Query 020714
Match_columns 322
No_of_seqs 290 out of 3070
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 99.9 1.1E-24 3.7E-29 197.3 17.9 176 135-317 6-183 (308)
2 2gj8_A MNME, tRNA modification 99.9 2.1E-24 7.3E-29 178.7 15.0 164 138-316 3-166 (172)
3 4dcu_A GTP-binding protein ENG 99.9 6.5E-25 2.2E-29 209.1 13.5 247 45-319 102-372 (456)
4 1wf3_A GTP-binding protein; GT 99.9 3.6E-24 1.2E-28 193.0 17.5 169 138-317 6-174 (301)
5 4dkx_A RAS-related protein RAB 99.9 4.1E-25 1.4E-29 189.9 9.0 164 138-316 12-176 (216)
6 2hjg_A GTP-binding protein ENG 99.9 9.3E-25 3.2E-29 206.9 12.1 245 45-319 82-352 (436)
7 4dhe_A Probable GTP-binding pr 99.9 1.1E-23 3.8E-28 181.2 16.6 175 137-317 27-212 (223)
8 3q72_A GTP-binding protein RAD 99.9 4.7E-24 1.6E-28 174.6 13.5 163 139-317 2-165 (166)
9 3pqc_A Probable GTP-binding pr 99.9 6.1E-23 2.1E-27 172.3 20.2 171 137-316 21-194 (195)
10 1mky_A Probable GTP-binding pr 99.9 5.8E-24 2E-28 201.6 15.3 252 45-319 81-358 (439)
11 2nzj_A GTP-binding protein REM 99.9 6.7E-24 2.3E-28 175.0 13.5 167 138-317 3-170 (175)
12 2dyk_A GTP-binding protein; GT 99.9 5.7E-24 1.9E-28 173.1 12.7 159 140-314 2-160 (161)
13 2g6b_A RAS-related protein RAB 99.9 1.1E-23 3.9E-28 174.6 14.7 169 136-319 7-177 (180)
14 1svi_A GTP-binding protein YSX 99.9 7E-23 2.4E-27 172.3 19.5 169 137-315 21-194 (195)
15 2e87_A Hypothetical protein PH 99.9 1.8E-23 6.1E-28 193.1 17.3 172 137-316 165-336 (357)
16 2qu8_A Putative nucleolar GTP- 99.9 4.2E-23 1.4E-27 178.6 18.5 176 137-317 27-206 (228)
17 3gee_A MNME, tRNA modification 99.9 2.5E-23 8.5E-28 198.2 17.6 166 137-315 231-397 (476)
18 1z0j_A RAB-22, RAS-related pro 99.9 5.4E-24 1.8E-28 174.6 11.3 164 138-316 5-169 (170)
19 2fg5_A RAB-22B, RAS-related pr 99.9 7.6E-24 2.6E-28 178.3 12.1 167 136-317 20-187 (192)
20 3tw8_B RAS-related protein RAB 99.9 3.1E-23 1.1E-27 171.8 15.4 164 137-317 7-172 (181)
21 1r2q_A RAS-related protein RAB 99.9 8.4E-24 2.9E-28 173.3 11.1 164 138-316 5-169 (170)
22 2gf9_A RAS-related protein RAB 99.9 1.9E-23 6.5E-28 175.2 13.2 167 136-317 19-186 (189)
23 2iwr_A Centaurin gamma 1; ANK 99.9 1.3E-23 4.4E-28 174.2 11.8 160 138-317 6-170 (178)
24 2oil_A CATX-8, RAS-related pro 99.9 2.1E-23 7.1E-28 175.5 13.1 168 135-317 21-189 (193)
25 3tkl_A RAS-related protein RAB 99.9 5.4E-23 1.9E-27 173.0 15.5 167 135-317 12-180 (196)
26 1z0f_A RAB14, member RAS oncog 99.9 2.2E-23 7.4E-28 172.5 12.6 166 136-316 12-178 (179)
27 1zbd_A Rabphilin-3A; G protein 99.9 4.1E-23 1.4E-27 175.0 14.3 164 138-316 7-171 (203)
28 2il1_A RAB12; G-protein, GDP, 99.9 2.8E-23 9.7E-28 174.8 13.0 166 136-316 23-190 (192)
29 2efe_B Small GTP-binding prote 99.9 2.7E-23 9.1E-28 172.5 12.5 166 137-317 10-176 (181)
30 1c1y_A RAS-related protein RAP 99.9 3.7E-23 1.3E-27 169.1 13.1 162 138-315 2-166 (167)
31 1ek0_A Protein (GTP-binding pr 99.9 1.3E-23 4.5E-28 172.2 10.3 163 139-316 3-169 (170)
32 1upt_A ARL1, ADP-ribosylation 99.9 1.6E-22 5.5E-27 166.1 16.7 161 137-317 5-170 (171)
33 2hup_A RAS-related protein RAB 99.9 6.7E-23 2.3E-27 173.9 14.3 168 136-318 26-195 (201)
34 2bcg_Y Protein YP2, GTP-bindin 99.9 1.7E-22 5.7E-27 171.8 16.5 165 137-317 6-172 (206)
35 2x77_A ADP-ribosylation factor 99.9 3E-22 1E-26 167.7 17.8 163 137-319 20-187 (189)
36 1z08_A RAS-related protein RAB 99.9 2.8E-23 9.6E-28 170.5 11.0 164 137-316 4-169 (170)
37 2a5j_A RAS-related protein RAB 99.9 3.9E-23 1.3E-27 173.7 12.1 165 136-317 18-185 (191)
38 3t5g_A GTP-binding protein RHE 99.9 6.6E-23 2.3E-27 170.4 13.3 164 138-318 5-171 (181)
39 3ihw_A Centg3; RAS, centaurin, 99.9 6.8E-23 2.3E-27 171.5 13.4 162 135-318 16-182 (184)
40 1kao_A RAP2A; GTP-binding prot 99.9 3.8E-23 1.3E-27 168.7 11.5 162 138-316 2-166 (167)
41 1moz_A ARL1, ADP-ribosylation 99.9 2.9E-22 9.9E-27 166.6 17.0 162 137-317 16-181 (183)
42 2fu5_C RAS-related protein RAB 99.9 2.8E-23 9.5E-28 173.0 10.8 165 137-317 6-172 (183)
43 1g16_A RAS-related protein SEC 99.9 6E-23 2E-27 168.4 12.4 163 138-317 2-166 (170)
44 1r8s_A ADP-ribosylation factor 99.9 2.1E-22 7.3E-27 164.3 15.6 158 140-317 1-163 (164)
45 1u8z_A RAS-related protein RAL 99.9 5.6E-23 1.9E-27 167.9 12.1 162 138-316 3-167 (168)
46 3dz8_A RAS-related protein RAB 99.9 1.7E-23 5.7E-28 175.9 9.1 167 136-317 20-187 (191)
47 2bme_A RAB4A, RAS-related prot 99.9 1.3E-22 4.3E-27 169.3 14.4 165 137-317 8-174 (186)
48 3oes_A GTPase rhebl1; small GT 99.9 5.9E-23 2E-27 174.1 12.5 165 137-318 22-189 (201)
49 3q85_A GTP-binding protein REM 99.9 9E-23 3.1E-27 167.4 13.2 164 139-317 2-168 (169)
50 4djt_A GTP-binding nuclear pro 99.9 6.6E-23 2.3E-27 175.8 12.9 166 137-318 9-177 (218)
51 2wji_A Ferrous iron transport 99.9 4.5E-23 1.5E-27 169.4 11.2 162 139-315 3-164 (165)
52 2ew1_A RAS-related protein RAB 99.9 1.1E-22 3.9E-27 172.7 13.9 165 137-317 24-190 (201)
53 1f6b_A SAR1; gtpases, N-termin 99.9 2.1E-22 7.2E-27 170.5 15.5 159 137-314 23-197 (198)
54 2p5s_A RAS and EF-hand domain 99.9 4.2E-23 1.4E-27 174.7 11.0 166 136-316 25-197 (199)
55 2fn4_A P23, RAS-related protei 99.9 1.4E-22 4.8E-27 167.9 13.6 165 137-318 7-174 (181)
56 3kkq_A RAS-related protein M-R 99.9 1.1E-22 3.7E-27 169.3 12.8 165 135-316 14-182 (183)
57 2hxs_A RAB-26, RAS-related pro 99.9 3.8E-23 1.3E-27 171.1 9.9 166 137-319 4-176 (178)
58 1z2a_A RAS-related protein RAB 99.9 5.6E-23 1.9E-27 168.2 10.7 162 138-316 4-167 (168)
59 2qtf_A Protein HFLX, GTP-bindi 99.9 4.7E-22 1.6E-26 183.5 18.1 173 141-321 181-359 (364)
60 1m2o_B GTP-binding protein SAR 99.9 3.9E-22 1.3E-26 167.7 16.1 157 138-313 22-189 (190)
61 4bas_A ADP-ribosylation factor 99.9 4.4E-22 1.5E-26 167.8 16.4 165 135-318 13-191 (199)
62 3reg_A RHO-like small GTPase; 99.9 9.6E-23 3.3E-27 171.6 12.3 167 136-318 20-190 (194)
63 3bc1_A RAS-related protein RAB 99.9 2.8E-22 9.6E-27 167.9 15.0 166 136-317 8-186 (195)
64 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.2E-22 7.5E-27 166.4 14.0 164 137-317 5-175 (177)
65 4dsu_A GTPase KRAS, isoform 2B 99.9 2E-22 6.8E-27 168.3 13.8 162 138-317 3-167 (189)
66 2erx_A GTP-binding protein DI- 99.9 6.4E-23 2.2E-27 168.4 10.6 164 138-318 2-169 (172)
67 1fzq_A ADP-ribosylation factor 99.9 6.1E-22 2.1E-26 165.2 16.7 161 137-317 14-179 (181)
68 1ega_A Protein (GTP-binding pr 99.9 2.6E-22 9E-27 181.0 15.2 168 138-317 7-176 (301)
69 3cbq_A GTP-binding protein REM 99.9 2.5E-22 8.5E-27 169.7 14.2 169 136-319 20-191 (195)
70 1xzp_A Probable tRNA modificat 99.9 1.2E-22 4.1E-27 193.7 13.6 162 138-315 242-404 (482)
71 2h17_A ADP-ribosylation factor 99.9 4.8E-22 1.6E-26 165.5 15.7 158 136-313 18-180 (181)
72 2o52_A RAS-related protein RAB 99.9 1.2E-22 4.2E-27 172.1 12.0 166 136-317 22-189 (200)
73 1zj6_A ADP-ribosylation factor 99.9 1.1E-21 3.7E-26 164.2 17.5 162 137-318 14-180 (187)
74 3i8s_A Ferrous iron transport 99.9 2.4E-23 8.3E-28 185.3 7.8 168 139-317 3-170 (274)
75 3clv_A RAB5 protein, putative; 99.9 5.9E-22 2E-26 167.1 16.0 162 137-317 5-205 (208)
76 2j1l_A RHO-related GTP-binding 99.9 1.8E-22 6.1E-27 173.0 12.7 167 136-319 31-212 (214)
77 3a1s_A Iron(II) transport prot 99.9 2.2E-22 7.7E-27 177.5 13.4 163 138-315 4-166 (258)
78 2a9k_A RAS-related protein RAL 99.9 2.5E-22 8.6E-27 167.2 13.0 165 137-318 16-183 (187)
79 4gzl_A RAS-related C3 botulinu 99.9 1.3E-22 4.5E-27 172.6 11.3 161 137-314 28-203 (204)
80 2y8e_A RAB-protein 6, GH09086P 99.9 8.7E-23 3E-27 168.8 10.0 163 138-316 13-177 (179)
81 3cph_A RAS-related protein SEC 99.9 3.6E-22 1.2E-26 170.2 14.1 163 137-316 18-182 (213)
82 3cpj_B GTP-binding protein YPT 99.9 1.8E-22 6.2E-27 174.0 12.3 165 137-317 11-177 (223)
83 3t1o_A Gliding protein MGLA; G 99.9 9.3E-23 3.2E-27 171.4 10.2 166 137-317 12-193 (198)
84 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.6E-22 5.4E-27 168.4 11.5 164 138-318 4-182 (186)
85 2bov_A RAla, RAS-related prote 99.9 3.5E-22 1.2E-26 169.3 13.7 165 136-317 11-178 (206)
86 1vg8_A RAS-related protein RAB 99.9 6E-22 2.1E-26 168.1 15.0 164 137-317 6-176 (207)
87 1ky3_A GTP-binding protein YPT 99.9 2.6E-22 8.8E-27 166.4 12.4 166 137-317 6-179 (182)
88 2b6h_A ADP-ribosylation factor 99.9 5.4E-22 1.8E-26 167.1 14.4 161 136-316 26-191 (192)
89 3geh_A MNME, tRNA modification 99.9 9.2E-23 3.2E-27 193.6 10.8 165 137-318 222-386 (462)
90 1x3s_A RAS-related protein RAB 99.9 5.3E-22 1.8E-26 166.6 14.1 166 136-317 12-179 (195)
91 1mky_A Probable GTP-binding pr 99.9 5.5E-22 1.9E-26 188.0 15.9 165 140-316 2-166 (439)
92 2f7s_A C25KG, RAS-related prot 99.9 2.6E-22 9E-27 171.9 12.4 165 136-316 22-199 (217)
93 1zd9_A ADP-ribosylation factor 99.9 8.6E-22 3E-26 165.1 14.9 163 136-317 19-186 (188)
94 3q3j_B RHO-related GTP-binding 99.9 2.3E-22 8E-27 172.4 11.5 165 137-317 25-204 (214)
95 1ksh_A ARF-like protein 2; sma 99.9 1.9E-21 6.6E-26 162.3 16.8 161 137-317 16-181 (186)
96 2q3h_A RAS homolog gene family 99.9 5.2E-22 1.8E-26 167.9 13.5 165 136-317 17-196 (201)
97 2g3y_A GTP-binding protein GEM 99.9 1E-21 3.5E-26 168.1 15.4 167 137-317 35-204 (211)
98 3con_A GTPase NRAS; structural 99.9 5.4E-22 1.9E-26 166.2 13.1 165 137-319 19-186 (190)
99 1z06_A RAS-related protein RAB 99.9 2.4E-22 8.2E-27 168.5 10.9 165 136-316 17-188 (189)
100 2lkc_A Translation initiation 99.9 1.3E-21 4.3E-26 161.9 15.1 163 137-320 6-175 (178)
101 2ce2_X GTPase HRAS; signaling 99.9 6.5E-22 2.2E-26 161.0 13.1 160 139-316 3-165 (166)
102 3iby_A Ferrous iron transport 99.9 2E-22 6.7E-27 177.6 10.6 163 140-313 2-164 (256)
103 1puj_A YLQF, conserved hypothe 99.9 2.1E-23 7E-28 186.2 4.1 159 23-201 3-179 (282)
104 2j0v_A RAC-like GTP-binding pr 99.9 4.3E-22 1.5E-26 170.0 12.1 164 137-317 7-181 (212)
105 2h57_A ADP-ribosylation factor 99.9 2.1E-21 7.1E-26 162.9 16.0 165 136-317 18-188 (190)
106 2atx_A Small GTP binding prote 99.9 1.1E-21 3.8E-26 164.9 14.3 162 137-315 16-192 (194)
107 2atv_A RERG, RAS-like estrogen 99.9 5.3E-22 1.8E-26 167.4 12.3 163 137-317 26-192 (196)
108 2gf0_A GTP-binding protein DI- 99.9 4E-22 1.4E-26 168.0 11.4 164 137-318 6-173 (199)
109 2fv8_A H6, RHO-related GTP-bin 99.9 6.6E-22 2.3E-26 168.4 12.7 165 137-318 23-202 (207)
110 3c5c_A RAS-like protein 12; GD 99.9 2.2E-22 7.7E-27 168.7 9.6 163 136-316 18-186 (187)
111 2gco_A H9, RHO-related GTP-bin 99.9 8.1E-22 2.8E-26 167.1 13.0 162 137-315 23-199 (201)
112 2hjg_A GTP-binding protein ENG 99.9 1.9E-22 6.4E-27 191.1 9.6 162 140-316 4-165 (436)
113 3bwd_D RAC-like GTP-binding pr 99.9 2.1E-22 7.2E-27 167.2 8.7 162 137-315 6-180 (182)
114 3llu_A RAS-related GTP-binding 99.9 1.6E-21 5.6E-26 164.5 14.3 168 135-314 16-195 (196)
115 2wjg_A FEOB, ferrous iron tran 99.9 8.8E-22 3E-26 164.5 12.2 166 138-318 6-171 (188)
116 3b1v_A Ferrous iron uptake tra 99.9 5E-22 1.7E-26 176.4 10.7 162 139-316 3-164 (272)
117 1m7b_A RND3/RHOE small GTP-bin 99.9 5.1E-22 1.8E-26 165.8 10.2 163 137-316 5-183 (184)
118 2yc2_C IFT27, small RAB-relate 99.9 2.5E-22 8.6E-27 170.3 8.4 166 137-317 18-193 (208)
119 3l0i_B RAS-related protein RAB 99.9 3.4E-23 1.2E-27 175.2 2.3 165 137-317 31-197 (199)
120 3k53_A Ferrous iron transport 99.9 1.7E-21 5.8E-26 173.1 12.4 165 139-317 3-167 (271)
121 2cjw_A GTP-binding protein GEM 99.9 3.4E-21 1.2E-25 162.3 13.0 165 138-316 5-172 (192)
122 3gj0_A GTP-binding nuclear pro 99.9 5.2E-22 1.8E-26 170.7 8.1 165 135-317 11-176 (221)
123 1gwn_A RHO-related GTP-binding 99.9 1.2E-21 3.9E-26 167.0 9.9 163 137-316 26-204 (205)
124 3o47_A ADP-ribosylation factor 99.8 2E-20 6.9E-25 170.7 17.3 162 137-317 163-328 (329)
125 2xtp_A GTPase IMAP family memb 99.8 6.9E-21 2.4E-25 168.0 12.9 178 137-318 20-210 (260)
126 3r7w_A Gtpase1, GTP-binding pr 99.8 1.7E-20 5.9E-25 169.6 15.7 169 138-316 2-181 (307)
127 2cxx_A Probable GTP-binding pr 99.8 2.7E-20 9.4E-25 155.4 15.7 163 140-318 2-186 (190)
128 3lxw_A GTPase IMAP family memb 99.8 1.4E-20 4.8E-25 164.9 13.3 182 136-319 18-211 (247)
129 3qq5_A Small GTP-binding prote 99.8 3.2E-21 1.1E-25 180.8 9.7 164 137-316 32-196 (423)
130 1lnz_A SPO0B-associated GTP-bi 99.8 6.6E-21 2.3E-25 174.2 11.3 171 139-318 158-332 (342)
131 4dcu_A GTP-binding protein ENG 99.8 4.1E-21 1.4E-25 182.8 10.2 164 138-316 22-185 (456)
132 3th5_A RAS-related C3 botulinu 99.7 1.6E-22 5.4E-27 171.7 0.0 162 137-314 28-203 (204)
133 2zej_A Dardarin, leucine-rich 99.8 9.5E-21 3.2E-25 158.2 10.8 167 139-319 2-181 (184)
134 2fh5_B SR-beta, signal recogni 99.8 2.2E-20 7.6E-25 159.5 13.3 162 137-314 5-214 (214)
135 2wkq_A NPH1-1, RAS-related C3 99.8 5.9E-20 2E-24 167.1 15.9 164 136-316 152-330 (332)
136 3lvq_E ARF-GAP with SH3 domain 99.8 3.8E-20 1.3E-24 178.1 14.3 163 137-318 320-486 (497)
137 3lxx_A GTPase IMAP family memb 99.8 9.4E-19 3.2E-23 152.4 14.5 177 136-318 26-216 (239)
138 3cnl_A YLQF, putative uncharac 99.8 4.9E-20 1.7E-24 162.6 5.6 140 24-201 2-158 (262)
139 2aka_B Dynamin-1; fusion prote 99.8 5.2E-19 1.8E-23 158.8 12.4 172 137-313 24-250 (299)
140 2f9l_A RAB11B, member RAS onco 99.8 1E-18 3.4E-23 147.7 13.3 163 138-316 4-168 (199)
141 3sjy_A Translation initiation 99.8 1.2E-18 4E-23 163.4 12.5 164 136-316 5-192 (403)
142 3r7w_B Gtpase2, GTP-binding pr 99.8 9.3E-19 3.2E-23 157.7 10.3 162 141-316 1-174 (331)
143 3j2k_7 ERF3, eukaryotic polype 99.8 5.8E-18 2E-22 160.1 16.3 154 137-308 15-217 (439)
144 1pui_A ENGB, probable GTP-bind 99.8 1.9E-17 6.5E-22 140.7 17.4 172 136-316 23-199 (210)
145 1wb1_A Translation elongation 99.8 2.8E-18 9.6E-23 164.1 13.6 161 137-315 17-188 (482)
146 3t5d_A Septin-7; GTP-binding p 99.8 4E-18 1.4E-22 151.6 13.7 169 138-315 7-203 (274)
147 3c5h_A Glucocorticoid receptor 99.8 7.3E-19 2.5E-23 154.7 8.7 89 222-315 162-254 (255)
148 1oix_A RAS-related protein RAB 99.8 6.6E-18 2.3E-22 141.9 13.6 162 137-314 27-190 (191)
149 1kk1_A EIF2gamma; initiation o 99.8 1.2E-17 4.2E-22 156.8 16.5 164 136-316 7-200 (410)
150 3dpu_A RAB family protein; roc 99.8 7.4E-18 2.5E-22 163.5 15.0 163 136-317 38-209 (535)
151 1s0u_A EIF-2-gamma, translatio 99.8 2.1E-17 7.3E-22 155.0 17.4 163 137-316 6-198 (408)
152 3izy_P Translation initiation 99.7 1.6E-19 5.6E-24 173.5 2.2 161 137-316 2-168 (537)
153 3tr5_A RF-3, peptide chain rel 99.7 2.6E-18 8.9E-23 165.6 10.5 117 138-272 12-149 (528)
154 3p26_A Elongation factor 1 alp 99.7 4.6E-18 1.6E-22 162.9 12.1 153 136-305 30-227 (483)
155 2c78_A Elongation factor TU-A; 99.7 5E-18 1.7E-22 159.2 11.5 161 137-315 9-211 (405)
156 2j69_A Bacterial dynamin-like 99.7 6.2E-17 2.1E-21 161.1 19.6 167 136-316 66-325 (695)
157 1d2e_A Elongation factor TU (E 99.7 1.4E-17 4.6E-22 155.8 13.3 161 138-316 2-195 (397)
158 1jwy_B Dynamin A GTPase domain 99.7 9.5E-18 3.2E-22 151.8 11.9 176 137-317 22-263 (315)
159 2elf_A Protein translation elo 99.7 2.8E-17 9.4E-22 152.0 15.1 146 141-315 23-179 (370)
160 1zun_B Sulfate adenylate trans 99.7 2.9E-17 9.7E-22 155.4 14.5 153 137-306 22-214 (434)
161 3izq_1 HBS1P, elongation facto 99.7 1.3E-17 4.4E-22 163.5 10.8 154 136-306 164-362 (611)
162 2ywe_A GTP-binding protein LEP 99.7 5.1E-17 1.8E-21 158.1 14.4 159 138-316 5-184 (600)
163 2x2e_A Dynamin-1; nitration, h 99.7 1.2E-17 4E-22 153.9 9.4 171 137-312 29-254 (353)
164 3cb4_D GTP-binding protein LEP 99.7 5.7E-17 1.9E-21 158.0 14.5 159 138-316 3-182 (599)
165 2www_A Methylmalonic aciduria 99.7 3.4E-17 1.2E-21 150.4 10.6 154 137-315 72-278 (349)
166 1jny_A EF-1-alpha, elongation 99.7 5.7E-17 1.9E-21 153.3 12.2 152 138-306 5-203 (435)
167 3mca_A HBS1, elongation factor 99.7 3.8E-18 1.3E-22 166.7 4.1 162 137-315 175-396 (592)
168 1zo1_I IF2, translation initia 99.7 3.8E-18 1.3E-22 162.7 3.9 158 137-313 2-164 (501)
169 1g7s_A Translation initiation 99.7 1.6E-16 5.3E-21 155.0 14.9 160 137-315 3-217 (594)
170 1nrj_B SR-beta, signal recogni 99.7 2.4E-17 8.3E-22 140.9 7.8 121 136-273 9-136 (218)
171 4a9a_A Ribosome-interacting GT 99.7 4.1E-16 1.4E-20 143.5 15.9 125 137-269 70-194 (376)
172 3def_A T7I23.11 protein; chlor 99.7 6.7E-16 2.3E-20 136.2 16.4 133 136-272 33-166 (262)
173 1wxq_A GTP-binding protein; st 99.7 4.2E-17 1.4E-21 152.0 9.1 90 140-235 1-114 (397)
174 1h65_A Chloroplast outer envel 99.7 9.2E-16 3.1E-20 136.0 16.8 132 137-272 37-169 (270)
175 3avx_A Elongation factor TS, e 99.7 2.4E-16 8.1E-21 160.8 14.6 162 136-315 293-485 (1289)
176 1udx_A The GTP-binding protein 99.7 5.5E-16 1.9E-20 144.9 16.0 164 139-317 157-326 (416)
177 3p32_A Probable GTPase RV1496/ 99.7 7.4E-16 2.5E-20 141.9 15.6 158 134-316 74-284 (355)
178 1f60_A Elongation factor EEF1A 99.7 2.5E-17 8.6E-22 156.6 5.5 151 138-306 6-202 (458)
179 2qag_A Septin-2, protein NEDD5 99.7 7.2E-16 2.5E-20 142.2 14.3 172 137-316 35-233 (361)
180 3t34_A Dynamin-related protein 99.7 4E-16 1.4E-20 144.0 11.7 168 138-311 33-256 (360)
181 2wsm_A Hydrogenase expression/ 99.6 4.5E-16 1.5E-20 133.4 9.6 155 138-317 29-215 (221)
182 1r5b_A Eukaryotic peptide chai 99.6 3.9E-16 1.3E-20 148.7 8.9 153 137-307 41-243 (467)
183 2h5e_A Peptide chain release f 99.6 2E-15 6.9E-20 145.6 13.3 118 137-272 11-149 (529)
184 3ec1_A YQEH GTPase; atnos1, at 99.6 9.4E-17 3.2E-21 148.5 3.8 218 45-304 71-319 (369)
185 3zvr_A Dynamin-1; hydrolase, D 99.6 1.4E-15 4.9E-20 150.7 12.1 168 137-312 49-274 (772)
186 1dar_A EF-G, elongation factor 99.6 6E-15 2E-19 146.7 16.1 118 137-272 10-144 (691)
187 2p67_A LAO/AO transport system 99.6 3.7E-15 1.3E-19 136.5 12.1 155 135-315 52-260 (341)
188 3h2y_A GTPase family protein; 99.6 7.8E-17 2.7E-21 148.9 0.6 216 45-302 69-316 (368)
189 2xex_A Elongation factor G; GT 99.6 4.9E-15 1.7E-19 147.4 13.5 118 137-272 8-142 (693)
190 2dy1_A Elongation factor G; tr 99.6 7.5E-15 2.6E-19 145.5 14.5 116 137-270 7-139 (665)
191 2ged_A SR-beta, signal recogni 99.6 8.2E-15 2.8E-19 122.5 10.2 120 137-273 46-172 (193)
192 2rdo_7 EF-G, elongation factor 99.6 4.7E-14 1.6E-18 140.5 16.9 118 137-272 8-149 (704)
193 1jal_A YCHF protein; nucleotid 99.6 3.3E-14 1.1E-18 130.2 13.7 90 139-234 2-108 (363)
194 2qm8_A GTPase/ATPase; G protei 99.5 5.2E-14 1.8E-18 128.5 13.6 157 134-315 50-260 (337)
195 1yrb_A ATP(GTP)binding protein 99.5 1.4E-14 4.9E-19 127.2 9.2 170 137-316 12-257 (262)
196 2hf9_A Probable hydrogenase ni 99.5 3.9E-14 1.3E-18 121.6 10.7 156 137-317 36-225 (226)
197 3vqt_A RF-3, peptide chain rel 99.5 7.7E-14 2.6E-18 135.1 12.9 117 138-272 30-167 (548)
198 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-13 3.8E-18 124.4 11.5 170 138-316 17-214 (301)
199 2qag_C Septin-7; cell cycle, c 99.5 2.1E-13 7E-18 127.6 11.1 169 138-314 30-225 (418)
200 2dby_A GTP-binding protein; GD 99.5 2.5E-13 8.7E-18 124.9 11.5 89 140-234 2-111 (368)
201 2qpt_A EH domain-containing pr 99.4 3.1E-13 1.1E-17 130.9 10.6 131 137-273 63-234 (550)
202 1cip_A Protein (guanine nucleo 99.4 4.6E-13 1.6E-17 122.7 10.9 127 182-320 188-348 (353)
203 1zcb_A G alpha I/13; GTP-bindi 99.4 1.5E-12 5.1E-17 119.7 11.2 126 182-319 196-356 (362)
204 3j25_A Tetracycline resistance 99.4 2.4E-13 8.2E-18 134.1 5.5 158 140-316 3-239 (638)
205 1t9h_A YLOQ, probable GTPase E 99.4 2.6E-13 9E-18 121.7 4.5 122 43-201 84-238 (307)
206 3ohm_A Guanine nucleotide-bind 99.3 3.1E-12 1.1E-16 115.6 9.8 126 182-320 162-322 (327)
207 1n0u_A EF-2, elongation factor 99.3 1.1E-12 3.9E-17 132.9 7.8 116 137-270 17-163 (842)
208 2rcn_A Probable GTPase ENGC; Y 99.3 2.7E-12 9.2E-17 117.3 7.1 121 44-201 129-282 (358)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.9E-11 6.6E-16 113.1 11.5 95 135-234 16-127 (392)
210 4fn5_A EF-G 1, elongation fact 99.3 4.3E-11 1.5E-15 119.5 14.7 117 138-272 12-152 (709)
211 4fid_A G protein alpha subunit 99.2 4.3E-11 1.5E-15 108.6 7.6 123 181-316 155-328 (340)
212 2j37_W Signal recognition part 99.1 1.5E-10 5E-15 110.5 11.1 162 137-313 99-310 (504)
213 2yv5_A YJEQ protein; hydrolase 99.1 1.4E-10 4.7E-15 104.2 9.4 121 43-200 77-229 (302)
214 2ohf_A Protein OLA1, GTP-bindi 99.1 4.1E-11 1.4E-15 110.7 5.3 94 135-234 18-128 (396)
215 2qag_B Septin-6, protein NEDD5 99.0 1.3E-09 4.5E-14 101.6 10.8 149 140-297 43-217 (427)
216 1u0l_A Probable GTPase ENGC; p 99.0 3.5E-09 1.2E-13 95.0 11.9 105 187-312 63-169 (301)
217 2xtz_A Guanine nucleotide-bind 99.0 4.9E-10 1.7E-14 102.6 6.0 122 186-319 182-348 (354)
218 1tq4_A IIGP1, interferon-induc 99.0 1.4E-08 4.9E-13 94.5 15.9 164 137-317 67-254 (413)
219 1azs_C GS-alpha; complex (lyas 98.9 1.2E-09 4.3E-14 101.2 6.6 124 182-318 212-387 (402)
220 3sop_A Neuronal-specific septi 98.9 1E-08 3.5E-13 90.4 11.8 128 139-273 2-156 (270)
221 1u0l_A Probable GTPase ENGC; p 98.9 2.3E-09 7.8E-14 96.2 7.6 122 42-200 81-234 (301)
222 1f5n_A Interferon-induced guan 98.9 2.6E-09 8.9E-14 103.6 8.5 63 137-201 36-105 (592)
223 2v3c_C SRP54, signal recogniti 98.9 5.5E-10 1.9E-14 104.9 2.1 161 139-314 99-309 (432)
224 3dm5_A SRP54, signal recogniti 98.7 1.1E-07 3.7E-12 89.0 13.2 148 138-306 99-281 (443)
225 1puj_A YLQF, conserved hypothe 98.7 5.8E-08 2E-12 86.1 10.7 94 211-315 12-105 (282)
226 2yv5_A YJEQ protein; hydrolase 98.7 4.2E-08 1.4E-12 87.9 8.1 88 219-312 76-165 (302)
227 3ec1_A YQEH GTPase; atnos1, at 98.5 1.3E-07 4.5E-12 87.1 8.0 96 212-315 60-161 (369)
228 3kl4_A SRP54, signal recogniti 98.5 3.8E-07 1.3E-11 85.3 10.8 148 138-304 96-278 (433)
229 3h2y_A GTPase family protein; 98.5 2.1E-07 7.2E-12 85.6 8.5 96 212-315 58-159 (368)
230 3l82_B F-box only protein 4; T 98.5 4.1E-07 1.4E-11 76.2 9.4 104 213-317 115-224 (227)
231 3szr_A Interferon-induced GTP- 98.4 3.8E-06 1.3E-10 82.3 13.3 82 186-272 146-229 (608)
232 1j8m_F SRP54, signal recogniti 98.3 2.4E-06 8.2E-11 76.2 9.2 149 139-307 98-282 (297)
233 3cnl_A YLQF, putative uncharac 98.2 4.5E-07 1.6E-11 79.5 2.9 88 212-313 11-98 (262)
234 3l2o_B F-box only protein 4; s 98.2 2.2E-06 7.4E-11 75.2 7.2 98 219-317 207-309 (312)
235 1rj9_A FTSY, signal recognitio 98.2 8.5E-06 2.9E-10 72.9 9.9 152 138-306 101-289 (304)
236 3e70_C DPA, signal recognition 98.1 4.5E-06 1.6E-10 75.4 7.2 149 137-306 127-310 (328)
237 2yhs_A FTSY, cell division pro 98.1 3.6E-05 1.2E-09 72.8 12.9 150 137-306 291-480 (503)
238 2xxa_A Signal recognition part 98.0 3.6E-05 1.2E-09 72.1 11.0 121 138-273 99-256 (433)
239 3q5d_A Atlastin-1; G protein, 98.0 9E-06 3.1E-10 76.3 6.8 63 137-200 65-153 (447)
240 1zu4_A FTSY; GTPase, signal re 97.8 0.00026 8.8E-09 63.6 13.4 150 137-306 103-296 (320)
241 1vma_A Cell division protein F 97.8 0.00017 5.8E-09 64.4 11.8 149 138-306 103-291 (306)
242 1t9h_A YLOQ, probable GTPase E 97.8 1.3E-05 4.4E-10 71.7 4.0 86 219-310 83-171 (307)
243 2px0_A Flagellar biosynthesis 97.8 3.1E-05 1E-09 69.0 6.2 145 138-303 104-278 (296)
244 2og2_A Putative signal recogni 97.8 0.00033 1.1E-08 63.8 13.2 24 138-161 156-179 (359)
245 3b9q_A Chloroplast SRP recepto 97.7 0.0004 1.4E-08 61.9 12.3 25 137-161 98-122 (302)
