|+|.+.....++..+ +|
T Consensus 159 ~--------------~~l-------------------~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~ht 205 (298)
T PRK00098 159 K--------------PLL-------------------AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHT 205 (298)
T ss_pred H--------------hhc-------------------cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcc
Confidence 1 111 1335899999999999999999987554433333 25
Q ss_pred eeeeEEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714 174 TTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (322)
Q Consensus 174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~ 248 (322)
|+......+. ....++||||+..+.. ....+.....|.........|. |.-+.|..++.+.+...++
T Consensus 206 T~~~~~~~~~---~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~-----f~~c~h~~ep~c~v~~a~~ 273 (298)
T PRK00098 206 TTHVELYDLP---GGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCK-----FRNCTHLHEPGCAVKAAVE 273 (298)
T ss_pred cccEEEEEcC---CCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCC-----CCCCcCCCCCCChHHHHHH
Confidence 5444432222 2349999999986543 2344556666666555555544 4444566777777666555
No 270
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=5.8e-13 Score=114.80 Aligned_cols=174 Identities=17% Similarity=0.261 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
++|+++|.+|+||||++|.+++......+ ...+.|...........+..+.++||||+..... ........+.+.+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG--SDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE--EHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHH
Confidence 47999999999999999999998876554 2344555555555567899999999999965432 23333333444333
Q ss_pred -hcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHHH--------HHHHHhcCCC
Q 020714 219 -AVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLK--------VAEQFKHLPG 288 (322)
Q Consensus 219 -~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~--------~~~~~~~~~~ 288 (322)
.....+++|+|+... +.+..+.....++.. ++.... .-+++|+|..|...... .++ ....+.+..+
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH--hHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcC
Confidence 346789999999997 667767666665554 443222 34899999998776533 111 1122222223
Q ss_pred CCcEEEeecC------CCCCHHHHHHHHHHHhhhcCCc
Q 020714 289 YERIFMTSGL------KGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 289 ~~~~~~iSa~------~g~gi~el~~~i~~~l~~~~~~ 320 (322)
. .++.++.+ ....+.+|++.|.+.+.+++-.
T Consensus 155 ~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~ 191 (212)
T PF04548_consen 155 G-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ 191 (212)
T ss_dssp T-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred C-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 2 46766665 4468999999999999887643
No 271
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.49 E-value=1.1e-13 Score=123.62 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=88.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeee-----eecC------------CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVA-----AVSR------------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~-----~~~~------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 203 (322)
+|+++|.+|+|||||+|+|+...-. .+.. ..+.+.......+...+..+.+|||||...+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 4899999999999999998743211 1110 0122223333345556788999999998532
Q ss_pred CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH
Q 020714 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF 283 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~ 283 (322)
...+...+..+|++++|+|++.+.......+..++.. . +.|.++|+||+|+.... .......+
T Consensus 78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~---~---~~p~iivvNK~D~~~~~--~~~~~~~l 140 (268)
T cd04170 78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE---A---GIPRIIFINKMDRERAD--FDKTLAAL 140 (268)
T ss_pred ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH---c---CCCEEEEEECCccCCCC--HHHHHHHH
Confidence 1233345677899999999977544433333333332 2 46799999999987642 23333344
Q ss_pred hcCCCCCcEE--EeecCCCCCHHHHHHHH
Q 020714 284 KHLPGYERIF--MTSGLKGAGLKALTQYL 310 (322)
Q Consensus 284 ~~~~~~~~~~--~iSa~~g~gi~el~~~i 310 (322)
....+. +++ .+...+|.|+..+.+.+
T Consensus 141 ~~~~~~-~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 141 QEAFGR-PVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred HHHhCC-CeEEEEecccCCCceeEEEEcc
Confidence 333333 233 34456666655444444
No 272
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.49 E-value=3.6e-13 Score=127.92 Aligned_cols=163 Identities=17% Similarity=0.266 Sum_probs=100.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEE---------------------------EEEe----
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVL---------------------------GVMT---- 183 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~---------------------------~~~~---- 183 (322)
...++|+++|.-..|||||+.+|++..... .....|.|.+.-. ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 457899999999999999999999743211 0011111100000 0000
Q ss_pred --eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcE
Q 020714 184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKR 260 (322)
Q Consensus 184 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ 260 (322)
.....+.|+||||... ....++..+..+|++++|+|+..+. ..+.......+..++. .++
T Consensus 112 ~~~~~~~i~~IDtPGH~~------------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi-----~~i 174 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDI------------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKL-----KHI 174 (460)
T ss_pred cccccceEeeeeCCCHHH------------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCC-----CcE
Confidence 0023689999999642 3455566678889999999997642 2222233333333332 358
Q ss_pred EEEEeCCCCCCChhH---HHHHHHHHhc-CCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 261 VLCMNKVDLVTKKKD---LLKVAEQFKH-LPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 261 ivV~NK~Dl~~~~~~---~~~~~~~~~~-~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
|+|+||+|+.+.... ..+....+.. .....+++++||++|.|+++|++.|.+.+..
T Consensus 175 IVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 175 IILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 999999999753221 1122222211 1123479999999999999999999976653
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.49 E-value=1.7e-13 Score=117.82 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=83.8
Q ss_pred ccEEEEeCCCccc-CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 187 TQICIFDTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 187 ~~~~l~DtpG~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
....++||||+++ |.+..+...+.+.+...+. -+++||+|..+. +.+...+..++-..........|+|+|.|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~p-----tvv~YvvDt~rs-~~p~tFMSNMlYAcSilyktklp~ivvfN 189 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFP-----TVVVYVVDTPRS-TSPTTFMSNMLYACSILYKTKLPFIVVFN 189 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCC-----eEEEEEecCCcC-CCchhHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4579999999964 4455555666666665544 678999998542 33333444455444444445678999999
Q ss_pred CCCCCCChh------HHHHHHHHHh-------------------cCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 266 KVDLVTKKK------DLLKVAEQFK-------------------HLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 266 K~Dl~~~~~------~~~~~~~~~~-------------------~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
|+|+.+... +.+.++..+. ..+.....+.+|+.+|.|.+++|..+.+.+.+..
T Consensus 190 K~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 190 KTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 999988742 2222222222 1122235899999999999999999998877643
No 274
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.49 E-value=5.2e-13 Score=118.89 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe--e---eeecC----------------CCCceeeeEEEEEeeCCccEEEEeCCCcc
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK--V---AAVSR----------------KTNTTTHEVLGVMTKADTQICIFDTPGLM 198 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~--~---~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 198 (322)
-+|+++|.+|+|||||+++|+... . ..+.. .-+.+.......+...+..+.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999987421 1 11110 01222223333455678899999999986
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.+. ..++..+..+|++++|+|++.+.......+ ++..... +.|+++++||+|+...
T Consensus 83 df~------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i---~~~~~~~---~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFS------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKL---FEVCRLR---GIPIITFINKLDREGR 138 (267)
T ss_pred HHH------------HHHHHHHHHCCEEEEEEECCCCccHHHHHH---HHHHHhc---CCCEEEEEECCccCCC
Confidence 431 123445677899999999976543322222 2222222 4679999999998764
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.48 E-value=1.6e-12 Score=113.03 Aligned_cols=140 Identities=16% Similarity=0.334 Sum_probs=89.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...+..|+++|.+|+|||||+|.|.+.. ........|+. ......+..+.++||||.. .
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~~~~~i~~vDtPg~~---------------~ 95 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTGKKRRLTFIECPNDI---------------N 95 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEecCCceEEEEeCCchH---------------H
Confidence 4567889999999999999999998652 11122222221 1122457789999999842 2
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHHHH----HHHHH-hcCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK----VAEQF-KHLPG 288 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~~~----~~~~~-~~~~~ 288 (322)
.++..+..+|++++|+|++.+....+..+..++...+ .| +++|+||+|+.......+. ..+.+ .....
T Consensus 96 ~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g------~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (225)
T cd01882 96 AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHG------FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ 169 (225)
T ss_pred HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcC------CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 2334457789999999997766555544544444322 34 4569999999754332222 22222 22344
Q ss_pred CCcEEEeecCCCC
Q 020714 289 YERIFMTSGLKGA 301 (322)
Q Consensus 289 ~~~~~~iSa~~g~ 301 (322)
..+++++||++.-
T Consensus 170 ~~ki~~iSa~~~~ 182 (225)
T cd01882 170 GAKLFYLSGIVHG 182 (225)
T ss_pred CCcEEEEeeccCC
Confidence 5689999999874
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=8.3e-13 Score=117.99 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=87.2
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
......++|+++|.+||||||++|+|++.+...++...+.+...........+..+.++||||+.... .........+
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHH
Confidence 33456889999999999999999999998876666655555444444444578899999999997531 1111111222
Q ss_pred HHHHhhcccccEEEEEEeCCC-CCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~-~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+..+. -...|++++|...+. +.+..+..+...+..+-.... -.++|+|+|++|..++
T Consensus 111 k~~l~-~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i-w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 111 KRFLL-GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI-WRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHhh-cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh-hccEEEEEECCccCCC
Confidence 22211 236899999966532 344455555555554422211 2469999999998743
No 277
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=7e-13 Score=132.98 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC---C--eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG---T--KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~---~--~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
+..+|+++|.+|+|||||+|+|+. . ....+. ...|+|.+.....+...+..+.|+||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 456899999999999999999963 1 111111 24467777666666777889999999998642
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
...+...+..+|++++|+|+..+...++..+...+...+ .|.++++||+|+..
T Consensus 89 ------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~------~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK------VPRIAFVNKMDRTG 141 (693)
T ss_pred ------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC------CCEEEEEECCCCCC
Confidence 112444566779999999998776666655555555443 56899999999874
No 278
>PRK13768 GTPase; Provisional
Probab=99.47 E-value=7.3e-13 Score=117.14 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=76.6
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.++||||..++... ......+.+.+.... ++++++|+|++......+.....++....... .+.|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---RESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEh
Confidence 47899999998754321 111112222222222 79999999997654444433333332111101 25789999999
Q ss_pred CCCCCChhH--HHHHHH-------------------------HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 267 VDLVTKKKD--LLKVAE-------------------------QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 267 ~Dl~~~~~~--~~~~~~-------------------------~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+|+....+. ...... .+.+.....+++++|++++.|+++|+++|.+.+..++
T Consensus 172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 999865321 111111 1122233347899999999999999999999987553
No 279
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.47 E-value=5.3e-14 Score=114.38 Aligned_cols=135 Identities=23% Similarity=0.258 Sum_probs=81.3
Q ss_pred hhHHHHHHhhCCeEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCch
Q 020714 74 PTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK 152 (322)
Q Consensus 74 ~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGK 152 (322)
++|...|+..++.+++.++ +..+...+ +..+ ..-.++++|++||||
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l--------------~~~l-------------------~~k~~vl~G~SGvGK 48 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEEL--------------KELL-------------------KGKTSVLLGQSGVGK 48 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHH--------------HHHH-------------------TTSEEEEECSTTSSH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHH--------------HHHh-------------------cCCEEEEECCCCCCH
Confidence 6799999999999999999 78887776 1111 124588999999999
Q ss_pred hHHHHHHhCCeeee---ecC----CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHHHHHHHHhhccccc
Q 020714 153 SSIINYMVGTKVAA---VSR----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFE 224 (322)
Q Consensus 153 Stlin~l~~~~~~~---~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~ad 224 (322)
|||||.|.+..... ++. .-+||+......+ .....++||||+..+... .....+...|.........|.
T Consensus 49 SSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~~Ck 125 (161)
T PF03193_consen 49 SSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAGQCK 125 (161)
T ss_dssp HHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTTHSS
T ss_pred HHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCccccccCCHHHHHHHHHHhccccCCCC
Confidence 99999999864322 222 2245555544333 234599999999877643 333333333333333334444
Q ss_pred EEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 225 VLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 225 ~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
|.-+.|..++.+.+...++.
T Consensus 126 -----F~~C~H~~Ep~CaV~~av~~ 145 (161)
T PF03193_consen 126 -----FRDCTHIHEPGCAVKAAVEN 145 (161)
T ss_dssp -----STTTTSSSSTT-HHHHHHHT
T ss_pred -----ccCCCCCCCCCChHHHHHHC
Confidence 34456678888888777663
No 280
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=3.6e-12 Score=103.74 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=106.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-----cC-CCC---ceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-----SR-KTN---TTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHK 207 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-----~~-~~~---~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~ 207 (322)
...+|+++|+-++||||++..+.......+ .. ..+ +|.....+.+... +..++|+||||+.++
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------- 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------- 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence 467899999999999999999987653222 11 112 3333333334444 378999999999754
Q ss_pred hHHHHHHHHHhh-cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 208 DVKVRVESAWSA-VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 208 ~~~~~~~~~~~~-~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
.-.|+. .+.+.++++++|.+.+.......+.+.+.... ..|+++..||.|+..... .+++.+.+...
T Consensus 82 ------~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~ 149 (187)
T COG2229 82 ------KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN-----PIPVVVAINKQDLFDALP-PEKIREALKLE 149 (187)
T ss_pred ------HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhcc-----CCCEEEEeeccccCCCCC-HHHHHHHHHhc
Confidence 333333 47789999999998876663334444443322 168999999999987532 33333444333
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
.--.++++++|.+++|..+.++.+...
T Consensus 150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCCceeeeecccchhHHHHHHHHHhh
Confidence 222379999999999999999888766
No 281
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.47 E-value=1.3e-13 Score=119.11 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=90.6
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHh------CCeeee--ecCCCCce---------------ee--e-EEE-------
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAA--VSRKTNTT---------------TH--E-VLG------- 180 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~--~~~~~~~t---------------~~--~-~~~------- 180 (322)
+...+.+.|+|.|+||+|||||++.|. +.+++. +.+....| .+ . ...
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 445578899999999999999999875 233332 22211111 00 0 000
Q ss_pred ------------EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714 181 ------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (322)
Q Consensus 181 ------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~ 248 (322)
.+...|.++.|+.|.|..+ .+ .+....+|.+++|+-...+..-+ .++.-+.
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQ-------sE--------~~I~~~aD~~v~v~~Pg~GD~iQ--~~KaGim 166 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQ-------SE--------VDIADMADTVVLVLVPGLGDEIQ--AIKAGIM 166 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSST-------HH--------HHHHTTSSEEEEEEESSTCCCCC--TB-TTHH
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCc-------cH--------HHHHHhcCeEEEEecCCCccHHH--HHhhhhh
Confidence 0112468899999999864 11 13456789999999875443322 2333334
Q ss_pred HhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh-----cCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-----HLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
++. .++|+||+|+........+....+. ...+.+|++.+||.+|.||++|++.|.++..
T Consensus 167 Eia--------Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 167 EIA--------DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HH---------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hhc--------cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 433 6999999996544332222222222 1124578999999999999999999988654
No 282
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.47 E-value=5.3e-13 Score=113.13 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=80.9
Q ss_pred CCCceEEEccccCCCCCC-----------------CCCCCCCCCCChh----hHHHHH--HhhC---CeEEEeec-cccc
Q 020714 44 NDCDSVFDSSYFRIPTID-----------------DPQNNNAAKKQEP----TWDEKY--RERT---DRIVFGEE-AQKG 96 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-----------------~~k~dl~~~~~~~----~w~~~~--~~~~---~~i~f~~~-~~~~ 96 (322)
..+|+++.+.|++.+... .||+|+.+++... .|...+ ...+ ..+++.++ ++.|
T Consensus 33 ~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~g 112 (190)
T cd01855 33 PKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWG 112 (190)
T ss_pred cCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCC
Confidence 368888888887655422 2899997655433 344111 2222 24677888 7778
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee--------eeec
Q 020714 97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--------AAVS 168 (322)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~--------~~~~ 168 (322)
...+++ .+...+ +....++++|.||||||||||+|.+... ..++
T Consensus 113 i~eL~~--------------~l~~~l--------------~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~ 164 (190)
T cd01855 113 VEELIN--------------AIKKLA--------------KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTS 164 (190)
T ss_pred HHHHHH--------------HHHHHh--------------hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccC
Confidence 776621 111111 1245799999999999999999987542 3567
Q ss_pred CCCCceeeeEEEEEeeCCccEEEEeCCCc
Q 020714 169 RKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (322)
Q Consensus 169 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 197 (322)
..+|+|+......+. ..+.++||||+
T Consensus 165 ~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 165 PIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 788999887765432 25799999996
No 283
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=8.6e-13 Score=102.14 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=110.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.+++..+|-.++||||++-.|.-.....+.++.|....+ +.+.+..+.+||..|... ++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvet----VtykN~kfNvwdvGGqd~-------------iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK-------------IRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEE----EEeeeeEEeeeeccCchh-------------hhHH
Confidence 34688999999999999999999766544444444433332 336688899999999853 3333
Q ss_pred Hh-hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-----HhcCCCCC
Q 020714 217 WS-AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-----FKHLPGYE 290 (322)
Q Consensus 217 ~~-~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 290 (322)
|. ++....++|+|+|..+. ..-++.-.++-..+......+.++++..||.|+..+.... ++.+. +.+..+
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq-ei~d~leLe~~r~~~W-- 153 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQ-EIQDKLELERIRDRNW-- 153 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHH-HHHHHhccccccCCcc--
Confidence 43 46888999999999764 3333333344455555666678899999999998764321 21222 223333
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+.++||.+|+|+.|-+.||...+.
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhcc
Confidence 3789999999999999999988765
No 284
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.46 E-value=2.3e-12 Score=115.35 Aligned_cols=128 Identities=18% Similarity=0.275 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecC--------CCCce-eeeEEEEEeeCC--ccEEEEeCCCcccCCCCCC-
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------KTNTT-THEVLGVMTKAD--TQICIFDTPGLMLNKSGYS- 205 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~- 205 (322)
-.++|+++|.+|+|||||+|+|++..+..... ...++ .......+...+ ..+.+|||||+........
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 35899999999999999999999877654322 12222 122222233334 4689999999976532110
Q ss_pred hhhHH----HHHHHHHh---------hc--ccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714 206 HKDVK----VRVESAWS---------AV--NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269 (322)
Q Consensus 206 ~~~~~----~~~~~~~~---------~~--~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl 269 (322)
...+. ..+...+. .+ ..+|+++++++.+.+ ....+..+ ++.+.. .+|+++|+||+|+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~---lk~l~~----~v~vi~VinK~D~ 155 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEF---MKRLSK----RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHH---HHHHhc----cCCEEEEEECCCc
Confidence 11111 11222111 11 357889999988643 22333333 333332 3679999999999
Q ss_pred CCC
Q 020714 270 VTK 272 (322)
Q Consensus 270 ~~~ 272 (322)
...
T Consensus 156 l~~ 158 (276)
T cd01850 156 LTP 158 (276)
T ss_pred CCH
Confidence 763
No 285
>PRK13351 elongation factor G; Reviewed
Probab=99.45 E-value=8.4e-13 Score=132.68 Aligned_cols=117 Identities=20% Similarity=0.293 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--e---eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--V---AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--~---~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
...+|+++|..|+|||||+++|+... . ..+. ...+.|.......+...+..+.+|||||+..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 35689999999999999999997421 0 0000 01233333333345566789999999998643
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
. ..+...+..+|++++|+|++.+...........+. .. +.|+++|+||+|+...
T Consensus 87 ~------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~---~~---~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 T------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQAD---RY---GIPRLIFINKMDRVGA 140 (687)
T ss_pred H------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---hc---CCCEEEEEECCCCCCC
Confidence 1 12334567789999999997765444333333322 22 4679999999998864
No 286
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.45 E-value=1.2e-12 Score=124.46 Aligned_cols=152 Identities=17% Similarity=0.250 Sum_probs=95.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe--ee----------------------------eecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~~----------------------------~~~~~~~~t~~~~~~~~~~~~ 186 (322)
+..++|+++|..++|||||+.+|+... .. .....-|.|.+.....+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456889999999999999999886310 00 011123556555555555667
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCc
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (322)
..+.++||||...| +..+...+..+|++++|+|+..+.- .+......+...++. .+
T Consensus 85 ~~i~liDtPGh~df------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi-----~~ 147 (447)
T PLN00043 85 YYCTVIDAPGHRDF------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV-----KQ 147 (447)
T ss_pred EEEEEEECCCHHHH------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCC-----Cc
Confidence 78999999998643 3445556788999999999976421 111122222333332 24
Q ss_pred EEEEEeCCCCCCC---hhHH---HHHHHHHhcCCCC----CcEEEeecCCCCCHHH
Q 020714 260 RVLCMNKVDLVTK---KKDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKA 305 (322)
Q Consensus 260 ~ivV~NK~Dl~~~---~~~~---~~~~~~~~~~~~~----~~~~~iSa~~g~gi~e 305 (322)
+|+++||+|+... .... .+....+.+..++ .+++++||++|+|+.+
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 7899999998621 1112 2223333333332 3699999999999853
No 287
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.45 E-value=1.5e-12 Score=130.77 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--e---eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--V---AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--~---~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
+..+|+++|.+|+|||||+|+|+... . ..+. ...|+|.+.....+...+..+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 35689999999999999999996321 1 1111 12466666666667778889999999999753
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHH
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLK 278 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~ 278 (322)
.. .+...+..+|++++|+|+..+...+...+..++... +.|+++|+||+|+.... ....+
T Consensus 89 ~~------------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~ivviNK~D~~~~~~~~~~~~ 150 (689)
T TIGR00484 89 TV------------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY------EVPRIAFVNKMDKTGANFLRVVNQ 150 (689)
T ss_pred hH------------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHH
Confidence 21 223445677999999999876555544444443332 36799999999998643 11222
Q ss_pred HHHHHhcCCCCCcEEEeecCCC
Q 020714 279 VAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 279 ~~~~~~~~~~~~~~~~iSa~~g 300 (322)
....+ .......++++|+..+
T Consensus 151 i~~~l-~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 151 IKQRL-GANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHh-CCCceeEEeccccCCC
Confidence 22222 2223334677887666
No 288
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=3.4e-14 Score=114.28 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=111.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++++++|..+|||||+|.+++.+-+..- ....|+..-.....+......+.+|||+|+.++.. +
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa----------I-- 85 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA----------I-- 85 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH----------H--
Confidence 4578999999999999999999986543321 12222221111111223456778999999986421 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
+-.++++|...++||..+++.++ +.+..|-+.+... ...+|.++|-||+|+.+.......+.+.+++.... .++.+
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SF--ea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~-RlyRt 161 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSF--EATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK-RLYRT 161 (246)
T ss_pred HHHHhccccceEEEEecccHHHH--HHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh-hhhhh
Confidence 22457889999999999776554 4466666666543 23688999999999997644333333344333333 47999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
|++...|+...|.+|++.+...
T Consensus 162 Svked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 162 SVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.42 E-value=8.1e-12 Score=114.51 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS 202 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 202 (322)
++|+++|.||||||||+|+|++.. ..+++.|++|.+...+.....+ ..+.++|+||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999988 6788889999888777654433 2489999999985322
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s 233 (322)
.......+.+..++.||++++|+|+.
T Consensus 82 -----~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 -----KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred -----hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11223456777889999999999985
No 290
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.3e-12 Score=116.18 Aligned_cols=153 Identities=21% Similarity=0.312 Sum_probs=103.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC---------------------C---eeee------ecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG---------------------T---KVAA------VSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~---------------------~---~~~~------~~~~~~~t~~~~~~~~~~~~ 186 (322)
+..++++|+|...+|||||+-+|+- + .++. ....-|.|.+.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 4568899999999999999998862 0 0111 11223677776666666677
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC-------CCCcHHHHHHHHHHhcccCCCCCc
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK 259 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~-------~~~~~~~~~~~l~~~~~~~~~~~p 259 (322)
..++++|+||... .+..+..-...||+.++|+|++.+ ...+.....-+...++.. .
T Consensus 85 ~~~tIiDaPGHrd------------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~-----~ 147 (428)
T COG5256 85 YNFTIIDAPGHRD------------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK-----Q 147 (428)
T ss_pred ceEEEeeCCchHH------------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc-----e
Confidence 7899999999654 366677778889999999999876 223333333444444532 3
Q ss_pred EEEEEeCCCCCCChh-HHHHHH---HHHhcCCCC----CcEEEeecCCCCCHHHH
Q 020714 260 RVLCMNKVDLVTKKK-DLLKVA---EQFKHLPGY----ERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 260 ~ivV~NK~Dl~~~~~-~~~~~~---~~~~~~~~~----~~~~~iSa~~g~gi~el 306 (322)
+|+++||+|+..-.+ ..++.. ..+.+..|+ .++++||+.+|+|+.+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 899999999986432 222222 223333333 36999999999998754
No 291
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.7e-13 Score=103.19 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=108.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+..++.++|..|+||+|++-++.-.++....+.+|...... ...+-++.+||..|... ++..|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v----~yKNLk~~vwdLggqtS-------------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETV----PYKNLKFQVWDLGGQTS-------------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccc----ccccccceeeEccCccc-------------ccHHH
Confidence 56789999999999999999987777666666665544333 24678899999998753 22233
Q ss_pred h-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHH-HHHHhcCCCCC
Q 020714 218 S-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKV-AEQFKHLPGYE 290 (322)
Q Consensus 218 ~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~-~~~~~~~~~~~ 290 (322)
. ++.+.|.+|||+|.++...-... .+..++.+-..+ +..+++++||.|.....-. .... ...+.+. .-
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq---~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r--~~ 154 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ---HAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR--IW 154 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc---CceEEEEeccccchhhhhHHHHHHHhChHHHhhh--ee
Confidence 3 46788999999999875433322 344455444443 3558999999998764221 1111 1222221 23
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.+|.+||.+|+|+++.++|+.+-+..+
T Consensus 155 ~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 155 QIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred EEEeeccccccCCcHHHHHHHHHHhcc
Confidence 689999999999999999999988754
No 292
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.41 E-value=6.9e-12 Score=98.57 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=112.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
..+..+|+++|.-+||||++|..|+-.+.........|..+.....+..+ ...+.|.||.|+..... +
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~----e----- 76 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ----E----- 76 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh----h-----
Confidence 45678999999999999999999875443322222333344444333222 34688999999875321 1
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+.+ .++..+|++++|++..+..+++.- .+..++...+ ....+|+++++||+|+..+.....+....+++.-.. .
T Consensus 77 Lpr--hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkv-k 151 (198)
T KOG3883|consen 77 LPR--HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKV-K 151 (198)
T ss_pred hhH--hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcCHHHHHHHHhhhhe-e
Confidence 111 345677999999999775544332 2333444422 334589999999999987766555566666655443 5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.++++|.....+-|-|..+...+..
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhccC
Confidence 8999999999999999998877644
No 293
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.39 E-value=1.1e-11 Score=105.70 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=55.0
Q ss_pred ccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-hhHHHHHHHHHhcCCCCCcEEEeecCCCC
Q 020714 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGA 301 (322)
Q Consensus 223 ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSa~~g~ 301 (322)
+|.++.|+|+.+..... ......+.. -.++|+||+|+.+. ....+...+......+..+++++||++|+
T Consensus 113 ~~~~i~vvD~~~~~~~~----~~~~~qi~~------ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIP----RKGGPGITR------SDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhh----hhhHhHhhh------ccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 47899999995432211 111122221 25999999999853 12333334444444566789999999999
Q ss_pred CHHHHHHHHHHHhh
Q 020714 302 GLKALTQYLMEQFK 315 (322)
Q Consensus 302 gi~el~~~i~~~l~ 315 (322)
|+++++++|.+.+.
T Consensus 183 gi~el~~~i~~~~~ 196 (199)
T TIGR00101 183 GLDTVIDWIEHYAL 196 (199)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999998764
No 294
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.38 E-value=3.5e-12 Score=123.50 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=75.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC--Cee---eeecC----------------CCCceeeeEEEEEeeCCccEEEEeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVSR----------------KTNTTTHEVLGVMTKADTQICIFDTP 195 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~--~~~---~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dtp 195 (322)
.+..+|+++|.+|+|||||+++|+. +.. ..+.. .-|.+.......+...+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567899999999999999999852 211 11110 11233333333455678889999999
Q ss_pred CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
|+..+ ...++..+..+|++|+|+|+..+.......+. +..... +.|+++++||+|+..
T Consensus 89 G~~df------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~---~~~~~~---~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDF------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLM---EVTRLR---DTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhH------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH---HHHHhc---CCCEEEEEECccccC
Confidence 98533 12344556788999999999765433322332 222222 468999999999865
No 295
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=2.4e-12 Score=118.31 Aligned_cols=157 Identities=16% Similarity=0.254 Sum_probs=103.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCe--------------eeeecCCCCceeeeEEEEEee-----CCccEEEEeCCCcccCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTK--------------VAAVSRKTNTTTHEVLGVMTK-----ADTQICIFDTPGLMLNK 201 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~--------------~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG~~~~~ 201 (322)
+..++-.-.-|||||..+|+... .-.....-|.|...+...+.. ....+.|+||||+..|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 46677777899999999987421 011223345665544443322 23567899999999875
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE 281 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~ 281 (322)
-..+ ..+..|.+.++|+|++.+... +.+......+.. +.-+|-|+||+||+..+ .+....
T Consensus 91 YEVS------------RSLAACEGalLvVDAsQGveA--QTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~ 150 (603)
T COG0481 91 YEVS------------RSLAACEGALLVVDASQGVEA--QTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQ 150 (603)
T ss_pred EEeh------------hhHhhCCCcEEEEECccchHH--HHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHH
Confidence 4222 234567999999999875433 334443333332 34499999999998743 334444
Q ss_pred HHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 282 QFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 282 ~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++.+..|.. ..+.+|||+|.||+++++.|++.+..-
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 444444443 579999999999999999999988653
No 296
>PRK12740 elongation factor G; Reviewed
Probab=99.37 E-value=6.6e-12 Score=125.99 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=71.1
Q ss_pred EcCCCCchhHHHHHHhCCeee-----ee------------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChh
Q 020714 145 IGAPNAGKSSIINYMVGTKVA-----AV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK 207 (322)
Q Consensus 145 ~G~~~vGKStlin~l~~~~~~-----~~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 207 (322)
+|.+|+|||||+++|+...-. .+ ....|.|.......+...+..+.+|||||...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 589999999999999532110 00 112344444444456667889999999998632
Q ss_pred hHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
...+...+..+|++++|+|++.+.......+...+.. . +.|+++|+||+|+...
T Consensus 74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~---~---~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK---Y---GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH---c---CCCEEEEEECCCCCCC
Confidence 1223344567899999999977654433333332222 2 4679999999998754
No 297
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=2.7e-11 Score=111.14 Aligned_cols=166 Identities=19% Similarity=0.286 Sum_probs=89.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCee-----eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 210 (322)
...+++|+|+|.+|+|||||||+|.|-.- +.++. ..||..... +....-..+.+||.||+.... .+..
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~-Y~~p~~pnv~lWDlPG~gt~~--f~~~--- 104 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTP-YPHPKFPNVTLWDLPGIGTPN--FPPE--- 104 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EE-EE-SS-TTEEEEEE--GGGSS----HH---
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCee-CCCCCCCCCeEEeCCCCCCCC--CCHH---
Confidence 35678999999999999999999987321 11111 234443333 223445689999999997542 2222
Q ss_pred HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC-C----------Chh-HHHH
Q 020714 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV-T----------KKK-DLLK 278 (322)
Q Consensus 211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~-~----------~~~-~~~~ 278 (322)
..+.. ..+...|++|++.+. +++..+..+...+..++ +|+.+|-||+|.. . .++ ..++
T Consensus 105 ~Yl~~--~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~g------K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~ 174 (376)
T PF05049_consen 105 EYLKE--VKFYRYDFFIIISSE--RFTENDVQLAKEIQRMG------KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE 174 (376)
T ss_dssp HHHHH--TTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-------EEEEEE--HHHHHHHHHCC-STT--HHTHHHH
T ss_pred HHHHH--ccccccCEEEEEeCC--CCchhhHHHHHHHHHcC------CcEEEEEecccccHhhhhccCCcccCHHHHHHH
Confidence 22221 246777988887764 44555545555666655 4599999999961 0 111 1122
Q ss_pred ----HHHHHhcCC-CCCcEEEeecCCC--CCHHHHHHHHHHHhhhcC
Q 020714 279 ----VAEQFKHLP-GYERIFMTSGLKG--AGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 279 ----~~~~~~~~~-~~~~~~~iSa~~g--~gi~el~~~i~~~l~~~~ 318 (322)
....+.+.. ..+++|-+|+..- .++..|.+.|.+.+..++
T Consensus 175 IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 175 IRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 223333322 3357899999854 468889999998887653
No 298
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.35 E-value=1.1e-10 Score=105.92 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=90.0
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCcee-------e----------eEEE--E-------
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------H----------EVLG--V------- 181 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t~-------~----------~~~~--~------- 181 (322)
........|+|+|++|+|||||++.+.. ..+..+...+.... + .... .
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHL 108 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccc
Confidence 3445678899999999999999998753 22222111111000 0 0000 0
Q ss_pred -------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (322)
Q Consensus 182 -------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~ 248 (322)
+...+.++.|+||+|..... ...+..+|.++++.+.. ...+ +.....
T Consensus 109 ~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---------------~~i~~~aD~i~vv~~~~---~~~e--l~~~~~ 168 (300)
T TIGR00750 109 GGLSQATRELILLLDAAGYDVIIVETVGVGQSE---------------VDIANMADTFVVVTIPG---TGDD--LQGIKA 168 (300)
T ss_pred cchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---------------hHHHHhhceEEEEecCC---ccHH--HHHHHH
Confidence 01136788999999976321 12244568888775442 1111 222222
Q ss_pred HhcccCCCCCcEEEEEeCCCCCCChhHHH--H-H---HHHHhcC--CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLL--K-V---AEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~--~-~---~~~~~~~--~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+. .+|.++|+||+|+........ . . ...+... .+.++++++||++|.|+++++++|.+...
T Consensus 169 ~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 169 GLM-----EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHh-----hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 221 356899999999986532111 0 0 1111111 12246999999999999999999998744
No 299
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.35 E-value=2.3e-11 Score=105.34 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=98.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
||+++|+.|+||||+.+.+..+..+.-....+.|.+....... .+...+.+||+||+..+...+-... .-..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~-------~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQ-------REEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCC-------HHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccccc-------HHHH
Confidence 6899999999999999999987666544555566555544443 4567999999999986543210000 1123
Q ss_pred cccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-------HHHHHHHHhcCCC-CC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-------LLKVAEQFKHLPG-YE 290 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-------~~~~~~~~~~~~~-~~ 290 (322)
++.++++|||+|+....-..+ ..+...+..+.. ..|+..+-+.+.|+|+...... .+...+...+... ..
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~-~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~ 152 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ-YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDI 152 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHH-HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHH-hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccce
Confidence 678899999999963321111 133334444332 3457789999999999865321 1222333333221 13
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.++.+|-.. ..+-+.|..|++.+..+
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 578899887 58888888888877653
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.34 E-value=3.2e-12 Score=111.74 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=61.0
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
.+.++||||+.+... ....-..+-+.+.. ...-++++++|+.. .+.....+..++..+...-.-..|.|.|+||+
T Consensus 92 ~y~l~DtPGQiElf~---~~~~~~~i~~~L~~-~~~~~~v~LvD~~~-~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT---HSDSGRKIVERLQK-NGRLVVVFLVDSSF-CSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHH---HSHHHHHHHHTSSS-----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEE---echhHHHHHHHHhh-hcceEEEEEEeccc-ccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 789999999986432 11111122222222 33457888899843 23333333333322221111246899999999
Q ss_pred CCCCCh--h--------------------HHHHHHHHHhcCCCCC-cEEEeecCCCCCHHHHHHHHHHHh
Q 020714 268 DLVTKK--K--------------------DLLKVAEQFKHLPGYE-RIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 268 Dl~~~~--~--------------------~~~~~~~~~~~~~~~~-~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
|+.... . ........+-+.++.. +++++|+.+++|+++|+..|.+++
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 998721 0 0111122233345555 799999999999999999998875
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.34 E-value=2.2e-11 Score=104.67 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=41.8
Q ss_pred CcEEEEEeCCCCCCChh-HHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 258 QKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 258 ~p~ivV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.|.++++||+|+..... ........+....+..+++++||++|.|++++++++.+..
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999975422 2333344444444455799999999999999999998754
No 302
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.34 E-value=8.4e-12 Score=102.98 Aligned_cols=80 Identities=25% Similarity=0.270 Sum_probs=56.7
Q ss_pred EEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-hHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714 225 VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (322)
Q Consensus 225 ~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi 303 (322)
+-++|+|++.+..-+. +. .+... .-.++|+||.|+.+.. .+.+...+.....++..+++++|+++|+|+
T Consensus 120 ~~v~VidvteGe~~P~--------K~-gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 120 LRVVVIDVTEGEDIPR--------KG-GPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEEECCCCCCCcc--------cC-CCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 7788888865533221 10 00011 1379999999998763 345555666777778889999999999999
Q ss_pred HHHHHHHHHHh
Q 020714 304 KALTQYLMEQF 314 (322)
Q Consensus 304 ~el~~~i~~~l 314 (322)
+++++|+....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 303
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.33 E-value=1.4e-11 Score=93.78 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=94.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+++++|..|+|||||.+.|.|.....- .++...+ .+. ..+||||--.. ....+...+...
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--------KTQAve~-~d~---~~IDTPGEy~~--------~~~~Y~aL~tt~ 62 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--------KTQAVEF-NDK---GDIDTPGEYFE--------HPRWYHALITTL 62 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--------ccceeec-cCc---cccCCchhhhh--------hhHHHHHHHHHh
Confidence 689999999999999999988653211 1111111 111 35899996422 122344445556
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
..+|++++|-.+.++.+..- ..+..+. .+|+|-|++|+|+..+ .++....+.+.+ -|..++|.+|+.++
T Consensus 63 ~dadvi~~v~~and~~s~f~----p~f~~~~-----~k~vIgvVTK~DLaed-~dI~~~~~~L~e-aGa~~IF~~s~~d~ 131 (148)
T COG4917 63 QDADVIIYVHAANDPESRFP----PGFLDIG-----VKKVIGVVTKADLAED-ADISLVKRWLRE-AGAEPIFETSAVDN 131 (148)
T ss_pred hccceeeeeecccCccccCC----ccccccc-----ccceEEEEecccccch-HhHHHHHHHHHH-cCCcceEEEeccCc
Confidence 78899999998866543322 2222222 4569999999999863 444443444443 35668999999999
Q ss_pred CCHHHHHHHHHHH
Q 020714 301 AGLKALTQYLMEQ 313 (322)
Q Consensus 301 ~gi~el~~~i~~~ 313 (322)
.|+++|++.+...
T Consensus 132 ~gv~~l~~~L~~~ 144 (148)
T COG4917 132 QGVEELVDYLASL 144 (148)
T ss_pred ccHHHHHHHHHhh
Confidence 9999999988653
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=7.6e-11 Score=108.10 Aligned_cols=168 Identities=12% Similarity=0.189 Sum_probs=102.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC----eee-----------eecCCCC---ceeeeEE---EE--Eee---CCccEE
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT----KVA-----------AVSRKTN---TTTHEVL---GV--MTK---ADTQIC 190 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~----~~~-----------~~~~~~~---~t~~~~~---~~--~~~---~~~~~~ 190 (322)
...+-|+++|+-|+|||||||++.+. ... -+++.+| +|+++.. .. +.. ...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45677999999999999999999987 444 4566677 5555443 11 111 136889
Q ss_pred EEeCCCcccCCC-------------------CCChhhHHHHHHHHHhhcc-cccEEEEEE-eCC------CCCCCcHHHH
Q 020714 191 IFDTPGLMLNKS-------------------GYSHKDVKVRVESAWSAVN-LFEVLMVVF-DVH------RHLTSPDSRV 243 (322)
Q Consensus 191 l~DtpG~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~ad~ii~v~-D~s------~~~~~~~~~~ 243 (322)
++||+|+..... ..+++..++ --+...+. ++|+.++|. |.+ ....+.+.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAe--iGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe-- 170 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAE--IGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE-- 170 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhh--hhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH--
Confidence 999999975432 222222221 11334455 889999998 774 22233333
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.++.+++.. ++|+++|+||+|-... ........+...++. +++++||.. -.-+++...+.+.+++
T Consensus 171 -~~i~eLk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~v-pvl~v~c~~-l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 171 -RVIEELKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDV-PVLAMDVES-MRESDILSVLEEVLYE 235 (492)
T ss_pred -HHHHHHHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCC-ceEEEEHHH-cCHHHHHHHHHHHHhc
Confidence 444444443 4679999999994322 133334455555665 588888853 3556666666666654
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.32 E-value=5.5e-11 Score=114.74 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=82.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..-.++|+++|.+||||||++|.|++.....+... ++||. .........+..+.++||||+....... ........
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq--~~neeILk 191 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQ--SKNEKILS 191 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccch--HHHHHHHH
Confidence 34467899999999999999999999876665554 45554 3333344567889999999998653211 11122222
Q ss_pred HHHhhc--ccccEEEEEEeCCCCCCC-cHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCC
Q 020714 215 SAWSAV--NLFEVLMVVFDVHRHLTS-PDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 215 ~~~~~~--~~ad~ii~v~D~s~~~~~-~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
.....+ ...|++|+|..++..... .+..+...+.. ++.... ..+|||+|+.|..+
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 222222 357999999877533332 23334444443 343222 34899999999986
No 306
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=8.4e-12 Score=106.18 Aligned_cols=165 Identities=18% Similarity=0.274 Sum_probs=108.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...-+|+++|.|.||||||+..+++-+.. ....-.||.....+++...+..++++|.||+.+... .+ .-.-++.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAs-qg----kGRGRQv 133 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGAS-QG----KGRGRQV 133 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccc-cC----CCCCceE
Confidence 34568999999999999999999875532 233445777777788888999999999999986432 11 0112334
Q ss_pred HhhcccccEEEEEEeCCCCCCC-------------------------------------------cHHHHHHHHHHhccc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQ 253 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~-------------------------------------------~~~~~~~~l~~~~~~ 253 (322)
....+.||++++|+|++.+... .+..+...+.+++..
T Consensus 134 iavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~ 213 (364)
T KOG1486|consen 134 IAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIH 213 (364)
T ss_pred EEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeec
Confidence 4556888999999999653211 001111122222221
Q ss_pred CCC---------------------CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 254 APP---------------------KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 254 ~~~---------------------~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
+.. =.+.+.|.||+|...- +..++++.. +.-+-+||..+.|++.+++.|.+
T Consensus 214 Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~-----eevdrlAr~---PnsvViSC~m~lnld~lle~iWe 285 (364)
T KOG1486|consen 214 NAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSI-----EEVDRLARQ---PNSVVISCNMKLNLDRLLERIWE 285 (364)
T ss_pred cceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecH-----HHHHHHhcC---CCcEEEEeccccCHHHHHHHHHH
Confidence 110 0456888888886653 223444433 34688999999999999999998
Q ss_pred Hhh
Q 020714 313 QFK 315 (322)
Q Consensus 313 ~l~ 315 (322)
.+.
T Consensus 286 ~l~ 288 (364)
T KOG1486|consen 286 ELN 288 (364)
T ss_pred Hhc
Confidence 774
No 307
>PRK13796 GTPase YqeH; Provisional
Probab=99.30 E-value=2.1e-11 Score=113.37 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=71.7
Q ss_pred CCCCCCCCC----ChhhHHHHHHh-hCC---eEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 020714 63 PQNNNAAKK----QEPTWDEKYRE-RTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVK 133 (322)
Q Consensus 63 ~k~dl~~~~----~~~~w~~~~~~-~~~---~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (322)
||+||.+++ ....|..++.. .+. .+++.++ ++.+..++++. +...
T Consensus 104 NK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~--------------I~~~------------ 157 (365)
T PRK13796 104 NKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEA--------------IEKY------------ 157 (365)
T ss_pred EchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHH--------------HHHh------------
Confidence 899997653 34567665543 332 4677777 77776666211 1110
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
....++.++|.||||||||||+|++. +...++..||||++.....+. ....++||||+...
T Consensus 158 ---~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~~ 223 (365)
T PRK13796 158 ---REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIHR 223 (365)
T ss_pred ---cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC---CCcEEEECCCcccc
Confidence 01246999999999999999999854 345678899999987764332 23589999999743
No 308
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=96.01 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=105.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..+.++++++|-.|+|||||+..|.+.+.....+.-|...... -..+...+.+||..|... ++.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v---~~~g~f~LnvwDiGGqr~-------------IRp 77 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKV---EYDGTFHLNVWDIGGQRG-------------IRP 77 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEE---eecCcEEEEEEecCCccc-------------cch
Confidence 4578999999999999999999999887655555444433222 223457899999999863 222
Q ss_pred HHh-hcccccEEEEEEeCCCCCCCcHH--HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH-HHHHHhcC-CCCC
Q 020714 216 AWS-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK-VAEQFKHL-PGYE 290 (322)
Q Consensus 216 ~~~-~~~~ad~ii~v~D~s~~~~~~~~--~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~~~~~~~~-~~~~ 290 (322)
.|. ++.+.|.+|||+|..+....++. .+.++++..+.. .+|+++..||.|+.......+. ....+..+ ...-
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~---~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw 154 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLA---EVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW 154 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhh---ccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE
Confidence 232 45777999999997554322221 333444444433 5789999999999764322111 11111111 0112
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+.+|||.+++|+.+-.+|+.....
T Consensus 155 hIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 155 HIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred EeeeCccccccCccCcchhhhcCCC
Confidence 5889999999999999999886554
No 309
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.28 E-value=9.7e-12 Score=117.06 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=106.8
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
+....++|+++|..||||||||-+|++.++.. +.+. +..+.. ...........++||+.-... .
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~---------~-- 70 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDD---------R-- 70 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccch---------h--
Confidence 44578999999999999999999999876543 2111 112221 113345666899999743321 1
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhH-----HHHHHHHHhc
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKD-----LLKVAEQFKH 285 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~-----~~~~~~~~~~ 285 (322)
.....+++.||++++++++++..+-. .-...||-.+.... ..+.|+|+|+||+|...+... +..++.++.+
T Consensus 71 -~~l~~EirkA~vi~lvyavd~~~T~D-~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E 148 (625)
T KOG1707|consen 71 -LCLRKEIRKADVICLVYAVDDESTVD-RISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE 148 (625)
T ss_pred -HHHHHHHhhcCEEEEEEecCChHHhh-hhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH
Confidence 11124577889999999986643332 22334554444322 235899999999999875432 3444455544
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 286 LPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
. ..+++|||++-.++.|+|....+++.
T Consensus 149 i---EtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 149 I---ETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred H---HHHHhhhhhhhhhhHhhhhhhhheee
Confidence 3 46899999999999999998877654
No 310
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.8e-11 Score=95.80 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=105.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
.++.-++++.|-.|+|||||++.|...+..+.-++.+.|. ..+..++..++.+|..|... .-+-
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS----E~l~Ig~m~ftt~DLGGH~q------------Arr~ 80 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELSIGGMTFTTFDLGGHLQ------------ARRV 80 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh----HHheecCceEEEEccccHHH------------HHHH
Confidence 3456789999999999999999999887766555444433 33457899999999999642 1222
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH-HHH---HHHhcCCC---
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-KVA---EQFKHLPG--- 288 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~~---~~~~~~~~--- 288 (322)
.-..+..+|.+++.+|+.+.....+... ++-.-+......+.|+++.+||+|...+..+.+ ... ..+....+
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~-eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~ 159 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKK-ELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVN 159 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHH-HHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccccc
Confidence 2345688899999999976554443311 111111222234688999999999987642211 111 11111111
Q ss_pred -------CCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 289 -------YERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 289 -------~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
-..++.||...+.|..+.|.|+...+
T Consensus 160 ~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 160 LTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 11479999999999999998886543
No 311
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.25 E-value=1.5e-10 Score=118.74 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=87.9
Q ss_pred CchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------CCccEEEEeCCCcccCCCCCChhhHHH
Q 020714 150 AGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------ADTQICIFDTPGLMLNKSGYSHKDVKV 211 (322)
Q Consensus 150 vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~l~DtpG~~~~~~~~~~~~~~~ 211 (322)
++||||+.+|.+..++. +...|.|.+.-...+.. .-..+.||||||+..+.. .
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~------l-- 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS------L-- 542 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH------H--
Confidence 56999999999877643 22223332211111111 113489999999764311 1
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-----------------
Q 020714 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK----------------- 274 (322)
Q Consensus 212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~----------------- 274 (322)
....+..+|++++|+|++++...+.......+... +.|+++|+||+|+.+...
T Consensus 543 ----r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~ 612 (1049)
T PRK14845 543 ----RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH 612 (1049)
T ss_pred ----HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc------CCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence 11235678999999999876544443343433332 467999999999964210
Q ss_pred HHHHH-------HHHH-------------hcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 275 DLLKV-------AEQF-------------KHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 275 ~~~~~-------~~~~-------------~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
...+. ...+ .+..+..+++++||++|+||++|+.+|....
T Consensus 613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 00111 0001 1223456899999999999999999987543
No 312
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.24 E-value=2.8e-11 Score=107.48 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=66.6
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-----------------cEEEEeCCCcccCCCCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----------------QICIFDTPGLMLNKSGY 204 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~~ 204 (322)
|+++|.||||||||+|+|++... .+++.|++|.+...+.....+. .+.++|+||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~-- 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS-- 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc--
Confidence 57999999999999999999886 7788899998887776554433 389999999985322
Q ss_pred ChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s 233 (322)
.......+.+..++.+|++++|+|+.
T Consensus 78 ---~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 78 ---KGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ---hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 11122345667788999999999974
No 313
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.24 E-value=9.1e-11 Score=108.98 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=83.4
Q ss_pred CCceEEEccccCCCCCC-----------------CCCCCCCCCCC----hhhHHH-HHHhhCC---eEEEeec-cccchh
Q 020714 45 DCDSVFDSSYFRIPTID-----------------DPQNNNAAKKQ----EPTWDE-KYRERTD---RIVFGEE-AQKGKL 98 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-----------------~~k~dl~~~~~----~~~w~~-~~~~~~~---~i~f~~~-~~~~~~ 98 (322)
..++++-+.|+..+..+ .||+|+.++.. ...|.. ++.+.+. .+++.++ ++.+..
T Consensus 63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~ 142 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGID 142 (360)
T ss_pred CCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHH
Confidence 56788877776544322 28999987643 455653 3444443 3677787 777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCe-----eeeecCCCCc
Q 020714 99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNT 173 (322)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~-----~~~~~~~~~~ 173 (322)
++++.. ... ..+.+++++|.+|||||||+|+|++.. .+.++..||+
T Consensus 143 eL~~~l--------------~~~---------------~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgt 193 (360)
T TIGR03597 143 ELLDKI--------------KKA---------------RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT 193 (360)
T ss_pred HHHHHH--------------HHH---------------hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCe
Confidence 662111 110 013579999999999999999998743 4678888999
Q ss_pred eeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 174 TTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 174 t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
|.......+ +..+.++||||+...
T Consensus 194 T~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 194 TLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred EeeEEEEEe---CCCCEEEECCCCCCh
Confidence 988665332 345689999999754
No 314
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.23 E-value=1.3e-09 Score=95.11 Aligned_cols=83 Identities=16% Similarity=0.318 Sum_probs=49.7
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHH-HHhhcc-cccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEE
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVN-LFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~-~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..++|+||||+...............+.. +..++. ..+++++|+|+.......+. .+..++.. . ..|+++|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~---~~rti~V 198 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---Q---GERTIGV 198 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---c---CCcEEEE
Confidence 67899999999633211111222222333 344455 44699999998765555442 33333333 2 4569999
Q ss_pred EeCCCCCCChhH
Q 020714 264 MNKVDLVTKKKD 275 (322)
Q Consensus 264 ~NK~Dl~~~~~~ 275 (322)
+||+|......+
T Consensus 199 iTK~D~~~~~~~ 210 (240)
T smart00053 199 ITKLDLMDEGTD 210 (240)
T ss_pred EECCCCCCccHH
Confidence 999999875443
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.1e-10 Score=105.34 Aligned_cols=157 Identities=17% Similarity=0.270 Sum_probs=118.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCee--eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.|+-.|.---|||||+..+++... ......-|+|.+.........+..+.|+|.||...+ +..++.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~------------i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF------------ISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH------------HHHHHh
Confidence 367778888999999999998643 334456688888877777777788999999998643 556666
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC--CCCCcEEEee
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTS 296 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iS 296 (322)
.+...|..++|+|+.++...+..+....+..++.. ..++|+||+|..+.. ..++..+.+... +...+++.+|
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~-----~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s 143 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK-----NGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTS 143 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC-----ceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccc
Confidence 77888999999999887777766666777777754 269999999998753 222222222221 3455789999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 020714 297 GLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~ 315 (322)
+++|+||++|.+.|.+...