246 2ffh_A Protein (FFH); SRP54, s 97.5 0.0009 3.1E-08 62.3 12.0 101 185-306 179-279 (425)
247 2rcn_A Probable GTPase ENGC; Y 97.3 0.00086 3E-08 61.0 9.8 85 219-310 127-213 (358)
248 3ney_A 55 kDa erythrocyte memb 97.2 4.1E-05 1.4E-09 63.9 -0.6 58 138-197 18-76 (197)
249 1ls1_A Signal recognition part 97.2 0.00062 2.1E-08 60.4 6.9 101 185-306 179-279 (295)
250 4dzz_A Plasmid partitioning pr 97.2 0.00045 1.5E-08 57.3 5.5 69 186-270 75-143 (206)
251 1nij_A Hypothetical protein YJ 97.1 0.0057 1.9E-07 54.7 11.9 24 139-162 4-27 (318)
252 1ye8_A Protein THEP1, hypothet 96.7 0.0008 2.7E-08 55.0 2.9 22 141-162 2-23 (178)
253 1kgd_A CASK, peripheral plasma 96.7 0.00091 3.1E-08 54.6 3.0 24 139-162 5-28 (180)
254 1lvg_A Guanylate kinase, GMP k 96.6 0.00072 2.5E-08 56.2 2.3 23 140-162 5-27 (198)
255 1zp6_A Hypothetical protein AT 96.5 0.0015 5.1E-08 53.5 3.5 25 138-162 8-32 (191)
256 3c8u_A Fructokinase; YP_612366 96.5 0.0014 4.9E-08 54.7 3.2 27 136-162 19-45 (208)
257 3tr0_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 54.2 3.1 25 138-162 6-30 (205)
258 4ido_A Atlastin-1; GTPase, GTP 96.4 0.011 3.7E-07 55.2 9.0 23 138-160 66-88 (457)
259 3a00_A Guanylate kinase, GMP k 96.4 0.0014 4.9E-08 53.6 2.6 21 142-162 4-24 (186)
260 3tau_A Guanylate kinase, GMP k 96.4 0.0017 5.9E-08 54.2 3.1 25 138-162 7-31 (208)
261 1s96_A Guanylate kinase, GMP k 96.4 0.0017 5.9E-08 54.9 3.0 28 136-163 13-40 (219)
262 1znw_A Guanylate kinase, GMP k 96.3 0.002 6.7E-08 53.8 3.1 26 137-162 18-43 (207)
263 1z6g_A Guanylate kinase; struc 96.3 0.0016 5.4E-08 55.0 2.5 25 138-162 22-46 (218)
264 3t15_A Ribulose bisphosphate c 96.3 0.0068 2.3E-07 53.5 6.6 25 137-161 34-58 (293)
265 1ex7_A Guanylate kinase; subst 96.2 0.0016 5.6E-08 53.6 2.2 21 142-162 4-24 (186)
266 2j41_A Guanylate kinase; GMP, 96.2 0.0024 8.3E-08 52.8 3.2 25 138-162 5-29 (207)
267 3asz_A Uridine kinase; cytidin 96.2 0.0023 8E-08 53.3 3.0 25 138-162 5-29 (211)
268 3end_A Light-independent proto 96.2 0.011 3.7E-07 52.3 7.5 68 186-269 156-225 (307)
269 4gp7_A Metallophosphoesterase; 96.1 0.0032 1.1E-07 50.9 3.3 24 138-161 8-31 (171)
270 2pcj_A ABC transporter, lipopr 96.1 0.0029 9.9E-08 53.7 3.1 26 138-163 29-54 (224)
271 3tif_A Uncharacterized ABC tra 96.1 0.0034 1.2E-07 53.6 3.5 27 137-163 29-55 (235)
272 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.07 2.4E-06 45.5 12.0 25 137-161 37-61 (262)
273 2qor_A Guanylate kinase; phosp 96.0 0.0029 9.9E-08 52.6 2.8 25 137-161 10-34 (204)
274 4eun_A Thermoresistant glucoki 96.0 0.0033 1.1E-07 52.0 3.0 24 138-161 28-51 (200)
275 2onk_A Molybdate/tungstate ABC 96.0 0.0037 1.3E-07 53.6 3.3 24 140-163 25-48 (240)
276 1htw_A HI0065; nucleotide-bind 96.0 0.0044 1.5E-07 49.6 3.3 27 137-163 31-57 (158)
277 3gfo_A Cobalt import ATP-bindi 95.9 0.0039 1.3E-07 54.6 3.3 27 137-163 32-58 (275)
278 1kag_A SKI, shikimate kinase I 95.9 0.003 1E-07 50.7 2.3 22 140-161 5-26 (173)
279 1d2n_A N-ethylmaleimide-sensit 95.9 0.24 8.3E-06 42.6 14.9 26 136-161 61-86 (272)
280 4g1u_C Hemin import ATP-bindin 95.9 0.004 1.4E-07 54.3 3.3 27 137-163 35-61 (266)
281 3aez_A Pantothenate kinase; tr 95.9 0.0039 1.3E-07 55.7 3.3 27 136-162 87-113 (312)
282 3te6_A Regulatory protein SIR3 95.9 0.12 4.2E-06 46.0 13.0 25 137-161 43-67 (318)
283 1sgw_A Putative ABC transporte 95.9 0.0038 1.3E-07 52.6 3.0 25 139-163 35-59 (214)
284 2ff7_A Alpha-hemolysin translo 95.9 0.0041 1.4E-07 53.6 3.3 26 138-163 34-59 (247)
285 2bbw_A Adenylate kinase 4, AK4 95.9 0.0045 1.5E-07 53.0 3.5 23 138-160 26-48 (246)
286 2cbz_A Multidrug resistance-as 95.9 0.0057 2E-07 52.3 4.1 27 137-163 29-55 (237)
287 1b0u_A Histidine permease; ABC 95.9 0.0046 1.6E-07 53.7 3.5 27 137-163 30-56 (262)
288 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.061 2.1E-06 48.0 11.0 23 139-161 45-67 (322)
289 2bdt_A BH3686; alpha-beta prot 95.9 0.0043 1.5E-07 50.7 3.1 21 141-161 4-24 (189)
290 1mv5_A LMRA, multidrug resista 95.9 0.006 2E-07 52.4 4.1 26 137-162 26-51 (243)
291 1g6h_A High-affinity branched- 95.9 0.0045 1.5E-07 53.6 3.3 27 137-163 31-57 (257)
292 3lw7_A Adenylate kinase relate 95.8 0.0047 1.6E-07 49.3 3.1 20 140-159 2-21 (179)
293 1ly1_A Polynucleotide kinase; 95.8 0.0052 1.8E-07 49.4 3.4 22 140-161 3-24 (181)
294 3b85_A Phosphate starvation-in 95.8 0.0038 1.3E-07 52.3 2.6 24 139-162 22-45 (208)
295 2qi9_C Vitamin B12 import ATP- 95.8 0.0048 1.6E-07 53.2 3.3 26 138-163 25-50 (249)
296 1knq_A Gluconate kinase; ALFA/ 95.8 0.0051 1.7E-07 49.5 3.3 23 139-161 8-30 (175)
297 3uie_A Adenylyl-sulfate kinase 95.8 0.0068 2.3E-07 50.1 4.1 26 137-162 23-48 (200)
298 2olj_A Amino acid ABC transpor 95.8 0.0053 1.8E-07 53.4 3.5 27 137-163 48-74 (263)
299 2pze_A Cystic fibrosis transme 95.8 0.005 1.7E-07 52.4 3.3 26 138-163 33-58 (229)
300 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0051 1.7E-07 53.0 3.4 25 138-162 28-52 (250)
301 3lnc_A Guanylate kinase, GMP k 95.8 0.0033 1.1E-07 53.3 2.1 26 137-162 25-51 (231)
302 2ghi_A Transport protein; mult 95.8 0.0055 1.9E-07 53.2 3.5 26 137-162 44-69 (260)
303 1vpl_A ABC transporter, ATP-bi 95.8 0.0055 1.9E-07 53.1 3.5 27 137-163 39-65 (256)
304 2v9p_A Replication protein E1; 95.8 0.0046 1.6E-07 54.9 3.0 27 135-161 122-148 (305)
305 2qt1_A Nicotinamide riboside k 95.8 0.0058 2E-07 50.7 3.5 28 135-162 17-44 (207)
306 3kb2_A SPBC2 prophage-derived 95.8 0.0054 1.8E-07 49.0 3.2 21 141-161 3-23 (173)
307 2jeo_A Uridine-cytidine kinase 95.8 0.0052 1.8E-07 52.6 3.3 26 136-161 22-47 (245)
308 1ji0_A ABC transporter; ATP bi 95.8 0.0053 1.8E-07 52.6 3.3 26 138-163 31-56 (240)
309 1odf_A YGR205W, hypothetical 3 95.8 0.012 4.1E-07 51.9 5.7 27 135-161 27-53 (290)
310 2ihy_A ABC transporter, ATP-bi 95.8 0.0052 1.8E-07 53.9 3.3 27 137-163 45-71 (279)
311 4b4t_L 26S protease subunit RP 95.8 0.2 6.7E-06 46.7 14.1 26 136-161 212-237 (437)
312 2eyu_A Twitching motility prot 95.7 0.0055 1.9E-07 53.2 3.3 25 137-161 23-47 (261)
313 2ixe_A Antigen peptide transpo 95.7 0.0059 2E-07 53.3 3.5 27 137-163 43-69 (271)
314 2zu0_C Probable ATP-dependent 95.7 0.0062 2.1E-07 53.1 3.6 26 137-162 44-69 (267)
315 2i3b_A HCR-ntpase, human cance 95.7 0.0041 1.4E-07 51.3 2.3 22 141-162 3-24 (189)
316 1bif_A 6-phosphofructo-2-kinas 95.7 0.00076 2.6E-08 63.8 -2.5 26 137-162 37-62 (469)
317 3cm0_A Adenylate kinase; ATP-b 95.7 0.0065 2.2E-07 49.3 3.5 24 138-161 3-26 (186)
318 2rhm_A Putative kinase; P-loop 95.7 0.0065 2.2E-07 49.5 3.5 24 138-161 4-27 (193)
319 2nq2_C Hypothetical ABC transp 95.7 0.0056 1.9E-07 52.9 3.2 26 138-163 30-55 (253)
320 1cke_A CK, MSSA, protein (cyti 95.7 0.0054 1.9E-07 51.5 2.9 23 139-161 5-27 (227)
321 1jjv_A Dephospho-COA kinase; P 95.7 0.0069 2.3E-07 50.2 3.5 22 140-161 3-24 (206)
322 4b4t_K 26S protease regulatory 95.6 0.15 5.2E-06 47.3 12.8 25 137-161 204-228 (428)
323 2yz2_A Putative ABC transporte 95.6 0.0068 2.3E-07 52.8 3.5 27 137-163 31-57 (266)
324 3tlx_A Adenylate kinase 2; str 95.6 0.011 3.7E-07 50.6 4.7 26 136-161 26-51 (243)
325 1np6_A Molybdopterin-guanine d 95.6 0.0064 2.2E-07 49.4 3.0 24 139-162 6-29 (174)
326 3tqc_A Pantothenate kinase; bi 95.6 0.0066 2.3E-07 54.4 3.3 26 136-161 89-114 (321)
327 1qhx_A CPT, protein (chloramph 95.6 0.007 2.4E-07 48.7 3.2 22 140-161 4-25 (178)
328 1kht_A Adenylate kinase; phosp 95.6 0.0072 2.5E-07 49.1 3.3 23 139-161 3-25 (192)
329 3cwq_A Para family chromosome 95.6 0.021 7E-07 47.6 6.2 68 185-271 66-134 (209)
330 2if2_A Dephospho-COA kinase; a 95.5 0.006 2E-07 50.4 2.7 21 141-161 3-23 (204)
331 2pjz_A Hypothetical protein ST 95.5 0.0072 2.5E-07 52.5 3.3 25 139-163 30-54 (263)
332 3t61_A Gluconokinase; PSI-biol 95.5 0.0059 2E-07 50.5 2.6 23 139-161 18-40 (202)
333 3ec2_A DNA replication protein 95.5 0.0059 2E-07 49.5 2.5 24 139-162 38-61 (180)
334 3nh6_A ATP-binding cassette SU 95.5 0.0057 1.9E-07 54.4 2.5 26 137-162 78-103 (306)
335 1gvn_B Zeta; postsegregational 95.5 0.016 5.5E-07 50.9 5.5 25 137-161 31-55 (287)
336 1y63_A LMAJ004144AAA protein; 95.5 0.0085 2.9E-07 48.8 3.4 25 138-162 9-33 (184)
337 2f1r_A Molybdopterin-guanine d 95.5 0.0036 1.2E-07 50.8 1.0 22 141-162 4-25 (171)
338 2p5t_B PEZT; postsegregational 95.5 0.013 4.5E-07 50.4 4.6 27 135-161 28-54 (253)
339 3vaa_A Shikimate kinase, SK; s 95.4 0.0088 3E-07 49.4 3.4 24 138-161 24-47 (199)
340 1sq5_A Pantothenate kinase; P- 95.4 0.0074 2.5E-07 53.7 3.1 25 137-161 78-102 (308)
341 1rz3_A Hypothetical protein rb 95.4 0.0081 2.8E-07 49.7 3.1 25 137-161 20-44 (201)
342 1aky_A Adenylate kinase; ATP:A 95.4 0.0089 3E-07 50.1 3.4 24 138-161 3-26 (220)
343 2plr_A DTMP kinase, probable t 95.4 0.0097 3.3E-07 49.2 3.5 23 139-161 4-26 (213)
344 2v54_A DTMP kinase, thymidylat 95.4 0.0099 3.4E-07 48.9 3.5 25 138-162 3-27 (204)
345 1nks_A Adenylate kinase; therm 95.4 0.009 3.1E-07 48.5 3.2 21 141-161 3-23 (194)
346 3fb4_A Adenylate kinase; psych 95.4 0.0088 3E-07 49.9 3.2 21 141-161 2-22 (216)
347 2cdn_A Adenylate kinase; phosp 95.3 0.011 3.6E-07 48.8 3.6 26 136-161 17-42 (201)
348 2jaq_A Deoxyguanosine kinase; 95.3 0.0096 3.3E-07 48.9 3.2 21 141-161 2-22 (205)
349 4e22_A Cytidylate kinase; P-lo 95.3 0.011 3.8E-07 50.8 3.8 24 137-160 25-48 (252)
350 1tev_A UMP-CMP kinase; ploop, 95.3 0.01 3.6E-07 48.2 3.4 23 139-161 3-25 (196)
351 3eie_A Vacuolar protein sortin 95.3 0.064 2.2E-06 47.7 8.9 24 138-161 50-73 (322)
352 4b4t_I 26S protease regulatory 95.3 0.26 8.9E-06 45.7 13.0 25 137-161 214-238 (437)
353 3dl0_A Adenylate kinase; phosp 95.3 0.0097 3.3E-07 49.7 3.2 21 141-161 2-22 (216)
354 2bbs_A Cystic fibrosis transme 95.3 0.012 4E-07 52.0 3.8 27 137-163 62-88 (290)
355 1nn5_A Similar to deoxythymidy 95.3 0.01 3.6E-07 49.2 3.3 24 138-161 8-31 (215)
356 2wwf_A Thymidilate kinase, put 95.3 0.01 3.5E-07 49.1 3.3 25 137-161 8-32 (212)
357 4a74_A DNA repair and recombin 95.3 0.009 3.1E-07 50.1 2.9 27 135-161 21-47 (231)
358 3tui_C Methionine import ATP-b 95.3 0.011 3.7E-07 53.9 3.6 27 137-163 52-78 (366)
359 2c95_A Adenylate kinase 1; tra 95.2 0.011 3.7E-07 48.3 3.3 24 138-161 8-31 (196)
360 2ehv_A Hypothetical protein PH 95.2 0.011 3.7E-07 50.3 3.2 26 135-160 26-51 (251)
361 2kjq_A DNAA-related protein; s 95.2 0.0087 3E-07 47.2 2.4 25 138-162 35-59 (149)
362 3fvq_A Fe(3+) IONS import ATP- 95.2 0.01 3.5E-07 53.9 3.2 26 138-163 29-54 (359)
363 3h4m_A Proteasome-activating n 95.2 0.14 4.9E-06 44.2 10.5 25 137-161 49-73 (285)
364 3b9p_A CG5977-PA, isoform A; A 95.2 0.068 2.3E-06 46.7 8.5 24 138-161 53-76 (297)
365 1zd8_A GTP:AMP phosphotransfer 95.2 0.011 3.7E-07 49.9 3.1 23 138-160 6-28 (227)
366 2yvu_A Probable adenylyl-sulfa 95.2 0.014 4.7E-07 47.5 3.6 25 137-161 11-35 (186)
367 1lw7_A Transcriptional regulat 95.1 0.0083 2.8E-07 54.7 2.5 24 139-162 170-193 (365)
368 2vp4_A Deoxynucleoside kinase; 95.1 0.011 3.7E-07 50.1 3.0 26 137-162 18-43 (230)
369 1z47_A CYSA, putative ABC-tran 95.1 0.012 3.9E-07 53.5 3.4 26 138-163 40-65 (355)
370 1zak_A Adenylate kinase; ATP:A 95.1 0.01 3.5E-07 49.8 2.8 24 138-161 4-27 (222)
371 2pez_A Bifunctional 3'-phospho 95.1 0.013 4.3E-07 47.4 3.2 24 138-161 4-27 (179)
372 3trf_A Shikimate kinase, SK; a 95.1 0.013 4.5E-07 47.4 3.3 23 139-161 5-27 (185)
373 3jvv_A Twitching mobility prot 95.1 0.01 3.6E-07 53.9 2.9 21 141-161 125-145 (356)
374 2gza_A Type IV secretion syste 95.0 0.0091 3.1E-07 54.4 2.4 25 138-162 174-198 (361)
375 1ukz_A Uridylate kinase; trans 95.0 0.016 5.3E-07 47.8 3.6 24 138-161 14-37 (203)
376 1xjc_A MOBB protein homolog; s 95.0 0.015 5E-07 47.0 3.3 23 139-161 4-26 (169)
377 3iij_A Coilin-interacting nucl 95.0 0.012 4.1E-07 47.5 2.9 24 138-161 10-33 (180)
378 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.011 3.6E-07 53.3 2.7 24 139-162 171-194 (330)
379 3kjh_A CO dehydrogenase/acetyl 95.0 0.014 4.9E-07 49.5 3.4 65 185-268 130-194 (254)
380 4b4t_J 26S protease regulatory 95.0 0.34 1.2E-05 44.5 12.8 25 137-161 180-204 (405)
381 2yyz_A Sugar ABC transporter, 95.0 0.015 5E-07 52.9 3.6 26 138-163 28-53 (359)
382 1vht_A Dephospho-COA kinase; s 95.0 0.015 5.3E-07 48.5 3.5 24 138-161 3-26 (218)
383 1g29_1 MALK, maltose transport 95.0 0.013 4.6E-07 53.5 3.4 26 138-163 28-53 (372)
384 1uf9_A TT1252 protein; P-loop, 95.0 0.015 5.2E-07 47.7 3.4 26 137-162 6-31 (203)
385 2ewv_A Twitching motility prot 94.9 0.013 4.6E-07 53.5 3.3 24 138-161 135-158 (372)
386 2it1_A 362AA long hypothetical 94.9 0.015 5.2E-07 52.9 3.6 27 137-163 27-53 (362)
387 4b4t_M 26S protease regulatory 94.9 0.071 2.4E-06 49.6 8.1 26 136-161 212-237 (434)
388 3rlf_A Maltose/maltodextrin im 94.9 0.016 5.4E-07 53.1 3.6 27 137-163 27-53 (381)
389 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.016 5.5E-07 50.0 3.5 23 139-161 4-26 (260)
390 2vli_A Antibiotic resistance p 94.9 0.011 3.9E-07 47.6 2.4 23 139-161 5-27 (183)
391 1e4v_A Adenylate kinase; trans 94.9 0.015 5E-07 48.6 3.1 21 141-161 2-22 (214)
392 2bwj_A Adenylate kinase 5; pho 94.8 0.015 5.2E-07 47.5 3.1 23 139-161 12-34 (199)
393 2pt5_A Shikimate kinase, SK; a 94.8 0.016 5.5E-07 46.0 3.1 21 141-161 2-22 (168)
394 1v43_A Sugar-binding transport 94.8 0.017 5.8E-07 52.8 3.6 27 137-163 35-61 (372)
395 2x8a_A Nuclear valosin-contain 94.8 0.013 4.4E-07 51.2 2.7 20 142-161 47-66 (274)
396 4b4t_H 26S protease regulatory 94.8 0.38 1.3E-05 45.0 12.6 25 137-161 241-265 (467)
397 3be4_A Adenylate kinase; malar 94.8 0.016 5.5E-07 48.5 3.1 24 138-161 4-27 (217)
398 2ph1_A Nucleotide-binding prot 94.7 0.53 1.8E-05 40.2 12.9 67 185-269 127-194 (262)
399 2z0h_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 46.9 3.3 21 141-161 2-22 (197)
400 2oap_1 GSPE-2, type II secreti 94.7 0.017 5.8E-07 55.1 3.3 24 139-162 260-283 (511)
401 2pbr_A DTMP kinase, thymidylat 94.7 0.018 6.3E-07 46.7 3.2 21 141-161 2-22 (195)
402 1ixz_A ATP-dependent metallopr 94.6 0.015 5.1E-07 49.8 2.6 20 142-161 52-71 (254)
403 3d31_A Sulfate/molybdate ABC t 94.6 0.014 4.9E-07 52.8 2.6 26 138-163 25-50 (348)
404 1qf9_A UMP/CMP kinase, protein 94.6 0.02 6.8E-07 46.4 3.3 23 139-161 6-28 (194)
405 1via_A Shikimate kinase; struc 94.6 0.016 5.6E-07 46.5 2.6 21 141-161 6-26 (175)
406 1gtv_A TMK, thymidylate kinase 94.6 0.0084 2.9E-07 49.8 0.8 21 141-161 2-22 (214)
407 2xb4_A Adenylate kinase; ATP-b 94.5 0.02 7E-07 48.1 3.2 21 141-161 2-22 (223)
408 1m7g_A Adenylylsulfate kinase; 94.5 0.022 7.5E-07 47.4 3.3 25 137-161 23-47 (211)
409 1uj2_A Uridine-cytidine kinase 94.5 0.022 7.7E-07 48.8 3.5 25 137-161 20-44 (252)
410 3sr0_A Adenylate kinase; phosp 94.5 0.022 7.5E-07 47.5 3.3 21 141-161 2-22 (206)
411 3gd7_A Fusion complex of cysti 94.5 0.021 7.2E-07 52.5 3.4 26 137-162 45-70 (390)
412 1ak2_A Adenylate kinase isoenz 94.5 0.024 8.1E-07 48.0 3.5 24 138-161 15-38 (233)
413 1jbk_A CLPB protein; beta barr 94.5 0.025 8.5E-07 45.4 3.5 24 139-162 43-66 (195)
414 4eaq_A DTMP kinase, thymidylat 94.5 0.025 8.7E-07 47.9 3.6 25 137-161 24-48 (229)
415 2f6r_A COA synthase, bifunctio 94.4 0.022 7.6E-07 49.9 3.3 24 137-160 73-96 (281)
416 2qp9_X Vacuolar protein sortin 94.4 0.08 2.7E-06 47.9 7.1 23 139-161 84-106 (355)
417 1oxx_K GLCV, glucose, ABC tran 94.4 0.014 4.6E-07 53.1 1.9 27 137-163 29-55 (353)
418 2iyv_A Shikimate kinase, SK; t 94.4 0.018 6.1E-07 46.6 2.5 21 141-161 4-24 (184)
419 1p9r_A General secretion pathw 94.4 0.022 7.6E-07 52.9 3.3 23 139-161 167-189 (418)
420 1e6c_A Shikimate kinase; phosp 94.3 0.023 7.7E-07 45.4 2.9 21 141-161 4-24 (173)
421 3r20_A Cytidylate kinase; stru 94.3 0.025 8.4E-07 48.2 3.2 23 138-160 8-30 (233)
422 3umf_A Adenylate kinase; rossm 94.3 0.028 9.6E-07 47.3 3.5 27 292-320 191-217 (217)
423 1in4_A RUVB, holliday junction 94.2 0.02 6.9E-07 51.4 2.7 22 141-162 53-74 (334)
424 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.023 8E-07 47.4 2.9 26 136-161 20-45 (235)
425 1iy2_A ATP-dependent metallopr 94.2 0.064 2.2E-06 46.6 5.8 20 142-161 76-95 (278)
426 3kta_A Chromosome segregation 94.2 0.024 8.2E-07 45.8 2.8 20 141-160 28-47 (182)
427 2grj_A Dephospho-COA kinase; T 94.2 0.032 1.1E-06 46.0 3.5 26 137-162 10-35 (192)
428 1zuh_A Shikimate kinase; alpha 94.2 0.028 9.6E-07 44.7 3.1 22 140-161 8-29 (168)
429 2ze6_A Isopentenyl transferase 94.2 0.025 8.6E-07 48.7 3.0 21 141-161 3-23 (253)
430 2ce7_A Cell division protein F 94.1 0.17 5.9E-06 47.7 8.9 22 140-161 50-71 (476)
431 1yqt_A RNAse L inhibitor; ATP- 94.1 0.027 9.1E-07 54.2 3.3 27 137-163 45-71 (538)
432 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.038 1.3E-06 52.0 4.3 27 136-162 135-161 (460)
433 3nwj_A ATSK2; P loop, shikimat 94.0 0.024 8.1E-07 48.8 2.5 23 139-161 48-70 (250)
434 3d8b_A Fidgetin-like protein 1 94.0 0.12 4.3E-06 46.6 7.4 25 137-161 115-139 (357)
435 2obl_A ESCN; ATPase, hydrolase 93.9 0.027 9.2E-07 51.0 2.8 26 137-162 69-94 (347)
436 3b60_A Lipid A export ATP-bind 93.9 0.03 1E-06 54.3 3.3 25 138-162 368-392 (582)
437 3ozx_A RNAse L inhibitor; ATP 93.9 0.034 1.2E-06 53.3 3.6 27 138-164 24-50 (538)
438 2cvh_A DNA repair and recombin 93.8 0.033 1.1E-06 46.1 3.1 27 135-161 16-42 (220)
439 1cr0_A DNA primase/helicase; R 93.8 0.03 1E-06 49.1 3.0 26 136-161 32-57 (296)
440 2yl4_A ATP-binding cassette SU 93.8 0.03 1E-06 54.4 3.1 27 137-163 368-394 (595)
441 2p65_A Hypothetical protein PF 93.8 0.031 1E-06 44.7 2.7 23 139-161 43-65 (187)
442 1lv7_A FTSH; alpha/beta domain 93.8 0.045 1.5E-06 46.9 3.8 23 139-161 45-67 (257)
443 3b5x_A Lipid A export ATP-bind 93.8 0.034 1.2E-06 53.9 3.4 27 137-163 367-393 (582)
444 1q3t_A Cytidylate kinase; nucl 93.8 0.036 1.2E-06 47.0 3.2 27 135-161 12-38 (236)
445 3euj_A Chromosome partition pr 93.7 0.031 1E-06 52.8 2.9 22 140-161 30-51 (483)
446 1svm_A Large T antigen; AAA+ f 93.7 0.035 1.2E-06 50.7 3.1 26 136-161 166-191 (377)
447 3bos_A Putative DNA replicatio 93.6 0.042 1.4E-06 46.0 3.4 24 138-161 51-74 (242)
448 2zan_A Vacuolar protein sortin 93.6 0.34 1.2E-05 45.2 9.9 23 139-161 167-189 (444)
449 3qf4_B Uncharacterized ABC tra 93.6 0.035 1.2E-06 54.0 3.2 27 137-163 379-405 (598)
450 3vfd_A Spastin; ATPase, microt 93.6 0.12 4E-06 47.3 6.6 24 138-161 147-170 (389)
451 3q9l_A Septum site-determining 93.6 0.53 1.8E-05 39.8 10.4 67 186-269 113-185 (260)
452 1ltq_A Polynucleotide kinase; 93.6 0.042 1.5E-06 48.2 3.4 22 140-161 3-24 (301)
453 1n0w_A DNA repair protein RAD5 93.5 0.036 1.2E-06 46.7 2.8 27 135-161 20-46 (243)
454 1p5z_B DCK, deoxycytidine kina 93.5 0.031 1.1E-06 48.2 2.4 27 136-162 21-47 (263)
455 3bk7_A ABC transporter ATP-bin 93.5 0.038 1.3E-06 53.8 3.3 28 137-164 115-142 (607)
456 3j16_B RLI1P; ribosome recycli 93.5 0.046 1.6E-06 53.2 3.8 28 138-165 102-129 (608)
457 3n70_A Transport activator; si 93.5 0.064 2.2E-06 41.7 4.0 24 138-161 23-46 (145)
458 1f2t_A RAD50 ABC-ATPase; DNA d 93.5 0.044 1.5E-06 43.1 3.0 20 141-160 25-44 (149)
459 4a82_A Cystic fibrosis transme 93.4 0.03 1E-06 54.3 2.4 26 137-162 365-390 (578)
460 2w58_A DNAI, primosome compone 93.4 0.047 1.6E-06 44.8 3.3 22 140-161 55-76 (202)
461 2qmh_A HPR kinase/phosphorylas 93.4 0.056 1.9E-06 44.7 3.6 25 138-162 33-57 (205)
462 3ozx_A RNAse L inhibitor; ATP 93.3 0.051 1.7E-06 52.2 3.7 25 139-163 294-318 (538)
463 2dpy_A FLII, flagellum-specifi 93.3 0.04 1.4E-06 51.4 2.9 26 137-162 155-180 (438)
464 3qf4_A ABC transporter, ATP-bi 93.2 0.04 1.4E-06 53.5 2.8 25 138-162 368-392 (587)
465 1yqt_A RNAse L inhibitor; ATP- 93.1 0.057 2E-06 51.8 3.8 25 139-163 312-336 (538)
466 2ocp_A DGK, deoxyguanosine kin 93.0 0.059 2E-06 45.7 3.3 23 139-161 2-24 (241)
467 3qf7_A RAD50; ABC-ATPase, ATPa 93.0 0.05 1.7E-06 49.5 3.0 20 141-160 25-44 (365)
468 3bk7_A ABC transporter ATP-bin 92.9 0.063 2.2E-06 52.3 3.8 26 139-164 382-407 (607)
469 1a7j_A Phosphoribulokinase; tr 92.9 0.038 1.3E-06 48.6 2.0 24 138-161 4-27 (290)
470 3cr8_A Sulfate adenylyltranfer 92.9 0.05 1.7E-06 52.4 2.9 27 136-162 366-392 (552)
471 2chg_A Replication factor C sm 92.8 0.059 2E-06 44.2 3.0 20 142-161 41-60 (226)
472 3ake_A Cytidylate kinase; CMP 92.8 0.064 2.2E-06 44.0 3.2 21 141-161 4-24 (208)
473 1tue_A Replication protein E1; 92.8 0.049 1.7E-06 45.3 2.4 21 141-161 60-80 (212)
474 1njg_A DNA polymerase III subu 92.7 0.06 2.1E-06 44.7 3.0 21 141-161 47-67 (250)
475 3gmt_A Adenylate kinase; ssgci 92.7 0.069 2.4E-06 45.3 3.2 24 138-161 7-30 (230)
476 3j16_B RLI1P; ribosome recycli 92.5 0.067 2.3E-06 52.1 3.3 25 141-165 380-404 (608)
477 3zvl_A Bifunctional polynucleo 92.5 0.075 2.6E-06 49.3 3.5 25 138-162 257-281 (416)
478 1nlf_A Regulatory protein REPA 92.4 0.063 2.2E-06 46.7 2.7 26 136-161 27-52 (279)
479 3a8t_A Adenylate isopentenyltr 92.3 0.096 3.3E-06 47.0 3.9 24 139-162 40-63 (339)
480 3v9p_A DTMP kinase, thymidylat 92.3 0.073 2.5E-06 45.0 2.9 25 137-161 23-47 (227)
481 3syl_A Protein CBBX; photosynt 92.2 0.081 2.8E-06 46.4 3.3 25 137-161 65-89 (309)
482 3cf0_A Transitional endoplasmi 92.2 0.078 2.7E-06 46.7 3.1 25 137-161 47-71 (301)
483 4fcw_A Chaperone protein CLPB; 92.2 0.17 5.8E-06 44.3 5.3 22 140-161 48-69 (311)
484 4edh_A DTMP kinase, thymidylat 92.2 0.099 3.4E-06 43.7 3.6 24 138-161 5-28 (213)
485 2ga8_A Hypothetical 39.9 kDa p 92.1 0.2 6.7E-06 45.3 5.6 23 139-161 24-46 (359)
486 3co5_A Putative two-component 92.0 0.075 2.6E-06 41.2 2.5 23 139-161 27-49 (143)
487 1sxj_E Activator 1 40 kDa subu 92.0 0.064 2.2E-06 48.1 2.3 20 142-161 39-58 (354)
488 4f4c_A Multidrug resistance pr 92.0 0.063 2.1E-06 57.1 2.6 26 137-162 1103-1128(1321)
489 1l8q_A Chromosomal replication 91.9 0.073 2.5E-06 47.3 2.6 22 140-161 38-59 (324)
490 3exa_A TRNA delta(2)-isopenten 91.8 0.11 3.7E-06 46.2 3.5 23 140-162 4-26 (322)
491 2qby_A CDC6 homolog 1, cell di 91.8 0.072 2.4E-06 48.0 2.5 24 138-161 44-67 (386)
492 3d3q_A TRNA delta(2)-isopenten 91.8 0.1 3.5E-06 46.9 3.4 22 140-161 8-29 (340)
493 3crm_A TRNA delta(2)-isopenten 91.7 0.11 3.6E-06 46.4 3.4 22 140-161 6-27 (323)
494 1fnn_A CDC6P, cell division co 91.7 0.085 2.9E-06 47.7 2.9 21 141-161 46-66 (389)
495 3pfi_A Holliday junction ATP-d 91.7 0.19 6.4E-06 44.7 5.1 23 139-161 55-77 (338)
496 2h92_A Cytidylate kinase; ross 91.7 0.087 3E-06 43.7 2.7 23 139-161 3-25 (219)
497 3qks_A DNA double-strand break 91.7 0.099 3.4E-06 43.3 3.0 20 141-160 25-44 (203)
498 1ofh_A ATP-dependent HSL prote 91.6 0.091 3.1E-06 45.9 2.9 24 138-161 49-72 (310)
499 3cf2_A TER ATPase, transitiona 91.6 0.26 8.9E-06 49.4 6.4 26 137-162 236-261 (806)
500 2iw3_A Elongation factor 3A; a 91.6 0.064 2.2E-06 54.9 2.1 25 139-163 699-723 (986)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.1e-24 Score=197.30 Aligned_cols=176 Identities=28% Similarity=0.394 Sum_probs=135.4
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
..+....|+++|.||||||||+|+|++.++..++..+++|+.......... +..+.||||||+..+.. .........