T Consensus 144 ~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 144 AKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccCCCHHHHHHHHHHhhh
Confidence 9999999999999999884
No 316
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.22 E-value=1.3e-10 Score=96.18 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=67.0
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeE-------------------------------------------
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV------------------------------------------- 178 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~------------------------------------------- 178 (322)
|+|+|..++|||||||+|+|.....++..+.|...+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 6899999999999999999976544333332111100
Q ss_pred ------------EEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHH
Q 020714 179 ------------LGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246 (322)
Q Consensus 179 ------------~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~ 246 (322)
..........+.|+||||+........ .-+...+..+|++++|+++....+..+ ...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~--------~~~~~~~~~~d~vi~V~~~~~~~~~~~--~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT--------EITEEYLPKADVVIFVVDANQDLTESD--MEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS--------HHHHHHHSTTEEEEEEEETTSTGGGHH--HHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH--------HHHHHhhccCCEEEEEeccCcccchHH--HHHH
Confidence 000111235689999999975322211 222244588899999999976544433 3333
Q ss_pred HHHhcccCCCCCcEEEEEeCC
Q 020714 247 IERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 247 l~~~~~~~~~~~p~ivV~NK~ 267 (322)
.+..... ...+++|.||+
T Consensus 151 ~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTT---CSSEEEEEE-G
T ss_pred HHHhcCC---CCeEEEEEcCC
Confidence 3333332 23399999995
No 317
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.1e-10 Score=104.07 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=104.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCee-----------------e---------------eecCCCCceeeeEEEEEee
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-----------------A---------------AVSRKTNTTTHEVLGVMTK 184 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~-----------------~---------------~~~~~~~~t~~~~~~~~~~ 184 (322)
+..++++-+|.-.=||||||-+|+.... . +.....|.|.+....++.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568899999999999999999874210 0 0112236777777777777
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
...+|.+.||||.+++ .+.+..-..-||+.|+++|+..+..++...-.....-++.. .+++.+
T Consensus 84 ~KRkFIiADTPGHeQY------------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIr-----hvvvAV 146 (431)
T COG2895 84 EKRKFIIADTPGHEQY------------TRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIR-----HVVVAV 146 (431)
T ss_pred ccceEEEecCCcHHHH------------hhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCc-----EEEEEE
Confidence 7889999999998755 34444566788999999999777665554444444444533 389999
Q ss_pred eCCCCCCChh-HHHHHH---HHHhcCCCC--CcEEEeecCCCCCHH
Q 020714 265 NKVDLVTKKK-DLLKVA---EQFKHLPGY--ERIFMTSGLKGAGLK 304 (322)
Q Consensus 265 NK~Dl~~~~~-~~~~~~---~~~~~~~~~--~~~~~iSa~~g~gi~ 304 (322)
||+||++..+ ..+++. ..|+...+. ..++++||+.|+|+-
T Consensus 147 NKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 147 NKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred eeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 9999998654 233322 233333333 258999999999984
No 318
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=5.8e-11 Score=101.52 Aligned_cols=161 Identities=22% Similarity=0.305 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
-+|+++|.|.|||||++..|.+-.. .+....++|-.+..+.....+..+.+.|.||+.+...+-. -.-++.+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk-----grg~qviav 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK-----GRGKQVIAV 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCC-----CCccEEEEE
Confidence 3899999999999999999988643 3555667777777777778899999999999986532110 112334456
Q ss_pred cccccEEEEEEeCCCCCCCc--------------------------------------HH-HHH----------------
Q 020714 220 VNLFEVLMVVFDVHRHLTSP--------------------------------------DS-RVI---------------- 244 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~--------------------------------------~~-~~~---------------- 244 (322)
.+.|.++++|+|+..+.+.. +. .+.
T Consensus 134 artcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr 213 (358)
T KOG1487|consen 134 ARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALR 213 (358)
T ss_pred eecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeee
Confidence 68889999999986543220 00 011
Q ss_pred ------HHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 245 ------RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 245 ------~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.++..+..... -+|.+.++||+|...-++ +.-.+..+..+++||.+++|++++++.+.+.+.
T Consensus 214 ~DaT~DdLIdvVegnr~-yVp~iyvLNkIdsISiEE--------Ldii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 214 FDATADDLIDVVEGNRI-YVPCIYVLNKIDSISIEE--------LDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cCcchhhhhhhhccCce-eeeeeeeecccceeeeec--------cceeeeccceeecccccccchHHHHHHHhhcch
Confidence 11111111100 267889999999765321 222345567899999999999999999887654
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.3e-10 Score=102.61 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC------------------CccEEEEeCCCcccC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------------DTQICIFDTPGLMLN 200 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~DtpG~~~~ 200 (322)
.++++|||.||||||||.|+++... +...+.|.+|.++..+..... ...+.|+|.+|+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999999999999988 778889999988777653221 124689999999854
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~ 234 (322)
.+ .+ . -.-.+.+..++.+|++++|+|++.
T Consensus 81 As-~G-e---GLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 AS-KG-E---GLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cc-cC-C---CcchHHHHhhhhcCeEEEEEEecC
Confidence 32 11 0 112455678899999999999873
No 320
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.17 E-value=2.4e-10 Score=90.19 Aligned_cols=166 Identities=15% Similarity=0.210 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
-.++|+++|.+.+|||||+-...+....+ .....|.........+......+.+||..|..++..-.+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP----------- 87 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP----------- 87 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc-----------
Confidence 46899999999999999998888765432 122233322222222222345668999999986544222
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC--h---hHHHHHHHHHhcCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--K---KDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~--~---~~~~~~~~~~~~~~~~~~ 291 (322)
-....+-+++++||.+++.+. ..+..|.+.....+..-+| |+|++|-|+.-. . ..+....+.+++.... +
T Consensus 88 -iac~dsvaIlFmFDLt~r~TL--nSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-s 162 (205)
T KOG1673|consen 88 -IACKDSVAILFMFDLTRRSTL--NSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-S 162 (205)
T ss_pred -eeecCcEEEEEEEecCchHHH--HHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-c
Confidence 235677889999999876544 3466676666554443333 678999997532 1 1222233444444433 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
.|+||+....|++.+|..+...+....+
T Consensus 163 L~F~Sts~sINv~KIFK~vlAklFnL~~ 190 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLAKLFNLPW 190 (205)
T ss_pred EEEeeccccccHHHHHHHHHHHHhCCce
Confidence 9999999999999999999988876544
No 321
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.8e-10 Score=109.50 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=102.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee-----ecCCCCceeeeEEEE------------EeeCCccEEEEeCCCccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKTNTTTHEVLGV------------MTKADTQICIFDTPGLML 199 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-----~~~~~~~t~~~~~~~------------~~~~~~~~~l~DtpG~~~ 199 (322)
-+.+.|+|+|.-.+|||-|+..+.+..+.. .....|.|......+ ....-..+.++||||...
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 355677899999999999999998765432 111222222211100 011234689999999876
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC-----hh
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KK 274 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~-----~~ 274 (322)
|..... .....||++|+|+|+.++...+......+|+. .+.|+|+.+||+|.... ..
T Consensus 553 FtnlRs------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~------rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 553 FTNLRS------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRM------RKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hhhhhh------------ccccccceEEEEeehhccCCcchhHHHHHHHh------cCCCeEEeehhhhhhcccccCCCc
Confidence 543111 23467899999999988765554444444443 25679999999998742 00
Q ss_pred ------------H-------HHHHHHHHhcC-------------CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 275 ------------D-------LLKVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 275 ------------~-------~~~~~~~~~~~-------------~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
. +..++..|+.+ ..+..++++||.+|+||.+|+-+|++....
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 0 11122222221 122358999999999999999999987654
No 322
>PTZ00416 elongation factor 2; Provisional
Probab=99.16 E-value=3.9e-10 Score=115.19 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=75.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC---------------CceeeeEEEEEeeC----------CccEEE
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTKA----------DTQICI 191 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~~----------~~~~~l 191 (322)
.+..+|+++|..++|||||+++|+...-....... |.|.......+... +..+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34558999999999999999999853211111111 22222211112222 456899
Q ss_pred EeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
+||||+..+ ...+...+..+|++|+|+|+..+...+...+...+... +.|+++++||+|+.
T Consensus 97 iDtPG~~~f------------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF------------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE------RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH------------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc------CCCEEEEEEChhhh
Confidence 999998753 22344557888999999999887766665554444332 35799999999997
No 323
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.15 E-value=1.3e-10 Score=96.62 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe---eCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT---KADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..|+++|++|+|||+|...|..+....+- |......... ..+..+.++|+||...-.. .+...
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-----tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~---------~~~~~ 69 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-----TSMENNIAYNVNNSKGKKLRLVDIPGHPRLRS---------KLLDE 69 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCCH---------HHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCee-----ccccCCceEEeecCCCCEEEEEECCCcHHHHH---------HHHHh
Confidence 45899999999999999999876432211 1111111111 2456899999999864321 22222
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHH----HHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI----ERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l----~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+.....+.+||+|+|.+.-. ..-..+.++| ...... ....|++++.||.|+...
T Consensus 70 ~~~~~~~k~IIfvvDSs~~~-~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSSTDQ-KELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred hhchhhCCEEEEEEeCccch-hhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence 23467789999999985311 1112333333 222211 235789999999999865
No 324
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.14 E-value=5e-10 Score=113.21 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=73.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC---------------CCCceeeeEEEEEe----eCCccEEEEeCCCc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR---------------KTNTTTHEVLGVMT----KADTQICIFDTPGL 197 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~----~~~~~~~l~DtpG~ 197 (322)
.+.-+|+++|..++|||||+++|+...-..... .-|.|.......+. ..+..+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 345679999999999999999987421110000 01222222211111 13567889999999
Q ss_pred ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
..+. ..+...+..+|++++|+|+..+...+...+....... +.|.|+++||+|+..
T Consensus 98 ~df~------------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFG------------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE------RVKPVLFINKVDRLI 153 (731)
T ss_pred cChH------------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc------CCCeEEEEECchhhc
Confidence 7641 2233445777999999999877655554444433322 245799999999863
No 325
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.4e-10 Score=104.24 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC---------------------C-ee--e------eecCCCCceeeeEEEEEeeCCc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG---------------------T-KV--A------AVSRKTNTTTHEVLGVMTKADT 187 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~---------------------~-~~--~------~~~~~~~~t~~~~~~~~~~~~~ 187 (322)
..+.++++|...+|||||+.+|+- + .+ + ......|+|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 568899999999999999988752 0 00 0 1223346777766666766778
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCcE
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKR 260 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p~ 260 (322)
.++|+|+||+..|-+ .++.....+|+.++|+|++.+. ..+..+...+++.++.. ..
T Consensus 256 ~~tliDaPGhkdFi~------------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~-----ql 318 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP------------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS-----QL 318 (603)
T ss_pred eEEEecCCCccccch------------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc-----eE
Confidence 899999999876643 4445667789999999997542 22334566677777743 38
Q ss_pred EEEEeCCCCCCChhH-HHH---HHHHHh-cCCCC----CcEEEeecCCCCCHHHH
Q 020714 261 VLCMNKVDLVTKKKD-LLK---VAEQFK-HLPGY----ERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 261 ivV~NK~Dl~~~~~~-~~~---~~~~~~-~~~~~----~~~~~iSa~~g~gi~el 306 (322)
|+++||+|++.-.++ .++ ....|. +..|+ ..+++||+.+|+|+-..
T Consensus 319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999999999864332 222 222222 33333 26899999999998654
No 326
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.12 E-value=2e-09 Score=99.18 Aligned_cols=159 Identities=18% Similarity=0.288 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe--------ee-------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK--------VA-------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~--------~~-------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 204 (322)
-+|+++-.-.-|||||+..|+... +. .....-|.|.-.....+.+.+..+.++||||.-.|...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE- 84 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE- 84 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch-
Confidence 468899999999999999987531 10 01112244443333345567889999999999877541
Q ss_pred ChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh--hHHHHHHHH
Q 020714 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQ 282 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~~~~ 282 (322)
++ ..+...|.+++++|+..+.--+...+..- .+.. +.+-|+|+||+|....+ .+.++..+.
T Consensus 85 --------VE---Rvl~MVDgvlLlVDA~EGpMPQTrFVlkK--Al~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDL 147 (603)
T COG1217 85 --------VE---RVLSMVDGVLLLVDASEGPMPQTRFVLKK--ALAL----GLKPIVVINKIDRPDARPDEVVDEVFDL 147 (603)
T ss_pred --------hh---hhhhhcceEEEEEEcccCCCCchhhhHHH--HHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 12 33566799999999988776665543332 2221 23368999999998764 344454555
Q ss_pred HhcC------CCCCcEEEeecCCCC----------CHHHHHHHHHHHhhhc
Q 020714 283 FKHL------PGYERIFMTSGLKGA----------GLKALTQYLMEQFKDL 317 (322)
Q Consensus 283 ~~~~------~~~~~~~~iSa~~g~----------gi~el~~~i~~~l~~~ 317 (322)
|..+ ..+ |+++.|++.|. ++.-||+.|.+++..-
T Consensus 148 f~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 148 FVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred HHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 5433 344 69999999986 7889999999988754
No 327
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.11 E-value=3.5e-10 Score=114.05 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=73.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe---------------eeeecCCCCceeeeEEE----EEeeCCccEEEEeCCCcc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK---------------VAAVSRKTNTTTHEVLG----VMTKADTQICIFDTPGLM 198 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~---------------~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~DtpG~~ 198 (322)
...+|+++|..++|||||+++|+... ........+.|...... .....+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 46789999999999999999986420 00000112333322211 123446788999999997
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
.+. ..+...+..+|++++|+|+..+...+...+...... . +.|.++|+||+|...
T Consensus 98 ~f~------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~---~---~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFG------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK---E---NVKPVLFINKVDRLI 152 (720)
T ss_pred ccH------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH---c---CCCEEEEEEChhccc
Confidence 642 123345677899999999977655544433333222 1 356889999999874
No 328
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.09 E-value=5.2e-10 Score=96.87 Aligned_cols=170 Identities=19% Similarity=0.154 Sum_probs=103.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecC-CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVR 212 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~ 212 (322)
..+...+++.|.+|||||+|||.++..+... .+. .+|.|.... ....+..++++|.||.....-+.. .++....
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in---~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAIN---HFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeee---eeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3456889999999999999999998765332 222 455554333 335678899999999543321111 1222222
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-----HHHHHHHHHhcC-
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----DLLKVAEQFKHL- 286 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-----~~~~~~~~~~~~- 286 (322)
...++.+-..--.+++.+|++.+....+...+.|+.+. ++|+.+|+||||...... ........+..+
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc------CCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 33333332333446667888777666666666676663 467999999999875421 011111111111
Q ss_pred ---C-CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 287 ---P-GYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 287 ---~-~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
+ ...|.+.+|+.++.|+++|+-.|.+..
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhhh
Confidence 1 112567899999999999987776543
No 329
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.6e-10 Score=92.23 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=103.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+++++++|..|.||+|++++.+.+.+.. .....|...+.....-..+..++..|||.|++.+.....
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd----------- 77 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD----------- 77 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc-----------
Confidence 47899999999999999999977665543 334445444443322222236789999999986543111
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
-.+=.....+++||+....+-.+ +..|-+.+... ..++|+++++||.|........+ .-.+-....+ +++++|
T Consensus 78 -gyyI~~qcAiimFdVtsr~t~~n--~~rwhrd~~rv-~~NiPiv~cGNKvDi~~r~~k~k--~v~~~rkknl-~y~~iS 150 (216)
T KOG0096|consen 78 -GYYIQGQCAIIMFDVTSRFTYKN--VPRWHRDLVRV-RENIPIVLCGNKVDIKARKVKAK--PVSFHRKKNL-QYYEIS 150 (216)
T ss_pred -ccEEecceeEEEeeeeehhhhhc--chHHHHHHHHH-hcCCCeeeeccceeccccccccc--cceeeecccc-eeEEee
Confidence 12233467888899976554433 44444444322 12578999999999876431111 1111122223 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|+++.|.+.-|-|+.+.+..
T Consensus 151 aksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 151 AKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred cccccccccchHHHhhhhcC
Confidence 99999999999999988754
No 330
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.2e-09 Score=88.52 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.-.|.++|+.++|||+|.-.|..+.... .-+......+.+..++....++|.||... .+..+...+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~----TvtSiepn~a~~r~gs~~~~LVD~PGH~r---------lR~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRG----TVTSIEPNEATYRLGSENVTLVDLPGHSR---------LRRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccC----eeeeeccceeeEeecCcceEEEeCCCcHH---------HHHHHHHHcc
Confidence 3469999999999999998887653211 11111122333445566689999999853 2222222222
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc---CCCCCcEEEEEeCCCCCCCh--hH----HHHHHHHHh-----
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKK--KD----LLKVAEQFK----- 284 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~---~~~~~p~ivV~NK~Dl~~~~--~~----~~~~~~~~~----- 284 (322)
.-..+-++++|+|...-... -..+.+++-.+-.. .....|++++.||.|+..+. +. ++.++..+.
T Consensus 105 ~~~~akaiVFVVDSa~f~k~-vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa 183 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSATFLKN-VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSA 183 (238)
T ss_pred ccccceeEEEEEeccccchh-hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 22367899999998532211 12344443332221 12346799999999997642 11 111111110
Q ss_pred -------------------------cCC-CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 285 -------------------------HLP-GYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 285 -------------------------~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
... ....+.++|+++| +++++-+||.+++
T Consensus 184 ~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 184 LRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred hhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 111 1124788999999 9999999998764
No 331
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.8e-09 Score=95.17 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=102.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee-------------------ecCCCCce---eeeEEEEEeeCC------cc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-------------------VSRKTNTT---THEVLGVMTKAD------TQ 188 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-------------------~~~~~~~t---~~~~~~~~~~~~------~~ 188 (322)
...++|+.+|.---|||||..+|.|--... ....+.+. ...+...+...+ ..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 356899999999999999999998721110 01111111 111111111111 35
Q ss_pred EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
+.|+|.||.+ ..++ .++.-..-.|+.++|++++.++-.+.. +-...++-++. +.+|+|-||+
T Consensus 88 VSfVDaPGHe--------~LMA----TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi-----k~iiIvQNKI 150 (415)
T COG5257 88 VSFVDAPGHE--------TLMA----TMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI-----KNIIIVQNKI 150 (415)
T ss_pred EEEeeCCchH--------HHHH----HHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc-----ceEEEEeccc
Confidence 6799999975 2232 233344555999999999887766543 22233444443 3489999999
Q ss_pred CCCCChhHH---HHHHHHHhcC-CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 268 DLVTKKKDL---LKVAEQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 268 Dl~~~~~~~---~~~~~~~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
|++..+... +++.+.+... -...|++++||..+.||+.|+++|.+.+..-
T Consensus 151 DlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 151 DLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred ceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 999865432 2322333222 1234899999999999999999999988754
No 332
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.06 E-value=1.3e-09 Score=111.57 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=75.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC---------------CceeeeEEEEEee----------------
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTK---------------- 184 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~---------------- 184 (322)
..+..+|+++|..++|||||+++|+...-....... |.|.......+..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345678999999999999999998743211001111 2222221111212
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..+.|+||||+..| ...+...+..+|++|+|+|+..+...+...+...... . +.|+++++
T Consensus 96 ~~~~inliDtPGh~dF------------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~---~---~~p~i~~i 157 (843)
T PLN00116 96 NEYLINLIDSPGHVDF------------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---E---RIRPVLTV 157 (843)
T ss_pred CceEEEEECCCCHHHH------------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH---C---CCCEEEEE
Confidence 2456789999998754 2333455678899999999987766655544443332 2 45799999
Q ss_pred eCCCCC
Q 020714 265 NKVDLV 270 (322)
Q Consensus 265 NK~Dl~ 270 (322)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999998
No 333
>PRK01889 GTPase RsgA; Reviewed
Probab=99.06 E-value=1.9e-10 Score=106.58 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=90.3
Q ss_pred CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC-hhhHHHHHHhhCCeEEEeec-cccchhhh
Q 020714 44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ-EPTWDEKYRERTDRIVFGEE-AQKGKLRI 100 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~-~~~w~~~~~~~~~~i~f~~~-~~~~~~~~ 100 (322)
.++|.++-+.++. |.+. . ||+||++... ...|...+ ..++.+++.++ ++.+...+
T Consensus 111 ANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 111 ANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVL 188 (356)
T ss_pred EeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHH
Confidence 3678776666665 3333 2 8999987521 22333333 45678888888 77776665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCCc
Q 020714 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNT 173 (322)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~~ 173 (322)
. .. + ..+-+++++|.+|+|||||+|.|.+......+. ..++
T Consensus 189 ~--------------~~----L--------------~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t 236 (356)
T PRK01889 189 A--------------AW----L--------------SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT 236 (356)
T ss_pred H--------------HH----h--------------hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch
Confidence 1 11 1 123468999999999999999998754332221 1223
Q ss_pred eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
|.......+.. ...++||||+..+............|......... |.+-|. .+..++.+.+...++.
T Consensus 237 t~~~~l~~l~~---~~~l~DtpG~~~~~l~~~~~~l~~~f~~~~~~~~~----c~f~~c-~h~~E~~c~v~~a~~~ 304 (356)
T PRK01889 237 TTHRELHPLPS---GGLLIDTPGMRELQLWDAEDGVEETFSDIEELAAQ----CRFRDC-AHEAEPGCAVQAAIEN 304 (356)
T ss_pred hhhccEEEecC---CCeecCCCchhhhcccCchhhHHHhHHHHHHHHcc----CCCCCC-CCCCCCCChHHHHHHc
Confidence 43333322222 23788999997655432222222333322222222 222233 4445666666655543
No 334
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.04 E-value=3.1e-11 Score=98.01 Aligned_cols=165 Identities=21% Similarity=0.172 Sum_probs=113.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
.-+++.|+|+-||||++++.+.+...+.. .....|+.+. ..++..+ -.++.|||..|+..+...
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfa--lkVl~wdd~t~vRlqLwdIagQerfg~m---------- 91 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFA--LKVLQWDDKTIVRLQLWDIAGQERFGNM---------- 91 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHH--HHHhccChHHHHHHHHhcchhhhhhcce----------
Confidence 35678999999999999999876533221 1111222111 1112222 246789999999865431
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc----ccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHHhcCCC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG----KQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPG 288 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~----~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~~~~~~ 288 (322)
+--.++.+.+..+|||+++..+++. +..|.+.+. .......|+++..||||+.+... ........+.+.++
T Consensus 92 --trVyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~keng 167 (229)
T KOG4423|consen 92 --TRVYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENG 167 (229)
T ss_pred --EEEEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccC
Confidence 1134678899999999988766643 455555543 34444588999999999976432 22355677888899
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 289 YERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+...+++|+|.+.+++|.-+.+++.+..+.
T Consensus 168 f~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 168 FEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred ccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 999999999999999999999999876653
No 335
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.4e-08 Score=90.43 Aligned_cols=164 Identities=19% Similarity=0.327 Sum_probs=97.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCC-----CceeeeEEEEEe-e------C--CccEEEEeCCCcccCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKT-----NTTTHEVLGVMT-K------A--DTQICIFDTPGLMLNK 201 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~-----~~t~~~~~~~~~-~------~--~~~~~l~DtpG~~~~~ 201 (322)
+..+++++.|.-.+|||||..+|..-. .+.-...| |.|.+.-...+. . . .-.+.++|+||..
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa--- 81 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA--- 81 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence 345899999999999999999986421 11111112 222221111010 1 1 1246899999974
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh---hHHHH
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLK 278 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~---~~~~~ 278 (322)
.. ++..+....--|+.++|+|+..+..-+..+ ...+.++. ....++|+||+|..+.. ..++.
T Consensus 82 -----sL----IRtiiggaqiiDlm~lviDv~kG~QtQtAE-cLiig~~~-----c~klvvvinkid~lpE~qr~ski~k 146 (522)
T KOG0461|consen 82 -----SL----IRTIIGGAQIIDLMILVIDVQKGKQTQTAE-CLIIGELL-----CKKLVVVINKIDVLPENQRASKIEK 146 (522)
T ss_pred -----HH----HHHHHhhhheeeeeeEEEehhcccccccch-hhhhhhhh-----ccceEEEEeccccccchhhhhHHHH
Confidence 22 222233344559999999997654333211 12233322 23489999999987652 22333
Q ss_pred HHHHHh------cCCCCCcEEEeecCCC----CCHHHHHHHHHHHhhhcC
Q 020714 279 VAEQFK------HLPGYERIFMTSGLKG----AGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 279 ~~~~~~------~~~~~~~~~~iSa~~g----~gi~el~~~i~~~l~~~~ 318 (322)
....+. ...+..|++++||+.| ++|.+|.+.|...+..-.
T Consensus 147 ~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 147 SAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 222222 2345568999999999 899999999988876543
No 336
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.02 E-value=4e-09 Score=94.46 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecC--------C-CCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCC-h
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------K-TNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYS-H 206 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~--------~-~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~-~ 206 (322)
.++|+|+|.+|+|||||||.|++........ . ...........+...+ ..+.++||||+........ .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999865433320 1 1111222222233333 3578999999975433211 1
Q ss_pred hh----HHHHHHHHHhhc----------ccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 207 KD----VKVRVESAWSAV----------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 207 ~~----~~~~~~~~~~~~----------~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
.. +...+...+..- ...|+++|+++.+.+ ....+. ..++.+.. .+++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di---~~mk~Ls~----~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI---EFMKRLSK----RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH---HHHHHHTT----TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH---HHHHHhcc----cccEEeEEecccccC
Confidence 11 222333333311 345999999998643 232232 44555553 356999999999987
Q ss_pred Ch
Q 020714 272 KK 273 (322)
Q Consensus 272 ~~ 273 (322)
..
T Consensus 157 ~~ 158 (281)
T PF00735_consen 157 PE 158 (281)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.89 E-value=1.3e-08 Score=83.46 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=68.5
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
.|..+..+|++++|+|++.+....+..+...+... ..++|+++|+||+|+.+. .....+...+.+.+... ++++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~-~~~~~~~~~~~~~~~~~-~~~i 75 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE----KPHKHLIFVLNKCDLVPT-WVTARWVKILSKEYPTI-AFHA 75 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc----cCCCCEEEEEEchhcCCH-HHHHHHHHHHhcCCcEE-EEEe
Confidence 35667889999999999877655555565655542 224689999999999754 33445566665554432 6889
Q ss_pred ecCCCCCHHHHHHHHHHHh
Q 020714 296 SGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l 314 (322)
||++|.|+++++++|.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999998765
No 338
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.4e-08 Score=91.22 Aligned_cols=136 Identities=20% Similarity=0.362 Sum_probs=82.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-------------C------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-------------A------------------ 185 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~------------------ 185 (322)
....-|+++|+-..||||+|+.|+..+++.....+..|.+.-..++.. +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 345678999999999999999999887664333232222211111100 0
Q ss_pred ----------CccEEEEeCCCcccCCC-----CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 020714 186 ----------DTQICIFDTPGLMLNKS-----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250 (322)
Q Consensus 186 ----------~~~~~l~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~ 250 (322)
=..+.++||||+..... ++.+....+.| ...||.|+++||+.. -+...+....+..+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WF------aeR~D~IiLlfD~hK--LDIsdEf~~vi~aL 207 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWF------AERVDRIILLFDAHK--LDISDEFKRVIDAL 207 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHH------HHhccEEEEEechhh--ccccHHHHHHHHHh
Confidence 03578999999974322 23333322222 367899999999832 22223455666666
Q ss_pred cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH
Q 020714 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF 283 (322)
Q Consensus 251 ~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~ 283 (322)
+.... .+-+|+||.|.++..+-+.-....+
T Consensus 208 kG~Ed---kiRVVLNKADqVdtqqLmRVyGALm 237 (532)
T KOG1954|consen 208 KGHED---KIRVVLNKADQVDTQQLMRVYGALM 237 (532)
T ss_pred hCCcc---eeEEEeccccccCHHHHHHHHHHHH
Confidence 65533 3889999999988655443333333
No 339
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=5.9e-08 Score=84.83 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=107.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC----------eeeeec-----CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT----------KVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~----------~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
.+..++|+.+|.-+-|||||..+++.- .+.+.. ...|.|..+....+...+..+-.+|+||.-.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD- 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD- 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-
Confidence 345789999999999999998887531 111222 2236777777666667778889999999753
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH---
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL--- 277 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~--- 277 (322)
.+++.+.-....|..|+|+.+.++.--+...-..+.+.++.. .+++++||+|++++.+-++
T Consensus 88 -----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp-----~ivvflnK~Dmvdd~ellelVe 151 (394)
T COG0050 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVP-----YIVVFLNKVDMVDDEELLELVE 151 (394)
T ss_pred -----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCc-----EEEEEEecccccCcHHHHHHHH
Confidence 456666666778999999999887655554444444554432 3889999999998654332
Q ss_pred HHHHHHhcCCCCC----cEEEeecCC-CCC-------HHHHHHHHHHHhh
Q 020714 278 KVAEQFKHLPGYE----RIFMTSGLK-GAG-------LKALTQYLMEQFK 315 (322)
Q Consensus 278 ~~~~~~~~~~~~~----~~~~iSa~~-g~g-------i~el~~~i~~~l~ 315 (322)
.+...+...++++ |++.-||.. .+| |.+|++++...+.
T Consensus 152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 2334444445543 667767653 232 4666666655544
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.84 E-value=1.7e-07 Score=84.74 Aligned_cols=130 Identities=14% Similarity=0.213 Sum_probs=77.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeee----cCC-----CCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV----SRK-----TNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS 205 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~----~~~-----~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~ 205 (322)
.-.++|+++|++|.|||||+|.|++...... ... +..........+..++. .+.++|||||..+-....
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5689999999999999999999998643221 111 11122222223333343 578999999987755332
Q ss_pred h-hh----HHHHHHHHHhhc-----------ccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714 206 H-KD----VKVRVESAWSAV-----------NLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (322)
Q Consensus 206 ~-~~----~~~~~~~~~~~~-----------~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D 268 (322)
. .. +...+...+..- ...++++|++..+.+. ...+. ..++.+.. .+.+|-|+.|+|
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI---e~Mk~ls~----~vNlIPVI~KaD 173 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI---EAMKRLSK----RVNLIPVIAKAD 173 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH---HHHHHHhc----ccCeeeeeeccc
Confidence 1 12 223333333311 4458999999875543 33332 23333332 244899999999
Q ss_pred CCCCh
Q 020714 269 LVTKK 273 (322)
Q Consensus 269 l~~~~ 273 (322)
....+
T Consensus 174 ~lT~~ 178 (373)
T COG5019 174 TLTDD 178 (373)
T ss_pred cCCHH
Confidence 98753
No 341
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.2e-07 Score=86.32 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=78.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee------ecCCCCc--eeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA------VSRKTNT--TTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS 205 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~------~~~~~~~--t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~ 205 (322)
..-.+.++++|.+|.|||||||.|+...... ....+.. +.......+..+|. +++++||||+.+.-....
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 3446899999999999999999998763321 1112211 22222223333443 568999999986543221
Q ss_pred -----hhhHHHHHHHHHhhc----------ccccEEEEEEeCCCC-CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714 206 -----HKDVKVRVESAWSAV----------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269 (322)
Q Consensus 206 -----~~~~~~~~~~~~~~~----------~~ad~ii~v~D~s~~-~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl 269 (322)
...+...+.+.+..- ...++++|++..+.+ ....+... ++.+.. .+.+|-|+.|+|.
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~---Mk~l~~----~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF---MKKLSK----KVNLIPVIAKADT 170 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHH---HHHHhc----cccccceeecccc
Confidence 122333444444321 356899999998655 33333333 333332 3558999999999
Q ss_pred CCCh
Q 020714 270 VTKK 273 (322)
Q Consensus 270 ~~~~ 273 (322)
....
T Consensus 171 lT~~ 174 (366)
T KOG2655|consen 171 LTKD 174 (366)
T ss_pred CCHH
Confidence 8764
No 342
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.1e-08 Score=97.41 Aligned_cols=119 Identities=21% Similarity=0.314 Sum_probs=82.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC-----eeeeec------------CCCCceeeeEEEEEeeCC-ccEEEEeCCCcc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKAD-TQICIFDTPGLM 198 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~------------~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~ 198 (322)
.+.-+|+++|.-.+|||||..+|+-. +...+. ..-|.|.......+.+.+ ..+.|+||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 35568999999999999999998621 111111 112455555544566664 899999999999
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK 273 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~ 273 (322)
+|.. .+. ..++.+|++++|+|+..+...+.+.+.+..... ++|.++++||+|....+
T Consensus 88 DFt~---------EV~---rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 88 DFTI---------EVE---RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY------GVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccHH---------HHH---HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc------CCCeEEEEECccccccC
Confidence 7743 122 334556999999999887766665555554443 46799999999998653
No 343
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-08 Score=83.40 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH-
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW- 217 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~- 217 (322)
-||.++|.+|+|||++-..+.....+.-...+|.|.+....... .++.-+.+||+.|+..+ +...+....
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f--------men~~~~q~d 76 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF--------MENYLSSQED 76 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH--------HHHHHhhcch
Confidence 47999999999999987666655444444556666665554433 34467789999998732 222222111
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHH-HHHHhcccCCCCCcEEEEEeCCCCCCCh
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIR-LIERMGKQAPPKQKRVLCMNKVDLVTKK 273 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~-~l~~~~~~~~~~~p~ivV~NK~Dl~~~~ 273 (322)
..+...+++++|||++...-+.+..... -++.+ .+..|...+.+.+.|.|++...
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~l-l~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEAL-LQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHH-HhcCCcceEEEEEeechhcccc
Confidence 2357889999999997654443332222 23333 3456678899999999998753
No 344
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.74 E-value=8.6e-08 Score=84.39 Aligned_cols=88 Identities=20% Similarity=0.310 Sum_probs=63.7
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+.++|.+++|+|+.++.... ..+..|+..+.. .+.|+++|+||+||........+....+.. .+. +++++||+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~-~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~-~v~~~SAk 106 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSL-NQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGY-QVLMTSSK 106 (245)
T ss_pred ccccCCEEEEEEECCCCCCCH-HHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCC-eEEEEecC
Confidence 467889999999997654322 335566655543 357799999999997654444344555554 455 69999999
Q ss_pred CCCCHHHHHHHHHH
Q 020714 299 KGAGLKALTQYLME 312 (322)
Q Consensus 299 ~g~gi~el~~~i~~ 312 (322)
+|.|++++++.+..
T Consensus 107 tg~gi~eLf~~l~~ 120 (245)
T TIGR00157 107 NQDGLKELIEALQN 120 (245)
T ss_pred CchhHHHHHhhhcC
Confidence 99999999998764
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=2.2e-08 Score=92.09 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS 202 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 202 (322)
++++++|.||+|||||.|+|++.....+...|.+|.....+.....+ ..+.+.|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 68999999999999999999998864667778888877776654433 2578999999986422
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCC
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s 233 (322)
.- . ..-...+..++.+|++++|+|+.
T Consensus 83 ~g--~---Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KG--E---GLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cc--c---CcchHHHHHHHhCCEEEEEEeCC
Confidence 10 0 01234556788899999999985
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=9.3e-08 Score=80.91 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=57.5
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHH---HHHHHH-hcCC--CCCcE
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL---KVAEQF-KHLP--GYERI 292 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~---~~~~~~-~~~~--~~~~~ 292 (322)
.+..+|++++|+|+++........+ .. . ..+.|+++|+||+|+........ .+.... .... +..++
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~~~l----~~-~---~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLIPRL----RL-F---GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDV 102 (190)
T ss_pred cccCCcEEEEEEECccCCCccchhH----HH-h---cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccE
Confidence 4588899999999976543332222 11 1 12468999999999975432211 111001 0111 22368
Q ss_pred EEeecCCCCCHHHHHHHHHHHhh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+++||++|.|+++|+++|.+.+.
T Consensus 103 ~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 103 ILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 347
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.69 E-value=1.3e-06 Score=82.18 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=80.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCc----------e-ee--eEEEEEe--------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNT----------T-TH--EVLGVMT-------------- 183 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~----------t-~~--~~~~~~~-------------- 183 (322)
..+..|+++|.+||||||++..|. +.++..+...+.. . .. .......
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346788999999999999998875 3344333322210 0 00 0010000
Q ss_pred --eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714 184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (322)
Q Consensus 184 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (322)
..+.++.|+||||..... ......+.... .....+.+++|+|+..+. +. ....+.+.... .+.-
T Consensus 178 ~~~~~~DvViIDTaGr~~~d-----~~lm~El~~i~-~~~~p~e~lLVlda~~Gq---~a--~~~a~~F~~~~---~~~g 243 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQE-----DSLFEEMLQVA-EAIQPDNIIFVMDGSIGQ---AA--EAQAKAFKDSV---DVGS 243 (429)
T ss_pred HHhCCCCEEEEECCCCCcch-----HHHHHHHHHHh-hhcCCcEEEEEeccccCh---hH--HHHHHHHHhcc---CCcE
Confidence 025689999999975321 22222233332 234568899999986432 11 22334443221 2468
Q ss_pred EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
+|+||.|............... +. |+.+++ +|++++++
T Consensus 244 ~IlTKlD~~argG~aLs~~~~t----~~-PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 244 VIITKLDGHAKGGGALSAVAAT----KS-PIIFIG--TGEHIDDF 281 (429)
T ss_pred EEEECccCCCCccHHhhhHHHH----CC-CeEEEc--CCCChhhc
Confidence 9999999865433332222221 22 466666 56666655
No 348
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=1.2e-06 Score=74.56 Aligned_cols=128 Identities=19% Similarity=0.276 Sum_probs=74.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeec-------CCCCcee-eeEEEEEeeCCc--cEEEEeCCCcccCCCCCCh-
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTT-HEVLGVMTKADT--QICIFDTPGLMLNKSGYSH- 206 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-------~~~~~t~-~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~- 206 (322)
-.|+|++||.+|.|||||+|.|...++...+ +.+.|+. ......+...+. ++.++|||||...-.....
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 3689999999999999999999865443322 2222222 222333434444 5689999999865332110
Q ss_pred ----hhHHHHHHHHHhh---------c--ccccEEEEEEeCCCCCCCc-HHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 207 ----KDVKVRVESAWSA---------V--NLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 207 ----~~~~~~~~~~~~~---------~--~~ad~ii~v~D~s~~~~~~-~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
..+.+.+.+.+.. + ...++++|++..+.+.-.. +.+++.-|.++ +.++-|+-|+|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeecccc
Confidence 1112222222221 1 4457888888887665443 23444433332 2389999999977
Q ss_pred CC
Q 020714 271 TK 272 (322)
Q Consensus 271 ~~ 272 (322)
.-
T Consensus 198 Tl 199 (336)
T KOG1547|consen 198 TL 199 (336)
T ss_pred cH
Confidence 54
No 349
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.67 E-value=1.8e-07 Score=81.22 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC--eeeeecCCCCceeeeEEEEEee---CCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
....|+|+|++++|||+|+|.|++. .+........+|+..+...... .+..+.++||||+....... .....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~-- 82 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDA-- 82 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhh--
Confidence 3456899999999999999999998 6655555567777666544333 25789999999997554322 01111
Q ss_pred HHHHHhhcccccEEEEEEeCC
Q 020714 213 VESAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s 233 (322)
...++..+ -++++|+..+..
T Consensus 83 ~~~~l~~l-lss~~i~n~~~~ 102 (224)
T cd01851 83 RLFALATL-LSSVLIYNSWET 102 (224)
T ss_pred HHHHHHHH-HhCEEEEeccCc
Confidence 11111111 368888888764
No 350
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.66 E-value=1.9e-07 Score=76.40 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=59.4
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..+|++++|+|++.+....+..+...+.. . +.|+++|+||+|+.... ...... .+....+. +++++||++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~---~---~~p~iiv~NK~Dl~~~~-~~~~~~-~~~~~~~~-~~~~iSa~~ 80 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLE---L---GKKLLIVLNKADLVPKE-VLEKWK-SIKESEGI-PVVYVSAKE 80 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHh---C---CCcEEEEEEhHHhCCHH-HHHHHH-HHHHhCCC-cEEEEEccc
Confidence 356899999999976555444333333221 1 46799999999996532 222222 22222333 689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 020714 300 GAGLKALTQYLMEQFKD 316 (322)
Q Consensus 300 g~gi~el~~~i~~~l~~ 316 (322)
|.|+++|++.|.+.+..
T Consensus 81 ~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 81 RLGTKILRRTIKELAKI 97 (156)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999988754
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=2.9e-07 Score=76.55 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC
Q 020714 208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP 287 (322)
Q Consensus 208 ~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~ 287 (322)
++.....+.+..+..+|++++|+|++.+....+..+ +..+. ++|.++|+||+|+... .........+...
T Consensus 5 ~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i---~~~~~-----~k~~ilVlNK~Dl~~~-~~~~~~~~~~~~~- 74 (171)
T cd01856 5 HMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLL---EKILG-----NKPRIIVLNKADLADP-KKTKKWLKYFESK- 74 (171)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhh---HhHhc-----CCCEEEEEehhhcCCh-HHHHHHHHHHHhc-
Confidence 356667788888999999999999976554433322 22221 3579999999999653 2222232333322
Q ss_pred CCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 288 GYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 288 ~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
+ .+++.+||++|.|++++.+.|...+
T Consensus 75 ~-~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 G-EKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred C-CeEEEEECCCcccHHHHHHHHHHHH
Confidence 2 3589999999999999999998875
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=4.7e-07 Score=81.24 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 207 ~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
.++....++....+..+|++++|+|+..+.+..+..+...+ . ++|+++|+||+|+.+. .....+...+..
T Consensus 6 gHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l---~-----~kp~IiVlNK~DL~~~-~~~~~~~~~~~~- 75 (276)
T TIGR03596 6 GHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR---G-----NKPRLIVLNKADLADP-AVTKQWLKYFEE- 75 (276)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH---C-----CCCEEEEEEccccCCH-HHHHHHHHHHHH-
Confidence 34566677788889999999999999776665554443333 1 4679999999999653 223334444433
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.+. +++.+||++|.|+++|.+.|.+.+.+
T Consensus 76 ~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 KGI-KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred cCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 232 58999999999999999999887754
No 353
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.4e-07 Score=85.18 Aligned_cols=114 Identities=18% Similarity=0.336 Sum_probs=74.9
Q ss_pred EEEEEcCCCCchhHHHHHHh--CCeee-------------------eecCCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714 141 AVGIIGAPNAGKSSIINYMV--GTKVA-------------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~--~~~~~-------------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 199 (322)
..+|+..|.+|||||-..|+ |+.+. .....-|....+..-.+.+.+..+.|+||||...
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 47899999999999998765 22110 0111122223333333667788999999999987
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
|.. .++.-+..+|..++|+|+..+... +..++.+..+.. +.|++-.+||.|....
T Consensus 94 FSE------------DTYRtLtAvDsAvMVIDaAKGiE~---qT~KLfeVcrlR---~iPI~TFiNKlDR~~r 148 (528)
T COG4108 94 FSE------------DTYRTLTAVDSAVMVIDAAKGIEP---QTLKLFEVCRLR---DIPIFTFINKLDREGR 148 (528)
T ss_pred cch------------hHHHHHHhhheeeEEEecccCccH---HHHHHHHHHhhc---CCceEEEeeccccccC
Confidence 632 334445566999999999765433 334444444443 6789999999998653
No 354
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.61 E-value=2.9e-06 Score=77.37 Aligned_cols=152 Identities=17% Similarity=0.273 Sum_probs=84.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce----------eeeEEEEE------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT----------THEVLGVM------------------ 182 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t----------~~~~~~~~------------------ 182 (322)
..+..++++|++|+||||++..|.+ .++.-....+... .......+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3467889999999999999887653 2332222111000 00000000
Q ss_pred -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714 183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256 (322)
Q Consensus 183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~ 256 (322)
...+.++.|+||||...... .....+......+ ...+..++|+|++.+. ..+.. ...+....
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~----~~~~~-a~~f~~~~-- 259 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ----NALSQ-AKAFHEAV-- 259 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh----HHHHH-HHHHHhhC--
Confidence 12356899999999864322 1112222222221 3457889999996432 22222 22222111
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~ 308 (322)
.+.-+|+||.|..............+ +. |+.+++ +|+++++|..
T Consensus 260 -~~~giIlTKlD~t~~~G~~l~~~~~~----~~-Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 260 -GLTGIILTKLDGTAKGGVVFAIADEL----GI-PIKFIG--VGEGIDDLQP 303 (318)
T ss_pred -CCCEEEEECCCCCCCccHHHHHHHHH----CC-CEEEEe--CCCChhhCcc
Confidence 13579999999765544444433333 33 688998 9999988754
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=5.3e-07 Score=85.15 Aligned_cols=141 Identities=13% Similarity=0.291 Sum_probs=89.1
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..+.++.|+++|+||+||||||..|.......+-..+. .+.. +......+++|+.+|.- +.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~---GPiT-vvsgK~RRiTflEcp~D---------------l~ 125 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR---GPIT-VVSGKTRRITFLECPSD---------------LH 125 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC---CceE-EeecceeEEEEEeChHH---------------HH
Confidence 46678999999999999999999998754332221111 0111 12234567899999832 23
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHH-----HHhcCCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE-----QFKHLPGY 289 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~ 289 (322)
+..+...-||++++++|..-++.-+ .++.|.-+.....| .++-|++..|+.....-+..... .+...+..
T Consensus 126 ~miDvaKIaDLVlLlIdgnfGfEME---TmEFLnil~~HGmP--rvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 126 QMIDVAKIADLVLLLIDGNFGFEME---TMEFLNILISHGMP--RVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred HHHhHHHhhheeEEEeccccCceeh---HHHHHHHHhhcCCC--ceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC
Confidence 4445667789999999986544332 33444444444333 38899999999887654433333 33445555
Q ss_pred CcEEEeecCC
Q 020714 290 ERIFMTSGLK 299 (322)
Q Consensus 290 ~~~~~iSa~~ 299 (322)
...|.+|...
T Consensus 201 aKlFylsgV~ 210 (1077)
T COG5192 201 AKLFYLSGVE 210 (1077)
T ss_pred ceEEEecccc
Confidence 5788888653
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.59 E-value=4.1e-07 Score=74.35 Aligned_cols=84 Identities=25% Similarity=0.325 Sum_probs=56.8
Q ss_pred cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714 224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (322)
Q Consensus 224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi 303 (322)
|++++|+|+..+....+..+.. ..+... ++|+++|+||+|+... .....+...+....+ ..++.+||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~---~~p~IiVlNK~Dl~~~-~~~~~~~~~~~~~~~-~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEK---GKKLILVLNKADLVPK-EVLRKWLAYLRHSYP-TIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcC---CCCEEEEEechhcCCH-HHHHHHHHHHHhhCC-ceEEEEeccCCcCh
Confidence 7899999997765554432321 222222 4689999999999754 323333334443333 35899999999999
Q ss_pred HHHHHHHHHHh
Q 020714 304 KALTQYLMEQF 314 (322)
Q Consensus 304 ~el~~~i~~~l 314 (322)
+++.+.|.+..
T Consensus 74 ~~L~~~i~~~~ 84 (155)
T cd01849 74 EKKESAFTKQT 84 (155)
T ss_pred hhHHHHHHHHh
Confidence 99999997754
No 357
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=9.7e-08 Score=85.10 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=67.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-----------------CccEEEEeCCCccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLML 199 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~DtpG~~~ 199 (322)
...++++|||.||||||||.|.|+..... .++.|.+|.++........ ...+.+.|.+|+..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 35679999999999999999999998766 7888888888666543221 13578999999975
Q ss_pred CCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714 200 NKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (322)
Q Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~ 234 (322)
... +.+ .-...+..++.+|.+++|+++..
T Consensus 97 GAs~G~G------LGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEG------LGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcC------chHHHHHhhhhccceeEEEEecC
Confidence 432 111 12345677899999999998753
No 358
>PRK14974 cell division protein FtsY; Provisional
Probab=98.55 E-value=9.9e-07 Score=80.80 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=84.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEE-E------------E
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVL-G------------V 181 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~-~------------~ 181 (322)
.++..++++|++|+||||++..|.. ..+..+.... +....... + .
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 3567899999999999998776642 2222222111 10000000 0 0
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (322)
....+.++.|+||+|..... ......++.... ....|.+++|+|+..+. + .......+.... ...-
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~-~~~pd~~iLVl~a~~g~---d--~~~~a~~f~~~~---~~~g 283 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTD-----ANLMDELKKIVR-VTKPDLVIFVGDALAGN---D--AVEQAREFNEAV---GIDG 283 (336)
T ss_pred HHhCCCCEEEEECCCccCCc-----HHHHHHHHHHHH-hhCCceEEEeeccccch---h--HHHHHHHHHhcC---CCCE
Confidence 01134679999999987421 222222333322 23468889999985431 1 122223332211 1258
Q ss_pred EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHH
Q 020714 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQY 309 (322)
Q Consensus 262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~ 309 (322)
+|+||.|............... +. |+.+++ +|+++++|..+
T Consensus 284 iIlTKlD~~~~~G~~ls~~~~~----~~-Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 284 VILTKVDADAKGGAALSIAYVI----GK-PILFLG--VGQGYDDLIPF 324 (336)
T ss_pred EEEeeecCCCCccHHHHHHHHH----Cc-CEEEEe--CCCChhhcccC
Confidence 9999999976544443333332 33 688888 89999888643
No 359
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.54 E-value=1.7e-05 Score=70.87 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=84.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCc-----------eeeeEEEEE-----------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNT-----------TTHEVLGVM----------------- 182 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~-----------t~~~~~~~~----------------- 182 (322)
..+..++++|++|+||||++..|. +.++.-+...+.. .........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 345678899999999999987664 2233222211100 000000000
Q ss_pred -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714 183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256 (322)
Q Consensus 183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~ 256 (322)
...+.++.|+||||..... ......+....... ..+|.+++|+|++.+ ...+.. ...+....
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~----~~~~~~-~~~f~~~~-- 217 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG----QNALEQ-AKVFNEAV-- 217 (272)
T ss_pred HHHCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC----HHHHHH-HHHHHhhC--
Confidence 0245789999999986421 22222222222222 237899999999532 122222 22222111
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHH
Q 020714 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQY 309 (322)
Q Consensus 257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~ 309 (322)
.+.-+|+||.|..............+ +. |+.+++ +|++++++..+
T Consensus 218 -~~~g~IlTKlDe~~~~G~~l~~~~~~----~~-Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 218 -GLTGIILTKLDGTAKGGIILSIAYEL----KL-PIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred -CCCEEEEEccCCCCCccHHHHHHHHH----Cc-CEEEEe--CCCChHhCccC
Confidence 13679999999876555444433333 33 688888 89999887543
No 360
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.53 E-value=1.4e-06 Score=79.00 Aligned_cols=162 Identities=20% Similarity=0.300 Sum_probs=95.4
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeee-------------cCCCCceeeeEEEEEee-----------------
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-------------SRKTNTTTHEVLGVMTK----------------- 184 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-------------~~~~~~t~~~~~~~~~~----------------- 184 (322)
..+..+.|+..|.-+.|||||+-.|.-.+...- .-..|.+.+....++-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 356678999999999999999988763321100 00112222222222111
Q ss_pred ------CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc--ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714 185 ------ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256 (322)
Q Consensus 185 ------~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~ 256 (322)
.+.-+.|+||.|.+.. ++.++.-+ ...|..++++.+.++.+....+-...+-.+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~------ 254 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM------ 254 (527)
T ss_pred hHhhhhcccEEEEEecCCccHH------------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhh------
Confidence 1234679999998743 22222222 556899999998777655433222222222
Q ss_pred CCcEEEEEeCCCCCCChh------HHHHHHHH--------------------HhcCCCCCcEEEeecCCCCCHHHHHHHH
Q 020714 257 KQKRVLCMNKVDLVTKKK------DLLKVAEQ--------------------FKHLPGYERIFMTSGLKGAGLKALTQYL 310 (322)
Q Consensus 257 ~~p~ivV~NK~Dl~~~~~------~~~~~~~~--------------------~~~~~~~~~~~~iSa~~g~gi~el~~~i 310 (322)
..|+++|+||+|+.+... +.....+. ...-.+..|+|.+|+.+|+|++-|.+.+
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 467999999999987531 11111111 1111235589999999999998777766
Q ss_pred HHHh
Q 020714 311 MEQF 314 (322)
Q Consensus 311 ~~~l 314 (322)
...=
T Consensus 335 ~~Lp 338 (527)
T COG5258 335 LLLP 338 (527)
T ss_pred HhCC
Confidence 5443
No 361
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.52 E-value=1.5e-06 Score=82.62 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=99.1
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-eEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
..++.+.+.++|+.|+|||.+++.++|+.+.. .....+... ....+...+ ..-+.+.|.+-. ......+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~------- 491 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS------- 491 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccC-------
Confidence 44567899999999999999999999987655 221111111 111111122 233455555432 1111000
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.+ ..||+++++||.+++.+... .....+... .. ...|+++|++|+|+....+.....-..+...++.++.
T Consensus 492 -----ke-~~cDv~~~~YDsS~p~sf~~--~a~v~~~~~-~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P 561 (625)
T KOG1707|consen 492 -----KE-AACDVACLVYDSSNPRSFEY--LAEVYNKYF-DL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP 561 (625)
T ss_pred -----cc-ceeeeEEEecccCCchHHHH--HHHHHHHhh-hc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC
Confidence 11 56899999999986544332 222222222 22 4678999999999987654333333777777888888
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhh
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+.+|.+.... .++|..|..+..-
T Consensus 562 ~~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 562 IHISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred eeeccCCCCC-chHHHHHHHhhhC
Confidence 9999985222 8888888876654
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=7.8e-07 Score=71.50 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=58.0
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..++..+..+|++++|+|+..+.+..+..+..++.... .++|+++|+||+|+... .........+... + .+++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----~~k~~iivlNK~DL~~~-~~~~~~~~~~~~~-~-~~ii 75 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----PRKKNILLLNKADLLTE-EQRKAWAEYFKKE-G-IVVV 75 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----CCCcEEEEEechhcCCH-HHHHHHHHHHHhc-C-CeEE
Confidence 45566788899999999998877766666667766542 25689999999999753 2333334444433 3 3689
Q ss_pred EeecCCCCC
Q 020714 294 MTSGLKGAG 302 (322)
Q Consensus 294 ~iSa~~g~g 302 (322)
++||++|.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999998864
No 363
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=1.4e-06 Score=78.67 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 207 ~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
.++....++....+..+|++++|+|+..+.+..+..+...+ . ++|+++|+||+|+.+. .....+...+...