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~--~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK--SDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT--TCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc--chhHHHHHH
Confidence 345567899999999999999999999998888999999999888887777 88999999999986541 112233344
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC-CCCcE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYERI 292 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 292 (322)
..+...+..+|++++|+|++++.+..+.. .|+..+... +.|+++|+||+|+.............+.... ...++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~--~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEE--IYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHH--HHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 55556678899999999998765544432 335555543 5689999999999844455555555565555 45679
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|+++++++|.+.+.+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccC
Confidence 9999999999999999999998754
No 2
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=2.1e-24 Score=178.75 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=119.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.+.+|+++|.+|||||||+|+|.+.....+...+++|.+.....+...+..+.+|||||+..+.. ......+...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh----HHHHHHHHHHH
Confidence 46789999999999999999999887666677788887776666667777899999999975321 11122345566
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|+++..+.....+...+... ...+.|+++|+||+|+..... .+....+ .++++|||
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~-~~~~~~SA 147 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR---LPAKLPITVVRNKADITGETL-------GMSEVNG-HALIRLSA 147 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH---SCTTCCEEEEEECHHHHCCCC-------EEEEETT-EEEEECCT
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHh---cccCCCEEEEEECccCCcchh-------hhhhccC-CceEEEeC
Confidence 678899999999999887766544333333332 223578999999999854211 1112222 36899999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|.|+++++++|.+.+..
T Consensus 148 ~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTCTTHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 9999999999999988754
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=6.5e-25 Score=209.14 Aligned_cols=247 Identities=20% Similarity=0.227 Sum_probs=152.8
Q ss_pred CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhCCeEEEeec-cccchhhhhHHH
Q 020714 45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE 104 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~~~i~f~~~-~~~~~~~~~~~~ 104 (322)
.+|+++-+.|++.++.. -||+|+.... ..+..++.......+..++ ++.|..+++...
T Consensus 102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i 179 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAV 179 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHHHHHHH
T ss_pred hCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHHHHHHH
Confidence 47888888887754332 3888876432 2222333222334556666 666766652111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee
Q 020714 105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184 (322)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~ 184 (322)
...+.... ........++|+++|.+|||||||+|+|++.....++..+++|.+.....+..
T Consensus 180 --------------~~~l~~~~-----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~ 240 (456)
T 4dcu_A 180 --------------AEHFKNIP-----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY 240 (456)
T ss_dssp --------------HTTGGGSC-----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE
T ss_pred --------------Hhhccccc-----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE
Confidence 11110000 01223457899999999999999999999887777888899998876666667
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..+.||||||+........ .........++..+..+|++++|+|++.+..+.+..+..++.. .+.|+++|+
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~------~~~~~ilv~ 313 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE------AGKAVVIVV 313 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCC-CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEEE
T ss_pred CCceEEEEECCCCCcCcccch-HHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH------cCCCEEEEE
Confidence 788999999999864322111 1112233445556788999999999988766665555555544 246899999
Q ss_pred eCCCCCCChhH-HHH---HHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 265 NKVDLVTKKKD-LLK---VAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 265 NK~Dl~~~~~~-~~~---~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
||+|+...... .++ .........+..++++|||++|.|+++++++|.+.+..+..
T Consensus 314 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 314 NKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp ECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 99999865332 222 22222222234579999999999999999999998876644
No 4
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=3.6e-24 Score=193.03 Aligned_cols=169 Identities=25% Similarity=0.308 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+..+|+++|.||||||||+|+|++.++..++..+++|++.........+..+.||||||+..+.. .........+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~----~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----ALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS----HHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh----HHHHHHHHHHH
Confidence 34579999999999999999999998887888889998877777767788999999999986432 22222344555
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++++|+|++++.+..+..+. ..+... .++.|+++|+||+|+.............+ .++.+++++||
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~---~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA 154 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVA---RALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSA 154 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHH---HHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCT
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHH---HHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeC
Confidence 678899999999999876554433332 333322 13578999999999986543122333333 44557999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 020714 298 LKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~~ 317 (322)
++|.|+++++++|.+.+.+.
T Consensus 155 ~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 155 LDERQVAELKADLLALMPEG 174 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCBC
T ss_pred CCCCCHHHHHHHHHHhcccC
Confidence 99999999999999877543
No 5
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.91 E-value=4.1e-25 Score=189.89 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=113.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+.+||+|+|.+|||||||++++....+... .++.+................+.||||+|...+.. +.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~------l~------ 79 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS------LI------ 79 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG------GH------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh------HH------
Confidence 568999999999999999999987765432 22223222222221222234678999999986532 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
-..++.++++++|||+++..+. ..+..|+..+.....++.|+++|+||+|+...+.+..+....++..++. ++++||
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf--~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~S 156 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSF--QQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETS 156 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEB
T ss_pred HHHhccccEEEEEeecchhHHH--HHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEe
Confidence 1346788999999999764333 3455677666655556789999999999987655555556666666666 599999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.||+++|+.|.+.+..
T Consensus 157 Aktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=9.3e-25 Score=206.92 Aligned_cols=245 Identities=21% Similarity=0.241 Sum_probs=151.8
Q ss_pred CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhC-CeEEEeec-cccchhhhhHH
Q 020714 45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQE 103 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~-~~i~f~~~-~~~~~~~~~~~ 103 (322)
.+|+++-+.|++.+... -||+|+...+. .+..++ ..+ ..++..++ ++.|...+++.
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~ 158 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDA 158 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHH
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHH
Confidence 48888888887665433 28999865421 111122 233 35677777 78887766322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT 183 (322)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~ 183 (322)
. . ..+.... ........++|+++|.||||||||+|+|++.....++..+++|++.....+.
T Consensus 159 i-------------~-~~l~~~~-----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~ 219 (436)
T 2hjg_A 159 V-------------A-EHFKNIP-----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT 219 (436)
T ss_dssp H-------------H-HTGGGCC-----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE
T ss_pred H-------------H-HhcCccc-----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE
Confidence 1 1 1111000 0012235689999999999999999999998877788889999887766677
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..+.||||||+........ ........+++..+..+|++++|+|++++.+.++..+...+.. .+.|+++|
T Consensus 220 ~~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~------~~~~iiiv 292 (436)
T 2hjg_A 220 YNQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE------AGKAVVIV 292 (436)
T ss_dssp ETTEEEEETTHHHHTCBTTBCC-CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCEEEEE
T ss_pred ECCeEEEEEECCCcCcCccccc-hHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH------cCCcEEEE
Confidence 7788899999999965432111 0011223344556788999999999988777665444333332 25789999
Q ss_pred EeCCCCCCChhH-HHHH----HHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 264 MNKVDLVTKKKD-LLKV----AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 264 ~NK~Dl~~~~~~-~~~~----~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+||+|+...... .++. ...+....+ .+++++||++|.|++++++.+.+.+..+..
T Consensus 293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 293 VNKWDAVDKDESTMKEFEENIRDHFQFLDY-APILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp EECGGGSCCCTTHHHHHHHHHHHHCGGGTT-SCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EECccCCCcchHHHHHHHHHHHHhcccCCC-CCEEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 999999865332 2222 233333333 479999999999999999999998876543
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.1e-23 Score=181.15 Aligned_cols=175 Identities=20% Similarity=0.237 Sum_probs=122.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCC-hhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYS-HKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~ 213 (322)
...++|+++|.+|||||||+|+|++.. ...+...+++|......... ..+..+.||||||+........ ........
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356899999999999999999999986 56677788888876554443 4467899999999865432222 12223344
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcC----
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHL---- 286 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~---- 286 (322)
...+.....+|++++|+|++++.+..+..+..++ ... +.|+++|+||+|+...... .......+...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l---~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWF---APT---GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---GGG---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHH---Hhc---CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 4555556678999999999876554443443333 332 4679999999999875331 22222333332
Q ss_pred -CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 287 -PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 287 -~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
....+++++||++|.|+++++++|.+.+...
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 2344799999999999999999999988654
No 8
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=4.7e-24 Score=174.61 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.++|+++|.+|||||||+|++.+.........++++..... ........+.+|||||...+... ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~------------~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQDGGRWL------------PGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCccchhh------------hhh
Confidence 57899999999999999999998877666666776664322 22223456789999998754221 112
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
.+..+|++++|+|++++.+ ...+..++..+.. ...++.|+++|+||+|+.............+....+. +++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 145 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGS--FEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSA 145 (166)
T ss_dssp ----CCEEEEEEETTCHHH--HHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBG
T ss_pred hhhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEecc
Confidence 3577899999999975422 2334455555443 2335689999999999986554444444555555555 6999999
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 020714 298 LKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~~ 317 (322)
++|.|+++++++|.+.+.++
T Consensus 146 ~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 146 ALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GGTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 9
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=6.1e-23 Score=172.26 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=121.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 215 (322)
...++|+++|.+|||||||+|+|++.........+++|...... ..+..+.+|||||+........ ..........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 45689999999999999999999998877777778877765543 2356899999999754322111 1112223334
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 293 (322)
.+.....+|++++|+|++......+..+..++... +.|+++|+||+|+..... ...+....+....+..+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 44455677999999999776555555555666554 467999999999976432 2333344444444445799
Q ss_pred EeecCCCCCHHHHHHHHHHHhhh
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++||++|.|+++++++|.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998864
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=5.8e-24 Score=201.61 Aligned_cols=252 Identities=20% Similarity=0.213 Sum_probs=154.5
Q ss_pred CCceEEEccccCCCCCC-------------------CCCCCCCCCCChhhHHHHHHhhCC-eEEEeec-cccchhhhhHH
Q 020714 45 DCDSVFDSSYFRIPTID-------------------DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQE 103 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-------------------~~k~dl~~~~~~~~w~~~~~~~~~-~i~f~~~-~~~~~~~~~~~ 103 (322)
.+|+++-+.|++.+... -||+|+........|..++ ..+. .++..++ ++.|...+++.
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~ 159 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLET 159 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHH
Confidence 58999998888765432 2899975431122223333 3443 5677777 88888777322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe
Q 020714 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT 183 (322)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~ 183 (322)
. .+...+.... . .........++|+++|.||||||||+|+|++.....++..+|+|++...+.+.
T Consensus 160 i-------------~~~l~~~~~~-~-~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~ 224 (439)
T 1mky_A 160 I-------------IKKLEEKGLD-L-ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF 224 (439)
T ss_dssp H-------------HHHHHHTTCC-S-SSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE
T ss_pred H-------------HHhccccccc-c-hhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE
Confidence 1 1111111000 0 00001235689999999999999999999998877788999999887777777
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..+.+|||||+.................+++..+..+|++++|+|++.+.+..+..+...+... +.|+++|
T Consensus 225 ~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~------~~~~ilv 298 (439)
T 1mky_A 225 IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR------GRASVVV 298 (439)
T ss_dssp ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEE
T ss_pred ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEE
Confidence 7888999999999854322110000000012234456778999999999876655544444444332 4679999
Q ss_pred EeCCCCCCChhH-HHHH----HHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 264 MNKVDLVTKKKD-LLKV----AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 264 ~NK~Dl~~~~~~-~~~~----~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+||+|+...... ..+. ...+... ...+++++||++|.|++++++.|.+.+..+..
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 299 FNKWDLVVHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp EECGGGSTTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred EECccCCCchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 999999765331 2222 2333332 23479999999999999999999998876543
No 11
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=175.04 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=105.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
..++|+++|.+|||||||+|+|.+.........++++.......+......+.+|||||...... .. .. .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~----~~--~ 72 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK----SW----SQ--E 72 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-----------CH----HH--H
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccch----hh----hH--H
Confidence 46899999999999999999999988766666666654433322221234688999999864210 11 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
..+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+...+....+....+....+. +++++|
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSF--ESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHH--HHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECB
T ss_pred hhcccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEe
Confidence 346778999999999654322 2344455444432 234688999999999986543322333344433444 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhhc
Q 020714 297 GLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~~ 317 (322)
|++|.|+++++++|.+.+...
T Consensus 150 a~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988654
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=5.7e-24 Score=173.09 Aligned_cols=159 Identities=26% Similarity=0.295 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++|+++|.+|||||||+|++.+.........+++|.+.........+..+.+|||||+..+.. .. . .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~-~---~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WE-K---KIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CC-H---HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hH-H---HHHHHHHHH
Confidence 579999999999999999999887665666777777766666666778899999999976432 11 1 112223345
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..+|++++|+|++++.+..+..+..++.. .+.|+++|+||+|+...... ...+. ..+..+++++||++
T Consensus 77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELTQADYEVAEYLRR------KGKPVILVATKVDDPKHELY----LGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp TTTCSEEEEEEESSSCCCHHHHHHHHHHHH------HTCCEEEEEECCCSGGGGGG----CGGGG-GGSSCSCEECBTTT
T ss_pred HHhCCEEEEEEECCCcccHhHHHHHHHHHh------cCCCEEEEEECcccccchHh----HHHHH-hCCCCCeEEEeccc
Confidence 788999999999987655544445555554 24679999999999765322 22233 23454699999999
Q ss_pred CCCHHHHHHHHHHHh
Q 020714 300 GAGLKALTQYLMEQF 314 (322)
Q Consensus 300 g~gi~el~~~i~~~l 314 (322)
|.|+++++++|.+.+
T Consensus 146 ~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 146 ARGLEELLEAIWERL 160 (161)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHhC
Confidence 999999999998875
No 13
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.1e-23 Score=174.62 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=111.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|.+.........+.++.+.........+ ..+.+|||||...+..
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------- 75 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS----------- 75 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-----------
Confidence 345789999999999999999999987764333334333333333333344 4789999999764321
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
.....+..+|++++|+|++++.+. ..+..|+..+......+.|+++|+||+|+........+....+....+. +++
T Consensus 76 -~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 151 (180)
T 2g6b_A 76 -VTHAYYRDAHALLLLYDVTNKASF--DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFM 151 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEE
T ss_pred -HHHHHccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEE
Confidence 122456889999999999654322 2344555555443334688999999999986543323333344433444 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
++||++|.|+++++++|.+.+.++..
T Consensus 152 ~~Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 152 ETSAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC---
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999877544
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=7e-23 Score=172.26 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=108.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCC-hhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++.. .......+++|........ +..+.+|||||+........ .........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 457899999999999999999999886 4556677777766554322 45899999999764332110 111122233
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCCCc
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYER 291 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~ 291 (322)
..+.....+|++++|+|++++.+..+..+..++.. .+.|+++|+||+|+....... .+....+... ...+
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 170 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDE 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCc
Confidence 33334455699999999987665555445555554 256799999999998754322 2222334332 3347
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhh
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
++++||++|.|+++++++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998774
No 15
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.8e-23 Score=193.11 Aligned_cols=172 Identities=22% Similarity=0.310 Sum_probs=118.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|++|||||||+|+|.+.. ..++..+++|...........+..+.+|||||+..+........... ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQ---AI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHH---HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHH---HH
Confidence 567899999999999999999999887 44566677777777666666678899999999976433221111111 12
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
......+|++++|+|++............++..+..... +.|+++|+||+|+..... ......... ..+. ++++||
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~-~~~~~~~~~-~~~~-~~~~iS 316 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN-IKRLEKFVK-EKGL-NPIKIS 316 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH-HHHHHHHHH-HTTC-CCEECB
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH-HHHHHHHHH-hcCC-CeEEEe
Confidence 233456899999999876543233334455555443211 578999999999976432 222222222 2333 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|+|+++++++|.+.+..
T Consensus 317 A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998865
No 16
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=4.2e-23 Score=178.65 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=117.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||+|+|++..+. ....+++|...........+..+.+|||||+........ ... .+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~--~~~~~ 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR-NTI--EMTTI 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC-CHH--HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh-hhH--HHHHH
Confidence 45799999999999999999999998765 455667777766655556678899999999964321000 000 01111
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcCCC-CCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPG-YERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~~~-~~~~ 292 (322)
...+..+|++++|+|+++..+........++..+... .++.|+++|+||+|+...... .......+....+ ..++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 1235677999999999887665544445566665543 236789999999999765332 2223444444333 2369
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++|||++|.||++++++|.+.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=2.5e-23 Score=198.19 Aligned_cols=166 Identities=21% Similarity=0.263 Sum_probs=101.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..+++|+++|.||||||||+|+|++.....++..+++|++.....+...+..+.+|||||+..+.. .....++..+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~----~ve~~gi~~~ 306 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE----EIEHEGIRRS 306 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh----HHHHHHHHHH
Confidence 457899999999999999999999988777888899999887777778889999999999975432 1112345677
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
+..+..+|++++|+|++++.+.... ....++..+. +.|+++|+||+|+........ ..+... +..++++|
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~~~---~~l~~~-~~~~~i~v 377 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADALI---RAIADG-TGTEVIGI 377 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHHHH---HHHHHH-HTSCEEEC
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccchhH---HHHHhc-CCCceEEE
Confidence 7889999999999999887655322 3344555544 578999999999987644321 222221 12469999
Q ss_pred ecCCCCCHHHHHHHHHHHhh
Q 020714 296 SGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~ 315 (322)
||++|.|+++++++|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999886
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=5.4e-24 Score=174.65 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=113.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+.++|+++|.+|||||||+|+|.+.... ...+..+.+..............+.+|||||+..+.. ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 72 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA------------LA 72 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------------GT
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc------------cc
Confidence 4689999999999999999999987643 2334444444333322222346789999999864321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..+|++++|+|++++.+. ..+..|+..+.....+..|+++|+||+|+........+....+....+. +++++|
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S 149 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETF--STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETS 149 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred HhhCcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEe
Confidence 1345778999999999654322 2344566655544456788999999999976444333444455544554 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+.+
T Consensus 150 a~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 150 AKNAININELFIEISRRIPS 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 19
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=7.6e-24 Score=178.29 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=116.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|++..+. ...+..+.+..............+.+|||||...+...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 88 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL----------- 88 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG-----------
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh-----------
Confidence 356799999999999999999999987643 34455555544443323234557899999998654221
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus 89 -~~~~~~~~d~iilV~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 164 (192)
T 2fg5_A 89 -APMYYRGSAAAVIVYDITKQDS--FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVE 164 (192)
T ss_dssp -THHHHTTCSEEEEEEETTCTHH--HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEE
T ss_pred -hHHhhccCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 1134577899999999976432 23445566666544445689999999999975333333344555555565 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.+.
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC--
T ss_pred EeCCCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=171.80 Aligned_cols=164 Identities=20% Similarity=0.178 Sum_probs=114.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..... ...++.+.+.....+...+ ..+.+|||||...+.....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------- 76 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS--------- 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH---------
Confidence 467899999999999999999999877552 2334444444434444455 5789999999876543221
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|+|++++. ....+..|+..+... .++.|+++|+||+|+.............+....+. ++++
T Consensus 77 ---~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (181)
T 3tw8_B 77 ---TYYRGTHGVIVVYDVTSAE--SFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFE 149 (181)
T ss_dssp ---GGGTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEE
T ss_pred ---HHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEE
Confidence 3467889999999997642 223445566666543 24688999999999876543332333444444454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.+.
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 150 TSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 21
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=8.4e-24 Score=173.32 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=111.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..++|+++|.+|||||||+|+|++...... ....+.+...........+..+.+|||||...+.. ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~~ 72 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS------------LA 72 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------------GH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh------------hh
Confidence 568999999999999999999997665432 23333333333222222355789999999865321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..+|++++|+|++++.+ ...+..|+..+.....++.|+++|+||+|+........+....+....+. +++++|
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 149 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEES--FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETS 149 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHH--HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred HHhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEEe
Confidence 234577899999999965422 22344566665544445788999999999965433222233344444454 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+.+
T Consensus 150 a~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987754
No 22
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=1.9e-23 Score=175.19 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=113.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|++..+.. .....+.+..............+.+|||||...+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 87 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI----------- 87 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-----------
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----------
Confidence 3457899999999999999999999876542 2233333333222222222457899999998765331
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus 88 -~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (189)
T 2gf9_A 88 -TTAYYRGAMGFLLMYDIANQESF--AAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFE 163 (189)
T ss_dssp -GGGGGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred -HHHhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEE
Confidence 12456788999999999653322 2344566555544345688999999999976433222333444444454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.++
T Consensus 164 ~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 164 ASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 23
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=1.3e-23 Score=174.22 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|++.+..+....+..+... ...+...+ ..+.+|||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~---------------- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD---------------- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE---EEEEEETTEEEEEEEEECSSSCC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE---EEEEEECCEEEEEEEEECCCCch----------------
Confidence 56899999999999999999999877654333333221 22233333 4678999999863
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCC--ChhHHHHHHHHHhcCCCCCcE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 292 (322)
...+..+|++++|+|++++.+.... .+..++..+.....++.|+++|+||+|+.. .+....+....+....+..++
T Consensus 67 -~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (178)
T 2iwr_A 67 -AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSY 145 (178)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEE
T ss_pred -hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeE
Confidence 1234668999999999764333222 222345555544345789999999999942 222222223333332222369
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|++++|++|.+.+...
T Consensus 146 ~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 146 YETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 24
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=175.46 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=115.0
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
.....++|+|+|.+|||||||+|+|++..+.... ...+.+...........+..+.+|||||+..+...
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 90 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI---------- 90 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT----------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh----------
Confidence 3456799999999999999999999987655332 22233332222222223457899999998754320
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.............+....+. +++
T Consensus 91 --~~~~~~~~d~vi~v~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 165 (193)
T 2oil_A 91 --TSAYYRGAVGALLVFDLTKHQTY--AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFL 165 (193)
T ss_dssp --HHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred --hHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEE
Confidence 11345778999999999653221 2344566666554445789999999999976433223334444444555 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++||++|.|+++++++|.+.+.++
T Consensus 166 ~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 166 ETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp EECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=5.4e-23 Score=172.97 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=117.4
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
.....++|+++|.+|||||||+|+|.+....... .+.++.+.....+...+ ..+.+|||||...+...
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------- 81 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--------- 81 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT---------
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh---------
Confidence 3456789999999999999999999987654322 23333333333344444 56899999998754321
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.............+....+. ++
T Consensus 82 ---~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 155 (196)
T 3tkl_A 82 ---TSSYYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PF 155 (196)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CE
T ss_pred ---HHHHHhhCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cE
Confidence 11345778999999999763322 2344565555544445688999999999987654433444555555565 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|++++|++|.+.+.++
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.90 E-value=2.2e-23 Score=172.47 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=110.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|.+..+... ....+.+..............+.+|||||...+..