T Consensus 9 gHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~---~-----~kp~iiVlNK~DL~~~-~~~~~~~~~~~~~ 79 (287)
T PRK09563 9 GHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII---G-----NKPRLLILNKSDLADP-EVTKKWIEYFEEQ 79 (287)
T ss_pred HHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh---C-----CCCEEEEEEchhcCCH-HHHHHHHHHHHHc
Confidence 44566778888889999999999999776655543333322 1 4679999999999653 2233444444322
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+ .+++.+||+++.|++++.+.|...+..
T Consensus 80 -~-~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 80 -G-IKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred -C-CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 2 358999999999999999999887754
No 364
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.46 E-value=3.7e-06 Score=74.72 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=47.3
Q ss_pred CcEEEEEeCCCCCCC-------hh----HHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 258 QKRVLCMNKVDLVTK-------KK----DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 258 ~p~ivV~NK~Dl~~~-------~~----~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+|+++|.+|||.+.- +. -+...++.|+-.+|.. .|++|+|...||+-|..+|.+..+...+
T Consensus 223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKYivhr~yG~~f 294 (473)
T KOG3905|consen 223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKYIVHRSYGFPF 294 (473)
T ss_pred CcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHHHHHHhcCccc
Confidence 789999999998531 11 1334567777778874 8999999999999999999998875443
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=7.6e-06 Score=75.88 Aligned_cols=152 Identities=14% Similarity=0.253 Sum_probs=78.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC--------eeeeecCCC----------------CceeeeEEE-------EEeeC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKT----------------NTTTHEVLG-------VMTKA 185 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~--------~~~~~~~~~----------------~~t~~~~~~-------~~~~~ 185 (322)
..+-.++|+|++||||||++..|... .+..+.... +........ .....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 44668899999999999999887532 121111111 110000000 00113
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCC----CcE
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPK----QKR 260 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~----~p~ 260 (322)
+..+.|+||+|...... ...+.+. .+.....+.-.++|+++..+. ..+...+..+.... .+. ...
T Consensus 215 ~~DlVLIDTaG~~~~d~-----~l~e~La-~L~~~~~~~~~lLVLsAts~~----~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDR-----TVSDQIA-MLHGADTPVQRLLLLNATSHG----DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred CCCEEEEcCCCCCcccH-----HHHHHHH-HHhccCCCCeEEEEecCccCh----HHHHHHHHHHHHhhcccccccCCCC
Confidence 56899999999864321 1122222 222334445678899985432 22333333333211 000 124
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714 261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (322)
Q Consensus 261 ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e 305 (322)
=+|+||.|....-.......... +. |+.+++ +|++|.+
T Consensus 285 ~~I~TKlDEt~~~G~~l~~~~~~----~l-Pi~yvt--~Gq~VPe 322 (374)
T PRK14722 285 GCILTKLDEASNLGGVLDTVIRY----KL-PVHYVS--TGQKVPE 322 (374)
T ss_pred EEEEeccccCCCccHHHHHHHHH----Cc-CeEEEe--cCCCCCc
Confidence 68899999876544443333332 23 577776 6776654
No 366
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.8e-06 Score=83.10 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=74.6
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC----------------CCCceeee--EEEEEee---CCccEEEEe
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----------------KTNTTTHE--VLGVMTK---ADTQICIFD 193 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~----------------~~~~t~~~--~~~~~~~---~~~~~~l~D 193 (322)
......+|+++|.-..|||+|+..|.....+.... .-|.+... ....+.. ...-+.++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 34567789999999999999999997643322110 01111111 1111111 134568999
Q ss_pred CCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
|||...+.. .+...++.+|++++|+|+..+.....+. .++..... +.|+++|+||+|..
T Consensus 204 TPGHVnF~D------------E~ta~l~~sDgvVlvvDv~EGVmlntEr---~ikhaiq~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSD------------ETTASLRLSDGVVLVVDVAEGVMLNTER---IIKHAIQN---RLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchH------------HHHHHhhhcceEEEEEEcccCceeeHHH---HHHHHHhc---cCcEEEEEehhHHH
Confidence 999987632 2224466779999999998776655443 33333333 56799999999975
No 367
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.40 E-value=6.7e-06 Score=75.94 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=75.4
Q ss_pred eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHhc-cc
Q 020714 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMG-KQ 253 (322)
Q Consensus 183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~~-~~ 253 (322)
...+..+.+||.+|..... +.+...+..++++++|+|.++-. ..........++.+- ..
T Consensus 180 ~~~~~~~~~~DvgGqr~~R------------~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 180 IVKKLFFRMFDVGGQRSER------------KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred EECCeEEEEEecCCchhhh------------hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 3456678899999985321 12234567889999999997521 111112223333332 33
Q ss_pred CCCCCcEEEEEeCCCCCCCh----------------hH----HHHHHHHHhcCCC-----CCcEEEeecCCCCCHHHHHH
Q 020714 254 APPKQKRVLCMNKVDLVTKK----------------KD----LLKVAEQFKHLPG-----YERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 254 ~~~~~p~ivV~NK~Dl~~~~----------------~~----~~~~~~~~~~~~~-----~~~~~~iSa~~g~gi~el~~ 308 (322)
...+.|+++++||.|+.... .+ ..-+...|..... ..-+..++|..-.++..+|+
T Consensus 248 ~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~ 327 (342)
T smart00275 248 WFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFD 327 (342)
T ss_pred cccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHH
Confidence 44568999999999986321 01 1112233332221 12346788999999999999
Q ss_pred HHHHHhhhcCC
Q 020714 309 YLMEQFKDLGL 319 (322)
Q Consensus 309 ~i~~~l~~~~~ 319 (322)
.+.+.+....+
T Consensus 328 ~v~~~I~~~~l 338 (342)
T smart00275 328 AVKDIILQRNL 338 (342)
T ss_pred HHHHHHHHHHH
Confidence 98888876543
No 368
>PRK00098 GTPase RsgA; Reviewed
Probab=98.37 E-value=2.4e-06 Score=77.48 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=59.0
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+.++|.+++|+|+.++... ...+..++..+... +.|.++|+||+|+.............+.. .+. +++++||++
T Consensus 78 aaniD~vllV~d~~~p~~~-~~~idr~L~~~~~~---~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-~g~-~v~~vSA~~ 151 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEAN---GIKPIIVLNKIDLLDDLEEARELLALYRA-IGY-DVLELSAKE 151 (298)
T ss_pred eecCCEEEEEEECCCCCCC-HHHHHHHHHHHHHC---CCCEEEEEEhHHcCCCHHHHHHHHHHHHH-CCC-eEEEEeCCC
Confidence 5788999999999654332 22334555554433 56799999999997443333333333322 344 699999999
Q ss_pred CCCHHHHHHHHH
Q 020714 300 GAGLKALTQYLM 311 (322)
Q Consensus 300 g~gi~el~~~i~ 311 (322)
|.|+++|++.|.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999998874
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=98.37 E-value=2.4e-06 Score=78.92 Aligned_cols=87 Identities=24% Similarity=0.367 Sum_probs=60.3
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+.++|.+++|+|+.++. .....+..++..... .+.|+++|+||+|+.... ....+...+. ..++ +++++||++
T Consensus 87 ~aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~-~~~~~~~~~~-~~g~-~v~~iSA~t 159 (352)
T PRK12289 87 VANADQILLVFALAEPP-LDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPT-EQQQWQDRLQ-QWGY-QPLFISVET 159 (352)
T ss_pred hhcCCEEEEEEECCCCC-CCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChH-HHHHHHHHHH-hcCC-eEEEEEcCC
Confidence 57789999999997543 222234455554433 257799999999997542 2333444443 3455 589999999
Q ss_pred CCCHHHHHHHHHHH
Q 020714 300 GAGLKALTQYLMEQ 313 (322)
Q Consensus 300 g~gi~el~~~i~~~ 313 (322)
|.|+++|++.|...
T Consensus 160 g~GI~eL~~~L~~k 173 (352)
T PRK12289 160 GIGLEALLEQLRNK 173 (352)
T ss_pred CCCHHHHhhhhccc
Confidence 99999999988653
No 370
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=3.9e-06 Score=78.15 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred HHHHHhhc-ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCC
Q 020714 213 VESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPG 288 (322)
Q Consensus 213 ~~~~~~~~-~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~ 288 (322)
+...+..+ ..++++++|+|+.+...... ..+.... .+.|+++|+||+|+.+... ....+........+
T Consensus 53 f~~~l~~~~~~~~~Il~VvD~~d~~~s~~----~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 53 FLNLLNSLGDSNALIVYVVDIFDFEGSLI----PELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHhhcccCCcEEEEEEECcCCCCCcc----HHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 44444444 67789999999965443332 2222221 1467999999999976432 23333333333344
Q ss_pred C--CcEEEeecCCCCCHHHHHHHHHHH
Q 020714 289 Y--ERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 289 ~--~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
. ..++.+||++|.|++++++.|.+.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 4 258999999999999999999765
No 371
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.37 E-value=1.1e-06 Score=74.68 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=56.1
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.|+||||..... ......+...+... ..+-+++|++++.+ ...+........... +.=+|+|
T Consensus 83 ~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~~-~~~~~~LVlsa~~~----~~~~~~~~~~~~~~~----~~~lIlT 148 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD-----EELLEELKKLLEAL-NPDEVHLVLSATMG----QEDLEQALAFYEAFG----IDGLILT 148 (196)
T ss_dssp TSSEEEEEE-SSSSTH-----HHHHHHHHHHHHHH-SSSEEEEEEEGGGG----GHHHHHHHHHHHHSS----TCEEEEE
T ss_pred CCCEEEEecCCcchhh-----HHHHHHHHHHhhhc-CCccceEEEecccC----hHHHHHHHHHhhccc----CceEEEE
Confidence 4679999999986321 22233344444444 55788999998543 222322222222111 2467799
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
|.|....-.......... +. |+-++| +|++|+++
T Consensus 149 KlDet~~~G~~l~~~~~~----~~-Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 149 KLDETARLGALLSLAYES----GL-PISYIT--TGQRVDDL 182 (196)
T ss_dssp STTSSSTTHHHHHHHHHH----TS-EEEEEE--SSSSTTGE
T ss_pred eecCCCCcccceeHHHHh----CC-CeEEEE--CCCChhcC
Confidence 999876655444433332 22 577777 77777554
No 372
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.37 E-value=3.4e-06 Score=80.54 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=48.9
Q ss_pred CcEEEEEeCCCCCCC--------h---hHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 258 QKRVLCMNKVDLVTK--------K---KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 258 ~p~ivV~NK~Dl~~~--------~---~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
+|++||.+|+|.... + .-+.+.++.++-.+|.. .|++|++...+++.|+.+|.+.++...++
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 799999999997631 1 12345567777778875 89999999999999999999998875544
No 373
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.37 E-value=4.5e-06 Score=76.03 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=89.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCC----eee-------eecCCC-C----c---eeeeEEEE--Ee---------------e
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT----KVA-------AVSRKT-N----T---TTHEVLGV--MT---------------K 184 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~----~~~-------~~~~~~-~----~---t~~~~~~~--~~---------------~ 184 (322)
..++.|+=|+|||||||.++.. +++ .++-.. . + ......+. +. .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 3568899999999999998742 222 122110 0 0 00111111 11 2
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHH--HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVES--AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv 262 (322)
++.+..++.|-|+-.+.+ ....+.. .+...-.-|.++-|+|+.+-.............++... .++
T Consensus 83 ~~~D~ivIEtTGlA~P~p------v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~i 150 (323)
T COG0523 83 DRPDRLVIETTGLADPAP------VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVI 150 (323)
T ss_pred CCCCEEEEeCCCCCCCHH------HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEE
Confidence 345678999999876522 2222221 22233445889999999653322221112223333333 699
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307 (322)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~ 307 (322)
|+||+|+..... .......+.+.++..+++.+|. .+.+..+++
T Consensus 151 vlNK~Dlv~~~~-l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 151 VLNKTDLVDAEE-LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred EEecccCCCHHH-HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 999999998764 6677778888888888998887 444554444
No 374
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.4e-06 Score=84.83 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCC---------------CCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK---------------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
+.-+++++..-.-|||||+..|....-...+.. -|.|...........+..+.++|+||..+|..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 455788888889999999999874332211111 23333322222334677889999999998754
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D 268 (322)
... .....+|+.++++|+-.+...+...+ ++..... +...++|+||+|
T Consensus 88 evs------------sas~l~d~alvlvdvvegv~~qt~~v---lrq~~~~---~~~~~lvinkid 135 (887)
T KOG0467|consen 88 EVS------------SASRLSDGALVLVDVVEGVCSQTYAV---LRQAWIE---GLKPILVINKID 135 (887)
T ss_pred hhh------------hhhhhcCCcEEEEeeccccchhHHHH---HHHHHHc---cCceEEEEehhh
Confidence 221 22355799999999976665554433 3333322 234899999999
No 375
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.36 E-value=6e-07 Score=69.84 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++++++|..|||||+|+.++....+.... .. .|.. +..+| . ..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~-~~-~t~~------------~~~~~--------~---------------~~ 43 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP-TV-FTIG------------IDVYD--------P---------------TS 43 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccC-ce-ehhh------------hhhcc--------c---------------cc
Confidence 47999999999999999999655432110 00 0100 11111 0 12
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
...++.++.+++.....+... . |...+......+.|.++++||.|+........+ .. .+++++|+++
T Consensus 44 ~~s~~~~~~v~~~~~~~s~~~--~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~----~~-----~~~~~~s~~~ 110 (124)
T smart00010 44 YESFDVVLQCWRVDDRDSADN--K--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATE----EG-----LEFAETSAKT 110 (124)
T ss_pred cCCCCEEEEEEEccCHHHHHH--H--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHH----HH-----HHHHHHhCCC
Confidence 345588888888855333211 1 333333333345778999999998432211111 11 1356789999
Q ss_pred CCCHH
Q 020714 300 GAGLK 304 (322)
Q Consensus 300 g~gi~ 304 (322)
|.|+.
T Consensus 111 ~~~~~ 115 (124)
T smart00010 111 PEEGE 115 (124)
T ss_pred cchhh
Confidence 99984
No 376
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.34 E-value=1.1e-05 Score=73.93 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=75.4
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHhc-c
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMG-K 252 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~~-~ 252 (322)
+...+..+.+||++|..... ......+..++++++|+|.++-. ...-......++.+- .
T Consensus 156 f~~~~~~~~~~DvgGq~~~R------------~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRSER------------KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred EEecceEEEEECCCCCcccc------------hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 33456778899999986422 12334567889999999997521 011112223333332 2
Q ss_pred cCCCCCcEEEEEeCCCCCCCh-----------------hHHH----HHHHHHhcCCC----CCcEEEeecCCCCCHHHHH
Q 020714 253 QAPPKQKRVLCMNKVDLVTKK-----------------KDLL----KVAEQFKHLPG----YERIFMTSGLKGAGLKALT 307 (322)
Q Consensus 253 ~~~~~~p~ivV~NK~Dl~~~~-----------------~~~~----~~~~~~~~~~~----~~~~~~iSa~~g~gi~el~ 307 (322)
....+.|+++++||.|+.... ...+ -+...|..... ..-+..++|..-.++..+|
T Consensus 224 ~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf 303 (317)
T cd00066 224 RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVF 303 (317)
T ss_pred ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHH
Confidence 333568999999999965310 1111 12233332221 1124668999999999999
Q ss_pred HHHHHHhhhcCC
Q 020714 308 QYLMEQFKDLGL 319 (322)
Q Consensus 308 ~~i~~~l~~~~~ 319 (322)
+.+.+.+....+
T Consensus 304 ~~v~~~i~~~~l 315 (317)
T cd00066 304 DAVKDIILQNNL 315 (317)
T ss_pred HHHHHHHHHHHh
Confidence 999988877654
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=8.5e-06 Score=75.43 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCc--------e----ee-eEEEEE------------e-eC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT--------T----TH-EVLGVM------------T-KA 185 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~--------t----~~-~~~~~~------------~-~~ 185 (322)
.+..|+++|++||||||++..|.. .++..+...+.. + .. ...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999988752 122222211110 0 00 000000 0 01
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.|+||||..... ......+...+.. ...+.+++|+|++.. ...+...++.+.... ..=+|+|
T Consensus 320 ~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~-~~PdevlLVLsATtk----~~d~~~i~~~F~~~~----idglI~T 385 (436)
T PRK11889 320 RVDYILIDTAGKNYRA-----SETVEEMIETMGQ-VEPDYICLTLSASMK----SKDMIEIITNFKDIH----IDGIVFT 385 (436)
T ss_pred CCCEEEEeCccccCcC-----HHHHHHHHHHHhh-cCCCeEEEEECCccC----hHHHHHHHHHhcCCC----CCEEEEE
Confidence 4689999999986421 1212223333332 234678888987432 233455666665422 2578999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
|.|............... +. |+.+++ +|+++.+=
T Consensus 386 KLDET~k~G~iLni~~~~----~l-PIsyit--~GQ~VPeD 419 (436)
T PRK11889 386 KFDETASSGELLKIPAVS----SA-PIVLMT--DGQDVKKN 419 (436)
T ss_pred cccCCCCccHHHHHHHHH----Cc-CEEEEe--CCCCCCcc
Confidence 999876555544434333 33 577776 67776543
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=6.9e-06 Score=76.57 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=63.9
Q ss_pred HHHHHHhhccccc-EEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh---hHHHHHHHHHhcCC
Q 020714 212 RVESAWSAVNLFE-VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLP 287 (322)
Q Consensus 212 ~~~~~~~~~~~ad-~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~---~~~~~~~~~~~~~~ 287 (322)
.+...+..+...+ ++++|+|+.+.... +...+..+.. +.|+++|+||+|+.+.. .....+...+....
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s----~~~~L~~~~~----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGS----WIPGLHRFVG----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCc----hhHHHHHHhC----CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 4566777777666 99999999653322 2233333321 45799999999997532 22333444444444
Q ss_pred CC--CcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 288 GY--ERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 288 ~~--~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
+. ..++.+||++|.|++++++.|.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 43 2589999999999999999997754
No 379
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=1.5e-05 Score=75.08 Aligned_cols=149 Identities=11% Similarity=0.161 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--------eeeecCC----------------CCceeeeEEE-------EEeeCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--------VAAVSRK----------------TNTTTHEVLG-------VMTKAD 186 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--------~~~~~~~----------------~~~t~~~~~~-------~~~~~~ 186 (322)
.+-+++++|++|+||||++..|.+.. ...+... .|........ .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45689999999999999998775421 1100000 0100000000 011235
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.++||+|..... ......+.. +.......-.++|+|++. ....+...+..+.... ..=+|+||
T Consensus 270 ~d~VLIDTaGrsqrd-----~~~~~~l~~-l~~~~~~~~~~LVl~at~----~~~~~~~~~~~f~~~~----~~~~I~TK 335 (420)
T PRK14721 270 KHMVLIDTVGMSQRD-----QMLAEQIAM-LSQCGTQVKHLLLLNATS----SGDTLDEVISAYQGHG----IHGCIITK 335 (420)
T ss_pred CCEEEecCCCCCcch-----HHHHHHHHH-HhccCCCceEEEEEcCCC----CHHHHHHHHHHhcCCC----CCEEEEEe
Confidence 678999999987431 112222222 222233456778898853 2344555666665332 25689999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHH
Q 020714 267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT 307 (322)
Q Consensus 267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~ 307 (322)
.|....-.......... +. |+.+++ +|++| +++.
T Consensus 336 lDEt~~~G~~l~~~~~~----~l-Pi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 336 VDEAASLGIALDAVIRR----KL-VLHYVT--NGQKVPEDLH 370 (420)
T ss_pred eeCCCCccHHHHHHHHh----CC-CEEEEE--CCCCchhhhh
Confidence 99876544443333332 33 577777 78888 5554
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.30 E-value=6.4e-06 Score=67.58 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=41.7
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHH--HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVR--VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~--~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..++||||+..+. ..... ....+...-..|.+++++|+..-.... .....+...+... .++|
T Consensus 86 ~~d~I~IEt~G~~~p~------~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~-~~~~~~~~Qi~~a------d~iv 152 (158)
T cd03112 86 AFDRIVIETTGLADPG------PVAQTFFMDEELAERYLLDGVITLVDAKHANQHL-DQQTEAQSQIAFA------DRIL 152 (158)
T ss_pred CCCEEEEECCCcCCHH------HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHh-hccHHHHHHHHHC------CEEE
Confidence 4577899999997542 22221 123445566779999999985321111 0111233444433 5889
Q ss_pred EeCCCC
Q 020714 264 MNKVDL 269 (322)
Q Consensus 264 ~NK~Dl 269 (322)
+||+|+
T Consensus 153 lnk~dl 158 (158)
T cd03112 153 LNKTDL 158 (158)
T ss_pred EecccC
Confidence 999996
No 381
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.2e-05 Score=72.01 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=105.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC----------Ceeeeec-----CCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~----------~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
+..++|+-+|.-.-|||||-.+++. .++.+.. ..-|.|..............+-=.|+||.-+
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD-- 129 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD-- 129 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH--
Confidence 4568999999999999999887753 1122222 2235665555544444556667799999753
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HH
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LK 278 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~ 278 (322)
.++..+.-....|+.|+|+.+.++.-.+..+-.-+-+.++.. .+++.+||.|++++.+.. +.
T Consensus 130 ----------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~-----~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 130 ----------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVK-----HIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred ----------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCc-----eEEEEEecccccCCHHHHHHHHH
Confidence 466666667778999999999988777666555566666653 389999999999765433 23
Q ss_pred HHHHHhcCCCC----CcEEEeec---CCCCC-------HHHHHHHHHHHh
Q 020714 279 VAEQFKHLPGY----ERIFMTSG---LKGAG-------LKALTQYLMEQF 314 (322)
Q Consensus 279 ~~~~~~~~~~~----~~~~~iSa---~~g~g-------i~el~~~i~~~l 314 (322)
+++++...+++ .|++.=|| +.|.+ |.+|++++...+
T Consensus 195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 34455444554 36776555 45532 555555555544
No 382
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.26 E-value=1.5e-05 Score=73.71 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCee--eeecCCCCceeeeEEE-------------------E----------EeeCCc
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLG-------------------V----------MTKADT 187 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~--~~~~~~~~~t~~~~~~-------------------~----------~~~~~~ 187 (322)
+-.|++||++||||||.+-.|..... .......-.|.++... . .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999999877653222 0000000011111110 0 011346
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
++.|+||.|...... .. ...+...... ....-+.+|+++ +.....+...+..+..... .-+++||.
T Consensus 283 d~ILVDTaGrs~~D~----~~-i~el~~~~~~-~~~i~~~Lvlsa----t~K~~dlkei~~~f~~~~i----~~~I~TKl 348 (407)
T COG1419 283 DVILVDTAGRSQYDK----EK-IEELKELIDV-SHSIEVYLVLSA----TTKYEDLKEIIKQFSLFPI----DGLIFTKL 348 (407)
T ss_pred CEEEEeCCCCCccCH----HH-HHHHHHHHhc-cccceEEEEEec----CcchHHHHHHHHHhccCCc----ceeEEEcc
Confidence 899999999875432 11 1223333222 244556777877 3344567777777775433 46889999
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714 268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (322)
Q Consensus 268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e 305 (322)
|....-..+-....+. +. |+-+++ +|++|.+
T Consensus 349 DET~s~G~~~s~~~e~----~~-PV~YvT--~GQ~VPe 379 (407)
T COG1419 349 DETTSLGNLFSLMYET----RL-PVSYVT--NGQRVPE 379 (407)
T ss_pred cccCchhHHHHHHHHh----CC-CeEEEe--CCCCCCc
Confidence 9876544443333332 22 466665 6776643
No 383
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.6e-05 Score=76.98 Aligned_cols=122 Identities=24% Similarity=0.385 Sum_probs=68.3
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee------------ecCC---------CC----------------------
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------VSRK---------TN---------------------- 172 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~------------~~~~---------~~---------------------- 172 (322)
.+...||+|.|.+++||||++|+++..++.. +... ++
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4567899999999999999999987533221 1110 01
Q ss_pred ceeeeEEEEEeeCC------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHH
Q 020714 173 TTTHEVLGVMTKAD------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246 (322)
Q Consensus 173 ~t~~~~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~ 246 (322)
........++-..+ .++.++|.||+..... ....+. .....+|++|+|..+.+..+..+.. .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se------~tswid---~~cldaDVfVlV~NaEntlt~sek~---F 253 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE------LTSWID---SFCLDADVFVLVVNAENTLTLSEKQ---F 253 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchh------hhHHHH---HHhhcCCeEEEEecCccHhHHHHHH---H
Confidence 00001111111111 3678999999864321 111111 2346779999999986544443322 2
Q ss_pred HHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 247 IERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 247 l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+...... ...+.++-||.|....
T Consensus 254 f~~vs~~---KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 254 FHKVSEE---KPNIFILNNKWDASAS 276 (749)
T ss_pred HHHhhcc---CCcEEEEechhhhhcc
Confidence 2222222 1227788888898765
No 384
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.25 E-value=8.4e-07 Score=74.29 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=74.1
Q ss_pred EEEEEcCCCCchhHHHHHHh-----CCeeeeecCCCCc-ee-------e-eEEEEE---------------------eeC
Q 020714 141 AVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNT-TT-------H-EVLGVM---------------------TKA 185 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~-----~~~~~~~~~~~~~-t~-------~-~~~~~~---------------------~~~ 185 (322)
.+++.|+.|+||||||+.++ +.+.+......|. .. . .....+ ...
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 46799999999999999988 2333333332320 00 0 001100 112
Q ss_pred --CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 186 --DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 186 --~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..++.+.|...+.. ... ....+...-..+.++.|+|+..- .........+...+... .++|
T Consensus 82 ~~~~d~IiIE~sG~a~p~~------l~~-~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~~A------DvIv 147 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAP------LIL-QDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIAFA------DVIV 147 (178)
T ss_dssp HGC-SEEEEEEECSSGGGG------HHH-HSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHCT-------SEEE
T ss_pred CCCcCEEEECCccccccch------hhh-ccccccccccccceeEEeccccc-cccccchhhhhhcchhc------CEEE
Confidence 35778899999765432 111 12233334455899999999542 11111122234444443 6999
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
+||+|+.+.....+...+.+.+.++..+++
T Consensus 148 lnK~D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 148 LNKIDLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp EE-GGGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred EeccccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 999999876533455566666666655554
No 385
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=5.9e-06 Score=74.52 Aligned_cols=87 Identities=18% Similarity=0.272 Sum_probs=58.9
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
.+.++|.+++|+|+..+.. ....+..++..+... +.|.++|+||+|+...... ....... ...+. +++++||+
T Consensus 75 i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~~-~~~~~~~-~~~g~-~v~~vSA~ 147 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEEE-ELELVEA-LALGY-PVLAVSAK 147 (287)
T ss_pred EEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHHH-HHHHHHH-HhCCC-eEEEEECC
Confidence 3678899999999976541 122344555554433 4679999999999765221 1212222 22344 69999999
Q ss_pred CCCCHHHHHHHHHH
Q 020714 299 KGAGLKALTQYLME 312 (322)
Q Consensus 299 ~g~gi~el~~~i~~ 312 (322)
+|.|+++|+.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 386
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=8.1e-05 Score=68.78 Aligned_cols=147 Identities=14% Similarity=0.204 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce------------ee-eEEEEEe-------------eC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT------------TH-EVLGVMT-------------KA 185 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t------------~~-~~~~~~~-------------~~ 185 (322)
.+-.++++|++||||||++..|.. .++..+...+... .. ....... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 456789999999999999987652 2232222211100 00 0000000 02
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.|+||||..... ......+....... ..+.+++|+++. .....+...+..+... .+.-+|+|
T Consensus 285 ~~D~VLIDTAGr~~~d-----~~~l~EL~~l~~~~-~p~~~~LVLsag----~~~~d~~~i~~~f~~l----~i~glI~T 350 (407)
T PRK12726 285 CVDHILIDTVGRNYLA-----EESVSEISAYTDVV-HPDLTCFTFSSG----MKSADVMTILPKLAEI----PIDGFIIT 350 (407)
T ss_pred CCCEEEEECCCCCccC-----HHHHHHHHHHhhcc-CCceEEEECCCc----ccHHHHHHHHHhcCcC----CCCEEEEE
Confidence 4689999999986421 22222233333222 346677777662 2223344555554432 13578899
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e 305 (322)
|.|....-.......... +. |+.++| +|++|.+
T Consensus 351 KLDET~~~G~~Lsv~~~t----gl-PIsylt--~GQ~Vpd 383 (407)
T PRK12726 351 KMDETTRIGDLYTVMQET----NL-PVLYMT--DGQNITE 383 (407)
T ss_pred cccCCCCccHHHHHHHHH----CC-CEEEEe--cCCCCCc
Confidence 999876544444333332 33 577777 7887775
No 387
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=4.1e-05 Score=76.76 Aligned_cols=152 Identities=13% Similarity=0.220 Sum_probs=83.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC--------eeeeecCCC----------------CceeeeEEE-------EEeeCCc
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKT----------------NTTTHEVLG-------VMTKADT 187 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~--------~~~~~~~~~----------------~~t~~~~~~-------~~~~~~~ 187 (322)
+-.++|+|++||||||++..|.+. ++..+.... +........ .-...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 457899999999999999877642 221111111 100000000 0011346
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
+++|+||||..... .......... ......+-+++|+|++. ....+.+.++.+..... ..+.=+|+||.
T Consensus 265 D~VLIDTAGRs~~d-----~~l~eel~~l-~~~~~p~e~~LVLsAt~----~~~~l~~i~~~f~~~~~-~~i~glIlTKL 333 (767)
T PRK14723 265 HLVLIDTVGMSQRD-----RNVSEQIAML-CGVGRPVRRLLLLNAAS----HGDTLNEVVHAYRHGAG-EDVDGCIITKL 333 (767)
T ss_pred CEEEEeCCCCCccC-----HHHHHHHHHH-hccCCCCeEEEEECCCC----cHHHHHHHHHHHhhccc-CCCCEEEEecc
Confidence 78999999976422 1222222222 22334567889999853 33345555555543210 01246889999
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHHH
Q 020714 268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALTQ 308 (322)
Q Consensus 268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~~ 308 (322)
|....-.......... +. |+.+++ +|++| ++|..
T Consensus 334 DEt~~~G~iL~i~~~~----~l-PI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 334 DEATHLGPALDTVIRH----RL-PVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred CCCCCccHHHHHHHHH----CC-CeEEEe--cCCCChhhccc
Confidence 9876555444433332 33 578887 78888 66543
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=8.1e-05 Score=71.58 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=76.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC--------CeeeeecCCCCc------------eeee-EEEEE----------eeC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNT------------TTHE-VLGVM----------TKA 185 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~--------~~~~~~~~~~~~------------t~~~-~~~~~----------~~~ 185 (322)
..+-.++|+|++|+||||++..|.. .++..+...... .... ..... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3456889999999999999987753 122222211100 0000 00000 013
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.|+||||...... .....+. .+.... ....++|++.... ...+...++.+... .+.-+|+|
T Consensus 428 ~~DLVLIDTaG~s~~D~-----~l~eeL~-~L~aa~-~~a~lLVLpAtss----~~Dl~eii~~f~~~----~~~gvILT 492 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDR-----ALAAQLN-WLRAAR-QVTSLLVLPANAH----FSDLDEVVRRFAHA----KPQGVVLT 492 (559)
T ss_pred cCCEEEecCCCcchhhH-----HHHHHHH-HHHHhh-cCCcEEEEECCCC----hhHHHHHHHHHHhh----CCeEEEEe
Confidence 56899999999863211 1111111 111222 2346677777432 22333445554432 24679999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL 306 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el 306 (322)
|.|....-......... .+. ++.+++ +|+.| ++|
T Consensus 493 KlDEt~~lG~aLsv~~~----~~L-PI~yvt--~GQ~VPeDL 527 (559)
T PRK12727 493 KLDETGRFGSALSVVVD----HQM-PITWVT--DGQRVPDDL 527 (559)
T ss_pred cCcCccchhHHHHHHHH----hCC-CEEEEe--CCCCchhhh
Confidence 99986544333322222 233 577777 77777 443
No 389
>PRK12288 GTPase RsgA; Reviewed
Probab=98.18 E-value=1.2e-05 Score=74.18 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=59.2
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEEeec
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+.|.+++|++.....+. ..+..|+...... ++|.++|+||+|+..... ........+.. .+. +++++||
T Consensus 118 aANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~---~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g~-~v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSL--NIIDRYLVACETL---GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IGY-RVLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhc---CCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CCC-eEEEEeC
Confidence 4678999999998543322 3444555544432 467999999999976432 22333333323 344 6999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 020714 298 LKGAGLKALTQYLMEQ 313 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~ 313 (322)
++|.|+++|+++|...
T Consensus 191 ~tg~GideL~~~L~~k 206 (347)
T PRK12288 191 HTGEGLEELEAALTGR 206 (347)
T ss_pred CCCcCHHHHHHHHhhC
Confidence 9999999999998753
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.15 E-value=1.3e-05 Score=76.06 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=79.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------CceeeeEE--EE--------E-e
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHEVL--GV--------M-T 183 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~~~--~~--------~-~ 183 (322)
..+..|+++|.+|+||||++..|.. .++..+.... +....... .. + .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3567899999999999999876642 2222221111 00000000 00 0 0
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
.....+.|+||||..... ......+... .....+|.+++|+|++.+ + ......+.+.... ...-+|
T Consensus 173 ~~~~DvVIIDTAGr~~~d-----~~lm~El~~l-~~~~~pdevlLVvda~~g---q--~av~~a~~F~~~l---~i~gvI 238 (437)
T PRK00771 173 FKKADVIIVDTAGRHALE-----EDLIEEMKEI-KEAVKPDEVLLVIDATIG---Q--QAKNQAKAFHEAV---GIGGII 238 (437)
T ss_pred hhcCCEEEEECCCcccch-----HHHHHHHHHH-HHHhcccceeEEEecccc---H--HHHHHHHHHHhcC---CCCEEE
Confidence 023478999999986321 1111222222 234457899999998653 1 2223344443221 124688
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
+||.|............... +. |+.+++ +|+.+++|
T Consensus 239 lTKlD~~a~~G~~ls~~~~~----~~-Pi~fig--~Ge~v~Dl 274 (437)
T PRK00771 239 ITKLDGTAKGGGALSAVAET----GA-PIKFIG--TGEKIDDL 274 (437)
T ss_pred EecccCCCcccHHHHHHHHH----Cc-CEEEEe--cCCCcccC
Confidence 99999865444433323332 33 577777 57766655
No 391
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.15 E-value=2.8e-05 Score=74.37 Aligned_cols=149 Identities=14% Similarity=0.220 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC--------eeeeecCCCC----------------ceeeeEEE-------EEeeCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKTN----------------TTTHEVLG-------VMTKAD 186 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~--------~~~~~~~~~~----------------~t~~~~~~-------~~~~~~ 186 (322)
.+..++|+|++||||||++..|.+. ++..+...+. ........ .....+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 4567899999999999999887631 2222211110 00000000 011124
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.++||+|..... ..... ....+.......-.++|+|+..+ ...+......+.... ..-+|+||
T Consensus 335 ~d~VLIDTaGr~~~d-----~~~~e-~~~~l~~~~~p~e~~LVLdAt~~----~~~l~~i~~~f~~~~----~~g~IlTK 400 (484)
T PRK06995 335 KHIVLIDTIGMSQRD-----RMVSE-QIAMLHGAGAPVKRLLLLNATSH----GDTLNEVVQAYRGPG----LAGCILTK 400 (484)
T ss_pred CCeEEeCCCCcChhh-----HHHHH-HHHHHhccCCCCeeEEEEeCCCc----HHHHHHHHHHhccCC----CCEEEEeC
Confidence 578999999976321 11111 11122222112337788888532 234445555555432 24678999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHH
Q 020714 267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT 307 (322)
Q Consensus 267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~ 307 (322)
.|....-.......... +. |+.+++ +|++| ++|.
T Consensus 401 lDet~~~G~~l~i~~~~----~l-PI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 401 LDEAASLGGALDVVIRY----KL-PLHYVS--NGQRVPEDLH 435 (484)
T ss_pred CCCcccchHHHHHHHHH----CC-CeEEEe--cCCCChhhhc
Confidence 99876544444333332 33 577777 78888 6654
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.15 E-value=1.8e-05 Score=72.36 Aligned_cols=94 Identities=9% Similarity=0.142 Sum_probs=52.7
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHH--HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRV--ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..++.|.|...+ ..+...+ ...+...-..+.++.|+|+.+.....+ ........+... .++|+
T Consensus 91 ~d~IvIEttG~a~p------~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~-~~~~~~~Qi~~A------D~Ivl 157 (318)
T PRK11537 91 FDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYA------DRILL 157 (318)
T ss_pred CCEEEEECCCccCH------HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcc-ccHHHHHHHHhC------CEEEE
Confidence 45688888888643 2222222 112222233488999999954221111 111222333333 69999
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
||+|+.... +.....+...++..+++.++
T Consensus 158 nK~Dl~~~~---~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 158 TKTDVAGEA---EKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccccCCHH---HHHHHHHHHhCCCCEEEEec
Confidence 999998743 45556666666766666654
No 393
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.14 E-value=4.9e-05 Score=80.97 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeec-------CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC--hhhH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS--HKDV 209 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~ 209 (322)
-+-.+|+|++|+||||+|+.- |..++-.. ...+.|+.... .-.....++||+|......... ....
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w----wf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW----WFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce----EecCCEEEEcCCCccccCCCcccccHHH
Confidence 356789999999999999876 33332211 11122222111 1234568999999754332111 0111
Q ss_pred HHHHHHHHhhc---ccccEEEEEEeCCCCCCCcHH-------HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh
Q 020714 210 KVRVESAWSAV---NLFEVLMVVFDVHRHLTSPDS-------RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK 274 (322)
Q Consensus 210 ~~~~~~~~~~~---~~ad~ii~v~D~s~~~~~~~~-------~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~ 274 (322)
-..+-..+... ...++||+++|+.+-...... .+...+.++...-.-..|+.+|+||||+...-.
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF~ 260 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFE 260 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCHH
Confidence 12233333322 567999999999654322211 233344555544444689999999999987643
No 394
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=0.0002 Score=67.01 Aligned_cols=151 Identities=11% Similarity=0.172 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC----------CeeeeecCCC----------------CceeeeEEEE-------Eee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVSRKT----------------NTTTHEVLGV-------MTK 184 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~----------~~~~~~~~~~----------------~~t~~~~~~~-------~~~ 184 (322)
.+..++++|++||||||.+..|.. ..+..+...+ +......... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356889999999999999876642 2222222111 1100000000 011
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..+.++||+|..... ... ...+...+.......-+++|+|++.+ ...+...+..+.... +.=+|+
T Consensus 253 ~~~DlVLIDTaGr~~~~----~~~-l~el~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~~----~~~~I~ 319 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD----FMK-LAEMKELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPFS----YKTVIF 319 (388)
T ss_pred CCCCEEEEcCCCCCccC----HHH-HHHHHHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCCC----CCEEEE
Confidence 35789999999986321 111 12233344433323358899999543 334445566655321 357899
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHHH
Q 020714 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALTQ 308 (322)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~~ 308 (322)
||.|....-.......... +. |+.+++ +|+++ +++..
T Consensus 320 TKlDet~~~G~~l~~~~~~----~~-Pi~yit--~Gq~vPeDl~~ 357 (388)
T PRK12723 320 TKLDETTCVGNLISLIYEM----RK-EVSYVT--DGQIVPHNISI 357 (388)
T ss_pred EeccCCCcchHHHHHHHHH----CC-CEEEEe--CCCCChhhhhh
Confidence 9999876555444433332 23 577777 78888 55543
No 395
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.4e-05 Score=70.90 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-------------ecCCCCceeeeEEEE---------------------Ee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-------------VSRKTNTTTHEVLGV---------------------MT 183 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-------------~~~~~~~t~~~~~~~---------------------~~ 183 (322)
-.++++++|-..+|||||+--|+...... .....|.|......+ ..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35799999999999999998876432110 001112221111110 11
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
....-++|+|.+|...+...-. ..+.. ...+..++|+.+..+.+....+-..++..++ .|++++
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi---------~gLtg-Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~------iPfFvl 309 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTI---------HGLTG-YTPHFACLVVSADRGITWTTREHLGLIAALN------IPFFVL 309 (591)
T ss_pred hhcceEEEeecccchhhheeee---------eeccc-CCCceEEEEEEcCCCCccccHHHHHHHHHhC------CCeEEE
Confidence 1234578999999875532100 01111 1237888999888776665544444444443 579999
Q ss_pred EeCCCCCCChh---HHHHHHHHH------------------------hcCCCCCcEEEeecCCCCCHHHHHHHH
Q 020714 264 MNKVDLVTKKK---DLLKVAEQF------------------------KHLPGYERIFMTSGLKGAGLKALTQYL 310 (322)
Q Consensus 264 ~NK~Dl~~~~~---~~~~~~~~~------------------------~~~~~~~~~~~iSa~~g~gi~el~~~i 310 (322)
++|+|+..... ...+....+ ....+..|+|.+|..+|+|++-+...+
T Consensus 310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred EEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 99999987621 111111110 112234579999999999998765443
No 396
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.12 E-value=0.0002 Score=66.39 Aligned_cols=169 Identities=13% Similarity=0.158 Sum_probs=93.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC-----------------eeeeecCCCCceeeeEEEE----------Ee-eCCcc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT-----------------KVAAVSRKTNTTTHEVLGV----------MT-KADTQ 188 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~-----------------~~~~~~~~~~~t~~~~~~~----------~~-~~~~~ 188 (322)
...+=+++||+--+||||||.++... ..++ +..|.|..++... +. ....+
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQ--S~aGktImTTEPKFiP~eAv~I~l~~~~~~k 92 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQ--SGAGKTIMTTEPKFIPNEAVEITLDDGIKVK 92 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCc--CCCCCceeccCCcccCCcceEEEecCCceEE
Confidence 45677999999999999999997531 1111 2223333322221 11 12356
Q ss_pred EEEEeCCCcccCC-------------------CCCChhhHHHHHHHHHhhccccc--EEEEEEeCCCCCCC---cHHHHH
Q 020714 189 ICIFDTPGLMLNK-------------------SGYSHKDVKVRVESAWSAVNLFE--VLMVVFDVHRHLTS---PDSRVI 244 (322)
Q Consensus 189 ~~l~DtpG~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ad--~ii~v~D~s~~~~~---~~~~~~ 244 (322)
+.++||.|+.... ...+++..++ --+...+..=. ++++.-|.|-..-. ....-.
T Consensus 93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAe--iGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe 170 (492)
T PF09547_consen 93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAE--IGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE 170 (492)
T ss_pred EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHh--hcccceeccCCceeEEEecCCCccCCChHHHHHHHH
Confidence 7899999986432 2233333221 00111121112 23333444321100 011222
Q ss_pred HHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 245 RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 245 ~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..+.+++.- ++|+++++|-.+ +......+....+...++. ++++++|. .-.-+++...+.+.+.+
T Consensus 171 rvI~ELk~i---gKPFvillNs~~--P~s~et~~L~~eL~ekY~v-pVlpvnc~-~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 171 RVIEELKEI---GKPFVILLNSTK--PYSEETQELAEELEEKYDV-PVLPVNCE-QLREEDITRILEEVLYE 235 (492)
T ss_pred HHHHHHHHh---CCCEEEEEeCCC--CCCHHHHHHHHHHHHHhCC-cEEEeehH-HcCHHHHHHHHHHHHhc
Confidence 334444433 467999999998 4446677778888888888 59999985 34666777777776664
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.11 E-value=2.2e-05 Score=63.62 Aligned_cols=19 Identities=47% Similarity=0.989 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhHHHHHHh
Q 020714 142 VGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~ 160 (322)
++++|.+|+||||++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~ 20 (148)
T cd03114 2 IGITGVPGAGKSTLIDALI 20 (148)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999988765
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.10 E-value=1.7e-05 Score=66.55 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=64.2
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEE
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVL 262 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~iv 262 (322)
...+.++|+||+++-.. +..+...+-+.+..+.--=.+++++|.. -..+... .....+..+..- ..|-|=
T Consensus 97 eddylifDcPGQIELyt---H~pVm~~iv~hl~~~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~l---E~P~IN 169 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYT---HLPVMPQIVEHLKQWNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISL---EVPHIN 169 (273)
T ss_pred cCCEEEEeCCCeeEEee---cChhHHHHHHHHhcccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHh---cCcchh
Confidence 35789999999986432 2222223333333332223456666652 1112222 222222222222 467899
Q ss_pred EEeCCCCCCChh--HHHH---------------------------HHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 263 CMNKVDLVTKKK--DLLK---------------------------VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 263 V~NK~Dl~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
|++|.||..... ..+. .+..+-+-++...+++.-....+.|+.++..|..+
T Consensus 170 vlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 170 VLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred hhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence 999999987521 1110 11112233455567777777777888887777665
Q ss_pred h
Q 020714 314 F 314 (322)
Q Consensus 314 l 314 (322)
+
T Consensus 250 i 250 (273)
T KOG1534|consen 250 I 250 (273)
T ss_pred H
Confidence 5
No 399
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=0.00014 Score=68.19 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC-------eeeeecCCC----------------CceeeeEEE------EEeeCCcc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT-------KVAAVSRKT----------------NTTTHEVLG------VMTKADTQ 188 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~-------~~~~~~~~~----------------~~t~~~~~~------~~~~~~~~ 188 (322)
.+..++++|++||||||++..|... .+..+...+ +........ .....+.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 3456889999999999999877531 222111111 110000000 00113668
Q ss_pred EEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc--cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN--LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 189 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
+.++||||..... ......+...+.... ...-.++|+|++.+ ...+......+.... +.-+|+||
T Consensus 302 ~VLIDTaGr~~rd-----~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~----~~~~~~~~~~f~~~~----~~glIlTK 368 (432)
T PRK12724 302 LILIDTAGYSHRN-----LEQLERMQSFYSCFGEKDSVENLLVLSSTSS----YHHTLTVLKAYESLN----YRRILLTK 368 (432)
T ss_pred EEEEeCCCCCccC-----HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC----HHHHHHHHHHhcCCC----CCEEEEEc
Confidence 8999999986321 122223333333332 23467889998543 234445555554332 25789999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714 267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (322)
Q Consensus 267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e 305 (322)
.|....-.......... +. |+.+++ +|++|.+
T Consensus 369 LDEt~~~G~il~i~~~~----~l-PI~ylt--~GQ~VPe 400 (432)
T PRK12724 369 LDEADFLGSFLELADTY----SK-SFTYLS--VGQEVPF 400 (432)
T ss_pred ccCCCCccHHHHHHHHH----CC-CEEEEe--cCCCCCC
Confidence 99876544443333332 33 566766 6666644
No 400
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.4e-05 Score=70.42 Aligned_cols=164 Identities=13% Similarity=0.252 Sum_probs=94.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec--------------------------CCCCceeeeE-----EEEEee
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--------------------------RKTNTTTHEV-----LGVMTK 184 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~--------------------------~~~~~t~~~~-----~~~~~~ 184 (322)
+...++|+-+|.---||||++.++.|-....-. +.|+.-+..- ...+..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 345789999999999999999988762211000 0011000000 000000
Q ss_pred CC--------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCC
Q 020714 185 AD--------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAP 255 (322)
Q Consensus 185 ~~--------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~ 255 (322)
.+ ..+.|+|+||..- .+ ..++.-..-.|..++++.....+-.+.. +-...++.+..
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDi--------LM----aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L--- 179 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDI--------LM----ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL--- 179 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHH--------HH----HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh---
Confidence 01 2357999999641 12 2223333444888888877654433332 22233333332
Q ss_pred CCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCC-CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 256 PKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLP-GYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 256 ~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+.++++-||+|+....+.. +++...+.... ...|++++||.-+.||+-+.++|.+.+..
T Consensus 180 --khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 180 --KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred --ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 2389999999998764432 23333333221 23479999999999999999999988753
No 401
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.2e-05 Score=76.80 Aligned_cols=117 Identities=26% Similarity=0.336 Sum_probs=77.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC---C--eeeeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG---T--KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~---~--~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
+.-+|+++-.--+||||+-++++. . +...+. ..-|.|.......+.+.+.++.++||||...|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 345678888889999999998752 1 111111 12244444444445566889999999999877
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.. .+.+++..+ |+.++|+|+..+...+...+...+.+. ++|.+..+||.|....
T Consensus 118 T~---------EVeRALrVl---DGaVlvl~aV~GVqsQt~tV~rQ~~ry------~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TF---------EVERALRVL---DGAVLVLDAVAGVESQTETVWRQMKRY------NVPRICFINKMDRMGA 171 (721)
T ss_pred EE---------Eehhhhhhc---cCeEEEEEcccceehhhHHHHHHHHhc------CCCeEEEEehhhhcCC
Confidence 54 233444444 899999998777666555555555544 4679999999998754
No 402
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.05 E-value=4.6e-05 Score=72.33 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC--------CeeeeecCCCCce------------ee-eEEEE----------EeeCCc
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNTT------------TH-EVLGV----------MTKADT 187 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~--------~~~~~~~~~~~~t------------~~-~~~~~----------~~~~~~ 187 (322)
+-.++|+|++||||||++..|.. .++..+...+... .. ..... ....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 34789999999999998766532 2233222222100 00 00000 011356
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
++.|+||||...... .. ...+...+.......-+.+|++++. ....+......+.... +.-+|+||.
T Consensus 301 DlVlIDt~G~~~~d~----~~-~~~L~~ll~~~~~~~~~~LVl~a~~----~~~~l~~~~~~f~~~~----~~~vI~TKl 367 (424)
T PRK05703 301 DVILIDTAGRSQRDK----RL-IEELKALIEFSGEPIDVYLVLSATT----KYEDLKDIYKHFSRLP----LDGLIFTKL 367 (424)
T ss_pred CEEEEeCCCCCCCCH----HH-HHHHHHHHhccCCCCeEEEEEECCC----CHHHHHHHHHHhCCCC----CCEEEEecc
Confidence 899999999863211 11 2223333332223356677888743 2234445555555321 236899999
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH-HHHH
Q 020714 268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT 307 (322)
Q Consensus 268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi-~el~ 307 (322)
|.............. .+. |+.+++ +|++| +++.
T Consensus 368 Det~~~G~i~~~~~~----~~l-Pv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 368 DETSSLGSILSLLIE----SGL-PISYLT--NGQRVPDDIK 401 (424)
T ss_pred cccccccHHHHHHHH----HCC-CEEEEe--CCCCChhhhh
Confidence 986554433222222 233 577777 78886 5544
No 403
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.05 E-value=1.5e-05 Score=67.84 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=43.2
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.++|+||+.+....+ .....+-+.++...-.=+++.++|. .-++++..-+..++..+..--.-..|-+=|++|
T Consensus 97 ~~Y~lFDcPGQVELft~h---~~l~~I~~~Lek~~~rl~~V~LiDs-~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHH---DSLNKIFRKLEKLDYRLVAVNLIDS-HYCSDPSKFISSLLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEecc---chHHHHHHHHHHcCceEEEEEeeec-eeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 568999999998765422 2223333333334333455566665 333444433333332222111113457889999
Q ss_pred CCCCCC
Q 020714 267 VDLVTK 272 (322)
Q Consensus 267 ~Dl~~~ 272 (322)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 999753
No 404
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.01 E-value=3.7e-05 Score=69.19 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=84.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecC----------------CCCceeee-------EEEE-----
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSR----------------KTNTTTHE-------VLGV----- 181 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~----------------~~~~t~~~-------~~~~----- 181 (322)
..+++.++++|-.|+||||.|-.|.. .++..... ..|+..-. ....
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 45689999999999999999877652 11111100 00111100 0000
Q ss_pred -EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccE-----EEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714 182 -MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV-----LMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255 (322)
Q Consensus 182 -~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~-----ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~ 255 (322)
-...+.++.|+||+|-.... ..+...+......+...+. +++++|+..+.+.- ...+.+.....
T Consensus 216 ~Akar~~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal-----~QAk~F~eav~ 285 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL-----SQAKIFNEAVG 285 (340)
T ss_pred HHHHcCCCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH-----HHHHHHHHhcC
Confidence 01135789999999986432 3333334444444444444 88889997543221 22222222111
Q ss_pred CCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714 256 PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 256 ~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~ 308 (322)
-.-+|+||+|..........+...+ +. |+.++. -|+++++|..
T Consensus 286 ---l~GiIlTKlDgtAKGG~il~I~~~l----~~-PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 286 ---LDGIILTKLDGTAKGGIILSIAYEL----GI-PIKFIG--VGEGYDDLRP 328 (340)
T ss_pred ---CceEEEEecccCCCcceeeeHHHHh----CC-CEEEEe--CCCChhhccc
Confidence 1468999999654433333333333 33 688887 6899998864
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=97.97 E-value=0.00045 Score=65.58 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=53.3
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.|+||||..... ......+...... ...+.+++|+|+.. . .......+.+.... ...-+|+|
T Consensus 183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i~~~-v~p~evllVlda~~---g--q~av~~a~~F~~~~---~i~giIlT 248 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-----EELMDELKAIKAA-VNPDEILLVVDAMT---G--QDAVNTAKAFNEAL---GLTGVILT 248 (433)
T ss_pred CCCEEEEeCCCCcccC-----HHHHHHHHHHHHh-hCCCeEEEEEeccc---H--HHHHHHHHHHHhhC---CCCEEEEe
Confidence 4679999999976321 2222222222222 34567799999843 1 22233344444221 12467889
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~ 307 (322)
|.|.............. .+. |+.+++ +|+++++|.