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 79 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA------------ 79 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh------------
Confidence 34579999999999999999999998765422 22223332222221212235789999999764321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLE 156 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred hHHHHhccCCEEEEEEeCcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 112345678999999999764222 2344555555544445789999999999975433222333444444455 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|+++++++|.+.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 157 ASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 27
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=4.1e-23 Score=175.03 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=112.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..++|+++|.+|||||||+|+|++..+.. ..+..+.+..............+.+|||||+..+. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~~~ 74 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR------------TIT 74 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------------HHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc------------chH
Confidence 46899999999999999999999876542 22333333322222222224578999999986431 122
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
...+..+|++++|+|++++.+ ...+..|+..+......+.|+++|+||+|+.............+....+. +++++|
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEAS 151 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHH--HHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECB
T ss_pred HHhhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEE
Confidence 345788999999999965422 22345566666544445688999999999976543333334444444455 699999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 020714 297 GLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~ 316 (322)
|++|.|+++++++|.+.+.+
T Consensus 152 a~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 28
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.8e-23 Score=174.83 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=108.2
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+...+ ..+.+|||||...+. .
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~----- 90 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN------S----- 90 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH------H-----
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH------H-----
Confidence 345789999999999999999999987654322 12222222222233333 478999999976431 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
.....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+........+....+.......+++
T Consensus 91 -~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 91 -ITSAYYRSAKGIILVYDITKKETF--DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred -HHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence 122345678999999999764322 22344555554433446889999999999764433333344555543334799
Q ss_pred EeecCCCCCHHHHHHHHHHHhhh
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++||++|.|+++++++|.+.+.+
T Consensus 168 ~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 168 EASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.90 E-value=2.7e-23 Score=172.52 Aligned_cols=166 Identities=19% Similarity=0.218 Sum_probs=112.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++|+++|.+|||||||+|+|++..+.... ...+.+..............+.+|||||...+.. .
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~ 77 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS------------L 77 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG------------G
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh------------h
Confidence 45689999999999999999999987654322 2223332222221222245789999999765322 0
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
....+..+|++++|+|++++.+. .....|+..+.....++.|+++|+||+|+........+....+....+. +++++
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 154 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASF--ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMET 154 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred hHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEE
Confidence 11345778999999999653322 2345566666554445789999999999976544333334444444555 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|+++++++|.+.+.+.
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC--
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987653
No 30
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=3.7e-23 Score=169.14 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=104.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+.++|+++|.+|||||||+|+|.+....... ..++........... ...+.+|||||...+.. ..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~----- 68 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA------MR----- 68 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSC--CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT------HH-----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccceEEEEEEECCEEEEEEEEECCChHHHHH------HH-----
Confidence 3589999999999999999999986543221 122222222222233 34688999999875432 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
...+..+|++++|+|+++..+. ..+..++..+... ...+.|+++|+||+|+...+....+....+....+..++++
T Consensus 69 -~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 69 -DLYMKNGQGFALVYSITAQSTF--NDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred -HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 1234568999999999654222 1233344333221 23467899999999997643332333344444343347999
Q ss_pred eecCCCCCHHHHHHHHHHHhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~ 315 (322)
+||++|.|+++++++|.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHHT
T ss_pred ecCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998774
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.3e-23 Score=172.18 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=109.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
.++|+++|.+|||||||+|++.+..... ..+..+.+..............+.+|||||...+.. ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------------~~~ 70 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS------------LAP 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG------------GHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh------------hhh
Confidence 5789999999999999999999876542 223333333222222222234789999999764321 112
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC---hhHHHHHHHHHhcCCCCCcEEE
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|+|++++.+. ..+..|+..+.....++.|+++|+||+|+... .....+....+....+. ++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~ 147 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFE 147 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEE
T ss_pred hhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEE
Confidence 345788999999999654222 34445666655444457889999999999754 22333334444443444 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|+++++++|.+.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTTSCC
T ss_pred EeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999987653
No 32
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=1.6e-22 Score=166.11 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=110.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.+|||||||+|++.+..+....+..+ .....+...+..+.+|||||...+.. ..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 68 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLTSIRP------------YW 68 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCGGGGG------------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCChhhhH------------HH
Confidence 457899999999999999999998876543333222 22233445678899999999865321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH----hcCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF----KHLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~ 291 (322)
...+..+|++++|+|++++.+. .....++..+. .....+.|+++|+||+|+..... ..+....+ ....+. +
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~ 144 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRI--GISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKW-Q 144 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCE-E
T ss_pred HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCce-E
Confidence 2456789999999999775433 23344444443 22224688999999999976532 12222222 222233 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++++||++|.|+++++++|.+.+.+.
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 99999999999999999999998764
No 33
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.89 E-value=6.7e-23 Score=173.93 Aligned_cols=168 Identities=14% Similarity=0.101 Sum_probs=111.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+...+ ..+.+|||||...+. .
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~----- 93 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ-GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR------T----- 93 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH------H-----
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH------H-----
Confidence 455799999999999999999999877643211 11111222222233344 578999999986431 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
.....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+...+....+....+....+..+++
T Consensus 94 -~~~~~~~~~d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 94 -ITQSYYRSANGAILAYDITKRSSF--LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp -HHHHHHTTCSEEEEEEETTBHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred -HHHHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence 122346788999999999653222 23445666655443456899999999999764332233344455545664699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+|||++|.||++++++|.+.+.+..
T Consensus 171 ~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 171 ETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987653
No 34
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=1.7e-22 Score=171.78 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=114.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+... ..+..+.+.....+...+ ..+.+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 74 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT---------- 74 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT-CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH----------
Confidence 4578999999999999999999998765422 122222222222233333 478999999987654321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
...+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus 75 --~~~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (206)
T 2bcg_Y 75 --SSYYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLE 149 (206)
T ss_dssp --GGGGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEE
T ss_pred --HHhccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEE
Confidence 2356788999999999654322 3445566666544445688999999999986543333334445444555 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.+.
T Consensus 150 ~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 35
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=3e-22 Score=167.72 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=113.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.+|||||||+|++.+.......+..+.+. ..+...+..+.+|||||+..+.....
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~Dt~G~~~~~~~~~----------- 84 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL----ETLQYKNISFEVWDLGGQTGVRPYWR----------- 84 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE----EEEEETTEEEEEEEECCSSSSCCCCS-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE----EEEEECCEEEEEEECCCCHhHHHHHH-----------
Confidence 467999999999999999999998877655444333222 22334678899999999876543221
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 291 (322)
..+..+|++++|+|++++.+. .....++..+. .....+.|+++|+||+|+..... ..+....+. ...+. +
T Consensus 85 -~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~ 159 (189)
T 2x77_A 85 -CYFSDTDAVIYVVDSTDRDRM--GVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTW-T 159 (189)
T ss_dssp -SSSTTCCEEEEEEETTCCTTH--HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-E
T ss_pred -HHhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCce-E
Confidence 346788999999999765433 33444555443 33345789999999999976522 122222221 22233 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+++|||++|.|+++++++|.+.+.++.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (189)
T 2x77_A 160 IVKSSSKTGDGLVEGMDWLVERLREQGL 187 (189)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHTC-
T ss_pred EEEccCCCccCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987653
No 36
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.89 E-value=2.8e-23 Score=170.48 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=106.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|++.+...... ..+..+.......+...+ ..+.+|||||...+..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 70 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK-HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA------------ 70 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS-CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC-CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh------------
Confidence 3568999999999999999999997764321 112222222222233333 3678999999764322
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDS--FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYH 147 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHH--HHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred hHHHHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEE
Confidence 11234678899999999965322 22344555554432223578999999999976433222333444444454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|+++++++|.+.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 148 TSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 37
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=3.9e-23 Score=173.69 Aligned_cols=165 Identities=17% Similarity=0.150 Sum_probs=111.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
....++|+++|.+|||||||+|+|.+..+..... ..+.+.. ...+...+ ..+.+|||||...+....
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------- 87 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMVNIDGKQIKLQIWDTAGQESFRSIT-------- 87 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE--EEEEEETTEEEEEEEECCTTGGGTSCCC--------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE--EEEEEECCEEEEEEEEECCCchhhhhhH--------
Confidence 3457899999999999999999999876543222 2222222 22233333 578999999987654321
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
...+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+........+....+....+. ++
T Consensus 88 ----~~~~~~~d~ii~v~d~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 160 (191)
T 2a5j_A 88 ----RSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IF 160 (191)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EE
T ss_pred ----HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EE
Confidence 1345678999999999653222 2344566666544445789999999999975433222333444443444 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|+++++++|.+.+.++
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 161 METSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999888654
No 38
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=6.6e-23 Score=170.38 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=111.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+.++|+++|.+|||||||+|+|.+..... ....++...........+ ..+.+|||||...+.....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 72 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD--SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ---------- 72 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH----------
Confidence 46899999999999999999999665332 222233322233333444 4678999999886543211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|+|+++..+. ..+..|+..+.. ....+.|+++|+||+|+........+....+....+. ++++
T Consensus 73 --~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (181)
T 3t5g_A 73 --TYSIDINGYILVYSVTSIKSF--EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLE 147 (181)
T ss_dssp --GGTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEE
T ss_pred --HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEE
Confidence 346778999999999653222 234445544432 2234678999999999976554444445555555566 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcC
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+||++|.|+++++++|.+.+....
T Consensus 148 ~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 148 SSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred EecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 39
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.89 E-value=6.8e-23 Score=171.52 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=112.0
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
.....++|+++|.+|||||||+|++++..+...... |.......+...+ ..+.+|||||...+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP---EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ----------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT---TCEEEEEEEEETTEEEEEEEEECSSSCCHH-----------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC---CcceEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 445689999999999999999999988765432221 1222222333444 456789999986421
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCC--ChhHHHHHHHHHhcCCCC
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGY 289 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~--~~~~~~~~~~~~~~~~~~ 289 (322)
.+..+|++++|||+++..+. ..+..|+..+.... ..+.|+++|+||+|+.. ......+....+....+.
T Consensus 82 ------~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~ 153 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEISF--QTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR 153 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT
T ss_pred ------eecCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC
Confidence 34568999999999764322 23455776665432 24678999999999942 222333344455555554
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
.++++|||++|.|++++|++|.+.+....
T Consensus 154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 154 CTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp CEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999887654
No 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.89 E-value=3.8e-23 Score=168.72 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=105.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+.++|+++|.+|||||||+|++.+........ .++...........+ ..+.+|||||...+. ..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~------ 67 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD--PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA------SM------ 67 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------HH------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCC--CCcceeEEEEEEECCEEEEEEEEECCCchhhH------HH------
Confidence 35899999999999999999999776543222 222222222233333 358899999976431 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|+|+++..+. ..+..++..+.. ....+.|+++|+||+|+.............+....+. ++++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 144 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSF--QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFME 144 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEE
T ss_pred HHHHhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEE
Confidence 11235677999999999653221 233444444332 1224688999999999875433323333344443444 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|+++++++|.+.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 41
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=2.9e-22 Score=166.65 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=111.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||+|++.+..+....+..+.+.. .+...+..+.+|||||...+... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~------------~ 79 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTSIRPY------------W 79 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEEETTEEEEEEEEC----CCTT------------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE----EEEECCEEEEEEECCCCHhHHHH------------H
Confidence 4689999999999999999999998877655555553322 23345788999999999764331 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---CCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 292 (322)
...+..+|++++|+|++++.+. .....++..+... ...+.|+++|+||+|+..... ..+....+... ....++
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEE
T ss_pred HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 2356789999999999765332 3345566655433 245789999999999976421 22222222211 111268
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|+++++++|.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988764
No 42
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.89 E-value=2.8e-23 Score=172.95 Aligned_cols=165 Identities=14% Similarity=0.139 Sum_probs=89.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+...+ ..+.+|||||...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 73 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 73 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-----------
Confidence 357899999999999999999998765432 1112223222222233444 67899999998654221
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|+|++++.+ ...+..|+..+.....++.|+++|+||+|+........+....+....+. ++++
T Consensus 74 -~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 149 (183)
T 2fu5_C 74 -TTAYYRGAMGIMLVYDITNEKS--FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFME 149 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHH--HHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEE
T ss_pred -HHHHHhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEE
Confidence 1235678999999999976322 23445566666544445689999999999976433322333344443454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.+.
T Consensus 150 ~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 150 TSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp CCC---CCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=6e-23 Score=168.37 Aligned_cols=163 Identities=16% Similarity=0.165 Sum_probs=107.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|+|.+..+.. ...+..+.+.....+...+ ..+.+|||||...+....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----------- 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT----------- 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH-----------
Confidence 35899999999999999999999776532 1222223222222233333 468999999987654321
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|+|++++.+. ..+..|+..+.....++.|+++|+||+|+..... ..+....+....+. +++++
T Consensus 70 -~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~ 144 (170)
T 1g16_A 70 -TAYYRGAMGIILVYDITDERTF--TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-TADQGEALAKELGI-PFIES 144 (170)
T ss_dssp -HHHHTTEEEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS-CHHHHHHHHHHHTC-CEEEC
T ss_pred -HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc-CHHHHHHHHHHcCC-eEEEE
Confidence 1345778999999999654322 2344555555444345688999999999954322 22233334433454 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|+++++++|.+.+.++
T Consensus 145 Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 145 SAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 44
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=2.1e-22 Score=164.33 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++|+++|.+|||||||+|++.+..+....+..+ .....+...+..+.+|||||...+. . .....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~------~------~~~~~ 64 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIR------P------LWRHY 64 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCCGGGH------H------HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCc----eeEEEEEECCEEEEEEEcCCChhhH------H------HHHHH
Confidence 479999999999999999998766543322222 2222344567889999999986421 1 11234
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCcEEE
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYERIFM 294 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~ 294 (322)
+..+|++++|+|++++.+. .....++..+.. ...++.|+++|+||+|+..... ..+....+. ...+. ++++
T Consensus 65 ~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 140 (164)
T 1r8s_A 65 FQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNW-YIQA 140 (164)
T ss_dssp TTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCE-EEEE
T ss_pred hccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccE-EEEE
Confidence 6889999999999764322 334455555432 2334688999999999976422 222222221 11222 5899
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
|||++|.|+++++++|.+.+.++
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC---
T ss_pred cccCCCcCHHHHHHHHHHHHhhc
Confidence 99999999999999999988654
No 45
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.89 E-value=5.6e-23 Score=167.88 Aligned_cols=162 Identities=17% Similarity=0.101 Sum_probs=104.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|+|.+..+... ..+++...........+ ..+.+|||||...+. ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~------ 68 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED--YEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------AI------ 68 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCC---CH------HH------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC--CCCCcceEEEEEEEECCEEEEEEEEECCCcchhH------HH------
Confidence 468999999999999999999998764322 22233222222233333 478999999976431 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+.............+....+. ++++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVE 145 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred HHHHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEE
Confidence 11235678999999999653222 2334444444322 223578999999999976433222233333333344 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|+++++++|.+.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 46
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.7e-23 Score=175.95 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=115.4
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+|+|.+|||||||+|+|++..+.. .....+.+...........+..+.+|||||...+. .
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~ 87 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR------------T 87 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH------------H
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH------------H
Confidence 3457899999999999999999998765322 22223334333333333345678999999975331 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 164 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESF--NAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFE 164 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred HHHHHHccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEE
Confidence 122346788999999999753222 2344566666554445789999999999975443333444445444455 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.++
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 165 ASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 47
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=1.3e-22 Score=169.31 Aligned_cols=165 Identities=17% Similarity=0.173 Sum_probs=112.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+....... .+..+.......+...+ ..+.+|||||...+. .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~ 74 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS-NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR------------S 74 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC-CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH------------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH------------H
Confidence 45789999999999999999999987654322 22223232223333344 578999999976421 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|++++.+. ..+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 151 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETY--NALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLE 151 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred HHHHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 233567889999999999763322 2344555555433335789999999999965433222333444444454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.+.
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 152 TSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=174.08 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=111.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe--eCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
.+.++|+++|.+|||||||+|+|.+..+..... .++......... .....+.+|||||...+....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 89 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD--PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP---------- 89 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC--CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC--CccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence 467999999999999999999999876553222 222222222222 234667999999987654321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
...+..+|++++|+|+++..+ ...+..|+..+... ...+.|+++|+||+|+.............+....+. +++
T Consensus 90 --~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 164 (201)
T 3oes_A 90 --YSFIIGVHGYVLVYSVTSLHS--FQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFM 164 (201)
T ss_dssp --GGGTTTCCEEEEEEETTCHHH--HHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred --HHHHhcCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEE
Confidence 135678899999999965322 23455666665433 234678999999999976543333334444444455 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|.|++++|++|.+.+.+..
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987653
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=9e-23 Score=167.42 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|||||||+|+|.+.........+ .+.+.....+...+ ..+.+|||||...+.....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~----------- 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ----------- 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-----------
Confidence 478999999999999999999876544333222 22333333333343 4678999999875422110
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|+|+++..+. ..+..|+..+.... ..+.|+++|+||+|+........+....+....+. +++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIET 146 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred hhhhccCCEEEEEEECCChHHH--HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEe
Confidence 0124557999999999663222 23445555544322 23688999999999975444444445555555566 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|+++++++|.+.+..+
T Consensus 147 Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 147 SAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCccCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 50
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=6.6e-23 Score=175.79 Aligned_cols=166 Identities=17% Similarity=0.206 Sum_probs=112.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
...++|+++|.+|||||||+|+|++..... .....+.+...... ....+ ..+.+|||||...+.....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~-------- 79 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF-LDDQGNVIKFNVWDTAGQEKKAVLKD-------- 79 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE-EBTTSCEEEEEEEEECSGGGTSCCCH--------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE-EeCCCcEEEEEEEecCCchhhchHHH--------
Confidence 457899999999999999999999765432 23333333322221 11222 5689999999876543111
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..+..+|++++|+|++++.+.. .+..|+..+......+.|+++|+||+|+.............+....+. +++
T Consensus 80 ----~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 152 (218)
T 4djt_A 80 ----VYYIGASGAILFFDVTSRITCQ--NLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY-EYF 152 (218)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHH--THHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC-EEE
T ss_pred ----HHhhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-cEE
Confidence 2356789999999997643322 333455555433333578999999999987644444555666666665 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|.|+++++++|.+.+....
T Consensus 153 ~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 153 EISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp EEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred EEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999987753
No 51
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=4.5e-23 Score=169.38 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.++|+++|.+|||||||+|+|.+.... ++..+++|.......+...+..+.+|||||+..+.... ....+...+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHHH
Confidence 478999999999999999999986542 34456666655555555567889999999998654322 1112222222
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
....+|++++|+|+++ . .....++..+... +.|+++|+||+|+........ ....++...+. +++++||+
T Consensus 78 ~~~~~~~~i~v~D~~~----~-~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~~SA~ 147 (165)
T 2wji_A 78 INEKPDLVVNIVDATA----L-ERNLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGV-KVVPLSAA 147 (165)
T ss_dssp HHHCCSEEEEEEETTC----H-HHHHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBGG
T ss_pred hcCCCCEEEEEecCCc----h-hHhHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCC-CEEEEEcC
Confidence 2246899999999954 2 2233455554432 578999999999853221100 12223322343 69999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 020714 299 KGAGLKALTQYLMEQFK 315 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~ 315 (322)
+|.|+++++++|.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.1e-22 Score=172.72 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=111.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...+ ..+.+|||||...+. .
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------------~ 90 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR------------S 90 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH------------H
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH------------H
Confidence 457899999999999999999998776432 1122222222222333344 478999999976421 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
.....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+........+....+....+. ++++
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 167 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESF--RCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLE 167 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEE
T ss_pred HHHHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEE
Confidence 233557889999999999654322 2344566655544344688999999999975433222333344433444 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
|||++|.|+++++++|.+.+.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 168 TSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 53
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=2.1e-22 Score=170.52 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=103.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.+|||||||+|++.+..+....+..+.+. ..+..++..+.+|||||...+... .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~------------~ 86 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELTIAGMTFTTFDLGGHIQARRV------------W 86 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC----EEEEETTEEEEEEEECC----CCG------------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee----EEEEECCEEEEEEECCCcHhhHHH------------H
Confidence 456899999999999999999999887655444444432 234456788999999998754331 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---------
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--------- 286 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--------- 286 (322)
...+..+|++++|+|++++.+. .....++..+... ...+.|+++|+||+|+... ...++....+...
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERL--LESKEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCC
T ss_pred HHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccc
Confidence 1346788999999999764322 3344555554322 2346889999999999752 2222222222211
Q ss_pred ------CCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 287 ------PGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 287 ------~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
....++++|||++|.|+++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1223699999999999999999998754
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=4.2e-23 Score=174.72 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=103.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeee-eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|++..+. ......+.+.......+......+.||||||...+. .
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~------ 92 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR------S------ 92 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH------H------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh------h------
Confidence 345799999999999999999999987643 233333433332222222223568999999976431 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC------ChhHHHHHHHHHhcCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT------KKKDLLKVAEQFKHLPG 288 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~------~~~~~~~~~~~~~~~~~ 288 (322)
.....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.. ......+....+....+
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~ 170 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSF--LNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG 170 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred hHHHHHhhCCEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence 122345678999999999654322 2344555555443334678999999999962 12222233344444345
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 289 YERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
. +++++||++|.|+++++++|.+.+.+
T Consensus 171 ~-~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 171 A-LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp C-EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred C-eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 4 69999999999999999999998864
No 55
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=1.4e-22 Score=167.88 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=111.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++..+. ....+++...........+ ..+.+|||||...+... . .
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----~----~ 75 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM-----R----E 75 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-----H----H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-----H----H
Confidence 45789999999999999999999987543 2233344333333343444 46789999998755321 1 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..+..+|++++|+|+++..+. ..+..|+..+ ......+.|+++|+||+|+.............+....+. +++
T Consensus 76 ---~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 149 (181)
T 2fn4_A 76 ---QYMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYF 149 (181)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred ---HHHhhCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEE
Confidence 224567999999999653221 2344555444 222234678999999999976433323334444444455 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|.|+++++++|.+.+.+..
T Consensus 150 ~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 150 EASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 56
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=1.1e-22 Score=169.34 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=110.1
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
.....++|+++|.+|||||||+|+|.+....... ..++...........+. .+.+|||||...+....
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------- 83 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR-------- 83 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH--------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHH--------
Confidence 3456799999999999999999999976543222 22222222333334443 45679999987543211
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
...+..+|++++|+|++++.+. ..+..|+..+.. ....+.|+++|+||+|+........+....+....+. +
T Consensus 84 ----~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~ 156 (183)
T 3kkq_A 84 ----EQYMRTGDGFLIVYSVTDKASF--EHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-P 156 (183)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-C
T ss_pred ----HHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC-e
Confidence 1234568999999999764322 223344444422 2234678999999999976544434444455544454 6
Q ss_pred EEEeecC-CCCCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGL-KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~-~g~gi~el~~~i~~~l~~ 316 (322)
++++||+ +|.|++++|++|.+.+.+
T Consensus 157 ~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 157 YIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999 999999999999998865
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=3.8e-23 Score=171.13 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=108.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCC---ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
...++|+++|.+|||||||+|+|.+..+.. ..+..+ .+.....+...+ ..+.+|||||...+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--------- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCCTTCTT---------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCccccch---------
Confidence 457899999999999999999999876432 112222 222222233333 67899999998754321
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCc-EEEEEeCCCCCCChhHHHHHHHHHhcCCCC
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQK-RVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p-~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 289 (322)
....+..+|++++|+|++++.+. ..+..|+..+.... ....| +++|+||+|+........+....+....+.
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSF--ENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF 147 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC
Confidence 11235788999999999764322 22334444443210 01334 899999999975433222333344443444
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+++++||++|.|+++++++|.+.+.+..+
T Consensus 148 -~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 148 -SSHFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp -EEEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred -cEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 69999999999999999999999987654
No 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.89 E-value=5.6e-23 Score=168.23 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=107.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+... ...+.+|||||...+....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY-KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT----------- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS-SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH-----------
Confidence 5789999999999999999999987643221 1222222222223233 3478999999987653311
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|+|+++..+. ..+..|+..+.... ++.|+++|+||+|+........+....+....+. +++++
T Consensus 72 -~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (168)
T 1z2a_A 72 -KAYYRGAQACVLVFSTTDRESF--EAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRT 146 (168)
T ss_dssp -HHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEC
T ss_pred -HHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEE
Confidence 1235678999999999653222 23334554443322 3578999999999976433222333344443454 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|+++++++|.+.+.+
T Consensus 147 Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 147 SVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp BTTTTBSSHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988764
No 59
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=4.7e-22 Score=183.54 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=114.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
.|+++|++|||||||+|+|++... .+...+++|.+.....+...+..+.+|||||+....+ ....+.+..++..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp----~~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP----PQIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCC----GGGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC----HHHHHHHHHHHHHH
Confidence 499999999999999999998875 4566778888777766777788899999999865322 33344577888889
Q ss_pred ccccEEEEEEeCCCCCCCcHH---HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-HHHHHHHH-hcC-CCCCcEEE
Q 020714 221 NLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LLKVAEQF-KHL-PGYERIFM 294 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~---~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-~~~~~~~~-~~~-~~~~~~~~ 294 (322)
..+|++++|+|+++..+.... .+..++..++. .+.|+++|+||+|+...... .......+ ... ....++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGV---SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC---CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc---CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999764211112 23445555543 35789999999999765311 11112111 111 11235899
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcCCcC
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDLGLKI 321 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~~~~~ 321 (322)
+||++|.|+++++++|.+.+......+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~~~~ 359 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLSLEH 359 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC---
T ss_pred EECCCCcCHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999998876655
No 60
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=3.9e-22 Score=167.70 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+.++|+++|.+|||||||+|++.+..+....+..+.+ ...+..++..+.+|||||+..+... ..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~------------~~ 85 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHIQARRL------------WK 85 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSGGGTTS------------GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCHHHHHH------------HH
Confidence 4679999999999999999999987765444444332 3334466789999999999765331 12
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC----------
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------- 286 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---------- 286 (322)
..+..+|++++|+|++++.+. .....++..+.. ....+.|+++|+||+|+... ...++..+.+...
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERF--DEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCS
T ss_pred HHHhcCCEEEEEEECCChHHH--HHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccc
Confidence 346788999999999764332 334455555432 22346889999999999763 2222323332211
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
....++++|||++|.|+++++++|.+.
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 122369999999999999999999864
No 61
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.89 E-value=4.4e-22 Score=167.80 Aligned_cols=165 Identities=20% Similarity=0.233 Sum_probs=109.6
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeee--cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
.....++|+++|.+|||||||+|+|++..+..+ .+..+. ....+...+..+.+|||||+..+..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 78 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY----NVETFEKGRVAFTVFDMGGAKKFRG---------- 78 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE----EEEEEEETTEEEEEEEECCSGGGGG----------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce----eEEEEEeCCEEEEEEECCCCHhHHH----------
Confidence 445678999999999999999999999876653 333332 2223446678899999999875422
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc--------CCCCCcEEEEEeCCCCCCChh---HHHHHHH
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKK---DLLKVAE 281 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~--------~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~ 281 (322)
.....+..+|++|+|+|+++..+. ..+..++..+... ...+.|+++|+||+|+..... .......
T Consensus 79 --~~~~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 154 (199)
T 4bas_A 79 --LWETYYDNIDAVIFVVDSSDHLRL--CVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDL 154 (199)
T ss_dssp --GGGGGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTH
T ss_pred --HHHHHHhcCCEEEEEEECCcHHHH--HHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcc
Confidence 111346889999999999764332 2344454444322 012578999999999987522 1111111
Q ss_pred -HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 282 -QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 282 -~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
.+....+. ++++|||++|.||++++++|.+.+.+..
T Consensus 155 ~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 155 TTLMGDHPF-VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHHTTSCE-EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred hhhccCCee-EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 11133444 6999999999999999999999987653
No 62
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=9.6e-23 Score=171.60 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=112.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|++.+..+.. ....++...........+ ..+.+|||||...+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 87 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPT--AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL---------- 87 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----------
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCC--ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH----------
Confidence 3467999999999999999999999876432 222233232222333343 35699999998755321
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC--hhHHHHHHHHHhcCCCCCc
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 291 (322)
....+..+|++++|+|+++..+... ....|+..+... .++.|+++|+||+|+... .....+....+....+...
T Consensus 88 --~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 88 --RPLSYADSDVVLLCFAVNNRTSFDN-ISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHHHH-HHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred --hHhhccCCcEEEEEEECCCHHHHHH-HHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 1235678999999999976432222 113344444422 346889999999999753 2233344445555556656
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++++||++|.|+++++++|.+.+..+.
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987754
No 63
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.88 E-value=2.8e-22 Score=167.88 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=109.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC-----------CccEEEEeCCCcccCCCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA-----------DTQICIFDTPGLMLNKSG 203 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~ 203 (322)
....++|+++|.+|||||||+|+|.+..+... ....+.+... ....... ...+.+|||||+..+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-- 84 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFRE-KRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR-- 84 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH--
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeee-EEEEEecCCcccccccCcEEEEEEEeCCCcHHHH--
Confidence 34578999999999999999999997664321 1222221110 1222233 2478999999986421
Q ss_pred CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChhHHHHHHHH
Q 020714 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQ 282 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~ 282 (322)
......+..+|++++|+|++++.+. ..+..++..+..... .+.|+++|+||+|+........+....
T Consensus 85 ----------~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 85 ----------SLTTAFFRDAMGFLLLFDLTNEQSF--LNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp ----------HHHHHTTTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ----------HHHHHHHcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 1223457889999999999654322 234455555543222 467899999999997543322233334
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+....+. +++++||++|.|+++++++|.+.+.++
T Consensus 153 ~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 153 LAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4433444 699999999999999999999988654
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.88 E-value=2.2e-22 Score=166.35 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=107.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|++.+...... ..+..+.......+...+ ..+.+|||||...+. .
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~ 71 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR------------S 71 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH------------H
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh------------h
Confidence 3568999999999999999999997764321 122222222222233344 478999999976421 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc----cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc-CCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY 289 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~----~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~-~~~~ 289 (322)
.....+..+|++++|+|+++..+. ..+..|+..+.. ....+.|+++|+||+|+....... +....+.. ..+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~~~~~- 147 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSF--QNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST-EEAQAWCRDNGD- 147 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH-HHHHHHHHHTTC-
T ss_pred hHHHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCH-HHHHHHHHhcCC-
Confidence 223457889999999999754322 223344444332 122467899999999997432222 23333433 333
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.+++++||++|.|+++++++|.+.+.+.
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3699999999999999999999988753
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.88 E-value=2e-22 Score=168.26 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=107.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|+|.+..... ...+++...........+. .+.+|||||...+... . .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~---~- 70 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM------R---D- 70 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCC--CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT------H---H-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH------H---H-
Confidence 46899999999999999999999776432 2233333333333334444 4678999998754321 1 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|+|+++..+. ..+..++..+.. ....+.|+++|+||+|+..... ..+....+....+. ++++
T Consensus 71 --~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~ 144 (189)
T 4dsu_A 71 --QYMRTGEGFLCVFAINNTKSF--EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV-DTKQAQDLARSYGI-PFIE 144 (189)
T ss_dssp --HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSS-CHHHHHHHHHHHTC-CEEE
T ss_pred --HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECccCccccc-CHHHHHHHHHHcCC-eEEE
Confidence 234567999999999653222 234445444433 2334688999999999975432 22233344443444 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+..+
T Consensus 145 ~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 145 TSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=6.4e-23 Score=168.37 Aligned_cols=164 Identities=18% Similarity=0.125 Sum_probs=103.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
..++|+++|.+|||||||+|+|.+...... .+..+.+ ........ ...+.+|||||...+. ..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~~~Dt~G~~~~~------~~----- 67 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT---YRQVISCDKSICTLQITDTTGSHQFP------AM----- 67 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE---EEEEEEETTEEEEEEEEECCSCSSCH------HH-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccc---EEEEEEECCEEEEEEEEECCCchhhH------HH-----
Confidence 358999999999999999999998764321 1111211 11112222 3468999999986431 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|+++..+... ..+...+..... ..++.|+++|+||+|+.............+....+. +++
T Consensus 68 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 144 (172)
T 2erx_A 68 -QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFM 144 (172)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred -HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEE
Confidence 1123456899999999975422211 122222333321 224678999999999975433222233333333344 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|.|+++++++|.+.+..++
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 169 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLEKRRT 169 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCCSSC
T ss_pred EecCCCCcCHHHHHHHHHHHHhhhh
Confidence 9999999999999999999887654
No 67
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=6.1e-22 Score=165.16 Aligned_cols=161 Identities=15% Similarity=0.212 Sum_probs=109.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||+|++.+.......+..|.+.. .+...+..+.+|||||...+. ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~~~~~l~i~Dt~G~~~~~------------~~~ 77 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKIR------------PYW 77 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSCGGGH------------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEECCEEEEEEECCCCHHHH------------HHH
Confidence 4679999999999999999999998876555555553322 233457889999999986431 112
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 291 (322)
...+..+|++++|+|+++..+. .....++..+.. ....+.|+++|+||+|+..... .++....+. ...+. +
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~ 153 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVW-Q 153 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-E
T ss_pred HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCce-E
Confidence 2346789999999999764322 334455555432 2234688999999999976532 222222221 11222 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++|||++|.|+++++++|.+.+.++
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 154 IQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTC---
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999988654
No 68
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=2.6e-22 Score=180.98 Aligned_cols=168 Identities=28% Similarity=0.435 Sum_probs=125.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcc-cCCCCCChhhHH-HHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVK-VRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~-~~~~~ 215 (322)
+..+|+++|.||||||||+|+|++..+..++..+++|+....+.+...+..+.++||||+. .+. .... .....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHHH
Confidence 4557999999999999999999999887778888899887777777778899999999986 211 1111 11222
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
+...+..+|++++|+|+++ .+..+..+. +.+.. .+.|+++|+||+|+.............+.+..++..++++
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~---~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVL---NKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHH---HHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHH---HHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 3456788999999999966 443333332 22322 2468999999999987445555666667766666679999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc
Q 020714 296 SGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~~ 317 (322)
||++|.|+++++++|.+.+.+.
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBC
T ss_pred ECCCCCCHHHHHHHHHHhCCcC
Confidence 9999999999999999877653
No 69
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=169.72 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=111.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|.+..... ...++++.+.....+..++ ..+.+|||||...+. .. +
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----~~----~ 89 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-----GW----L 89 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-----HH----H
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch-----hh----h
Confidence 3457899999999999999999998654322 2223344333333333444 467899999986431 11 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.. ..+..+|++++|||+++..+. ..+..|+..+.... ..+.|+++|+||+|+...+....+....++...+. ++
T Consensus 90 ~~--~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~ 164 (195)
T 3cbq_A 90 RD--HCLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KH 164 (195)
T ss_dssp HH--HHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EE
T ss_pred HH--HhhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EE
Confidence 11 234678999999999653322 23445665554322 23688999999999976543333334445554555 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
+++||++|.|++++|++|.+.+...+-
T Consensus 165 ~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 165 IETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876543
No 70
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=1.2e-22 Score=193.66 Aligned_cols=162 Identities=22% Similarity=0.381 Sum_probs=121.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcc-cCCCCCChhhHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~~~ 216 (322)
.+++|+++|.||||||||+|+|++.+...+...+++|++.....+...+..+.+|||||+. .+...... .++..+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~----~gi~~~ 317 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER----LGIERT 317 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCC----CCHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHH----HHHHHH
Confidence 4689999999999999999999998777788899999988777777788999999999997 54322111 123455
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
+..+..+|++|+|+|++++.+..+..+ ++.+ .++|+++|+||+|+.... ..++. ..+.. .+ .++++||
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~i---l~~l-----~~~piivV~NK~DL~~~~-~~~~~-~~~~~-~~-~~~i~iS 385 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKI---LERI-----KNKRYLVVINKVDVVEKI-NEEEI-KNKLG-TD-RHMVKIS 385 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHH---HHHH-----TTSSEEEEEEECSSCCCC-CHHHH-HHHHT-CS-TTEEEEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHH---HHHh-----cCCCEEEEEECccccccc-CHHHH-HHHhc-CC-CcEEEEE
Confidence 567788999999999987655433332 2333 256899999999997541 22222 22222 12 3699999
Q ss_pred cCCCCCHHHHHHHHHHHhh
Q 020714 297 GLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~ 315 (322)
|++|.|+++++++|.+.+.
T Consensus 386 Aktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 386 ALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGGTCCHHHHHHHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999765
No 71
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=4.8e-22 Score=165.54 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=109.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..+.++|+++|.+|||||||+|+|.+..+....+..+.+... +...+..+.+|||||...+...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~------------ 81 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQESLRSS------------ 81 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE----EEETTEEEEEEEESSSGGGTCG------------
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE----EEECCEEEEEEECCCCHhHHHH------------
Confidence 446799999999999999999999988776666666644322 2346788999999999754331
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYE 290 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~ 290 (322)
....+..+|++++|+|+++..+. .....++..+... ...+.|+++|+||+|+..... ..+....+. ...+.
T Consensus 82 ~~~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~- 157 (181)
T 2h17_A 82 WNTYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW- 157 (181)
T ss_dssp GGGGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-
T ss_pred HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCce-
Confidence 12456888999999999775333 3344555544322 134688999999999976421 222222221 11222
Q ss_pred cEEEeecCCCCCHHHHHHHHHHH
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
+++++||++|.|+++++++|.+.
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHTC
T ss_pred EEEEccCCCCcCHHHHHHHHHhh
Confidence 68999999999999999999764
No 72
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=172.08 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=107.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|++..+.... .+..+.......+...+ ..+.||||||...+...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---------- 90 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV---------- 90 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH----------
Confidence 356799999999999999999999987654322 12222222222233344 57899999997644321
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|+++..+. ..+..|+..+.....++.|+++|+||+|+.............+....+. +++
T Consensus 91 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 165 (200)
T 2o52_A 91 --TRSYYRGAAGALLVYDITSRETY--NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFL 165 (200)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred --HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEE
Confidence 11345778999999999654322 2344566655544345788999999999965433222233344444454 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+|||++|.|+++++++|.+.+.++
T Consensus 166 ~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 166 ETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp EECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888653
No 73
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-21 Score=164.18 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=108.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.+|||||||+|+|.+.......+..+.+.. .+...+..+.+|||||...+... .
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~------------~ 77 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSS------------W 77 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEEETTEEEEEEECCC----CGG------------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE----EEEECCEEEEEEECCCCHhHHHH------------H
Confidence 4579999999999999999999997766555444443322 23346788999999998654220 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 291 (322)
...+..+|++++|+|++++.+. .....++..+... ...+.|+++|+||+|+..... .++....+. ...+. +
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~-~ 153 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQW-H 153 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE-E
T ss_pred HHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCc-E
Confidence 1235788999999999775433 3344555555432 124688999999999976422 222222222 12233 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++++||++|.|+++++++|.+.+....
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 899999999999999999999886643
No 74
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=2.4e-23 Score=185.34 Aligned_cols=168 Identities=17% Similarity=0.282 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.++|+++|.+|||||||+|+|++.. ..++..+|+|.+.....+...+..+.+|||||+..+..........+.+.+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5789999999999999999999987 467788899988888777777889999999999876532222223334455555
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
....+|++++|+|+++. +....+..++... +.|+++|+||+|+...... ......+....++ +++++||+
T Consensus 82 ~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~-~~i~~SA~ 151 (274)
T 3i8s_A 82 LSGDADLLINVVDASNL--ERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNI-RIEIDALSARLGC-PVIPLVST 151 (274)
T ss_dssp HHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTE-EECHHHHHHHHTS-CEEECCCG
T ss_pred hhcCCCEEEEEecCCCh--HHHHHHHHHHHhc------CCCEEEEEECccchhhhhH-HHHHHHHHHhcCC-CEEEEEcC
Confidence 56889999999999651 1112233333333 4679999999998643210 0011223333344 69999999
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q 020714 299 KGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~~ 317 (322)
+|.|+++++++|.+.+...
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999887643
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=5.9e-22 Score=167.13 Aligned_cols=162 Identities=20% Similarity=0.184 Sum_probs=106.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC------------------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD------------------------------ 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------ 186 (322)
...++|+++|.+|||||||+|+|++..+.. ...+.+........+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 357899999999999999999999876442 1111111122222222222
Q ss_pred ---------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCC
Q 020714 187 ---------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257 (322)
Q Consensus 187 ---------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~ 257 (322)
..+.||||||...+.. .....+..+|++++|+|++++.+. ..+..|+..+.... +
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~--~ 147 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYAS------------IVPLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISS--N 147 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTT------------THHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHS--C
T ss_pred ccccCccceeEEEEEECCCcHHHHH------------HHHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhC--C
Confidence 6789999999875432 112345788999999999654322 23445666555332 2
Q ss_pred CcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 258 ~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.|+++|+||+|+ .......+....+....+. +++++||++|.|+++++++|.+.+.++
T Consensus 148 ~piilv~NK~D~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 148 YIIILVANKIDK-NKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CEEEEEEECTTC-C-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCc-ccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 789999999994 3222222223333333455 699999999999999999999988764
No 76
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=173.00 Aligned_cols=167 Identities=17% Similarity=0.097 Sum_probs=99.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|+|.+..+.... ..++...........+ ..+.+|||||...+...
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---------- 98 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESY--TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL---------- 98 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEECCEEEEEEEEECCCchhhhHH----------
Confidence 346799999999999999999999987654322 1222222222223333 36899999998654221
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHH
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA 280 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~ 280 (322)
....+..+|++++|+|+++..+. ..+. .|+..+... .++.|+++|+||+|+...... .....
T Consensus 99 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 99 --RPLFYPDASVLLLCFDVTSPNSF--DNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp --------CEEEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred --HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 11246788999999999654222 2222 355554432 246789999999999865321 11223
Q ss_pred HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
..+....+..++++|||++|.|+++++++|.+.+.+...
T Consensus 174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 445444565579999999999999999999999887643
No 77
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=2.2e-22 Score=177.50 Aligned_cols=163 Identities=23% Similarity=0.318 Sum_probs=116.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+.++|+++|.+|||||||+|+|++.... ++..+|+|.......+...+..+.+|||||+..+..... .+.+.+.+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI----DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH----HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH----HHHHHHHH
Confidence 4689999999999999999999997754 667788998877777777788999999999986644221 11222222
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
-....+|++++|+|+++. +. ...+...+... +.|+++|+||+|+........ ....+....++ +++++||
T Consensus 79 ~~~~~~d~ii~V~D~t~~----~~-~~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~-~vi~~SA 148 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNP----EQ-SLYLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGI-PVVFTSS 148 (258)
T ss_dssp HHHSCCSEEEEEEETTSC----HH-HHHHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCS-CEEECCT
T ss_pred HhhcCCCEEEEEeCCCch----hh-HHHHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCC-CEEEEEe
Confidence 223678999999999652 22 22344444433 578999999999864322111 12333333455 6999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 020714 298 LKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~ 315 (322)
++|.|+++++++|.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999999875
No 78
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.88 E-value=2.5e-22 Score=167.19 Aligned_cols=165 Identities=17% Similarity=0.094 Sum_probs=109.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+.. ...+++.......+...+ ..+.+|||||...+. ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~----- 82 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------AI----- 82 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------HH-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC--cCCCccceEEEEEEEECCEEEEEEEEECCCCcccH------HH-----
Confidence 357899999999999999999999876432 222333333332233343 478999999976431 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+.............+....+. +++
T Consensus 83 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 158 (187)
T 2a9k_A 83 -RDNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYV 158 (187)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred -HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEE
Confidence 11235678999999999653221 2344444444322 223678999999999976433222333344444455 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++||++|.|+++++++|.+.+.+++
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 159 ETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=1.3e-22 Score=172.56 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=108.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||++++++..... ...+++...........+. .+.+|||||+..+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL----------- 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCC--CcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-----------
Confidence 457999999999999999999999765432 2233333333333344444 4559999999755321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE 281 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~ 281 (322)
....+..+|++++|+|+++..+.. .+. .|+..+.... ++.|+++|+||+|+...... ......
T Consensus 95 -~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 95 -RPLSYPQTDVFLICFSLVSPASFE--NVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred -HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 113567899999999997643322 222 3444444332 46789999999999775431 122334
Q ss_pred HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.+....+..++++|||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 455556666799999999999999999998865
No 80
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=8.7e-23 Score=168.82 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=107.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|+|++..+.... .+..+.+.....+...+ ..+.+|||||...+...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------ 79 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------ 79 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH------------
Confidence 4589999999999999999999976654322 23333333333333344 47899999997654221
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
....+..+|++++|+|++++.+. ..+..|+..+......+.|+++|+||+|+.............+....+. +++++
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTNSF--HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIET 156 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEE
T ss_pred HHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEEE
Confidence 11235678999999999653221 2344555555433334678999999999975433222222333333344 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|+++++++|.+.+.+
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988764
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=3.6e-22 Score=170.24 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=109.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...+ ..+.+|||||...+...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI----------- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-----------
Confidence 457899999999999999999999776532 2223333333333333444 57899999998765331
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
....+..+|++++|+|+++..+. ..+..|+..+......+.|+++|+||+|+.... ........+....+. ++++
T Consensus 86 -~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~ 160 (213)
T 3cph_A 86 -TTAYYRGAMGIILVYDVTDERTF--TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGI-PFIE 160 (213)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHHHHHHHHHHTC-CEEE
T ss_pred -HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHHHHHHHHHcCC-EEEE
Confidence 11345778999999999653322 233455555544333467899999999994332 222223333333444 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+||++|.|+++++++|.+.+.+
T Consensus 161 ~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 161 SSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CBTTTTBSSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.8e-22 Score=174.00 Aligned_cols=165 Identities=14% Similarity=0.122 Sum_probs=109.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+|+|.+|||||||+|+|.+..+..... +..+.......+...+ ..+.||||||...+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 79 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT---------- 79 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCccchhhhH----------
Confidence 457899999999999999999999876543222 2222222222233344 578999999987654321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
...+..+|++|+|+|++++.+. ..+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus 80 --~~~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 154 (223)
T 3cpj_B 80 --SAYYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTE 154 (223)
T ss_dssp --GGGTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred --HHHhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 1346788999999999664322 2345566666544345688999999999975433223334444444454 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.||++++++|.+.+.+.
T Consensus 155 ~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 155 TSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCCC-CCCHHHHHHHHHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=9.3e-23 Score=171.39 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=109.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-------CCceeeeEEEE--E-ee--CCccEEEEeCCCcccCCCCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-------TNTTTHEVLGV--M-TK--ADTQICIFDTPGLMLNKSGY 204 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-------~~~t~~~~~~~--~-~~--~~~~~~l~DtpG~~~~~~~~ 204 (322)
...++|+++|.+|||||||++.+.+......... ...|....... . .. ....+.+|||||...+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-- 89 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA-- 89 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH--
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH--
Confidence 4578999999999999999988876543221110 11111111100 0 11 134689999999875421
Q ss_pred ChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH----HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHH
Q 020714 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD----SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA 280 (322)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~----~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~ 280 (322)
. ....+..+|++++|+|++++..... ..+..|+..+. ....+.|+++|+||+|+... ...+..
T Consensus 90 ----~------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~ 156 (198)
T 3t1o_A 90 ----S------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMV 156 (198)
T ss_dssp ----H------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHH
T ss_pred ----H------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHH
Confidence 1 1135688999999999974322111 23445666663 23457899999999999764 223334
Q ss_pred HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
..+....+..+++++||++|.|+++++++|.+.+.++
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 5566666664699999999999999999999988765
No 84
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.88 E-value=1.6e-22 Score=168.41 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+++|.+..+... ...++...........+ ..+.+|||||+..+...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 69 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL------------ 69 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSS--CCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCC--cCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH------------
Confidence 568999999999999999999987654321 12222222222222333 45679999999754321
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHHH
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAEQ 282 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~~ 282 (322)
....+..+|++++|+|++++.+.. ... .|+..+... .++.|+++|+||+|+...... ..+....
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSPASFE--NVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHhccCCcEEEEEEECCChhhHH--HHHHHHHHHHHHh-CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 113467899999999996543222 222 344444332 126789999999999764321 1122334
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+....+..+++++||++|.|+++++++|.+.+....
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 444455557999999999999999999999987654
No 85
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=169.29 Aligned_cols=165 Identities=17% Similarity=0.098 Sum_probs=109.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+|+|.+|||||||+|+|.+..+.. ...+++.......+...+ ..+.+|||||...+. ..
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~---- 78 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------AI---- 78 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH------HH----
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH------HH----
Confidence 3457899999999999999999999776432 223333333323333344 378899999976431 11
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
....+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+........+....+....+. ++
T Consensus 79 --~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
T 2bov_A 79 --RDNYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NY 153 (206)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EE
T ss_pred --HHHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eE
Confidence 11235668999999999653221 2344555554432 223678999999999976433222233333333444 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++|.|+++++++|.+.+...
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999988653
No 86
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.88 E-value=6e-22 Score=168.09 Aligned_cols=164 Identities=21% Similarity=0.153 Sum_probs=108.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++..+... ..+..+.+.....+...+ ..+.+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 74 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG---------- 74 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----------
Confidence 4578999999999999999999998765422 122222333333333333 478999999987654322
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc-CCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY 289 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~----~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~-~~~~ 289 (322)
...+..+|++++|+|++++.+. ..+..|+..+... ...+.|+++|+||+|+....... .....+.. ..+.
T Consensus 75 --~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (207)
T 1vg8_A 75 --VAFYRGADCCVLVFDVTAPNTF--KTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVAT-KRAQAWCYSKNNI 149 (207)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCH-HHHHHHHHHTTSC
T ss_pred --HHHHhCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCH-HHHHHHHHhcCCc
Confidence 1346788999999999654322 2233444433221 12357899999999997432222 23333433 3444
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++++||++|.|+++++++|.+.+.+.
T Consensus 150 -~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 150 -PYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp -CEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 699999999999999999999988653
No 87
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=2.6e-22 Score=166.41 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=103.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
...++|+++|.+|||||||+|+|++..+.... .+..+.+.....+... ...+.+|||||...+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 73 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY-KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS----------- 73 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCccc-CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-----------
Confidence 45789999999999999999999987643211 1222222222223332 34789999999764321
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc----cCCCCCcEEEEEeCCCCCCCh-hHHHHHHHHHhcCCC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPG 288 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~----~~~~~~p~ivV~NK~Dl~~~~-~~~~~~~~~~~~~~~ 288 (322)
.....+..+|++++|+|+++..+. ..+..|+..+.. ....+.|+++|+||+|+.... .........+.....
T Consensus 74 -~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 74 -LGVAFYRGADCCVLVYDVTNASSF--ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG 150 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred -hhHHHhhcCCEEEEEEECCChHHH--HHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC
Confidence 122456889999999999664322 223344444332 122468899999999996432 122233344444223
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 289 YERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
..+++++||++|.|+++++++|.+.+.++
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 151 DIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp SCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 34699999999999999999999988765
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.88 E-value=5.4e-22 Score=167.13 Aligned_cols=161 Identities=12% Similarity=0.147 Sum_probs=106.2
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..+.++|+++|.+|||||||+|++.+..+....++.+ .....+...+..+.+|||||...+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 89 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNICFTVWDVGGQDKIRPL------------ 89 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT----EEEEEEEETTEEEEEEECC-----CTT------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc----eeEEEEEECCEEEEEEECCCCHhHHHH------------
Confidence 3467999999999999999999998876654322222 222334456788999999998754321
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYE 290 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~ 290 (322)
....+..+|++++|+|++++.+. .....++..+.. ....+.|+++|+||+|+..... ..+....+. ...+.
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~- 165 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTW- 165 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCE-
T ss_pred HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCce-
Confidence 11235678999999999764322 334455555432 2234688999999999976421 222222222 11222
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
++++|||++|.|+++++++|.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 58999999999999999999998764
No 89
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=9.2e-23 Score=193.58 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=113.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
..+++|+++|.||||||||+|+|++.....+...+++|++.....+..++..+.+|||||+..+.. .....++.++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~----~ve~~gi~~~ 297 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD----QVEKIGVERS 297 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh----HHHHHHHHHH
Confidence 457899999999999999999999987777788889988866555667888999999999975422 1122345677
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEee
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (322)
+..+..+|++++|+|++++.+..+. .++..+. ..|+++|+||+|+....... .........+++++|
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~---~i~~~l~-----~~piivV~NK~Dl~~~~~~~-----~~~~~~~~~~~i~iS 364 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQ---EIYEQVK-----HRPLILVMNKIDLVEKQLIT-----SLEYPENITQIVHTA 364 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHH---HHHHHHT-----TSCEEEEEECTTSSCGGGST-----TCCCCTTCCCEEEEB
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHH---HHHHhcc-----CCcEEEEEECCCCCcchhhH-----HHHHhccCCcEEEEE
Confidence 7888999999999999876554442 3444443 25799999999998653321 112222334799999
Q ss_pred cCCCCCHHHHHHHHHHHhhhcC
Q 020714 297 GLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 297 a~~g~gi~el~~~i~~~l~~~~ 318 (322)
|++|.|+++++++|.+.+....
T Consensus 365 Aktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 365 AAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999887543
No 90
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=5.3e-22 Score=166.63 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=111.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|++..+.. ..+..+.+.......+......+.||||||...+...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 3457899999999999999999999876542 2222333332222222222457899999998754321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC-CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|++++.+. ..+..|+..+.... ..+.|+++|+||+|+...... .+....+....+. +++
T Consensus 81 -~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~ 155 (195)
T 1x3s_A 81 -TPSYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD-RNEGLKFARKHSM-LFI 155 (195)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC-HHHHHHHHHHTTC-EEE
T ss_pred -hHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC-HHHHHHHHHHcCC-EEE
Confidence 11345778999999999653222 23456666665432 246899999999999543222 2223334433454 599
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++||++|.|+++++++|.+.+.+.
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EecCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 91
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=5.5e-22 Score=188.01 Aligned_cols=165 Identities=19% Similarity=0.277 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
.+|+++|.||||||||+|+|++.+.+.+...+|+|++.........+..+.+|||||+.......- .......+...
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~---~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII---SQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC---CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchH---HHHHHHHHHHH
Confidence 469999999999999999999988777888999999888777777888999999999975321111 11223344566
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..+|++++|+|+..+.+..+..+..++... ++|+++|+||+|+... ........+.. .++.+++++||++
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~~-lg~~~~~~iSA~~ 149 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELYS-LGFGEPIPVSAEH 149 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHGG-GSSCSCEECBTTT
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHHh-cCCCCEEEEeccC
Confidence 7899999999999877666666666666653 4679999999998532 11111133433 3554689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 020714 300 GAGLKALTQYLMEQFKD 316 (322)
Q Consensus 300 g~gi~el~~~i~~~l~~ 316 (322)
|.|+++++++|.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999998864
No 92
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.88 E-value=2.6e-22 Score=171.90 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=110.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC------------CccEEEEeCCCcccCCCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------DTQICIFDTPGLMLNKSG 203 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~l~DtpG~~~~~~~ 203 (322)
....++|+++|.+|||||||+|+|++..+.... .+..+.+.....+... ...+.||||||...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--- 97 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKF-ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF--- 97 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEE-EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH---
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCC-CCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH---
Confidence 456799999999999999999999987543111 1111111111111112 357899999996531
Q ss_pred CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEeCCCCCCChhHHHHHHHH
Q 020714 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQ 282 (322)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~ 282 (322)
.......+..+|++++|+|+++..+ ...+..|+..+..... .+.|+++|+||+|+.............
T Consensus 98 ---------~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~ 166 (217)
T 2f7s_A 98 ---------RSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE 166 (217)
T ss_dssp ---------HHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ---------HhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence 1122345678899999999965322 2345567776654432 568999999999997643333333444
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+....+. ++++|||++|.|+++++++|.+.+.+
T Consensus 167 ~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 167 LADKYGI-PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHCCC-cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5544555 59999999999999999999998765
No 93
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=8.6e-22 Score=165.08 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=107.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|.+..+.. ..+..+.+ ...+...+..+.+|||||...+..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~Dt~G~~~~~~------------ 82 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN----MRKITKGNVTIKLWDIGGQPRFRS------------ 82 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE----EEEEEETTEEEEEEEECCSHHHHT------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee----EEEEEeCCEEEEEEECCCCHhHHH------------
Confidence 3457999999999999999999999776542 22222222 223445678899999999764211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhc---CCCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYE 290 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~ 290 (322)
.....+..+|++++|+|+++..+ ...+..++..+... ...+.|+++|+||+|+..... ..+....+.. .....
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEK--IEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREI 159 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHccCCEEEEEEECCCHHH--HHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCe
Confidence 11133578899999999976432 23344555554322 224688999999999976422 2222222211 11223
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++++|||++|.|+++++++|.+.+..+
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 689999999999999999999988654
No 94
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=2.3e-22 Score=172.37 Aligned_cols=165 Identities=12% Similarity=0.113 Sum_probs=110.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee--CCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++..+.... ..++.......... ....+.+|||||...+....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---------- 92 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR---------- 92 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTG----------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHH----------
Confidence 45799999999999999999999987654221 11222222222222 23578899999987653311
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC------------hhHHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQ 282 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~------------~~~~~~~~~~ 282 (322)
...+..+|++|+|||+++..+... .+..|+..+... .++.|+++|+||+|+... +....+....
T Consensus 93 --~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 93 --PLCYSDSDAVLLCFDISRPETVDS-ALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp --GGGCTTCSEEEEEEETTCTHHHHH-HHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred --HHHcCCCeEEEEEEECcCHHHHHH-HHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 135678999999999976432222 134455555433 246899999999999753 1223334455
Q ss_pred HhcCCCCCcEEEeecCCCCC-HHHHHHHHHHHhhhc
Q 020714 283 FKHLPGYERIFMTSGLKGAG-LKALTQYLMEQFKDL 317 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l~~~ 317 (322)
++...+..++++|||++|.| |+++|++|.+.+...
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 55555665799999999998 999999999988764
No 95
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=1.9e-21 Score=162.29 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=110.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||+|++.+.......+..+ .....+...+..+.+|||||+..+.. ..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 79 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRS------------YW 79 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSHHHHT------------TG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCHhHHH------------HH
Confidence 467999999999999999999999877333333223 22223445678899999999864221 12
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc-cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHh----cCCCCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~-~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 291 (322)
...+..+|++++|+|++++.+. .....++..+.. ....+.|+++|+||+|+..... ..+....+. ...+. +
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~ 155 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHW-R 155 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE-E
T ss_pred HHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCce-E
Confidence 2456889999999999764332 334445554432 2234689999999999976532 222223322 12233 6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++++||++|.|+++++++|.+.+.++
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 96
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=167.92 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=107.1
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|++.+..+. ....+++.......+...+ ..+.+|||||...+....
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 85 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR--------- 85 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh---------
Confidence 346789999999999999999999987643 2223334333333343444 356799999997654311
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHH
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVA 280 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~ 280 (322)
...+..+|++++|+|+++..+.. .+. .|+..+... .++.|+++|+||+|+.... ....+..
T Consensus 86 ---~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 86 ---PLCYTNTDIFLLCFSVVSPSSFQ--NVSEKWVPEIRCH-CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred ---HhhcCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 13467889999999996543222 232 355444432 2367899999999997532 1122233
Q ss_pred HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
..+....+..++++|||++|.|+++++++|.+.+...
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 4444444554799999999999999999999988765
No 97
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1e-21 Score=168.14 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=106.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|++.+.........+.++.+.....+...+. .+.+|||+|.... ...+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~ 105 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH 105 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHH
Confidence 456899999999999999999999754322222222222222222334443 5678999996520 11111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
...+..+|++++|||+++..+. ..+..|...+... ...+.|+++|+||+|+...+.........++..++. +++
T Consensus 106 --~~~~~~a~~~ilVydvt~~~sf--~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~ 180 (211)
T 2g3y_A 106 --DHCMQVGDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFI 180 (211)
T ss_dssp --HCCCCCCSEEEEEEETTCHHHH--HHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred --HHHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEE
Confidence 2346788999999999654322 2333454444322 224688999999999975433222333344433444 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+|||++|.||+++|++|.+.+...
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988654
No 98
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=5.4e-22 Score=166.21 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=105.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..... ...+++.......+...+ ..+.+|||||...+..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 84 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------------ 84 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH------------
Confidence 456899999999999999999999775432 222333333323333333 4588999999764321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
.....+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+...... .+....+....+. +++
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~ 160 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSF--ADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVD-TKQAHELAKSYGI-PFI 160 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC-HHHHHHHHHHHTC-CEE
T ss_pred HHHHhhCcCCEEEEEEECcCHHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCC-HHHHHHHHHHcCC-eEE
Confidence 112346788999999999654322 2334444444322 1235789999999999763222 2223333333455 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhcCC
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~~~ 319 (322)
++||++|.|+++++++|.+.+.+...