T Consensus 249 KlD~~~rgG~alsi~~~----~~~-PI~fig--~Ge~v~DLe 283 (433)
T PRK10867 249 KLDGDARGGAALSIRAV----TGK-PIKFIG--TGEKLDDLE 283 (433)
T ss_pred CccCcccccHHHHHHHH----HCc-CEEEEe--CCCccccCc
Confidence 99975543433332222 233 577776 366665543
No 406
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.96 E-value=0.00016 Score=66.09 Aligned_cols=128 Identities=15% Similarity=0.214 Sum_probs=77.9
Q ss_pred EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC--CCCcHH---HHH---HHHHHh-c
Q 020714 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--LTSPDS---RVI---RLIERM-G 251 (322)
Q Consensus 181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~--~~~~~~---~~~---~~l~~~-~ 251 (322)
.+...+..+.++|.+|+... -+.....+.+++++|++++.+.- ...++. .+. .+.+.+ .
T Consensus 189 ~F~~k~~~f~~~DvGGQRse------------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSE------------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred EEEeCCCceEEEeCCCcHHH------------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 35566788999999998621 23444567889999999988642 122222 222 222222 3
Q ss_pred ccCCCCCcEEEEEeCCCCCCCh--------------------hHHHHHHHHHhcCCCC--Cc--EEEeecCCCCCHHHHH
Q 020714 252 KQAPPKQKRVLCMNKVDLVTKK--------------------KDLLKVAEQFKHLPGY--ER--IFMTSGLKGAGLKALT 307 (322)
Q Consensus 252 ~~~~~~~p~ivV~NK~Dl~~~~--------------------~~~~~~~~~~~~~~~~--~~--~~~iSa~~g~gi~el~ 307 (322)
.....+.++|+.+||.|+-... ....-+...|...+.. .+ +..+.|..-.+|+.+|
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF 336 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence 3444568899999999986421 0111122223222211 11 4556888888999999
Q ss_pred HHHHHHhhhcCCc
Q 020714 308 QYLMEQFKDLGLK 320 (322)
Q Consensus 308 ~~i~~~l~~~~~~ 320 (322)
+.+.+.+..+.++
T Consensus 337 ~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 337 DAVTDTIIQNNLK 349 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776543
No 407
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=0.00044 Score=61.61 Aligned_cols=147 Identities=17% Similarity=0.254 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC------eeeeecCCCC--------ce----ee-eEEEEE-------------eeC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKTN--------TT----TH-EVLGVM-------------TKA 185 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~------~~~~~~~~~~--------~t----~~-~~~~~~-------------~~~ 185 (322)
.+-+++++|++|+||||++..+... .+..+..... .+ .. ...... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4468999999999999998876431 2221111110 00 00 000000 012
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.++||||...... ..+ ..+...+.. ...+-+++|+|++. ........++.+... .+.=+|+|
T Consensus 154 ~~D~ViIDt~Gr~~~~~----~~l-~el~~~~~~-~~~~~~~LVl~a~~----~~~d~~~~~~~f~~~----~~~~~I~T 219 (270)
T PRK06731 154 RVDYILIDTAGKNYRAS----ETV-EEMIETMGQ-VEPDYICLTLSASM----KSKDMIEIITNFKDI----HIDGIVFT 219 (270)
T ss_pred CCCEEEEECCCCCcCCH----HHH-HHHHHHHhh-hCCCeEEEEEcCcc----CHHHHHHHHHHhCCC----CCCEEEEE
Confidence 56899999999863221 222 223333332 23467899999843 223455666666643 23578999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~e 305 (322)
|.|............... +. |+.+++ +|+++.+
T Consensus 220 KlDet~~~G~~l~~~~~~----~~-Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 220 KFDETASSGELLKIPAVS----SA-PIVLMT--DGQDVKK 252 (270)
T ss_pred eecCCCCccHHHHHHHHH----Cc-CEEEEe--CCCCCCc
Confidence 999877554444433332 33 577777 7777764
No 408
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=6.6e-06 Score=75.28 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC--------e---------eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT--------K---------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~--------~---------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
.-+|+++..-.+||||...+++-- + +.......|.|.......+.+.|.++.++||||...|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 346889999999999999887521 0 11122233556665555577889999999999998775
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
. .+.+.+ +.-|+++.|||++.+...+...++.. ...-+.|-++.+||+|....
T Consensus 117 l---------evercl---rvldgavav~dasagve~qtltvwrq------adk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 L---------EVERCL---RVLDGAVAVFDASAGVEAQTLTVWRQ------ADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred E---------EHHHHH---HHhcCeEEEEeccCCcccceeeeehh------ccccCCchhhhhhhhhhhhh
Confidence 3 122332 33399999999988765544333332 22334678999999998754
No 409
>PRK01889 GTPase RsgA; Reviewed
Probab=97.89 E-value=9.3e-05 Score=68.80 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=55.4
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+.+.|.+++|+++...... ..+..++..+... +.+.++|+||+||.+......+....+ ....+++.+|+++
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~---~~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL---APGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh---CCCCcEEEEECCC
Confidence 5778999999999543322 2344455444433 345789999999986532222222222 2233699999999
Q ss_pred CCCHHHHHHHHH
Q 020714 300 GAGLKALTQYLM 311 (322)
Q Consensus 300 g~gi~el~~~i~ 311 (322)
|.|+++|..+|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999999885
No 410
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.89 E-value=0.00021 Score=66.05 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=58.6
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHH-HHhhcccccEEEEEEeCCCCCC-----Cc---------------HHHHHH
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVNLFEVLMVVFDVHRHLT-----SP---------------DSRVIR 245 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~ad~ii~v~D~s~~~~-----~~---------------~~~~~~ 245 (322)
.+..++.|.|+..+ ..+...+.. .+...-..|.++.|+|+.+-.. .. ...+..
T Consensus 93 ~d~IvIEtsG~a~P------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (341)
T TIGR02475 93 PDHILIETSGLALP------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEE 166 (341)
T ss_pred CCEEEEeCCCCCCH------HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHH
Confidence 56789999998754 333333311 1112234588999999963211 00 000111
Q ss_pred -HHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCC-CCcEEEeecCCCCCHHHHHH
Q 020714 246 -LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-YERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 246 -~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~iSa~~g~gi~el~~ 308 (322)
+...+... .++|+||+|+... .........+...++ ..+++.++ ........++.
T Consensus 167 ~~~~Qi~~A------D~IvlnK~Dl~~~-~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 167 LFEDQLACA------DLVILNKADLLDA-AGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HHHHHHHhC------CEEEEeccccCCH-HHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 22333333 6999999999875 445555666666444 33455554 34445555554
No 411
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.88 E-value=0.0025 Score=60.73 Aligned_cols=132 Identities=17% Similarity=0.294 Sum_probs=77.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee---------------ecC-------------------------------
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---------------VSR------------------------------- 169 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~---------------~~~------------------------------- 169 (322)
...-++|++||.-.+||||.+..+...++.. .+.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 4456789999999999999998876422110 000
Q ss_pred -------CCCceeeeEEEEEeeCC---ccEEEEeCCCcccCC-CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC
Q 020714 170 -------KTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 238 (322)
Q Consensus 170 -------~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~ 238 (322)
..|.|.......+...| .+..++|.||++..- .++....-...+.-+-.++.+.+.||+++-- +..+
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--GSVD 462 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--GSVD 462 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--CCcc
Confidence 11222322222233333 356899999997543 2222222233344444567777888877642 1122
Q ss_pred cH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 239 PD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 239 ~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.+ ..+.+++..+... +...|+|++|+|+...
T Consensus 463 AERSnVTDLVsq~DP~---GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPH---GRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhhHHHHHHhcCCC---CCeeEEEEeecchhhh
Confidence 22 3466666666544 5679999999999865
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.88 E-value=0.0001 Score=69.81 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=53.0
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.++.|+||||..... ......+..... .-..|.+++|+|+..+ ++ .......+.... ...-+|+|
T Consensus 182 ~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~-~~~p~e~lLVvda~tg---q~--~~~~a~~f~~~v---~i~giIlT 247 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID-----EELMEELAAIKE-ILNPDEILLVVDAMTG---QD--AVNTAKTFNERL---GLTGVVLT 247 (428)
T ss_pred CCCEEEEeCCCccccC-----HHHHHHHHHHHH-hhCCceEEEEEeccch---HH--HHHHHHHHHhhC---CCCEEEEe
Confidence 4678999999976321 112222222222 3346888999998532 22 223333333211 12468899
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
|.|.............. .+. |+.+++ +|+.++++
T Consensus 248 KlD~~~~~G~~lsi~~~----~~~-PI~fi~--~Ge~i~dl 281 (428)
T TIGR00959 248 KLDGDARGGAALSVRSV----TGK-PIKFIG--VGEKIDDL 281 (428)
T ss_pred CccCcccccHHHHHHHH----HCc-CEEEEe--CCCChhhC
Confidence 99975543433333333 233 577766 36666554
No 413
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.0017 Score=52.52 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=46.3
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..||+++ +|-=.+.......+.+.++.+-.. ++|.|.++.+-+..+ ..+.+....+. +++ .+
T Consensus 98 ~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~P-------~v~~ik~~~~v--~v~---lt 160 (179)
T COG1618 98 LEEADVII--IDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRHP-------LVQRIKKLGGV--YVF---LT 160 (179)
T ss_pred hhcCCEEE--EecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCCh-------HHHHhhhcCCE--EEE---Ec
Confidence 34467665 776444444334566666666644 467888888776522 12233333222 333 56
Q ss_pred CCCHHHHHHHHHHHhhh
Q 020714 300 GAGLKALTQYLMEQFKD 316 (322)
Q Consensus 300 g~gi~el~~~i~~~l~~ 316 (322)
-.|=+.++..|...+..
T Consensus 161 ~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 161 PENRNRILNEILSVLKG 177 (179)
T ss_pred cchhhHHHHHHHHHhcc
Confidence 66666888888887754
No 414
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.73 E-value=0.00011 Score=64.88 Aligned_cols=136 Identities=18% Similarity=0.332 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC----CeeeeecCCCCceee-------eE-------------EEE------------
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG----TKVAAVSRKTNTTTH-------EV-------------LGV------------ 181 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~----~~~~~~~~~~~~t~~-------~~-------------~~~------------ 181 (322)
+.+.-.+.|+-|+|||||+|.++. ++++..-+.+|-..+ .. .+.
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvra 135 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRA 135 (391)
T ss_pred ccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHH
Confidence 344557899999999999999873 344433333322100 00 000
Q ss_pred -----EeeCCccEEEEeCCCcccCCCCCChhhHHHHH--HHHHhhcccccEEEEEEeCCCCC---C--CcHHHHHHHHHH
Q 020714 182 -----MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV--ESAWSAVNLFEVLMVVFDVHRHL---T--SPDSRVIRLIER 249 (322)
Q Consensus 182 -----~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~~~~~ad~ii~v~D~s~~~---~--~~~~~~~~~l~~ 249 (322)
...+..+..++.|-|+-.+.+ ++.+| ...+..--.-|+++-|+|+-+.. . ..+..+.+....
T Consensus 136 ie~lvqkkGkfD~IllETTGlAnPaP------ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 136 IENLVQKKGKFDHILLETTGLANPAP------IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred HHHHHhcCCCcceEEEeccCCCCcHH------HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 012334678999999976643 22222 12222223449999999985321 1 111123333333
Q ss_pred hcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 250 MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 250 ~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
+... .-+++||.|++.. +........+...
T Consensus 210 iA~A------D~II~NKtDli~~-e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 210 IALA------DRIIMNKTDLVSE-EEVKKLRQRIRSI 239 (391)
T ss_pred Hhhh------heeeeccccccCH-HHHHHHHHHHHHh
Confidence 3322 4678999999986 3344444444433
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.71 E-value=0.0021 Score=53.28 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=41.0
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+..+.++||||..... ......+.... .....+.+++|+|.... . ... .....+.... + ..-+|+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~-~~~~~~~~~lVv~~~~~---~-~~~-~~~~~~~~~~--~-~~~vilt 147 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIK-RVVKPDEVLLVVDAMTG---Q-DAV-NQAKAFNEAL--G-ITGVILT 147 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHH-hhcCCCeEEEEEECCCC---h-HHH-HHHHHHHhhC--C-CCEEEEE
Confidence 5578999999975321 11122222222 22347999999998432 1 112 2333332111 1 2578889
Q ss_pred CCCCCCChhH
Q 020714 266 KVDLVTKKKD 275 (322)
Q Consensus 266 K~Dl~~~~~~ 275 (322)
|.|.......
T Consensus 148 k~D~~~~~g~ 157 (173)
T cd03115 148 KLDGDARGGA 157 (173)
T ss_pred CCcCCCCcch
Confidence 9998765443
No 416
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0002 Score=65.34 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=66.0
Q ss_pred hhhccCceEEEEEcCCCCchhHHHHHHhC------CeeeeecC-CC--C----------ceeeeEEEE------------
Q 020714 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSR-KT--N----------TTTHEVLGV------------ 181 (322)
Q Consensus 133 ~~~~~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~-~~--~----------~t~~~~~~~------------ 181 (322)
.+...++-.|+++|--|+||||.+-.|.. -+.+-+-. ++ + .++.+..+.
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e 174 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE 174 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH
Confidence 34566777899999999999999876541 11111000 00 0 000001000
Q ss_pred ----EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh--hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714 182 ----MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS--AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255 (322)
Q Consensus 182 ----~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~ 255 (322)
+...+.++.|+||.|-+. .....|.+..+ ..-..|.+|+|+|++-+..-. ...+.++....
T Consensus 175 gv~~fKke~fdvIIvDTSGRh~--------qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vd 241 (483)
T KOG0780|consen 175 GVDRFKKENFDVIIVDTSGRHK--------QEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVD 241 (483)
T ss_pred HHHHHHhcCCcEEEEeCCCchh--------hhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhc
Confidence 122467899999999763 22222332222 234469999999997653222 22222322211
Q ss_pred CCCcEEEEEeCCCCCC
Q 020714 256 PKQKRVLCMNKVDLVT 271 (322)
Q Consensus 256 ~~~p~ivV~NK~Dl~~ 271 (322)
- --+++||.|...
T Consensus 242 v---g~vIlTKlDGha 254 (483)
T KOG0780|consen 242 V---GAVILTKLDGHA 254 (483)
T ss_pred c---ceEEEEecccCC
Confidence 0 357899999753
No 417
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00028 Score=73.78 Aligned_cols=161 Identities=15% Similarity=0.146 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe-eeeecC-----CCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH--
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK-VAAVSR-----KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK-- 210 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~-----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-- 210 (322)
-+=-+|+|+||+||||++..---.. ...... .+| |++... .-+..-.++||.|-.....+.+.....
T Consensus 125 LPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhhHHHH
Confidence 3456799999999999986432211 111111 122 333221 224566899999986544322212211
Q ss_pred HHHHHHH---hhcccccEEEEEEeCCCCCCCcHHH-------HHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH
Q 020714 211 VRVESAW---SAVNLFEVLMVVFDVHRHLTSPDSR-------VIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA 280 (322)
Q Consensus 211 ~~~~~~~---~~~~~ad~ii~v~D~s~~~~~~~~~-------~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~ 280 (322)
.++-..+ .....-++||+.+|+++-.+..... +..-+.++...-....|+.+++||.|+.+.-...-.-.
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l 279 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSL 279 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhcc
Confidence 1221122 2336669999999986543333221 22235555544444688999999999998644321111
Q ss_pred --HHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 281 --EQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 281 --~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
..-.+..|. .|+..+....+.-..
T Consensus 280 ~~~~r~qvwG~--tf~~~~~~~~~~~~~ 305 (1188)
T COG3523 280 NKEEREQVWGV--TFPLDARRNANLAAE 305 (1188)
T ss_pred CHHHHhhhcee--ccccccccccchHHH
Confidence 111223343 477777766444333
No 418
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.67 E-value=0.00042 Score=63.01 Aligned_cols=155 Identities=15% Similarity=0.231 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeee-----------------eecCCCCce---------------------eeeEEE
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVA-----------------AVSRKTNTT---------------------THEVLG 180 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~-----------------~~~~~~~~t---------------------~~~~~~ 180 (322)
..+|+++|.-.+|||||+--|+..... ..+....+. .-.+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 469999999999999998766532110 011110000 001111
Q ss_pred EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260 (322)
Q Consensus 181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (322)
++.....-++|+|.+|.+.+...-- |- .--...|..++++-+..+.-.... +.++..-.-.+|+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTv-------FG---MTGH~PDf~MLMiGaNaGIiGmTK------EHLgLALaL~VPV 276 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTV-------FG---MTGHMPDFTMLMIGANAGIIGMTK------EHLGLALALHVPV 276 (641)
T ss_pred eccccceeEEEEeccchhhhhheee-------ec---cccCCCCceEEEecccccceeccH------HhhhhhhhhcCcE
Confidence 2222234578999999875532100 00 001233777777766443211111 1122222225789
Q ss_pred EEEEeCCCCCCChhHHHHHH---HHHhcC-------------------------CCCCcEEEeecCCCCCHHHHHHHH
Q 020714 261 VLCMNKVDLVTKKKDLLKVA---EQFKHL-------------------------PGYERIFMTSGLKGAGLKALTQYL 310 (322)
Q Consensus 261 ivV~NK~Dl~~~~~~~~~~~---~~~~~~-------------------------~~~~~~~~iSa~~g~gi~el~~~i 310 (322)
.+|.+|+|+.+.. .+++.. ..+.+. ....|+|.+|-.+|+|++-|...+
T Consensus 277 fvVVTKIDMCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 277 FVVVTKIDMCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred EEEEEeeccCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 9999999998753 222211 111111 112378999999999998776554
No 419
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.64 E-value=0.00028 Score=58.67 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=39.1
Q ss_pred cEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 224 d~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
|++++|+|+..+.+..+..+.+.+. +... ++|+|+|+||+|+.+. .....+...+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~---~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGG---NKKLVLVLNKIDLVPK-ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccC---CCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence 7899999998776666555544432 2222 4689999999999764 4455556666544
No 420
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.00018 Score=62.88 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee---ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCC-CCChhhH--
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKS-GYSHKDV-- 209 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-~~~~~~~-- 209 (322)
-.++|+-||.+|.|||||++.|.+-.+.. ....+++........+...+ ..++++||.|+..--. .-+...+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 46899999999999999999998765432 12222222222222222223 3578999999974322 1111222
Q ss_pred --HHHHHHHHh----------hc--ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 210 --KVRVESAWS----------AV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 210 --~~~~~~~~~----------~~--~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
...|...+. .+ ...++++|++..+.+.-..- .+ -.++.+.. .+.+|-|+-|.|-...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKsl-DL-vtmk~Lds----kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSL-DL-VTMKKLDS----KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHH-HH-HHHHHHhh----hhhhHHHHHHhhhhhH
Confidence 222332222 22 44578888888765432211 11 11222221 2448888999997764
No 421
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.54 E-value=0.00036 Score=59.78 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
..+|.+|+|+|.+...-.-...+.++-.+++ -+++.+|+||+|-.
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg-----~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELG-----IKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC-----CceEEEEEeeccch
Confidence 6679999999997543332234445555555 24699999999954
No 422
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00038 Score=63.90 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=91.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKA 185 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~ 185 (322)
...+.++.|+|.--+||||+-..+.... .......-|.|...-..++...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3568899999999999999966554200 0011122244555555556667
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCC
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQ 258 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~ 258 (322)
...+.+.|+||.-.+-+ .+..-+..||+-++|+.+..+. ..+...-..+.+..+. .
T Consensus 156 ~~~ftiLDApGHk~fv~------------nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv-----~ 218 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVP------------NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-----K 218 (501)
T ss_pred ceeEEeeccCcccccch------------hhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc-----c
Confidence 78899999999876543 3345567778888888774321 1111111122222222 2
Q ss_pred cEEEEEeCCCCCCCh---hHH----HHHHHHHh--cCC--CCCcEEEeecCCCCCHHHHHH
Q 020714 259 KRVLCMNKVDLVTKK---KDL----LKVAEQFK--HLP--GYERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 259 p~ivV~NK~Dl~~~~---~~~----~~~~~~~~--~~~--~~~~~~~iSa~~g~gi~el~~ 308 (322)
..|+++||+|=.... +.. +.....+. ..+ ....++++|..+|.++++..+
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 389999999965321 111 11111222 112 223579999999999988764
No 423
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.47 E-value=0.00034 Score=46.29 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=29.5
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~D 268 (322)
.-.+++++++|.|..++-.-+....+.++++.. .+++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence 345899999999988777665555666666543 34689999999998
No 424
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.001 Score=57.14 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeee----eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVE 214 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~ 214 (322)
.+|.++|.-.+||||+-.-...+..+ -..++...|++.. ...-.++.+||-||+..+... ...+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i----s~sfinf~v~dfPGQ~~~Fd~s~D~e------- 96 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI----SNSFINFQVWDFPGQMDFFDPSFDYE------- 96 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh----hhhhcceEEeecCCccccCCCccCHH-------
Confidence 56999999999999998766554322 1122222222211 112356899999999876532 2211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-------HHHHHHHHhcCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-------LLKVAEQFKHLP 287 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-------~~~~~~~~~~~~ 287 (322)
..++.+-++++|+|+.+..-+....+...+.+.. ...++..+=+.+.|.|....+.. ..+..+.+++..
T Consensus 97 ---~iF~~~gALifvIDaQddy~eala~L~~~v~ray-kvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g 172 (347)
T KOG3887|consen 97 ---MIFRGVGALIFVIDAQDDYMEALARLHMTVERAY-KVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG 172 (347)
T ss_pred ---HHHhccCeEEEEEechHHHHHHHHHHHHHhhhee-ecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence 2356678999999984322221112222222221 22356667899999998865321 222223333321
Q ss_pred --CCC-cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 288 --GYE-RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 288 --~~~-~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+.. .++-+|-. ...|-|.|..+++.+..
T Consensus 173 le~v~vsf~LTSIy-DHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 173 LEKVQVSFYLTSIY-DHSIFEAFSKVVQKLIP 203 (347)
T ss_pred hccceEEEEEeeec-chHHHHHHHHHHHHHhh
Confidence 111 24445554 44777777777776654
No 425
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.41 E-value=0.0011 Score=62.56 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=68.9
Q ss_pred Eee-CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHh-c
Q 020714 182 MTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERM-G 251 (322)
Q Consensus 182 ~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~-~ 251 (322)
+.. .+..+.++|++|+... -+.+...+...++||+|++.+.-. .........+.+.+ .
T Consensus 230 f~~~~~~~~~~~DvGGqr~e------------RkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 230 FNFSGSRKFRLIDVGGQRSE------------RKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp EEE-TTEEEEEEEETSSGGG------------GGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT
T ss_pred EEeecccccceecCCCCchh------------hhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh
Confidence 445 7788999999999632 134445678889999999986311 11111222333332 2
Q ss_pred ccCCCCCcEEEEEeCCCCCCC-----------------h--hHHHH----HHHHHhcCCC------CCcEEEeecCCCCC
Q 020714 252 KQAPPKQKRVLCMNKVDLVTK-----------------K--KDLLK----VAEQFKHLPG------YERIFMTSGLKGAG 302 (322)
Q Consensus 252 ~~~~~~~p~ivV~NK~Dl~~~-----------------~--~~~~~----~~~~~~~~~~------~~~~~~iSa~~g~g 302 (322)
.....+.|+|+++||.|+... . ...+. +...|..... ..-+..++|.....
T Consensus 298 ~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~ 377 (389)
T PF00503_consen 298 NPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTEN 377 (389)
T ss_dssp SGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHH
T ss_pred CcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHH
Confidence 333346899999999997521 0 11122 2222322211 11245788888888
Q ss_pred HHHHHHHHHHH
Q 020714 303 LKALTQYLMEQ 313 (322)
Q Consensus 303 i~el~~~i~~~ 313 (322)
+..+|+.+.+.
T Consensus 378 ~~~v~~~v~~~ 388 (389)
T PF00503_consen 378 IRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhcCc
Confidence 88888877654
No 426
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0023 Score=60.12 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+.++.|+||+|...... .+...+.. +......|.|++|-.+--+ ++.-..+...-+.+.....|..-.-+++
T Consensus 465 ~gfDVvLiDTAGR~~~~~-----~lm~~l~k-~~~~~~pd~i~~vgealvg-~dsv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNA-----PLMTSLAK-LIKVNKPDLILFVGEALVG-NDSVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred cCCCEEEEeccccccCCh-----hHHHHHHH-HHhcCCCceEEEehhhhhC-cHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 467899999999875433 12222222 2345777999999877433 2222344444455555544444567999
Q ss_pred eCCCCCCC
Q 020714 265 NKVDLVTK 272 (322)
Q Consensus 265 NK~Dl~~~ 272 (322)
+|+|-++.
T Consensus 538 tk~dtv~d 545 (587)
T KOG0781|consen 538 TKFDTVDD 545 (587)
T ss_pred Eeccchhh
Confidence 99998764
No 427
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.29 E-value=0.0015 Score=60.06 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCC
Q 020714 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289 (322)
Q Consensus 210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+........+..+|+||.|+|+.++.+.--..+.+++.... .++..|+|+||+|+++. ++.+.+..++...++.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~----gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~pt 208 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAH----GNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPT 208 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhcc----CCceEEEEeehhccCCH-HHHHHHHHHHHhhCCc
Confidence 344555555677889999999998877665555555554333 24669999999999885 7788999999887654
Q ss_pred CcEEEeecC
Q 020714 290 ERIFMTSGL 298 (322)
Q Consensus 290 ~~~~~iSa~ 298 (322)
. +|..|..
T Consensus 209 v-~fkast~ 216 (435)
T KOG2484|consen 209 V-AFKASTQ 216 (435)
T ss_pred c-eeecccc
Confidence 3 4444443
No 428
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.23 E-value=0.0037 Score=49.94 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=55.5
Q ss_pred EEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 143 GIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 143 ~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..-|.+|+||||+.-.+. +..+..+...++... -..++.++|||+.... ..
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~~--------------~~ 60 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGISD--------------NV 60 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCCH--------------HH
Confidence 345689999999965443 222333332221111 1167899999975421 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
...+..+|.++++++.+... . ......++.+... ....++.+|+|+++-.
T Consensus 61 ~~~l~~aD~vviv~~~~~~s-~--~~~~~~l~~l~~~-~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 61 LDFFLAADEVIVVTTPEPTS-I--TDAYALIKKLAKQ-LRVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHhCCeEEEEcCCChhH-H--HHHHHHHHHHHHh-cCCCCEEEEEeCCCCH
Confidence 23466779999999884321 1 1222333333221 1234688999999743
No 429
>PRK13695 putative NTPase; Provisional
Probab=97.20 E-value=0.01 Score=49.30 Aligned_cols=82 Identities=12% Similarity=0.278 Sum_probs=44.3
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+++ +++|--......+......+..+... +.|++++.||.... .+...+...... .++.+
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~-------~~~~~i~~~~~~-~i~~~-- 156 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVH-------PFVQEIKSRPGG-RVYEL-- 156 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhH-------HHHHHHhccCCc-EEEEE--
Confidence 34566776 57884222112223344555554432 46799999985321 122333333333 46666
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 020714 298 LKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~ 315 (322)
+.+|=+++...|.+.++
T Consensus 157 -~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 -TPENRDSLPFEILNRLK 173 (174)
T ss_pred -cchhhhhHHHHHHHHHh
Confidence 45566788888877654
No 430
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.15 E-value=0.0096 Score=49.53 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=41.1
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
...++.++|||+... . .....+..+|.+++++..+... ......+++.+... +.|+.+|+
T Consensus 91 ~~~d~viiDtpp~~~-------~-------~~~~~l~~aD~vliv~~~~~~~---~~~~~~~~~~l~~~---~~~~~vV~ 150 (179)
T cd03110 91 EGAELIIIDGPPGIG-------C-------PVIASLTGADAALLVTEPTPSG---LHDLERAVELVRHF---GIPVGVVI 150 (179)
T ss_pred cCCCEEEEECcCCCc-------H-------HHHHHHHcCCEEEEEecCCccc---HHHHHHHHHHHHHc---CCCEEEEE
Confidence 467899999996542 1 1123346789999999885321 12233333333322 34588999
Q ss_pred eCCCCCC
Q 020714 265 NKVDLVT 271 (322)
Q Consensus 265 NK~Dl~~ 271 (322)
||+|...