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877543
No 99
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.87 E-value=2.4e-22 Score=168.46 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=105.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeee-cCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
....++|+++|.+|||||||+|+|.+..+... ....+.+ .....+...+ ..+.+|||||...+..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 84 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--FRERAVDIDGERIKIQLWDTAGQERFRK---------- 84 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--EEEEEEEETTEEEEEEEEECCCSHHHHT----------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--EEEEEEEECCEEEEEEEEECCCchhhhh----------
Confidence 34579999999999999999999997765432 2222222 2222233333 5789999999753210
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
......+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+........+....+....+. +
T Consensus 85 -~~~~~~~~~~d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~ 160 (189)
T 1z06_A 85 -SMVQHYYRNVHAVVFVYDMTNMASF--HSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-P 160 (189)
T ss_dssp -TTHHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-C
T ss_pred -hhhHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-E
Confidence 0112345788999999999653222 2344455544332 234688999999999976433333444555554555 6
Q ss_pred EEEeecCCC---CCHHHHHHHHHHHhhh
Q 020714 292 IFMTSGLKG---AGLKALTQYLMEQFKD 316 (322)
Q Consensus 292 ~~~iSa~~g---~gi~el~~~i~~~l~~ 316 (322)
++++||++| .|+++++++|.+.+.+
T Consensus 161 ~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 161 LFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp EEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred EEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999999 9999999999887754
No 100
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=1.3e-21 Score=161.90 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=111.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+++|.+|||||||+|+|.+..+.. ...++++.+.....+...+..+.+|||||+..+.....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA----------- 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-----------
Confidence 467899999999999999999999876543 22233333322223445677899999999876644221
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC------CC-C
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL------PG-Y 289 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~------~~-~ 289 (322)
..+..+|++++|+|++++.... ....+..+... +.|+++|+||+|+..... .+....+... .+ .
T Consensus 74 -~~~~~~d~~i~v~d~~~~~~~~---~~~~l~~~~~~---~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 2lkc_A 74 -RGAQVTDIVILVVAADDGVMPQ---TVEAINHAKAA---NVPIIVAINKMDKPEANP--DRVMQELMEYNLVPEEWGGD 144 (178)
T ss_dssp -SSCCCCCEEEEEEETTCCCCHH---HHHHHHHHGGG---SCCEEEEEETTTSSCSCH--HHHHHHHTTTTCCBTTTTSS
T ss_pred -HHHhhCCEEEEEEECCCCCcHH---HHHHHHHHHhC---CCCEEEEEECccCCcCCH--HHHHHHHHhcCcChhHcCCc
Confidence 3467889999999997653222 22344444432 567999999999986421 1222222211 11 1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
.+++++||++|.|+++++++|.+.+...++.
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 3699999999999999999999998877654
No 101
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.87 E-value=6.5e-22 Score=161.04 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.++|+++|.+|||||||+|++.+....... .+++...........+ ..+.+|||||...+.. ..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~------ 68 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC--DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------MR------ 68 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC--CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH------HH------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc--CCccceEEEEEEEECCEEEEEEEEECCCchhhhH------HH------
Confidence 478999999999999999999877543221 2222222222233333 4578999999864321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..+|++++|+|+++..+. ..+..++..+... ...+.|+++|+||+|+..... .......+....+. +++++
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~~ 144 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSF--EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV-ESRQAQDLARSYGI-PYIET 144 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-CHHHHHHHHHHHTC-CEEEE
T ss_pred HHhhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc-CHHHHHHHHHHcCC-eEEEe
Confidence 1234567999999999653221 2334455444322 223578999999999976322 22333344443454 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|+++++++|.+.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 102
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=2e-22 Score=177.61 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
.+|+++|.||||||||+|+|++.. ..++..+++|.+.....+...+..+.+|||||+..+..........+.+.+.+-.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 479999999999999999999986 4567778999888888777788899999999997654321000222233333333
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
...+|++++|+|+++ . .....+...+... +.|+++|+||+|+....... .....+....++ +++++||++
T Consensus 81 ~~~~d~vi~VvDas~----~-~~~~~l~~~l~~~---~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~-~vi~~SA~~ 150 (256)
T 3iby_A 81 DLEYDCIINVIDACH----L-ERHLYLTSQLFEL---GKPVVVALNMMDIAEHRGIS-IDTEKLESLLGC-SVIPIQAHK 150 (256)
T ss_dssp HSCCSEEEEEEEGGG----H-HHHHHHHHHHTTS---CSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCS-CEEECBGGG
T ss_pred hCCCCEEEEEeeCCC----c-hhHHHHHHHHHHc---CCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCC-CEEEEECCC
Confidence 478999999999965 2 2222334444433 56899999999986432110 011223233344 699999999
Q ss_pred CCCHHHHHHHHHHH
Q 020714 300 GAGLKALTQYLMEQ 313 (322)
Q Consensus 300 g~gi~el~~~i~~~ 313 (322)
|.|+++++++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999886
No 103
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.87 E-value=2.1e-23 Score=186.24 Aligned_cols=159 Identities=23% Similarity=0.358 Sum_probs=107.9
Q ss_pred chHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C----------------CCCCCCCCCChhhHHHHHHhhCC
Q 020714 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQEPTWDEKYRERTD 85 (322)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~~~~w~~~~~~~~~ 85 (322)
.+||.|||.++..+... ..+.+|+|+++.|||.|..+ + ||+||++++..+.|..||.+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~--~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~ 80 (282)
T 1puj_A 3 IQWFPGHMAKARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI 80 (282)
T ss_dssp ------CTTHHHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcCCchHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCC
Confidence 58999999999888766 56689999999999999998 5 79999998888999999988777
Q ss_pred eEEEeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 86 ~i~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
.+++.++ ++.+..++.+. ....+....+. ...+......++++++|.||||||||+|+|.+...
T Consensus 81 ~~i~iSA~~~~gi~~L~~~----------i~~~l~~~~~~-----~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPA----------SKEILQEKFDR-----MRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEECCTTTCTTGGGHHHH----------HHHHHHHHHHH-----HHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred cEEEEECCCcccHHHHHHH----------HHHHHHHHHHH-----HHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce
Confidence 8888888 78888877322 12222221110 01122345678999999999999999999999988
Q ss_pred eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 165 ~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
+.++..+|+|++.+... .+..+.++||||+..+.
T Consensus 146 ~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 146 AKTGDRPGITTSQQWVK---VGKELELLDTPGILWPK 179 (282)
T ss_dssp C------------CCEE---ETTTEEEEECCCCCCSC
T ss_pred eecCCCCCeeeeeEEEE---eCCCEEEEECcCcCCCC
Confidence 88999999998765322 25689999999998654
No 104
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=4.3e-22 Score=169.99 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=111.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||++++.+..+.. ...+++.......+...+ ..+.+|||||...+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 74 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR---------- 74 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH----------
Confidence 356899999999999999999999776432 222222222222233333 478999999997654321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH--------HHHHHHHHhc
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--------LLKVAEQFKH 285 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--------~~~~~~~~~~ 285 (322)
...+..+|++++|+|+++..+. ..+. .|+..+.... ++.|+++|+||+|+...... .......+..
T Consensus 75 --~~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 75 --PLSYRGADIFVLAFSLISKASY--ENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred --HhhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 1346788999999999653222 2232 4555554332 36789999999999765332 2233444444
Q ss_pred CCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 286 LPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 286 ~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
..+..+++++||++|.|+++++++|.+.+...
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 150 QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 44555799999999999999999999988764
No 105
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=162.87 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=106.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..+.++|+++|.+|||||||+|+|.+....... ...|.......+...+..+.+|||||...+.. .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------~ 83 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN------------L 83 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGG------------G
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHH------------H
Confidence 345789999999999999999999987622111 11222333334556678999999999875422 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CC--CCCcEEEEEeCCCCCCChhHHHHHHHHH--hcCC-CC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-AP--PKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLP-GY 289 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~--~~~p~ivV~NK~Dl~~~~~~~~~~~~~~--~~~~-~~ 289 (322)
....+..+|++++|+|+++..+ ...+..++..+... .. .+.|+++|+||+|+..... .++....+ .... ..
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLR--MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHH--HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSC
T ss_pred HHHHHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCc
Confidence 1245678899999999965321 22344455444322 11 4688999999999976422 22222222 1211 12
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.++++|||++|.|+++++++|.+.+.+.
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 3699999999999999999999988654
No 106
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=164.93 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=108.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+.. ....++.......+...+ ..+.+|||||...+...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 82 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------- 82 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC--SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------
Confidence 356899999999999999999999775432 222233232222333444 56889999998765321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAE 281 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~~ 281 (322)
....+..+|++++|+|+++..+.. .+. .|+..+... .++.|+++|+||+|+..... ...+...
T Consensus 83 -~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 83 -RPLSYPMTDVFLICFSVVNPASFQ--NVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred -HHHhcCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 113567899999999996542221 222 344444432 23678999999999976421 1122334
Q ss_pred HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+....+..++++|||++|.|+++++++|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 159 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4444445546999999999999999999998875
No 107
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=5.3e-22 Score=167.43 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=106.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+...... ++........... ...+.+|||||... . ..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~----~~------ 91 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP--TLESTYRHQATIDDEVVSMEILDTAGQED--T----IQ------ 91 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCCC--C----HH------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCC--CCCceEEEEEEECCEEEEEEEEECCCCCc--c----cc------
Confidence 4578999999999999999999998765432221 1111122222233 35689999999874 0 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
....+..+|++++|+|+++..+. ..+..|+..+... ...+.|+++|+||+|+.............+....+. +++
T Consensus 92 -~~~~~~~~d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 167 (196)
T 2atv_A 92 -REGHMRWGEGFVLVYDITDRGSF--EEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFY 167 (196)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEE
T ss_pred -hhhhhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEE
Confidence 11335667999999999654322 2233344433321 224678999999999976433222333333333344 699
Q ss_pred EeecCCCC-CHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGA-GLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~-gi~el~~~i~~~l~~~ 317 (322)
++||++|. |+++++++|.+.+.+.
T Consensus 168 ~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 168 ECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred EECCCcCCcCHHHHHHHHHHHHHhh
Confidence 99999999 9999999999988764
No 108
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4e-22 Score=168.03 Aligned_cols=164 Identities=19% Similarity=0.155 Sum_probs=104.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeec-CCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
...++|+++|.+|||||||+|+|.+..+.... +..+.+ ........ ...+.+|||||...+. ..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~---- 72 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT---YRQVISCDKSVCTLQITDTTGSHQFP------AM---- 72 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE---EEEEEEETTEEEEEEEEECCGGGSCH------HH----
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc---eeEEEEECCEEEEEEEEeCCChHHhH------HH----
Confidence 45789999999999999999999986653211 111111 11112222 3468999999986431 11
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
....+..+|++++|+|+++..+... ..+...+..+... .++.|+++|+||+|+...... ......+....+. ++
T Consensus 73 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~ 147 (199)
T 2gf0_A 73 --QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQREVD-TREAQAVAQEWKC-AF 147 (199)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSSCSSC-HHHHHHHHHHHTC-EE
T ss_pred --HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCccccC-HHHHHHHHHHhCC-eE
Confidence 1123466899999999965332211 1233334443321 235789999999999764222 2223333333344 69
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+++||++|.|+++++++|.+.+..+.
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 148 METSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999887653
No 109
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.6e-22 Score=168.42 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=107.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+.... ..++...........+ ..+.+|||||...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 89 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence 45689999999999999999999987654322 1122222212223333 46899999998755321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH------------HHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAE 281 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------------~~~~~ 281 (322)
....+..+|++++|+|+++..+. ... ..|+..+... .++.|+++|+||+|+....... .....
T Consensus 90 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (207)
T 2fv8_A 90 -RPLSYPDTDVILMCFSVDSPDSL--ENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165 (207)
T ss_dssp -GGGGCTTCCEEEEEEETTCHHHH--HHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred -HHhhcCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHH
Confidence 11356789999999999653221 122 2344444332 2467899999999997652211 12233
Q ss_pred HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
.+....+..+++++||++|.|+++++++|.+.+....
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3443445546999999999999999999999987653
No 110
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=168.68 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=105.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||+|++++..+.. ....++........... ...+.+|||||...+.. .
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~---- 85 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS--EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN------C---- 85 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC------T----
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCc--ccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh------H----
Confidence 3467999999999999999999999876432 22223322222222223 35678999999875532 0
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC---CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA---PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~---~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (322)
. ..+..+|++++|||+++..+. ..+..|+..+.... ..+.|+++|+||+|+...+....+....+....+.
T Consensus 86 ~---~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 159 (187)
T 3c5c_A 86 E---RYLNWAHAFLVVYSVDSRQSF--DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC- 159 (187)
T ss_dssp H---HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred H---HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-
Confidence 1 235678999999999753222 23445555544321 23678999999999975433333334444444455
Q ss_pred cEEEeec-CCCCCHHHHHHHHHHHhhh
Q 020714 291 RIFMTSG-LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 291 ~~~~iSa-~~g~gi~el~~~i~~~l~~ 316 (322)
++++||| ++|.||+++|++|.+.+.+
T Consensus 160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 160 LFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred cEEEEeecCccccHHHHHHHHHHHHhh
Confidence 6999999 8999999999999998754
No 111
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=8.1e-22 Score=167.10 Aligned_cols=162 Identities=11% Similarity=0.092 Sum_probs=106.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|++.+..+.... .+.++...... +...+ ..+.+|||||...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~----------- 89 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRL----------- 89 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-CCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-CCcccceEEEE-EEECCEEEEEEEEECCCchhHHHH-----------
Confidence 45689999999999999999999987654321 12222222111 22333 47899999998754321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCChhH------------HHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE 281 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~------------~~~~~~ 281 (322)
....+..+|++++|+|+++..+.. .+ ..|+..+... .++.|+++|+||+|+...... ..+...
T Consensus 90 -~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 90 -RPLSYPDTDVILMCFSIDSPDSLE--NIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred -HHHhcCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 113567899999999996532221 22 2344444322 236789999999999865321 112233
Q ss_pred HHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 282 ~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+....+..+++++||++|.|+++++++|.+.+.
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 166 DMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4444445546999999999999999999998875
No 112
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.9e-22 Score=191.07 Aligned_cols=162 Identities=24% Similarity=0.394 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (322)
++|+++|.||||||||+|+|++...+.+...+|+|++.........+..+.+|||||+...... ........+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~~~ 79 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP----FLAQIRQQAEIA 79 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------C----HHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh----HHHHHHHHHHHH
Confidence 6899999999999999999999888888899999999887776677889999999999743221 122233344556
Q ss_pred cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCC
Q 020714 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (322)
Q Consensus 220 ~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~ 299 (322)
+..+|++++|+|+..+.+..+..+..++. . .++|+++|+||+|+....... ..+.. .+..+++++||++
T Consensus 80 ~~~ad~il~vvD~~~~~~~~d~~~~~~l~---~---~~~pvilv~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAADEEVAKILY---R---TKKPVVLAVNKLDNTEMRANI----YDFYS-LGFGEPYPISGTH 148 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHHHHHHHHHHT---T---CCSCEEEEEECCCC-----CC----CSSGG-GSSCCCEECBTTT
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHH---H---cCCCEEEEEECccCccchhhH----HHHHH-cCCCCeEEEeCcC
Confidence 78899999999998876655544444333 2 257899999999987542111 11222 2444689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 020714 300 GAGLKALTQYLMEQFKD 316 (322)
Q Consensus 300 g~gi~el~~~i~~~l~~ 316 (322)
|.|+++|+++|.+.+.+
T Consensus 149 g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TBTHHHHHHHHHHTGGG
T ss_pred CCChHHHHHHHHHhcCc
Confidence 99999999999998864
No 113
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=2.1e-22 Score=167.22 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=101.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEE--EeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|++.+..+... ..+++....... .......+.+|||||...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 72 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD--YVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL----------- 72 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 3568999999999999999999987654321 111211111101 1122345679999998755321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChhH----------HHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD----------LLKVAEQF 283 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~----------~~~~~~~~ 283 (322)
....+..+|++++|+|++++.+. ..+. .|+..+.... ++.|+++|+||+|+...... .......+
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 73 -RPLSYRGADVFILAFSLISKASY--ENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp -GGGGGTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred -HHhhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 11346788999999999653222 1222 3444444322 36789999999999765432 22334445
Q ss_pred hcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 284 ~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
....+..++++|||++|.|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 54445557999999999999999999998775
No 114
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.87 E-value=1.6e-21 Score=164.54 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=108.9
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEe-eCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
.....++|+++|.+|||||||+|++.+............+.......+. .....+.+|||||...+....-..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~------ 89 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY------ 89 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc------
Confidence 3456789999999999999999999886443322222222222221121 345789999999987654321000
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-------hHHHHHHHHHhc-
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-------KDLLKVAEQFKH- 285 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-------~~~~~~~~~~~~- 285 (322)
...+..+|++++|||+++...+....+..++..+.. ..++.|+++|+||+|+.... .........++.
T Consensus 90 ---~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 90 ---EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp ---HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 133567899999999987522233456667776532 23468899999999987632 222333445555
Q ss_pred ---CCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 286 ---LPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 286 ---~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
..+. ++++|||++ .||+++|+.|.+.+
T Consensus 166 ~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 GLEKLHL-SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TCTTSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhcCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence 3444 699999999 99999999998865
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=8.8e-22 Score=164.53 Aligned_cols=166 Identities=20% Similarity=0.284 Sum_probs=113.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
+.++|+++|.+|||||||+|+|.+... .....+++|.+.....+...+..+.+|||||+..+.... ....+...+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS----HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc----HHHHHHHHH
Confidence 468999999999999999999998754 344557777776666666778899999999998654321 111122221
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
-....+|++++|+|.++ ......++..+... +.|+++|+||+|+....... .....+....+. +++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~-----~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~~~~Sa 150 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA-----LERNLYLTLQLMEM---GANLLLALNKMDLAKSLGIE-IDVDKLEKILGV-KVVPLSA 150 (188)
T ss_dssp HHHHCCSEEEEEEEGGG-----HHHHHHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTS-CEEECBG
T ss_pred HhccCCCEEEEEecchh-----HHHHHHHHHHHHhc---CCCEEEEEEhhhccccccch-HHHHHHHHHhCC-CeEEEEe
Confidence 11235799999999853 22344555555443 56899999999986432111 112223332344 6999999
Q ss_pred CCCCCHHHHHHHHHHHhhhcC
Q 020714 298 LKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~~~ 318 (322)
++|.|+++++++|.+.+..+.
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC-
T ss_pred cCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=5e-22 Score=176.41 Aligned_cols=162 Identities=19% Similarity=0.301 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.++|+++|.||||||||+|+|++.. ..++..+|+|.....+.+.. +..+.+|||||+..+..... .+.+.+.+-
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~----~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSP----EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSH----HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCCh----HHHHHHHHH
Confidence 5789999999999999999999875 34667788888877666555 78899999999986643221 122222222
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
....+|++++|+|+++. + ....+...+... +.|+++|+||+|+....... .....+....+. +++++||+
T Consensus 77 ~~~~~d~vi~V~D~t~~----e-~~~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~-~vi~~SA~ 146 (272)
T 3b1v_A 77 LSQRADSILNVVDATNL----E-RNLYLTTQLIET---GIPVTIALNMIDVLDGQGKK-INVDKLSYHLGV-PVVATSAL 146 (272)
T ss_dssp HTTCCSEEEEEEEGGGH----H-HHHHHHHHHHHT---CSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTS-CEEECBTT
T ss_pred hcCCCCEEEEEecCCch----H-hHHHHHHHHHhc---CCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCC-CEEEEEcc
Confidence 22468999999999642 2 223343443322 57899999999986422111 112223333344 69999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 020714 299 KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~ 316 (322)
+|.|+++++++|.+.+..
T Consensus 147 ~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTBSHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987653
No 117
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.86 E-value=5.1e-22 Score=165.81 Aligned_cols=163 Identities=13% Similarity=0.140 Sum_probs=106.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+.... .+ +........+... ...+.+|||||...+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CC-ccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 35689999999999999999999987653211 11 1111111122223 356899999998755321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE 281 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~ 281 (322)
....+..+|++++|+|+++..+. ..+ ..|+..+... .++.|+++|+||+|+.... ....+...
T Consensus 72 -~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 72 -RPLSYPDSDAVLICFDISRPETL--DSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred -HHhhcCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 11346789999999999654322 222 3444444332 2468899999999997431 11122334
Q ss_pred HHhcCCCCCcEEEeecC-CCCCHHHHHHHHHHHhhh
Q 020714 282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 282 ~~~~~~~~~~~~~iSa~-~g~gi~el~~~i~~~l~~ 316 (322)
.+....+..++++|||+ +|.|++++|++|.+.+.+
T Consensus 148 ~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 148 NMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 44444444479999999 699999999999998764
No 118
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.86 E-value=2.5e-22 Score=170.34 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=81.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee-eeEEEEEeeC----CccEEEEeCCCcccCCCCCChhhHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA----DTQICIFDTPGLMLNKSGYSHKDVKV 211 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~~~~~~~~ 211 (322)
...++|+++|.+|||||||+|+|.+...........++. +.....+... ...+.+|||||+..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------- 86 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY----------- 86 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-----------
Confidence 456899999999999999999999872211222222221 2222223334 347899999998532
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC---CCCcEEEEEeCCCCCC-ChhHHHHHHHHHhcCC
Q 020714 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP---PKQKRVLCMNKVDLVT-KKKDLLKVAEQFKHLP 287 (322)
Q Consensus 212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~---~~~p~ivV~NK~Dl~~-~~~~~~~~~~~~~~~~ 287 (322)
.......+..+|++++|+|++++.+. ..+..|+..+..... .+.|+++|+||+|+.. ......+....+....
T Consensus 87 -~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~ 163 (208)
T 2yc2_C 87 -KEQISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN 163 (208)
T ss_dssp -HHHHSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT
T ss_pred -HHHHHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc
Confidence 11233457889999999999654322 344566666654333 4688999999999976 4333233344444444
Q ss_pred CCCcEEEeecCC-CCCHHHHHHHHHHHhhhc
Q 020714 288 GYERIFMTSGLK-GAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 288 ~~~~~~~iSa~~-g~gi~el~~~i~~~l~~~ 317 (322)
+. +++++||++ |.|+++++++|.+.+.+.
T Consensus 164 ~~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 164 TL-DFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp TC-EEEECCC-------CHHHHHHHHHHHHH
T ss_pred CC-EEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 54 699999999 999999999999987653
No 119
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.86 E-value=3.4e-23 Score=175.25 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=107.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|++..+.... .+.++.+.....+...+ ..+.+|||||...+.....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------- 100 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS--------- 100 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH-HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH---------
Confidence 45799999999999999999999987644221 12223233333333444 5689999999876543221
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+.............+....+. ++++
T Consensus 101 ---~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 174 (199)
T 3l0i_B 101 ---SYYRGAHGIIVVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLE 174 (199)
T ss_dssp ---C--CCCSEEEECC-CCCSHH--HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCC
T ss_pred ---HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEE
Confidence 34678899999999976432 23455677777665555789999999999976533222223444555555 5999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||++|.|+++++++|.+.+.++
T Consensus 175 vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 175 TSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp CCC---HHHHHHHHHHTTTTTTT
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887653
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1.7e-21 Score=173.14 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=117.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (322)
.++|+++|.+|||||||+|+|++... .++..+++|.......+...+..+.+|||||+..+.... ....+.+.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~~ 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIARNFI 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHHHHhh
Confidence 57899999999999999999999876 677888888888777777788889999999998654422 2222333333
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecC
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~ 298 (322)
....+|++++|+|+++. .... .+...+.... ..|+++|+||+|+........ ....+.+..+. +++++||+
T Consensus 78 ~~~~~d~vi~v~D~~~~----~~~~-~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~-~~~~~Sa~ 148 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL----MRNL-FLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGV-PVIPTNAK 148 (271)
T ss_dssp HTTCCSEEEEEEEGGGH----HHHH-HHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSS-CEEECBGG
T ss_pred hccCCcEEEEEecCCcc----hhhH-HHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCC-cEEEEEeC
Confidence 44789999999999652 2222 2222222221 267999999999764321100 02223333344 69999999
Q ss_pred CCCCHHHHHHHHHHHhhhc
Q 020714 299 KGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 299 ~g~gi~el~~~i~~~l~~~ 317 (322)
+|.|+++++++|.+.+...
T Consensus 149 ~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GTBTHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988654
No 121
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.86 E-value=3.4e-21 Score=162.27 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|.+|||||||+|++.+.........+.++.+.....+..++. .+.+|||+|........ .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~---------~- 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL---------H- 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT---------G-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH---------H-
Confidence 46899999999999999999998643221222222222222222334443 56789999975321100 0
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
...+..+|++++|||+++..+.. ....|...+... ...+.|+++|+||+|+...+.........++...+. ++++
T Consensus 75 -~~~~~~~~~~i~v~dv~~~~s~~--~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e 150 (192)
T 2cjw_A 75 -DHCMQVGDAYLIVYSITDRASFE--KASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIE 150 (192)
T ss_dssp -GGHHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred -HhhcccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEE
Confidence 12345679999999997643322 233343333221 224678999999999975433222333444444444 6999
Q ss_pred eecCCCCCHHHHHHHHHHHhhh
Q 020714 295 TSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~ 316 (322)
|||++|.||+++|++|.+.+..
T Consensus 151 ~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 151 TSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred eccccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 122
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=5.2e-22 Score=170.73 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=114.0
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCC-eeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT-KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
.....++|+++|.+|||||||+|+++.. .........+++...........+..+.+|||||...+.....
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------- 82 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD-------- 82 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH--------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH--------
Confidence 3456799999999999999999995543 3444566777776665544444456789999999876543211
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEE
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
..+..+|++++|+|+++..+. ..+..|+..+... .++.|+++|+||+|+....... ....+....+. +++
T Consensus 83 ----~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~ 152 (221)
T 3gj0_A 83 ----GYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYY 152 (221)
T ss_dssp ----HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTC-EEE
T ss_pred ----HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHh-CCCCCEEEEEECCccccccccH--HHHHHHHHcCC-EEE
Confidence 235678999999999764322 2334455555432 2367899999999997643211 11112222233 699
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+|||++|.|+++++++|.+.+...
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 123
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.85 E-value=1.2e-21 Score=167.00 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=106.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC--CccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+..+.... .+ +........+... ...+.+|||||...+....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---------- 93 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP-TVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR---------- 93 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC-CSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTG----------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC-ccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHH----------
Confidence 45789999999999999999999987654211 11 1111112222233 3568999999987653211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE 281 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~-~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~ 281 (322)
...+..+|++++|||+++..+. ..+ ..|+..+... .++.|+++|+||+|+.... ....+...
T Consensus 94 --~~~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 168 (205)
T 1gwn_A 94 --PLSYPDSDAVLICFDISRPETL--DSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 168 (205)
T ss_dssp --GGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred --HhhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence 1346789999999999653222 222 3454444432 2468899999999997431 11122334
Q ss_pred HHhcCCCCCcEEEeecC-CCCCHHHHHHHHHHHhhh
Q 020714 282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 282 ~~~~~~~~~~~~~iSa~-~g~gi~el~~~i~~~l~~ 316 (322)
.++...+..++++|||+ +|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 169 NMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 44444444469999999 689999999999988764
No 124
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=170.68 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=107.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
.+.++|+|+|.+|||||||+|+|.+..+....+ |.......+...+..+.||||||...+... .
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p----T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------~ 226 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPL------------W 226 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-----CCS------------H
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCccc----ccceEEEEEecCcEEEEEEECCCCHhHHHH------------H
Confidence 356799999999999999999999877554332 333333445567788999999997654321 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH-hcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCC---CCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER-MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~-~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 292 (322)
...+..+|++|+|||+++..+. ..+..++.. +.....++.|+++|+||+|+..... ..++...+.... ...++
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 303 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYI 303 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEE
T ss_pred HHHhccCCEEEEEEECCchHHH--HHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEE
Confidence 1235678999999999765433 233333333 3333345789999999999986532 223333332211 12258
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
++|||++|.||++++++|.+.+.++
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988754
No 125
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=6.9e-21 Score=167.97 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=118.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-ceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++|+|+|.+|||||||+|+|++.........+. +|...........+..+.||||||+..+.... ..........
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~-~~~~~~i~~~ 98 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC-EALYKEVQRC 98 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC-HHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH-HHHHHHHHHH
Confidence 457899999999999999999999887555444444 67776666666778899999999998664322 1212222344
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe-CCCCCCChhH----------HHHHHHHHh
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN-KVDLVTKKKD----------LLKVAEQFK 284 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N-K~Dl~~~~~~----------~~~~~~~~~ 284 (322)
....+..+|++++|+|++. ....+..+..++..+..... ..|.++|+| |+|+...... .......+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 4456788999999999974 34344455566665532211 245666666 9999854211 111222222
Q ss_pred cCCC-CCcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 285 HLPG-YERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 285 ~~~~-~~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
..+. +.+ +++||++|.|+++++++|.+.+....
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHHHhCC
Confidence 2211 222 88999999999999999999987743
No 126
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.85 E-value=1.7e-20 Score=169.60 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=119.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHH-HH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRV-ES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~ 215 (322)
..++|+++|.+|||||||+|++++......+..+++|.......... ++..+.+|||||...+ ....+ ..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 73 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF--------MENYFTKQ 73 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH--------HHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH--------hhhhhhhH
Confidence 46899999999999999999999876555566677777766665543 5678999999998643 11011 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCC--Chh----HHHHHHHHHhcCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKK----DLLKVAEQFKHLPG 288 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~--~~~----~~~~~~~~~~~~~~ 288 (322)
....+..+|++++|+|+++..+..+. .+..++..+... .++.|+++|+||+|+.. .+. ........+....+
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 22345789999999999875443332 234445554432 34689999999999987 332 33355666777776
Q ss_pred C--CcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 289 Y--ERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 289 ~--~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
. .+++++||++ .|+.+++..+.+.+..
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 3 5799999999 8999999988876543
No 127
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=2.7e-20 Score=155.44 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCCh---hhHHHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVESA 216 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~~~~~~~~~~ 216 (322)
++|+++|.+|||||||+|++.+..+. ....+++|........ . .+.+|||||+..... ... +.........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMG-LPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTT-SCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEec--C--CEEEEECCCcccccc-CCHHHHHHHHHHHHHH
Confidence 58999999999999999999987643 4455666665544322 2 789999999753221 111 1112222223
Q ss_pred Hhh-cccccEEEEEEeCCCCCCCcHHHHHHH------------HHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHH
Q 020714 217 WSA-VNLFEVLMVVFDVHRHLTSPDSRVIRL------------IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF 283 (322)
Q Consensus 217 ~~~-~~~ad~ii~v~D~s~~~~~~~~~~~~~------------l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~ 283 (322)
+.. ...+++++.|+|.+. .......| +..+.. .+.|+++|+||+|+.... ......+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~---~~~~~~~ 145 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKA----APEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV---QEVINFL 145 (190)
T ss_dssp HHHHGGGCCEEEEEEETTH----HHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH---HHHHHHH
T ss_pred HHhhhccCCEEEEEEcchh----hhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcH---HHHHHHH
Confidence 333 455677777777632 11111111 122222 357899999999998764 2223333
Q ss_pred hcCCCCC------cEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 284 KHLPGYE------RIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 284 ~~~~~~~------~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
....+.. ++++|||++|.|+++++++|.+.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 146 AEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 3333332 4799999999999999999999887653
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=1.4e-20 Score=164.95 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=116.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-CceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|++.........+ ++|...........+..+.||||||+.......+.........
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 346799999999999999999999998766554433 5777777776777888999999999964321100011112222
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH-HH-----HHHHHHhcCCC
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LL-----KVAEQFKHLPG 288 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~-~~-----~~~~~~~~~~~ 288 (322)
..+.....+|++|+|+|++. .+..+..+..++..+......+.|+++|.||+|+...... .. .....+.+..+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 22344589999999999964 4444555566666653333335689999999999764211 10 11223333334
Q ss_pred CCcEEEeecCC-----CCCHHHHHHHHHHHhhhcCC
Q 020714 289 YERIFMTSGLK-----GAGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 289 ~~~~~~iSa~~-----g~gi~el~~~i~~~l~~~~~ 319 (322)
. .++.+++.. +.|+++|++.|.+.+.+++-
T Consensus 177 ~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 177 G-RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp T-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred C-eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 3 366666554 68999999999999987643
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=3.2e-21 Score=180.81 Aligned_cols=164 Identities=25% Similarity=0.306 Sum_probs=113.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc-cEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
...++|+++|.+|+|||||+|+|++.....++..+++|.+.....+...+. .+.+|||||+..+...... .+..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-----~~~~ 106 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-----RVEK 106 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-----CHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH-----HHHH
Confidence 456899999999999999999999988777777888888776666655554 8999999999876432211 1334
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
+...+..+|++++|+|+ ........+..++... +.|+++|+||+|+...... +....+.+..+. +++++
T Consensus 107 ~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~-~v~~v 175 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEA-KVLLV 175 (423)
T ss_dssp HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTC-CCCCC
T ss_pred HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCC-CEEEE
Confidence 55667889999999998 2233333344444433 4679999999999876543 445666666666 69999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||++|.|+++++++|.+.+.+
T Consensus 176 SAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999998843
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.84 E-value=6.6e-21 Score=174.21 Aligned_cols=171 Identities=19% Similarity=0.294 Sum_probs=116.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
..+|+++|.||||||||+|+|++.+. .+...+.+|.......+...+ ..+.+|||||+....... ..+ ....+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~--~~l---~~~fl 231 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG--VGL---GHQFL 231 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT--TTT---HHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCccccccc--chh---HHHHH
Confidence 34689999999999999999987653 346667778777666665554 789999999986532111 111 12234
Q ss_pred hhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 218 SAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..+|++|+|+|+++.. ......+..++.++.... ...+|+++|+||+|+....+..+++...+.. ..++++
T Consensus 232 ~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~---~~~v~~ 308 (342)
T 1lnz_A 232 RHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD---DYPVFP 308 (342)
T ss_dssp HHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS---CCCBCC
T ss_pred HHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc---CCCEEE
Confidence 4566789999999997521 122233444555554322 2468899999999998644333333333321 136899
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcC
Q 020714 295 TSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
+||++|.|+++|+++|.+.+.+..
T Consensus 309 iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 309 ISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred EECCCCcCHHHHHHHHHHHHhhCc
Confidence 999999999999999999987653
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=4.1e-21 Score=182.84 Aligned_cols=164 Identities=24% Similarity=0.386 Sum_probs=105.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (322)
...+|+++|.||||||||+|+|++.+...+...+|+|++.........+..+.+|||||+..... .........+.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~----~~~~~~~~~~~ 97 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE----PFLAQIRQQAE 97 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC----------CCHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch----HHHHHHHHHHH
Confidence 35789999999999999999999998888889999999988777767788999999999873221 11222333444
Q ss_pred hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeec
Q 020714 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (322)
Q Consensus 218 ~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa 297 (322)
..+..+|++|+|+|...+.+..+..+..++.. .++|+++|+||+|+...... ...+.. .+..+++++||
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~~~~~~----~~e~~~-lg~~~~~~iSA 166 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRAN----IYDFYS-LGFGEPYPISG 166 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC-------------CCSGG-GSSSSEEECCT
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccchhhhhh----HHHHHH-cCCCceEEeec
Confidence 56788999999999977666655555444432 35789999999998653211 111222 24446789999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 020714 298 LKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~~ 316 (322)
++|.|++++++++.+.+..
T Consensus 167 ~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHhhccc
Confidence 9999999999999987754
No 132
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.6e-22 Score=171.71 Aligned_cols=162 Identities=13% Similarity=0.129 Sum_probs=105.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee--CCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
.+.++|+++|.+|||||||+|++.+..+... ...++.......... ....+.+|||||...+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR------------ 93 (204)
Confidence 4578999999999999999999987654321 122222222211222 234567999999865422
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh------------hHHHHHHHH
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAEQ 282 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~------------~~~~~~~~~ 282 (322)
.....+..+|++++|+|++++.+.... ...|+..+... .++.|+++|+||+|+.... .........
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 111245678999999999775444332 11344444332 2267899999999997643 112223344
Q ss_pred HhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 283 ~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
+....+..++++|||++|.|+++++++|.+.+
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 44445554689999999999999999998765
No 133
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.84 E-value=9.5e-21 Score=158.24 Aligned_cols=167 Identities=12% Similarity=0.186 Sum_probs=103.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecC-CCCceeeeEEEEE-----eeCCccEEEEeCCCcccCCCCCChhhHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVM-----TKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 212 (322)
.++|+++|.+|||||||+|++.+......+. .+....+.....+ ......+.+|||||+..+....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------- 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------- 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--------
Confidence 3789999999999999999999853221111 1111112111111 1135678999999986543211
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH---HHHHHHHhcCCCC
Q 020714 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGY 289 (322)
Q Consensus 213 ~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~---~~~~~~~~~~~~~ 289 (322)
...+..++++++|+|++++.. ....+..|+..+... .++.|+++|+||+|+....... ......++...++
T Consensus 74 ----~~~~~~~~~~i~v~d~~~~~~-s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 74 ----PHFMTQRALYLAVYDLSKGQA-EVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp ----HHHHHHSEEEEEEEEGGGCHH-HHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred ----HHHccCCcEEEEEEeCCcchh-HHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 122456799999999966421 112345566655432 2367899999999997653322 3344556655666
Q ss_pred C---cEEEeecCCCC-CHHHHHHHHHHHhhhcCC
Q 020714 290 E---RIFMTSGLKGA-GLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 290 ~---~~~~iSa~~g~-gi~el~~~i~~~l~~~~~ 319 (322)
. +++++||++|. |+++|++.|.+.+...+.
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 4 38999999997 999999999998876543
No 134
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.84 E-value=2.2e-20 Score=159.51 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=97.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
...++|+++|.+|||||||+++|++..+.... +.++..... +... +..+.+|||||+..+ ...+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~---------~~~~ 71 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--TSITDSSAI--YKVNNNRGNSLTLIDLPGHESL---------RFQL 71 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC--CCCSCEEEE--EECSSTTCCEEEEEECCCCHHH---------HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc--CCcceeeEE--EEecCCCccEEEEEECCCChhH---------HHHH
Confidence 35689999999999999999999987654332 222222222 3333 567999999998632 1101
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHh-cc--cCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHh---
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GK--QAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFK--- 284 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~-~~--~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~--- 284 (322)
....+..+|++++|+|+++.. ........++..+ .. ....+.|+++|+||+|+..... ........+.
T Consensus 72 --~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~ 148 (214)
T 2fh5_B 72 --LDRFKSSARAVVFVVDSAAFQ-REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 148 (214)
T ss_dssp --HHHHGGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhhCCEEEEEEECCCcC-HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHh
Confidence 112368899999999996411 1111222322222 11 1233578999999999986532 1111111111
Q ss_pred ----------------c-CCC-------------CCcEEEeecCCC------CCHHHHHHHHHHHh
Q 020714 285 ----------------H-LPG-------------YERIFMTSGLKG------AGLKALTQYLMEQF 314 (322)
Q Consensus 285 ----------------~-~~~-------------~~~~~~iSa~~g------~gi~el~~~i~~~l 314 (322)
. ..+ ..++++|||++| .||+++|++|.+.+
T Consensus 149 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 149 VTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1 111 336999999999 99999999998753
No 135
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.83 E-value=5.9e-20 Score=167.09 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=110.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|.+|||||||++++.+..+. ....+++.......+...+. .+.+|||||...+..
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 218 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR----------- 218 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-----------
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence 456799999999999999999999876543 22334444444333444444 455999999875532
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHH-HHHHHhcccCCCCCcEEEEEeCCCCCCChh------------HHHHHH
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVA 280 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~-~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~------------~~~~~~ 280 (322)
.....+..+|++++|+|++++.+.. .+. .|+..+.... ++.|+++|+||+|+..... ......
T Consensus 219 -~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 219 -LRPLSYPQTDVFLICFSLVSPASFH--HVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred -HHHHhccCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 1123567899999999996543222 222 3444443322 2678999999999965421 112233
Q ss_pred HHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 281 ~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..+....+..++++|||++|.|+++++++|.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 444544565579999999999999999999988764
No 136
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=3.8e-20 Score=178.07 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=112.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|||||||+|+|++..+....+ |.......+...+..+.||||||...+... .
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~----T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------~ 383 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQDKIRPL------------W 383 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEESSSCEEEEEEECCCGGGSGG------------G
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCC----ccceeEEEEEeCCEEEEEEECCCcHHHHHH------------H
Confidence 456899999999999999999999877543333 444444445567889999999998754321 2
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc-ccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC---CCCCcE
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI 292 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~-~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 292 (322)
...+..+|++|+|||+++..+. ..+..++..+. .....++|+|+|+||+|+..... ..+....+... ....++
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 460 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRI--DEARQELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYV 460 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEE
T ss_pred HHHhccCCEEEEEEECcchhHH--HHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEE
Confidence 3467889999999999764322 33444554443 22234689999999999976422 22222222211 112258
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
++|||++|.||++++++|.+.+..+.
T Consensus 461 ~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp EECBTTTTBTHHHHHHHHHHHCC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987653
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=152.38 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=107.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC-CCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
....++|+++|.+|||||||+|+|++......... .++|...........+..+.||||||+...... .......+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP--NAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-------CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC--HHHHHHHHH
Confidence 34679999999999999999999999876433322 256666666666677889999999998754321 122222333
Q ss_pred HH-HhhcccccEEEEEEeCCCCCCCcHHHHHHHH-HHhcccCCCCCcEEEEEeCCCCCCChhHH------HHHHHHHhcC
Q 020714 215 SA-WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLCMNKVDLVTKKKDL------LKVAEQFKHL 286 (322)
Q Consensus 215 ~~-~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l-~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~------~~~~~~~~~~ 286 (322)
+. ...+..+|++|+|+|+++ .+..+.....++ ..++.. ...|+++|+||+|+....... ......+.+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 33 334578899999999964 344443333333 333221 124799999999987643211 0122233333
Q ss_pred CCCCcEEEeecCCC-----CCHHHHHHHHHHHhhhcC
Q 020714 287 PGYERIFMTSGLKG-----AGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 287 ~~~~~~~~iSa~~g-----~gi~el~~~i~~~l~~~~ 318 (322)
.+. .++.++...+ .|+.+|++.|.+.+.+++
T Consensus 181 ~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 181 FGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 333 4777776644 799999999999887654
No 138
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.79 E-value=4.9e-20 Score=162.64 Aligned_cols=140 Identities=22% Similarity=0.332 Sum_probs=97.5
Q ss_pred hHHHHHHhhcCCCCCccccCCCCceEEEccccCCCCCC-C--------------CCCCCCCCCChhhHHHHHHhhCCeEE
Q 020714 24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D--------------PQNNNAAKKQEPTWDEKYRERTDRIV 88 (322)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~da~~p~~~-~--------------~k~dl~~~~~~~~w~~~~~~~~~~i~ 88 (322)
+||.|||.++..+... ..+.+|+++++.|||.|..+ + ||+||++++..+.|..+|.+.+..+
T Consensus 2 ~w~PGhm~ka~~~~~~--~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKD--LLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHH--HHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHH--HHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 6999999999887766 66689999999999999887 4 6889998888889999998887777
Q ss_pred Eeec-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCc-eEEEEEcCCCCchhHHHHHHhCCeeee
Q 020714 89 FGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS-VAVGIIGAPNAGKSSIINYMVGTKVAA 166 (322)
Q Consensus 89 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~v~v~G~~~vGKStlin~l~~~~~~~ 166 (322)
+.++ ++.|...+.+ . .... ++++++|.||||||||+|+|.+.....
T Consensus 79 ~iSa~~~~gi~~L~~-----------------~---------------l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKK-----------------L---------------SFDRLARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp EECCTTSCHHHHHHH-----------------H---------------CCCTTCEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred EEECCCCcCHHHHHH-----------------H---------------HHHhhhheEEeCCCCCCHHHHHHHHhcccccc
Confidence 7777 7777665510 0 0111 689999999999999999999988878
Q ss_pred ecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 167 ~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
++..+|+|+..... ..+..+.+|||||+..+.
T Consensus 127 ~~~~~g~T~~~~~~---~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 127 VGAQPGITKGIQWF---SLENGVKILDTPGILYKN 158 (262)
T ss_dssp --------CCSCEE---ECTTSCEEESSCEECCCC
T ss_pred cCCCCCCccceEEE---EeCCCEEEEECCCcccCc
Confidence 88889988876532 234678999999998653
No 139
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=5.2e-19 Score=158.82 Aligned_cols=172 Identities=22% Similarity=0.276 Sum_probs=102.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee-----eecCCCC----------------------ceeee------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTHE------------ 177 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-----~~~~~~~----------------------~t~~~------------ 177 (322)
...++|+++|.+|||||||+|+|++..+. .+...|+ +|.+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998764 2222332 22210
Q ss_pred ------------EEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEE-EEEeCCCCCCCcHHHH
Q 020714 178 ------------VLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTSPDSRV 243 (322)
Q Consensus 178 ------------~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii-~v~D~s~~~~~~~~~~ 243 (322)
...........+.||||||+..... ..+..........+...+..++.++ +|+|++......+ .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~ 181 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--A 181 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--H
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH--H
Confidence 0001111246899999999975321 0111111111122233455666555 7999976544433 2
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-HhcC-CCCCcEEEeecCCCCCHHHHHHHHHHH
Q 020714 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-FKHL-PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~ 313 (322)
..++..+... +.|+++|+||+|+............. +... .+..+++++||++|.|+++++++|.+.
T Consensus 182 ~~~~~~~~~~---~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHCTT---CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhCCC---CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 3445555432 56899999999998654322222211 1111 123468899999999999999998764
No 140
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=1e-18 Score=147.70 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
..++|+++|++|||||||+++|.+..+..... +..+.+...+.+...+ ..+.+|||||...+....
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~----------- 71 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT----------- 71 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh-----------
Confidence 35899999999999999999999876543221 2222222233333444 356789999987653211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEe
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (322)
...+..++++++|+|+....+. ..+..|+..+........|+++|+||+|+.............+....+. .++++
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~ 147 (199)
T 2f9l_A 72 -SAYYRGAVGALLVYDIAKHLTY--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIET 147 (199)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred -HHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEE
Confidence 1223567999999999654322 2233444444332233578999999999975433222334444444454 58999
Q ss_pred ecCCCCCHHHHHHHHHHHhhh
Q 020714 296 SGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 296 Sa~~g~gi~el~~~i~~~l~~ 316 (322)
||+++.|+++++++|.+.+.+
T Consensus 148 Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=1.2e-18 Score=163.38 Aligned_cols=164 Identities=19% Similarity=0.260 Sum_probs=103.2
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee--------------eeEE-----EEEeeCCccEEEEeCCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--------------HEVL-----GVMTKADTQICIFDTPG 196 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~--------------~~~~-----~~~~~~~~~~~l~DtpG 196 (322)
....++|+++|.+|+|||||+|+|++............+. .... .........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567899999999999999999998743221000000000 0000 00000115789999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH
Q 020714 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD 275 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~ 275 (322)
+..+ ...+...+..+|++++|+|++++..... ......+..++. .|+++|+||+|+......
T Consensus 85 h~~~------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-----~~iivviNK~Dl~~~~~~ 147 (403)
T 3sjy_A 85 HEVL------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQNKVDVVSKEEA 147 (403)
T ss_dssp CGGG------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHHHH
T ss_pred cHHH------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-----CCEEEEEECccccchHHH
Confidence 7643 2344456688999999999987653332 233344444432 469999999999875321
Q ss_pred ---HHHHHHHHhcCC-CCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 276 ---LLKVAEQFKHLP-GYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 276 ---~~~~~~~~~~~~-~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.++....+.... ...+++++||++|.|+++|+++|.+.+..
T Consensus 148 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 112222222211 13369999999999999999999987754
No 142
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.77 E-value=9.3e-19 Score=157.68 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=106.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
||+++|.+|||||||++++.+..........+.|.......+ .....+.+|||||+..+.... + .....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~--------l-~~~~yy 70 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPS--------Y-DSERLF 70 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCS--------H-HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchh--------h-hhhhhc
Confidence 588999999999999999877644322111222222111112 235789999999999774210 0 011346
Q ss_pred ccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-------hHHHHHHHHHhcC----CC
Q 020714 221 NLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-------KDLLKVAEQFKHL----PG 288 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~-------~~~~~~~~~~~~~----~~ 288 (322)
+.++++|+|||+++. .... ..+..++..+... .++.|+++|+||+|+.... .+..+..+.+++. .+
T Consensus 71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence 889999999999876 2222 2344445544322 3478999999999998753 2334445566664 33
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 289 YERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 289 ~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
. +++++||++ .+|.+.|..|.+.+.+
T Consensus 149 i-~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 149 V-SFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp E-EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred c-eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 3 689999998 5999999999887765
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.77 E-value=5.8e-18 Score=160.14 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=102.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee------------------------------eecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA------------------------------AVSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~ 186 (322)
...++|+++|.+|+|||||+|+|++.... ......|.|.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45789999999999999999999643110 111224677776666666677
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-------cHHHHHHHHHHhcccCCCCCc
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQK 259 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-------~~~~~~~~l~~~~~~~~~~~p 259 (322)
..+.||||||+..+ ...+...+..+|++|+|+|++.+..+ +.......+..+ +.|
T Consensus 95 ~~~~iiDTPGh~~f------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~ 156 (439)
T 3j2k_7 95 KHFTILDAPGHKSF------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVK 156 (439)
T ss_pred eEEEEEECCChHHH------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCC
Confidence 89999999998643 33444567789999999999876431 222333333332 344
Q ss_pred -EEEEEeCCCCCCCh---hH---HHHHHHHHhcCCCC-----CcEEEeecCCCCCHHHHHH
Q 020714 260 -RVLCMNKVDLVTKK---KD---LLKVAEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ 308 (322)
Q Consensus 260 -~ivV~NK~Dl~~~~---~~---~~~~~~~~~~~~~~-----~~~~~iSa~~g~gi~el~~ 308 (322)
+++|+||+|+.... .. .......+....++ .+++++||++|+|++++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 89999999996421 11 12222223222232 3699999999999999654
No 144
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.9e-17 Score=140.69 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=102.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCe-eeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCC-ChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY-SHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~ 213 (322)
...+.+|+++|++|||||||+|+|.+.. ...+.+.+|++..... +...+ .+.+|||||+....... ........+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3467899999999999999999999876 3445566676654322 22223 78999999986422111 011112223
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcCCCCC
Q 020714 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPGYE 290 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 290 (322)
...+.....++.+++++|++.+.+..+..+..++... +.|+++|+||+|+...... .......+.+.....
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3333444678999999999776544333444555432 3568999999998764321 122222233222233
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.++++||+++.|+++++++|.+.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 57899999999999999999988754
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.76 E-value=2.8e-18 Score=164.05 Aligned_cols=161 Identities=15% Similarity=0.259 Sum_probs=104.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe----e--eeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK----V--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK 210 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~----~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 210 (322)
...++|+++|.+|+|||||+|+|++.. . .......|.|.+.....+...+..+.+|||||+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~----------- 85 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD----------- 85 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-----------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-----------
Confidence 357899999999999999999999865 1 12233445555443333445678899999999753
Q ss_pred HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHH-HHHhcC-
Q 020714 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA-EQFKHL- 286 (322)
Q Consensus 211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~-~~~~~~- 286 (322)
....+...+..+|++++|+|++++...+......++..+ +.|.++|+||+|+..... ...+.. ..+...
T Consensus 86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~ 158 (482)
T 1wb1_A 86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH 158 (482)
T ss_dssp -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS
T ss_pred -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc
Confidence 234455667889999999999776444333333333332 356899999999986321 111222 222221
Q ss_pred -CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 287 -PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 287 -~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+...+++++||++|+|+++|+++|.+.+.
T Consensus 159 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 159 NLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 11347999999999999999999999764
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=4e-18 Score=151.55 Aligned_cols=169 Identities=16% Similarity=0.223 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecC-------CCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCC-hh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS-HK 207 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~-~~ 207 (322)
..++|+++|.+|+|||||+|+|++........ .++++.......+...+. .+.+|||||+........ ..
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999998876543332 223333333333333343 789999999965432211 11
Q ss_pred hH----HHHHHHHHhh----------cccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 208 DV----KVRVESAWSA----------VNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 208 ~~----~~~~~~~~~~----------~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.+ ...+...+.. -..+|+++++++.+.+. ...+ ..+++.+.. .+|+++|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d---~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD---IEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH---HHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH---HHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 11 1222333332 12367899999775532 2222 234444443 5789999999999764
Q ss_pred hhHH---HHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 273 KKDL---LKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 273 ~~~~---~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.+.. ......+.. .+. +++++||++|+|+++++++|.+.+.
T Consensus 160 ~e~~~~~~~i~~~l~~-~~i-~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQE-HKI-KIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHH-TTC-CCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHH-cCC-eEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3211 122222322 344 5899999999999999999988653
No 147
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=154.72 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=61.9
Q ss_pred cccEEEEEEeCCCC--CCCcHHHHHHHHHHhccc-CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC-CCCCcEEEeec
Q 020714 222 LFEVLMVVFDVHRH--LTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-PGYERIFMTSG 297 (322)
Q Consensus 222 ~ad~ii~v~D~s~~--~~~~~~~~~~~l~~~~~~-~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~iSa 297 (322)
.+|++|+|||+++. .+. ..+..|+..+... ...+.|+++|+||+|+...... .....+... .+. ++++|||
T Consensus 162 ~ad~vilV~D~t~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~-~~~e~SA 236 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF--DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNL-QVVETSA 236 (255)
T ss_dssp ECCEEEEEEECBC----CH--HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSC-CEEECBT
T ss_pred cCCEEEEEEECCCCchhhH--HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCC-eEEEEEC
Confidence 68999999999775 333 3344555554322 1235789999999999654332 234444443 344 6999999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 020714 298 LKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 298 ~~g~gi~el~~~i~~~l~ 315 (322)
++|.|++++|++|.+.+.
T Consensus 237 k~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 237 RSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998764
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.76 E-value=6.6e-18 Score=141.90 Aligned_cols=162 Identities=21% Similarity=0.238 Sum_probs=105.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCc--cEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|++|||||||++++.+........ +..+.+...+.+...+. .+.+|||||+..+.....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~--------- 96 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITS--------- 96 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhH---------
Confidence 346899999999999999999999876543222 22222233333444554 456799999876533111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (322)
..+..++++++|+|.....+. ..+..|+..+........|+++|+||+|+.............+....+. .++.
T Consensus 97 ---~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld 170 (191)
T 1oix_A 97 ---AYYRGAVGALLVYDIAKHLTY--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIE 170 (191)
T ss_dssp ---HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred ---HHhhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 234567899999998653221 1233444444332233578999999999975332222334444444444 5899
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 020714 295 TSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 295 iSa~~g~gi~el~~~i~~~l 314 (322)
+||+++.|+++++++|.+.+
T Consensus 171 ~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.76 E-value=1.2e-17 Score=156.79 Aligned_cols=164 Identities=16% Similarity=0.288 Sum_probs=106.1
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEEee------------------C-----CccEE
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTK------------------A-----DTQIC 190 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~~~------------------~-----~~~~~ 190 (322)
....++|+++|.+|+|||||+++|++.... ......|.|.......... + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345789999999999999999999865322 1122344454332211111 0 15689
Q ss_pred EEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-cHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269 (322)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl 269 (322)
||||||+..+ ...++..+..+|++|+|+|++++... +.......+..++ ..|+++|+||+|+
T Consensus 87 iiDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl 149 (410)
T 1kk1_A 87 FIDAPGHEAL------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIEL 149 (410)
T ss_dssp EEECSSHHHH------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGG
T ss_pred EEECCChHHH------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccC
Confidence 9999997532 33445567788999999999876422 2223333444433 2469999999999
Q ss_pred CCChh---HHHHHHHHHhcC-CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 270 VTKKK---DLLKVAEQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 270 ~~~~~---~~~~~~~~~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..... ..++....+... ....+++++||++|.|+++|+++|.+.+..
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 87532 122222333221 123479999999999999999999987653
No 150
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.75 E-value=7.4e-18 Score=163.51 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=99.3
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeee-ecCCCCceeeeEEE----EEe----eCCccEEEEeCCCcccCCCCCCh
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLG----VMT----KADTQICIFDTPGLMLNKSGYSH 206 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~-~~~~~~~t~~~~~~----~~~----~~~~~~~l~DtpG~~~~~~~~~~ 206 (322)
....++|+++|.+|||||||+|++++..+.. ..++.+.+...... .+. ..+..+.+|||||...+.....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~- 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ- 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH-
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH-
Confidence 4567999999999999999999999876431 11222222211100 000 1246799999999765543111
Q ss_pred hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC
Q 020714 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (322)
Q Consensus 207 ~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (322)
..+..+|++++|+|+++. + ....|+..+.... ++.|+++|+||+|+........+........
T Consensus 117 -----------~~l~~~d~ii~V~D~s~~--~---~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~ 179 (535)
T 3dpu_A 117 -----------FFMTRSSVYMLLLDSRTD--S---NKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPA 179 (535)
T ss_dssp -----------HHHHSSEEEEEEECGGGG--G---GHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG
T ss_pred -----------HHccCCcEEEEEEeCCCc--h---hHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHh
Confidence 124568999999999642 2 2334444444322 2578999999999986544333334444444
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.+. +++++||++|.||++++++|.+.+...
T Consensus 180 ~~~-~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 180 IEN-RFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp GTT-CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred cCC-ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 454 599999999999999999999988764
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=2.1e-17 Score=155.01 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=98.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee--ecCCCCceeeeEEEEEee---------------C--------CccEEE
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTK---------------A--------DTQICI 191 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~~~l 191 (322)
...++|+++|.+++|||||+++|++..... .....|.|.......... . ...+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356899999999999999999998653221 122234444322111100 1 157899
Q ss_pred EeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH-HHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~-~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
|||||+..+ ....+..+..+|++++|+|++++..... ......+..++ ..|+++|+||+|+.
T Consensus 86 iDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~-----~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 86 VDSPGHETL------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG-----IDKIIIVQNKIDLV 148 (408)
T ss_dssp EECSSHHHH------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECTTSS
T ss_pred EECCCHHHH------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC-----CCeEEEEEEccCCC
Confidence 999997532 3345566788899999999987542222 22333333332 24699999999998
Q ss_pred CChh---HHHHHHHHHhcC-CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 271 TKKK---DLLKVAEQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 271 ~~~~---~~~~~~~~~~~~-~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
.... ..++....+... ....+++++||++|+|+++|+++|.+.+..
T Consensus 149 ~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 149 DEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp CTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 6532 233333333321 123479999999999999999999987754
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=1.6e-19 Score=173.48 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=107.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee-CCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
+++++|+++|.+|+|||||+|+|.+..+... ..+++|.+.....+.. .+..+.||||||+..+.....
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~---------- 70 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA---------- 70 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence 3578899999999999999999987665433 3455554433222222 456899999999876644221
Q ss_pred HHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHHHHH---h-cCCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQF---K-HLPGYE 290 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~---~-~~~~~~ 290 (322)
..+..+|++++|+|++++...+.. ..+..+... +.|+++|+||+|+..... ......... . ...+..
T Consensus 71 --~~~~~aD~vILVVDa~dg~~~qt~---e~l~~~~~~---~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 71 --RGTQVTDIVILVVAADDGVMKQTV---ESIQHAKDA---HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp --SSSBSBSSCEEECBSSSCCCHHHH---HHHHHHHTT---TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred --HHHccCCEEEEEEECCCCccHHHH---HHHHHHHHc---CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 346778999999999875544333 333333332 467999999999975321 111111111 1 111234
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
+++++||++|.|+++|+++|...+..
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCchhHHHHHHHhhhc
Confidence 78999999999999999999988653
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=2.6e-18 Score=165.59 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe------------------ee---eecCCCCceeeeEEEEEeeCCccEEEEeCCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK------------------VA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~------------------~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG 196 (322)
+..+|+|+|.+|+|||||+|+|+... .. ......|.|.......+...+..+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46789999999999999999996210 00 0111234455444455666788999999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+..+.. .+...+..+|++|+|+|++.+...+...+...+ ... +.|+++|+||+|+...
T Consensus 92 ~~df~~------------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~---~~~---~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTE------------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC---RLR---HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCH------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH---HTT---TCCEEEEEECTTSCCS
T ss_pred chhHHH------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc
Confidence 976532 244567889999999999876554443333333 222 4679999999999754
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.75 E-value=4.6e-18 Score=162.91 Aligned_cols=153 Identities=17% Similarity=0.218 Sum_probs=97.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCe------------------------------eeeecCCCCceeeeEEEEEeeC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK------------------------------VAAVSRKTNTTTHEVLGVMTKA 185 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~------------------------------~~~~~~~~~~t~~~~~~~~~~~ 185 (322)
....++|+++|.+|+|||||+|+|++.. ........|.|.+.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3467999999999999999999997531 0111223466766666556667
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-------cHHHHHHHHHHhcccCCCCC
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQ 258 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-------~~~~~~~~l~~~~~~~~~~~ 258 (322)
+..+.||||||+..+ ...+...+..+|++|+|+|++.+..+ +.......+..++ ..