T Consensus 151 N~~~~~~ 157 (179)
T cd03110 151 NKYDLND 157 (179)
T ss_pred eCCCCCc
Confidence 9999754
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.13 E-value=0.0038 Score=47.43 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=52.1
Q ss_pred EEEEc-CCCCchhHHHHHHhC-------CeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 142 VGIIG-APNAGKSSIINYMVG-------TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 142 v~v~G-~~~vGKStlin~l~~-------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
|+++| ..|+||||+.-.|.. .++.-..-.+. .+.++.++|||+....
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~------------- 56 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE------------- 56 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH-------------
Confidence 34444 689999998655432 22222211111 1227899999986421
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
.....+..+|.++++++.+......-..+..+++..+.. +..++.+|+|+
T Consensus 57 -~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~--~~~~~~lVvNr 106 (106)
T cd03111 57 -VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYS--LPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCC--CcCceEEEecC
Confidence 112335667999999987432211112344444444322 13457788885
No 432
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.08 E-value=0.0041 Score=46.77 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=39.2
Q ss_pred EEEEc-CCCCchhHHHHHHhCC------eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 142 VGIIG-APNAGKSSIINYMVGT------KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 142 v~v~G-~~~vGKStlin~l~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
+++.| ..|+||||+.-.|... ++..+...+ ..++.++|+|+....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~--------------~~d~viiD~p~~~~~-------------- 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP--------------QYDYIIIDTPPSLGL-------------- 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCC--------------CCCEEEEeCcCCCCH--------------
Confidence 56666 6799999987655321 221111111 167899999986421
Q ss_pred HHHhhcccccEEEEEEeCC
Q 020714 215 SAWSAVNLFEVLMVVFDVH 233 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s 233 (322)
.....+..+|.++++++.+
T Consensus 54 ~~~~~l~~ad~viv~~~~~ 72 (104)
T cd02042 54 LTRNALAAADLVLIPVQPS 72 (104)
T ss_pred HHHHHHHHCCEEEEeccCC
Confidence 1113445679999999874
No 433
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.04 E-value=0.012 Score=48.64 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=56.0
Q ss_pred EEcCCCCchhHHHHHHh------CCeeeeecCCCC-ceeeeE--------EEEEeeCCccEEEEeCCCcccCCCCCChhh
Q 020714 144 IIGAPNAGKSSIINYMV------GTKVAAVSRKTN-TTTHEV--------LGVMTKADTQICIFDTPGLMLNKSGYSHKD 208 (322)
Q Consensus 144 v~G~~~vGKStlin~l~------~~~~~~~~~~~~-~t~~~~--------~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 208 (322)
.-+..|+||||+.-.|. |.++..+...+. ...... ......-..++.++||||.... .
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------~ 77 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------G 77 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH-------H
Confidence 34579999999975543 334444433331 111100 0000001127899999975421 1
Q ss_pred HHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 209 VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 209 ~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
....+..+|.++++++.+...- .....+++.+.... .....+|+|+.|...
T Consensus 78 -------~~~~l~~ad~viiv~~~~~~s~---~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~ 128 (179)
T cd02036 78 -------FITAIAPADEALLVTTPEISSL---RDADRVKGLLEALG--IKVVGVIVNRVRPDM 128 (179)
T ss_pred -------HHHHHHhCCcEEEEeCCCcchH---HHHHHHHHHHHHcC--CceEEEEEeCCcccc
Confidence 1123457799999998854221 12223333333221 124679999998654
No 434
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.00 E-value=0.0064 Score=44.44 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=41.8
Q ss_pred EEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcc
Q 020714 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
+++.|.+|+||||+...+...-.. .+.. . ...+ ++.++|+||........ ......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v--~~~~--d~iivD~~~~~~~~~~~-----------~~~~~~ 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR----V--LLID--DYVLIDTPPGLGLLVLL-----------CLLALL 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCe----E--EEEC--CEEEEeCCCCccchhhh-----------hhhhhh
Confidence 678899999999998877542110 1100 0 1111 78999999876321100 123345
Q ss_pred cccEEEEEEeCCC
Q 020714 222 LFEVLMVVFDVHR 234 (322)
Q Consensus 222 ~ad~ii~v~D~s~ 234 (322)
.+|.++++++...
T Consensus 58 ~~~~vi~v~~~~~ 70 (99)
T cd01983 58 AADLVIIVTTPEA 70 (99)
T ss_pred hCCEEEEecCCch
Confidence 6799999998753
No 435
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.99 E-value=0.0074 Score=54.07 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=54.9
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCC
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g 300 (322)
.+.|-+++|+.+..+. .....+..+|-..... +..-++|+||+|+........+.........+. +++.+|++++
T Consensus 78 ~n~d~~iiIvs~~~P~-~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy-~v~~~s~~~~ 152 (301)
T COG1162 78 ANNDQAIIVVSLVDPD-FNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY-PVLFVSAKNG 152 (301)
T ss_pred cccceEEEEEeccCCC-CCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCe-eEEEecCcCc
Confidence 3346666666664442 2223344455444444 333688899999997644332233333444566 5999999999
Q ss_pred CCHHHHHHHHHHH
Q 020714 301 AGLKALTQYLMEQ 313 (322)
Q Consensus 301 ~gi~el~~~i~~~ 313 (322)
.|+++|.+++...
T Consensus 153 ~~~~~l~~~l~~~ 165 (301)
T COG1162 153 DGLEELAELLAGK 165 (301)
T ss_pred ccHHHHHHHhcCC
Confidence 9999999887643
No 436
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.99 E-value=0.005 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
|++.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999998653
No 437
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00044 Score=57.33 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=33.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFD 193 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D 193 (322)
.+.-+++.|++||||||++++|+... ...-+...||+....+. .+|..+.|++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gE--v~G~dY~Fvs 55 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGE--VDGVDYFFVT 55 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCC--cCCceeEeCC
Confidence 35668899999999999999998766 32223334554433322 3345555444
No 438
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.95 E-value=0.0033 Score=59.57 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=63.0
Q ss_pred HHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCC
Q 020714 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289 (322)
Q Consensus 210 ~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+..++.|..+..+|+|+.++|+.++.-..-..+..++..... .+..++++||+||... .....+..+|.+.+
T Consensus 162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~----~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~n-- 234 (562)
T KOG1424|consen 162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP----SKANVLLVNKADLLPP-EQRVAWAEYFRQNN-- 234 (562)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcccc----ccceEEEEehhhcCCH-HHHHHHHHHHHhcC--
Confidence 4467888999999999999999988765555566666666553 3558999999999886 34556777776654
Q ss_pred CcEEEeecCC
Q 020714 290 ERIFMTSGLK 299 (322)
Q Consensus 290 ~~~~~iSa~~ 299 (322)
.++++.||..
T Consensus 235 i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 IPVVFFSALA 244 (562)
T ss_pred ceEEEEeccc
Confidence 4699999986
No 439
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.012 Score=55.07 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=65.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCC----------------CCceeeeEEE---E---------
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRK----------------TNTTTHEVLG---V--------- 181 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~----------------~~~t~~~~~~---~--------- 181 (322)
...+..|+++|--|+||||.+-.|. +.++.-++.. .++....... .
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 4567889999999999999976553 1222111111 1111111000 0
Q ss_pred -EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714 182 -MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260 (322)
Q Consensus 182 -~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (322)
....+.++.|+||+|-..- .+.+...+... ...-..|=+++|+|+..+ ++ ....-+.+...-. -.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~i-----de~Lm~El~~I-k~~~~P~E~llVvDam~G---Qd--A~~~A~aF~e~l~---it 242 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHI-----DEELMDELKEI-KEVINPDETLLVVDAMIG---QD--AVNTAKAFNEALG---IT 242 (451)
T ss_pred HHHHcCCCEEEEeCCCcccc-----cHHHHHHHHHH-HhhcCCCeEEEEEecccc---hH--HHHHHHHHhhhcC---Cc
Confidence 0112458999999997621 12222223322 234556889999999653 22 2223333332211 13
Q ss_pred EEEEeCCCCCCC
Q 020714 261 VLCMNKVDLVTK 272 (322)
Q Consensus 261 ivV~NK~Dl~~~ 272 (322)
=+|+||.|....
T Consensus 243 GvIlTKlDGdaR 254 (451)
T COG0541 243 GVILTKLDGDAR 254 (451)
T ss_pred eEEEEcccCCCc
Confidence 588999998644
No 440
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.003 Score=59.62 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=66.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCce---------------eeeEEEEE----------------eeC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------------THEVLGVM----------------TKA 185 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t---------------~~~~~~~~----------------~~~ 185 (322)
.+.-++.++..-.-|||||...|..+.-...+...|.+ ...+...+ ...
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 34455677777889999999998754322222222222 11111111 012
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+.-+.++|.||...|... .-..++..|+.++|+|.-++.--+.+.+... .+.. .+.-++++|
T Consensus 97 ~FLiNLIDSPGHVDFSSE------------VTAALRVTDGALVVVDcv~GvCVQTETVLrQ--A~~E----RIkPvlv~N 158 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSE------------VTAALRVTDGALVVVDCVSGVCVQTETVLRQ--AIAE----RIKPVLVMN 158 (842)
T ss_pred ceeEEeccCCCcccchhh------------hhheeEeccCcEEEEEccCceEechHHHHHH--HHHh----hccceEEee
Confidence 345689999999977431 1134567799999999866554444433321 1111 122478999
Q ss_pred CCCCC
Q 020714 266 KVDLV 270 (322)
Q Consensus 266 K~Dl~ 270 (322)
|.|..
T Consensus 159 K~DRA 163 (842)
T KOG0469|consen 159 KMDRA 163 (842)
T ss_pred hhhHH
Confidence 99964
No 441
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=56.03 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE 177 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~ 177 (322)
.+.-++++|++|+|||||+++|....-......+.||+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 3556899999999999999999875322222334555543
No 442
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.84 E-value=0.009 Score=55.01 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=69.5
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
...+..+.-+|++|.|+|+.++..-.-..+..+++. ..+.+-+|+|+|||||++. -+...+...+...++-. .|
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkk----e~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTi-Af 278 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK----EKPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTI-AF 278 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhh----cCCcceeEEEeeccccccH-HHHHHHHHHHhhhCcce-ee
Confidence 344556688899999999988765543344444444 4456779999999999874 56677777777766543 46
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
-.|-.+..|=..|++.+.++..-+
T Consensus 279 HAsi~nsfGKgalI~llRQf~kLh 302 (572)
T KOG2423|consen 279 HASINNSFGKGALIQLLRQFAKLH 302 (572)
T ss_pred ehhhcCccchhHHHHHHHHHHhhc
Confidence 667777778888888877766543
No 443
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.80 E-value=0.0085 Score=54.96 Aligned_cols=86 Identities=23% Similarity=0.316 Sum_probs=62.5
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.+.....+...|+++.|+|+..+.+.....+ ..+.. ..+.++|+||+|+.+. ....++...+....+. ..
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l----~~~v~----~k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~~-~~ 94 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPEL----ERIVK----EKPKLLVLNKADLAPK-EVTKKWKKYFKKEEGI-KP 94 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccH----HHHHc----cCCcEEEEehhhcCCH-HHHHHHHHHHHhcCCC-cc
Confidence 3444556788899999999987766655333 33322 2346999999999885 4577888888877655 47
Q ss_pred EEeecCCCCCHHHHHH
Q 020714 293 FMTSGLKGAGLKALTQ 308 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~ 308 (322)
+.+|++++.+...+..
T Consensus 95 ~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 95 IFVSAKSRQGGKKIRK 110 (322)
T ss_pred EEEEeecccCccchHH
Confidence 8899998888887774
No 444
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.78 E-value=0.0011 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
+|+|.|+||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 445
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+..++|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35667889999999999999999754
No 446
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.70 E-value=0.026 Score=50.73 Aligned_cols=118 Identities=12% Similarity=0.126 Sum_probs=70.0
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC------------C
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN------------K 201 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~------------~ 201 (322)
+...+..+++++|++|.|||++++++...+-.... .+. ...++..+.+|.--.. .
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d--~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD--EDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC--CCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 55667788999999999999999999876532211 111 1234555666522100 0
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC----CCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH----LTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~----~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
+..+...........+..++...+=++|+|--++ .......+..+++.++.. -.+|+|.|+++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCeEEeccH
Confidence 0111122223333444566777888999996433 222334677788887643 35789988865
No 447
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.65 E-value=0.0017 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCe
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+.+.|++|+|||++++.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987643
No 448
>PHA02518 ParA-like protein; Provisional
Probab=96.60 E-value=0.027 Score=47.92 Aligned_cols=70 Identities=7% Similarity=0.043 Sum_probs=38.5
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEE
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCM 264 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~ 264 (322)
..++.|+||||-.. . .....+..+|.+|+++..+...-..-..+..++....... ...+ ..++.
T Consensus 76 ~~d~viiD~p~~~~--------~------~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~ 140 (211)
T PHA02518 76 GYDYVVVDGAPQDS--------E------LARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFII 140 (211)
T ss_pred cCCEEEEeCCCCcc--------H------HHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEEE
Confidence 46889999998531 1 1123455679999999885322111223444444433221 1233 45777
Q ss_pred eCCCCC
Q 020714 265 NKVDLV 270 (322)
Q Consensus 265 NK~Dl~ 270 (322)
|+.+..
T Consensus 141 n~~~~~ 146 (211)
T PHA02518 141 SRAIKN 146 (211)
T ss_pred eccCCc
Confidence 887643
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.60 E-value=0.0017 Score=56.06 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~ 165 (322)
..+=-++|+|++|+|||||+|.+.+-..+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34456899999999999999999775433
No 450
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.57 E-value=0.0076 Score=57.58 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
..++++|||..++|||+|+-+++...+..... +...+.....+......-+.+.|-.| ... .
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~-~~~------a---------- 90 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGG-HPD------A---------- 90 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccC-Cch------h----------
Confidence 45789999999999999998876555433222 22222222222333344556677666 211 0
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCC--hhHHHH-HHHHHhcCCCCCcEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTK--KKDLLK-VAEQFKHLPGYERIF 293 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~--~~~~~~-~~~~~~~~~~~~~~~ 293 (322)
......|.+|+||...+..+. ..+..+-..+... .....|+++++++.=.... +...+. ......+...+ .+|
T Consensus 91 Qft~wvdavIfvf~~~d~~s~--q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krc-sy~ 167 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSF--QAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRC-SYY 167 (749)
T ss_pred hhhhhccceEEEEEeccccCH--HHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCcc-cee
Confidence 223445888999988654333 2333333333322 2345677888877543322 122222 23334455555 489
Q ss_pred EeecCCCCCHHHHHHHHHHHhhh
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++++.+|.+++..|+.+...+..
T Consensus 168 et~atyGlnv~rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 168 ETCATYGLNVERVFQEVAQKIVQ 190 (749)
T ss_pred ecchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999988877654
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0018 Score=56.16 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
.+=-|+++|++|+|||||+|.+.|-..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344588999999999999999987543
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.56 E-value=0.0016 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCe
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.++++|++|+|||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48899999999999999998753
No 453
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.54 E-value=0.032 Score=46.09 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=30.7
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC-CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714 227 MVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV-DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (322)
Q Consensus 227 i~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi 303 (322)
++|+|--.+.......+...+..+-. +++|+|.++-+. +..- .+.+....+. .++.++..+.+-+
T Consensus 98 liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~--------l~~i~~~~~~-~i~~vt~~NRd~l 163 (168)
T PF03266_consen 98 LIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPF--------LEEIKRRPDV-KIFEVTEENRDAL 163 (168)
T ss_dssp EEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCC--------HHHHHTTTTS-EEEE--TTTCCCH
T ss_pred EEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHH--------HHHHHhCCCc-EEEEeChhHHhhH
Confidence 77788655444443455565555554 356788888887 4221 2334443333 5788876655444
No 454
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.53 E-value=0.0017 Score=64.83 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=52.1
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh-cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
..++++|.||+..-..+-.+..+...++..... +.....+++.+...+ .+....++++..+..+..+...+-|++
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an----~d~ats~alkiarevDp~g~RTigvit 207 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN----SDIATSPALVVAREVDPGGSRTLEVIT 207 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh----hhhhcCHHHHHHHhhCCCccchhHHhh
Confidence 467899999997665544445555555555443 466677777776633 223333445555544455667899999
Q ss_pred CCCCCCC
Q 020714 266 KVDLVTK 272 (322)
Q Consensus 266 K~Dl~~~ 272 (322)
|.|+.+.
T Consensus 208 K~Dlmdk 214 (657)
T KOG0446|consen 208 KFDFMDK 214 (657)
T ss_pred hHHhhhc
Confidence 9998864
No 455
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.52 E-value=0.002 Score=53.30 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
.+-.++|+|++|+|||||+|.+.|-..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 445799999999999999999987443
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.51 E-value=0.0025 Score=43.20 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~ 160 (322)
..+|.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999864
No 457
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.49 E-value=0.015 Score=50.22 Aligned_cols=105 Identities=8% Similarity=0.107 Sum_probs=60.7
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+..+.|+||.|..... .. ..+..+|++|+=.-.+.---.+-.....++.+.........|.-++.|
T Consensus 83 ~~d~VlvDleG~as~~--------~~------~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~T 148 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--------ND------YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFT 148 (231)
T ss_pred CCCEEEEeCCCCCchh--------HH------HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEe
Confidence 4578999999975211 10 123457888765544221111112555667766655556788999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHH
Q 020714 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~ 308 (322)
++.-..... .......+.+ + .|++.+.-.+...+.+++.
T Consensus 149 r~~~~~~~~-~~~~~~e~~~--~-lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 149 RVPAARLTR-AQRIISEQLE--S-LPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cCCcchhhH-HHHHHHHHHh--c-CCccccccccHHHHHHHHH
Confidence 998442222 2222333322 2 3688888887777777665
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.42 E-value=0.0033 Score=50.18 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
++++|++|+|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 459
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=96.42 E-value=0.015 Score=49.81 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=41.5
Q ss_pred cCCCCCcEEEEEeCCCCCCChh-----------------HHH---H-HHHHHhcCCCCC-c---EEEeecCCCCCHHHHH
Q 020714 253 QAPPKQKRVLCMNKVDLVTKKK-----------------DLL---K-VAEQFKHLPGYE-R---IFMTSGLKGAGLKALT 307 (322)
Q Consensus 253 ~~~~~~p~ivV~NK~Dl~~~~~-----------------~~~---~-~~~~~~~~~~~~-~---~~~iSa~~g~gi~el~ 307 (322)
....+.++|+.+||.|+....- +.. + +.+-+.+.++.. . -.++.|..-+||.-+|
T Consensus 262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF 341 (359)
T KOG0085|consen 262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF 341 (359)
T ss_pred ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence 3445678999999999985421 111 1 112222322221 1 2457788889999999
Q ss_pred HHHHHHhhhcCC
Q 020714 308 QYLMEQFKDLGL 319 (322)
Q Consensus 308 ~~i~~~l~~~~~ 319 (322)
..+.+.+....+
T Consensus 342 aaVkDtiLq~~L 353 (359)
T KOG0085|consen 342 AAVKDTILQLNL 353 (359)
T ss_pred HHHHHHHHHhhh
Confidence 999888776554
No 460
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.35 E-value=0.0031 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
.+-.++|+|++|+|||||++.|.+...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 455689999999999999999988653
No 461
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.30 E-value=0.039 Score=43.19 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+++.|++|+|||++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999998764
No 462
>PRK07261 topology modulation protein; Provisional
Probab=96.28 E-value=0.0034 Score=52.10 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+|+|+||+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 463
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.25 E-value=0.024 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=21.1
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHh
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~ 160 (322)
......+++++|+.++|||||...|.
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred hccCCcEEEEECCcCcCHHHHHHHHH
Confidence 34567889999999999999975554
No 464
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.24 E-value=0.0046 Score=52.68 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..++++|++|+|||||++.|.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556899999999999999999875
No 465
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.23 E-value=0.0038 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+.+..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753
No 466
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.23 E-value=0.0036 Score=49.88 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 020714 142 VGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~ 161 (322)
|+++|+||+||||++..|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.21 E-value=0.0045 Score=43.05 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
+++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998754
No 468
>PRK08118 topology modulation protein; Reviewed
Probab=96.20 E-value=0.0041 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+|+|+||+|||||...|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 469
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.19 E-value=0.0031 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999754
No 470
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0042 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
+|+|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 471
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0047 Score=52.53 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=23.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
..+=.++++|++|+|||||+.++-+-+.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3455689999999999999999876553
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.16 E-value=0.0062 Score=51.20 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++++|++|+|||||++.|.+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999998864
No 473
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.11 E-value=0.0044 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.7
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
|+|.|.|||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 474
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.09 E-value=0.06 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.0
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+...+.++++||+.++||||+...|++
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 99 ESSYGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred hhccCCEEEEECCCccchHHHHHHHHH
Confidence 445688999999999999999887763
No 475
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.08 E-value=0.012 Score=51.13 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=23.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..++..++|.|++|+|||||++.|.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999988753
No 476
>PRK08233 hypothetical protein; Provisional
Probab=96.02 E-value=0.0061 Score=50.68 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+..|+|.|.||+|||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999998753
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.01 E-value=0.0056 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++..|+|+|.+|+|||||++.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999988753
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.94 E-value=0.0064 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999664
No 479
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.19 Score=42.73 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
-|.+.|+||+||||+.+-|..
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 378999999999999987753
No 480
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.89 E-value=0.095 Score=44.91 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=26.4
Q ss_pred cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 222 ~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
.||.++++++.+...-..-..+.++++.+.... ......+|.|+.+..
T Consensus 141 ~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~-~~~~~gvv~N~~~~~ 188 (212)
T cd02117 141 KADEIYIVTSGEFMALYAANNICKGIRKYAKSG-GVRLGGLICNSRNTD 188 (212)
T ss_pred cCcEEEEEecccHHHHHHHHHHHHHHHHhCccc-CCcEEEEEEeCCCCc
Confidence 578888888764321111124455566654321 112245999999954
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.87 E-value=0.0066 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++|+|++|+||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.86 E-value=0.0075 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=23.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345678999999999999999998854
No 483
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.86 E-value=0.057 Score=47.07 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=38.8
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
++.++.|+||||... . .....+..+|.+|+.+..+...-..-......+........++.|..++.
T Consensus 82 ~~yD~iiID~pp~~~-------~-------~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~ 147 (231)
T PRK13849 82 QGFDYALADTHGGSS-------E-------LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILR 147 (231)
T ss_pred CCCCEEEEeCCCCcc-------H-------HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 357899999999652 1 11233456799988887632111111123233333322223356778999
Q ss_pred eCCC
Q 020714 265 NKVD 268 (322)
Q Consensus 265 NK~D 268 (322)
|.++
T Consensus 148 ~~~~ 151 (231)
T PRK13849 148 QRVP 151 (231)
T ss_pred Eecc
Confidence 9987
No 484
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.85 E-value=0.0078 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..++++|+||+||||++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999999999998764
No 485
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0073 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+ .++++|++|+|||||++.+.|..
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 79999999999999999998753
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.79 E-value=0.0064 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
|+++|++|+|||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
No 487
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.79 E-value=0.0089 Score=49.56 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
....++|+|++|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457899999999999999998753
No 488
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.053 Score=47.00 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=62.8
Q ss_pred eEEEEEcCCCC--chhHHHHHHhCCeeeeecCCCC-ceeeeEEEEEeeCCccEEEEeCCCcc-cCCCCCChhhHHHHHHH
Q 020714 140 VAVGIIGAPNA--GKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVES 215 (322)
Q Consensus 140 ~~v~v~G~~~v--GKStlin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~~ 215 (322)
..++++|.+|| ||-+++.+|....+...+.... +..+.+..--.+....+.+.=.+-.. .+.+
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp------------- 71 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP------------- 71 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-------------
Confidence 46789999999 9999999998776543332222 22222221111111122222222111 1111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 278 (322)
..........+++|||.+...+. ..+..|+......... -.++++||+|.+++.-...+
T Consensus 72 n~~~a~pl~a~vmvfdlse~s~l--~alqdwl~htdinsfd--illcignkvdrvphhlahde 130 (418)
T KOG4273|consen 72 NAEIAEPLQAFVMVFDLSEKSGL--DALQDWLPHTDINSFD--ILLCIGNKVDRVPHHLAHDE 130 (418)
T ss_pred CcccccceeeEEEEEeccchhhh--HHHHhhccccccccch--hheecccccccccchhhhhH
Confidence 11112233678899999653222 3455666543333221 25789999999876443333
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.78 E-value=0.0088 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+-.++++|++|+|||||++.++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4566799999999999999998863
No 490
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.0076 Score=49.42 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~ 160 (322)
+|++.|.||+||||+.+.|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999886
No 491
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.73 E-value=0.0094 Score=51.01 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998854
No 492
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.73 E-value=0.0079 Score=48.16 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+|+|+.|+|||||+..|.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 493
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.72 E-value=0.0094 Score=51.30 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=23.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345578999999999999999998854
No 494
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.72 E-value=0.064 Score=47.66 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=40.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCee-eeecCCC-CceeeeEEEEE---eeCCccEEEEeCCCccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT-NTTTHEVLGVM---TKADTQICIFDTPGLML 199 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~-~~~~~~~-~~t~~~~~~~~---~~~~~~~~l~DtpG~~~ 199 (322)
.....|.|+|+..+|||.|+|.|++... ..++... ..|...+.-.. ...+..+.++||.|+..
T Consensus 19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp SBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 4456788999999999999999987432 1233222 33433322111 11345789999999976
No 495
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.71 E-value=0.009 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999998754
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.008 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
=-++++|++|+|||||++.+.|-.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347799999999999999998754
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.71 E-value=0.0095 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999998853
No 498
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.70 E-value=0.0097 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~ 160 (322)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4568999999999999999986
No 499
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0099 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=22.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999998753
No 500
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.68 E-value=0.0098 Score=49.71 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchhHHHHHHh
Q 020714 140 VAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~ 160 (322)
..|+++|+||+||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999987
Done!