T Consensus 110 ~~~~~iiDTPG~~~f------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~ 172 (483)
T 3p26_A 110 RANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IH 172 (483)
T ss_dssp SCEEEEECCCCCGGG------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CC
T ss_pred CceEEEEECCCcHHH------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CC
Confidence 889999999999753 33444567889999999999775322 1222223333322 23
Q ss_pred cEEEEEeCCCCCCChh-HHHH---HHHHHhcCCC----CCcEEEeecCCCCCHHH
Q 020714 259 KRVLCMNKVDLVTKKK-DLLK---VAEQFKHLPG----YERIFMTSGLKGAGLKA 305 (322)
Q Consensus 259 p~ivV~NK~Dl~~~~~-~~~~---~~~~~~~~~~----~~~~~~iSa~~g~gi~e 305 (322)
|+|+|+||+|+..... ..++ ....+....+ ..+++++||++|+|+++
T Consensus 173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 5999999999986422 2222 2222211111 23689999999999985
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.74 E-value=5e-18 Score=159.21 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=107.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC--------eeeee--------cCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT--------KVAAV--------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~--------~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
...++|+++|.+|+|||||+|+|++. .+... ....|.|.+.....+...+..+.||||||+..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999999863 11000 012355655544445556788999999998753
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHH---
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL--- 276 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~--- 276 (322)
...+...+..+|++|+|+|++++...+.......+... +.| +++|+||+|+.......
T Consensus 89 ------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~ 150 (405)
T 2c78_A 89 ------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLV 150 (405)
T ss_dssp ------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHH
T ss_pred ------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHH
Confidence 23344556789999999999876544333333333332 356 88999999998533222
Q ss_pred HHHHHHHhcCCC----CCcEEEeecCCCCC------------------HHHHHHHHHHHhh
Q 020714 277 LKVAEQFKHLPG----YERIFMTSGLKGAG------------------LKALTQYLMEQFK 315 (322)
Q Consensus 277 ~~~~~~~~~~~~----~~~~~~iSa~~g~g------------------i~el~~~i~~~l~ 315 (322)
......+....+ ..+++++||++|.| +++|+++|.+.+.
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 222233332233 24799999999987 8899999888765
No 156
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.74 E-value=6.2e-17 Score=161.08 Aligned_cols=167 Identities=21% Similarity=0.265 Sum_probs=109.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEE---------EEEe------------------eCC--
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---------GVMT------------------KAD-- 186 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~---------~~~~------------------~~~-- 186 (322)
....++|+|+|.+|+|||||+|+|++..+..++..++|...... .... ..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45789999999999999999999999887777766665211000 0000 000
Q ss_pred ----------------------------ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC
Q 020714 187 ----------------------------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 238 (322)
Q Consensus 187 ----------------------------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~ 238 (322)
..+.||||||+..... ....+...+..+|++++|+|++.+.+.
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~---------~~~~~~~~i~~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA---------RNELSLGYVNNCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT---------CHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh---------HHHHHHHHHHhCCEEEEEEeCCCccch
Confidence 4799999999874211 123445567889999999999776554
Q ss_pred cHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh----h---HHH----HH----HHHHhcCC-------CCCcEEEee
Q 020714 239 PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----K---DLL----KV----AEQFKHLP-------GYERIFMTS 296 (322)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----~---~~~----~~----~~~~~~~~-------~~~~~~~iS 296 (322)
.+.. .+...+... +.|+++|+||+|+.... . ... .. ...+.... ...++++||
T Consensus 217 ~e~~--~l~~~l~~~---~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vS 291 (695)
T 2j69_A 217 GERR--YLENYIKGR---GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELS 291 (695)
T ss_dssp HHHH--HHHHHTTTS---CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECC
T ss_pred hHHH--HHHHHHHhh---CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEe
Confidence 3322 222333322 45799999999986542 1 111 11 11222211 123699999
Q ss_pred cC--------------CCCCHHHHHHHHHHHhhh
Q 020714 297 GL--------------KGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 297 a~--------------~g~gi~el~~~i~~~l~~ 316 (322)
|+ +|.|+++++++|.+.+..
T Consensus 292 Ak~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 292 SIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 99 999999999999988754
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.74 E-value=1.4e-17 Score=155.80 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCee-------e--------eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKV-------A--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~-------~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
..++|+++|.+|+|||||+++|++... . ......|.|.+.....+...+..+.||||||+..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY-- 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH--
Confidence 357999999999999999999986310 0 01113455555444444456788999999998632
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhH---HHH
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKD---LLK 278 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~---~~~ 278 (322)
...+...+..+|++|+|+|++++...+.......+... +.| +++|+||+|+...... ...
T Consensus 80 ----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~ 143 (397)
T 1d2e_A 80 ----------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVEL 143 (397)
T ss_dssp ----------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred ----------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHH
Confidence 23445567899999999999876543333333333332 356 6899999999853322 122
Q ss_pred HHHHHhcCCC----CCcEEEeecCCCCC----------HHHHHHHHHHHhhh
Q 020714 279 VAEQFKHLPG----YERIFMTSGLKGAG----------LKALTQYLMEQFKD 316 (322)
Q Consensus 279 ~~~~~~~~~~----~~~~~~iSa~~g~g----------i~el~~~i~~~l~~ 316 (322)
....+....+ ..+++++||++|.| +++|+++|.+.+..
T Consensus 144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2233333233 24799999999875 89999999987753
No 158
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=9.5e-18 Score=151.82 Aligned_cols=176 Identities=16% Similarity=0.231 Sum_probs=100.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCee-----eeecCCCC---ceeee-------------------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKTN---TTTHE------------------------------- 177 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~-----~~~~~~~~---~t~~~------------------------------- 177 (322)
...++|+|+|.+|||||||+|+|++..+ ..+...++ +++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3567899999999999999999999875 22222331 11110
Q ss_pred --------------------EEEEEeeCCccEEEEeCCCcccCCC-CCChhhHHHHHHHHHhhcccccEEEEEEeCC-CC
Q 020714 178 --------------------VLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH-RH 235 (322)
Q Consensus 178 --------------------~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s-~~ 235 (322)
...+....+..+.||||||+..... ..+..........+...+..+|++++|+|.+ .+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0001222456899999999964211 1111112223444556678899999999973 33
Q ss_pred CCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcC--CCCCcEEEeecCC---CCCHHHHHHHH
Q 020714 236 LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLK---GAGLKALTQYL 310 (322)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iSa~~---g~gi~el~~~i 310 (322)
....+. ..++..+... +.|+++|+||+|+........+........ .++.+++.+|+.+ |.|++++++.+
T Consensus 182 ~~~~~~--~~i~~~~~~~---~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDA--LQLAKEVDPE---GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSH--HHHHHHHCSS---CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHH--HHHHHHhCCC---CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 332321 1333333332 568999999999986543222222210011 1222344455555 89999999999
Q ss_pred HHHhhhc
Q 020714 311 MEQFKDL 317 (322)
Q Consensus 311 ~~~l~~~ 317 (322)
.+.+...
T Consensus 257 ~~~~~~~ 263 (315)
T 1jwy_B 257 ILYFKNH 263 (315)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 9888653
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.74 E-value=2.8e-17 Score=152.01 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=100.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (322)
+|+++|.+|+|||||+++|+ ..+.|.+.....+...+..+.||||||+..+ ...+...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f------------~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT------------LKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC------------HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH------------HHHHHHHH
Confidence 89999999999999999998 2233444444445556778999999998754 22334456
Q ss_pred ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE-EEEEe-CCCCCCChhH--HHHHHHHHhcCCC--CCcEEE
Q 020714 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMN-KVDLVTKKKD--LLKVAEQFKHLPG--YERIFM 294 (322)
Q Consensus 221 ~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~-ivV~N-K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~ 294 (322)
..+|++++|+| ..+...+.......+..+ +.|. ++|+| |+|+ ..... ..+....+....+ ..++++
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 78899999999 655433333333333333 2456 89999 9999 43211 1123333333322 247999
Q ss_pred --eecCC---CCCHHHHHHHHHHHhh
Q 020714 295 --TSGLK---GAGLKALTQYLMEQFK 315 (322)
Q Consensus 295 --iSa~~---g~gi~el~~~i~~~l~ 315 (322)
+||++ |.|+++|+++|.+.+.
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhcc
Confidence 99999 9999999999998765
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=2.9e-17 Score=155.35 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=97.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee----------eecCC----------------------CCceeeeEEEEEee
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA----------AVSRK----------------------TNTTTHEVLGVMTK 184 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~----------~~~~~----------------------~~~t~~~~~~~~~~ 184 (322)
...++|+++|.+|+|||||+|+|++.... ..+.. .|.|.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999754210 01111 23344433334445
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+..+.||||||+..+. ......+..+|++|+|+|++++...+.......+..++ ..|+++|+
T Consensus 102 ~~~~~~iiDtpGh~~f~------------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~-----~~~iIvvi 164 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYT------------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLG-----IKHIVVAI 164 (434)
T ss_dssp SSEEEEEEECCCSGGGH------------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEE
T ss_pred CCceEEEEECCChHHHH------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEE
Confidence 67789999999987531 22234568899999999998765433333333333332 23599999
Q ss_pred eCCCCCCCh-hH---HHHHHHHHhcCCC----CCcEEEeecCCCCCHHHH
Q 020714 265 NKVDLVTKK-KD---LLKVAEQFKHLPG----YERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 265 NK~Dl~~~~-~~---~~~~~~~~~~~~~----~~~~~~iSa~~g~gi~el 306 (322)
||+|+.... .. .......+....+ ..+++++||++|.|++++
T Consensus 165 NK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 165 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred EcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 999998632 21 2223334434444 146899999999999983
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=163.51 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=101.2
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec------------------------------CCCCceeeeEEEEEeeC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS------------------------------RKTNTTTHEVLGVMTKA 185 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~ 185 (322)
....++|+++|.+|+|||||+|+|++....... ...|+|.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 355789999999999999999999865321111 02466766555556667
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC-------CCCcHHHHHHHHHHhcccCCCCC
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQ 258 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~-------~~~~~~~~~~~l~~~~~~~~~~~ 258 (322)
+..+.||||||+..+ ...+...+..+|++|+|+|++.+ ...+.......+..++ ..
T Consensus 244 ~~~~~iiDTPG~e~f------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-----i~ 306 (611)
T 3izq_1 244 RANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IH 306 (611)
T ss_dssp SCEEEEEECCSSSCH------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----CC
T ss_pred CceEEEEECCCCccc------------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----CC
Confidence 889999999998642 45566778999999999999653 1122222222222222 23
Q ss_pred cEEEEEeCCCCCCChh-HHH---HHHHHHhcCCC----CCcEEEeecCCCCCHHHH
Q 020714 259 KRVLCMNKVDLVTKKK-DLL---KVAEQFKHLPG----YERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 259 p~ivV~NK~Dl~~~~~-~~~---~~~~~~~~~~~----~~~~~~iSa~~g~gi~el 306 (322)
|+|+|+||+|+..... ... .....+....+ ..++++|||++|.|++++
T Consensus 307 ~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 307 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred eEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 5999999999986322 111 12222221112 237999999999999876
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=5.1e-17 Score=158.08 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--ee------e------ecCCCCceeeeEEEEEee---C--CccEEEEeCCCcc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA------A------VSRKTNTTTHEVLGVMTK---A--DTQICIFDTPGLM 198 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--~~------~------~~~~~~~t~~~~~~~~~~---~--~~~~~l~DtpG~~ 198 (322)
+..+|+++|.+|+|||||+++|+... +. . .....|.|.......+.. + ...+.||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 46789999999999999999997521 10 0 011123333221111211 2 2567899999998
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 278 (322)
.+.. .....+..+|++++|+|++++...+.......... .+.|+++|+||+|+.... ...
T Consensus 85 dF~~------------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~ 144 (600)
T 2ywe_A 85 DFSY------------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDR 144 (600)
T ss_dssp GGHH------------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHH
T ss_pred hHHH------------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHH
Confidence 6421 12233567899999999987654433322222221 256799999999997643 333
Q ss_pred HHHHHhcCCCCC--cEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 279 VAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 279 ~~~~~~~~~~~~--~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
....+.+..+.. +++++||++|.|+++++++|.+.+..
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 445555555543 58999999999999999999998864
No 163
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=1.2e-17 Score=153.85 Aligned_cols=171 Identities=22% Similarity=0.313 Sum_probs=100.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee-----eecCCCC----------------------ceee-------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTH------------- 176 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-----~~~~~~~----------------------~t~~------------- 176 (322)
...++|+|+|.+|||||||+|+|++..+. .+...|+ +|++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999998764 2222232 1111
Q ss_pred ----------e-EEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH-hhc-ccccEEEEEEeCCCCCCCcHHHH
Q 020714 177 ----------E-VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW-SAV-NLFEVLMVVFDVHRHLTSPDSRV 243 (322)
Q Consensus 177 ----------~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-~~~-~~ad~ii~v~D~s~~~~~~~~~~ 243 (322)
. ........+..+.||||||+...............+.... .++ ...+++++|+|++......+ .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--A 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH--H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH--H
Confidence 0 0111112256899999999975322111122212222222 222 44567777778755333332 3
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH--HhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ--FKHLPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 244 ~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
..+++.+... +.|+++|+||+|+............. +....+..+++++||++|.|++++++++.+
T Consensus 187 ~~i~~~~~~~---~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTT---CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcC---CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3455555433 57899999999998653322221111 011123346789999999999999999876
No 164
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.71 E-value=5.7e-17 Score=158.04 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--ee------e------ecCCCCceeeeEEEEEee---C--CccEEEEeCCCcc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA------A------VSRKTNTTTHEVLGVMTK---A--DTQICIFDTPGLM 198 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--~~------~------~~~~~~~t~~~~~~~~~~---~--~~~~~l~DtpG~~ 198 (322)
+..+|+++|.+|+|||||+++|+... .. . .....|.|.......+.+ + +..+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999997521 10 0 011223443322222222 1 3578899999997
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHH
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 278 (322)
.+. ......+..+|++++|+|++++...+.......... .+.|+++|+||+|+.... ...
T Consensus 83 dF~------------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~--~~~ 142 (599)
T 3cb4_D 83 DFS------------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD--PER 142 (599)
T ss_dssp GGH------------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHH
T ss_pred HHH------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc--HHH
Confidence 542 112234567899999999988766554433222222 146899999999998653 222
Q ss_pred HHHHHhcCCCC--CcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 279 VAEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 279 ~~~~~~~~~~~--~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
....+.+..+. .+++++||++|.|+++++++|.+.+..
T Consensus 143 v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 143 VAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 23333333333 258999999999999999999998764
No 165
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=150.37 Aligned_cols=154 Identities=15% Similarity=0.217 Sum_probs=90.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce------------------------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT------------------------------------ 174 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t------------------------------------ 174 (322)
.....|+|+|+||||||||+|+|++ .++......+++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 4478999999999999999999985 2333333222211
Q ss_pred -eeeEEEE--EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhc
Q 020714 175 -THEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251 (322)
Q Consensus 175 -~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~ 251 (322)
++..... +...+..+.|+||||+... . ......+|++++|+|++.+... ..+.. .+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~------~---------~~l~~~~d~vl~V~d~~~~~~~--~~i~~---~i- 210 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS------E---------FAVADMVDMFVLLLPPAGGDEL--QGIKR---GI- 210 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C------H---------HHHHTTCSEEEEEECCC------------------
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh------h---------hhHHhhCCEEEEEEcCCcchhH--HHhHH---HH-
Confidence 1000000 0125678899999997532 1 1124578999999999653211 11111 11
Q ss_pred ccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 252 KQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 252 ~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
-..|.++|+||+|+..... ........+... .+.++++++||++|.|+++|+++|.+.+.
T Consensus 211 ----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 211 ----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ----CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1346899999999964321 111122222211 12357899999999999999999998764
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.70 E-value=5.7e-17 Score=153.30 Aligned_cols=152 Identities=17% Similarity=0.260 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC--eeee----------------------------ecCCCCceeeeEEEEEeeCCc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAA----------------------------VSRKTNTTTHEVLGVMTKADT 187 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~--~~~~----------------------------~~~~~~~t~~~~~~~~~~~~~ 187 (322)
..++|+++|.+|+|||||+++|+.. .+.. .....|.|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 5689999999999999999999753 1110 011345565554444556678
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC-------CCCcHHHHHHHHHHhcccCCCCCcE
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQKR 260 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~-------~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (322)
.+.||||||+..+ ...+...+..+|++|+|+|++++ ...+.......+..++ ..++
T Consensus 85 ~~~iiDtpG~~~f------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~-----~~~i 147 (435)
T 1jny_A 85 FFTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQL 147 (435)
T ss_dssp EEEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTC
T ss_pred EEEEEECCCcHHH------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC-----CCeE
Confidence 8999999998753 22344567899999999999774 2222223333333332 1358
Q ss_pred EEEEeCCCCCCC---hh---HHHHHHHHHhcCCC----CCcEEEeecCCCCCHHHH
Q 020714 261 VLCMNKVDLVTK---KK---DLLKVAEQFKHLPG----YERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 261 ivV~NK~Dl~~~---~~---~~~~~~~~~~~~~~----~~~~~~iSa~~g~gi~el 306 (322)
++|+||+|+... .. ...+....+....+ ..+++++||++|+|+.++
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999999999863 11 12222333333233 246999999999999854
No 167
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.70 E-value=3.8e-18 Score=166.75 Aligned_cols=162 Identities=18% Similarity=0.237 Sum_probs=87.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeee------------------------------ecCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 186 (322)
...++|+++|.+|+|||||+|+|++..... ....+|+|.+.....+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456899999999999999999996421100 11134666666555555567
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC-------CCcHHHHHHHHHHhcccCCCCCc
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQK 259 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~-------~~~~~~~~~~l~~~~~~~~~~~p 259 (322)
..+.||||||+..+... +...+..+|++|+|+|++.+. ..+.......+..++. .+
T Consensus 255 ~~i~iiDTPGh~~f~~~------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi-----p~ 317 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI-----SE 317 (592)
T ss_dssp ----CCEEESSSEEEEE------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC-----CC
T ss_pred eEEEEEECCChHHHHHH------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----Ce
Confidence 88999999999865432 223456789999999997643 3333344444444331 13
Q ss_pred EEEEEeCCCCCCC-hhHHH---HHHHHHh-cCCCCC----cEEEeecCCCCCHH--------------HHHHHHHHHhh
Q 020714 260 RVLCMNKVDLVTK-KKDLL---KVAEQFK-HLPGYE----RIFMTSGLKGAGLK--------------ALTQYLMEQFK 315 (322)
Q Consensus 260 ~ivV~NK~Dl~~~-~~~~~---~~~~~~~-~~~~~~----~~~~iSa~~g~gi~--------------el~~~i~~~l~ 315 (322)
+|+|+||+|+... ..... .....+. ...++. +++++||++|.||. +|++.|...+.
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 8999999999763 22222 2223333 333442 68999999999998 78888876543
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.70 E-value=3.8e-18 Score=162.69 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=103.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
+++++|+++|.+|+|||||+++|.+..+. ....+|.|.+.....+...+..+.||||||+..+....
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~------------ 68 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR------------ 68 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH------------
Confidence 46788999999999999999999875433 22234444332222233456789999999998765422
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-HHHHHH---HHHhcCC-CCCc
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVA---EQFKHLP-GYER 291 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~~~~~~---~~~~~~~-~~~~ 291 (322)
...+..+|++++|+|++++...+.......+.. . +.|+++++||+|+..... ...... ..+...+ +..+
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~---~---~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~ 142 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA---A---QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQ 142 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH---T---TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCE
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh---c---CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCcc
Confidence 134678899999999987654444333333332 2 467999999999975321 110000 0011111 2247
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~ 313 (322)
++++||++|.|+++|+++|...
T Consensus 143 ~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 143 FVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EEECCTTTCTTCTTHHHHTTTT
T ss_pred EEEEeeeeccCcchhhhhhhhh
Confidence 9999999999999999998754
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=1.6e-16 Score=155.03 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=100.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee------------------CCccEEEEeCCCcc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------ADTQICIFDTPGLM 198 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~l~DtpG~~ 198 (322)
.+.++|+++|.+|+|||||+++|++..+..... .+.|.+........ ....+.||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 356899999999999999999998764422111 12222111111110 11248999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh-----
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----- 273 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~----- 273 (322)
.+..... ..+..+|++|+|+|++++...+......++.. .+.|+++|+||+|+....
T Consensus 82 ~F~~~~~------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 82 AFTTLRK------------RGGALADLAILIVDINEGFKPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CCTTSBC------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTT
T ss_pred HHHHHHH------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH------cCCeEEEEecccccccccccccC
Confidence 7644221 24577899999999987654333333333332 256799999999996421
Q ss_pred -----------hH----H----HHHHHHHhcC-------------CCCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 274 -----------KD----L----LKVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 274 -----------~~----~----~~~~~~~~~~-------------~~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
.. . .+....+... ....+++++||++|.|+++|+++|...+.
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 0 0111222211 12237999999999999999999998765
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2.4e-17 Score=140.94 Aligned_cols=121 Identities=13% Similarity=0.213 Sum_probs=75.8
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeec--CCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 213 (322)
....++|+++|++|||||||+|+|.+..+.... ..+.++. ...+..+.+|||||+..+.. .....+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~-----~~~~~~ 76 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRY-----KLSDYL 76 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCGGGTH-----HHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcHHHHH-----HHHHHH
Confidence 346789999999999999999999987643221 1121111 12467889999999975421 111111
Q ss_pred HHHHhhcccccEEEEEEeCC-CCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEeCCCCCCCh
Q 020714 214 ESAWSAVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKK 273 (322)
Q Consensus 214 ~~~~~~~~~ad~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~----~~~~~p~ivV~NK~Dl~~~~ 273 (322)
. .....+|++++|+|++ +..+... ...++..+... ...+.|+++|+||+|+....
T Consensus 77 ~---~~~~~~~~~i~v~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 77 K---TRAKFVKGLIFMVDSTVDPKKLTT--TAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp H---HHGGGEEEEEEEEETTSCTTCCHH--HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred H---hccccCCEEEEEEECCCChHHHHH--HHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 1 1224479999999997 4333322 33333333211 22467899999999998754
No 171
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.1e-16 Score=143.55 Aligned_cols=125 Identities=22% Similarity=0.376 Sum_probs=88.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
....+|+++|.||||||||+|+|++.+ ..+++.+++|.++..+.+...+..+.|+||||+..... .......++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-----~~~~~g~~~ 143 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-----DGRGRGKQV 143 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC----------CHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-----hhhHHHHHH
Confidence 345689999999999999999999976 56788899999999999989999999999999975321 122234667
Q ss_pred HhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q 020714 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl 269 (322)
+..++.||++++|+|++++... ...+...+..+... ....|.++++||+|.
T Consensus 144 l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 144 IAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIR-LNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEE-ETCCCCCEEEEECSS
T ss_pred HHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHh-hccCChhhhhhHhhh
Confidence 7888999999999999653211 11222233333221 123456677777775
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.69 E-value=6.7e-16 Score=136.23 Aligned_cols=133 Identities=23% Similarity=0.231 Sum_probs=92.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (322)
....++|+++|.+|||||||+|+|++.....+...+++|.......+...+..+.||||||+..+.... ......+.+
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~~~~~~i~~ 110 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--HQALELIKG 110 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--HHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--HHHHHHHHH
Confidence 346799999999999999999999998877777778888777776677788899999999998764311 112222222
Q ss_pred HHhhcccccEEEEEEeCCCCCCC-cHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 216 AWSAVNLFEVLMVVFDVHRHLTS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 216 ~~~~~~~ad~ii~v~D~s~~~~~-~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.+ ....+|++++|+|++..... .+..+...+....... ...|+++|+||+|+...
T Consensus 111 ~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 111 FL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCCS
T ss_pred HH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCCC
Confidence 22 23478999999988653322 2234555555543221 12479999999999643
No 173
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=4.2e-17 Score=151.99 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=49.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---------------------C---CccEEEEeCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------A---DTQICIFDTP 195 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~l~Dtp 195 (322)
++|+++|.||||||||+|+|++.. ..++..+++|.....+.... . ...+.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999987 66778888887766654211 1 2468999999
Q ss_pred CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC
Q 020714 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (322)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~ 235 (322)
|+..... .........+..++.+|++++|+|+++.
T Consensus 80 G~~~~a~-----~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAH-----EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchh-----hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9974321 0011123445667999999999999764
No 174
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.68 E-value=9.2e-16 Score=135.96 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=90.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (322)
...++|+++|.+|+|||||+|+|++..+..++..+++|...........+..+.+|||||+..+.... ......+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~--~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN--DMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC--HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch--HHHHHHHHHH
Confidence 45799999999999999999999998877777778888776666666778899999999998653211 1111222221
Q ss_pred HhhcccccEEEEEEeCCCCC-CCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 217 WSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 217 ~~~~~~ad~ii~v~D~s~~~-~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.....+|++++|+|++... ...+..+...+....... ...|+++|+||+|+...
T Consensus 115 -~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 -LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp -TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred -hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCc
Confidence 2245789999999986532 222224444443331111 12579999999999764
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.68 E-value=2.4e-16 Score=160.84 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=106.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCee----------e-----eecCCCCceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV----------A-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~~----------~-----~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
....++|+++|.+|+|||||+++|++... . ......|.|.+.....+...+..+.||||||+..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34578999999999999999999986310 0 01123344544333334455788999999998642
Q ss_pred CCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEeCCCCCCChhHH---
Q 020714 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL--- 276 (322)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ivV~NK~Dl~~~~~~~--- 276 (322)
...+...+..+|++|+|+|++++...+.......+... ++| +|+|+||+|+.......
T Consensus 373 ------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i 434 (1289)
T 3avx_A 373 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELV 434 (1289)
T ss_dssp ------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHH
T ss_pred ------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHH
Confidence 33445667899999999999887655554444444432 356 78999999998643221
Q ss_pred HHHHHHHhcCCC----CCcEEEeecCCC--------CCHHHHHHHHHHHhh
Q 020714 277 LKVAEQFKHLPG----YERIFMTSGLKG--------AGLKALTQYLMEQFK 315 (322)
Q Consensus 277 ~~~~~~~~~~~~----~~~~~~iSa~~g--------~gi~el~~~i~~~l~ 315 (322)
......+....+ ..+++++||++| .|+++|+++|.+.+.
T Consensus 435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 435 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 222333332223 247999999999 579999999988664
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.68 E-value=5.5e-16 Score=144.86 Aligned_cols=164 Identities=27% Similarity=0.415 Sum_probs=110.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-ccEEEEeCCCcccCCC---CCChhhHHHHHH
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKS---GYSHKDVKVRVE 214 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~---~~~~~~~~~~~~ 214 (322)
...|+++|++|||||||+|+|++... .+...+.+|.....+.+...+ ..+.++||||+..... ....
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~-------- 227 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL-------- 227 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH--------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH--------
Confidence 45689999999999999999998753 455666777776666665554 7899999999864311 1111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcE
Q 020714 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~--~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
..+..+..++.+++++|++ ......+..+.+++.... ....|.++|+||+|+... .........+.. .+. ++
T Consensus 228 ~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~-~g~-~v 301 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAR-EGL-AV 301 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHT-TTS-CE
T ss_pred HHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHh-cCC-eE
Confidence 1223456789999999996 222222222222222110 113679999999999764 333333344332 343 59
Q ss_pred EEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 293 FMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 293 ~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+++||++++|+++|+++|.+.+...
T Consensus 302 i~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 302 LPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEEECCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.67 E-value=7.4e-16 Score=141.89 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=95.7
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeeeE-----------------EEE---------
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHEV-----------------LGV--------- 181 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~~-----------------~~~--------- 181 (322)
+.....++|+++|.||||||||+++|. +.++..+...++.+.... ...
T Consensus 74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence 334567899999999999999999985 334333333332221000 000
Q ss_pred -------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (322)
Q Consensus 182 -------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~ 248 (322)
+...+..+.|+||||+... . ...+..+|++++|+|........ .+
T Consensus 154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-------~--------~~~~~~aD~vl~V~d~~~~~~~~--~l----- 211 (355)
T 3p32_A 154 GGVTRATRETVVLLEAAGFDVILIETVGVGQS-------E--------VAVANMVDTFVLLTLARTGDQLQ--GI----- 211 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH-------H--------HHHHTTCSEEEEEEESSTTCTTT--TC-----
T ss_pred cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-------H--------HHHHHhCCEEEEEECCCCCccHH--HH-----
Confidence 0124678999999997531 1 12247789999999985432211 11
Q ss_pred HhcccCCCCCcEEEEEeCCCCCCChhH---HHHHHHHHhcC-----CCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 249 RMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~---~~~~~~~~~~~-----~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
. ......|+++|+||+|+...... ..+....+... .+..+++++||++|.|+++++++|.+.+..
T Consensus 212 --~-~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 212 --K-KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp --C-TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred --H-HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1 11113579999999998653221 11111221111 123479999999999999999999988754
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.67 E-value=2.5e-17 Score=156.61 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe--ee----------------------------eecCCCCceeeeEEEEEeeCCc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKADT 187 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~--~~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 187 (322)
..++|+++|.+|+|||||+|+|++.. +. ......|.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999997531 10 0001245555544444556677
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCC-------cHHHHHHHHHHhcccCCCCCc-
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQK- 259 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~-------~~~~~~~~l~~~~~~~~~~~p- 259 (322)
.+.||||||+..+ ...+...+..+|++|+|+|++++... +.......+..+ +.|
T Consensus 86 ~~~iiDtPGh~~f------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~ 147 (458)
T 1f60_A 86 QVTVIDAPGHRDF------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQ 147 (458)
T ss_dssp EEEEEECCCCTTH------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCE
T ss_pred eEEEEECCCcHHH------------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCe
Confidence 8999999997632 33455668899999999999653211 222222222221 344
Q ss_pred EEEEEeCCCCCCC-hhH---HHHHHHHHhcCCCC----CcEEEeecCCCCCHHHH
Q 020714 260 RVLCMNKVDLVTK-KKD---LLKVAEQFKHLPGY----ERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 260 ~ivV~NK~Dl~~~-~~~---~~~~~~~~~~~~~~----~~~~~iSa~~g~gi~el 306 (322)
+++|+||+|+... ... .......+....++ .+++++||++|.|+.++
T Consensus 148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 8999999999742 222 22222222222232 47999999999999743
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=7.2e-16 Score=142.17 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=82.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCC------CCceee--eEEEEEeeCC--ccEEEEeCCCcccCCCC---
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK------TNTTTH--EVLGVMTKAD--TQICIFDTPGLMLNKSG--- 203 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~------~~~t~~--~~~~~~~~~~--~~~~l~DtpG~~~~~~~--- 203 (322)
...++|+++|.+|+|||||+|+|.+......... ...|.. .....+...+ ..+.+|||||+......
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999877543322211 111221 1111122223 26899999999533210
Q ss_pred --CChhhHHHHHHHHHhhcc----------cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 204 --YSHKDVKVRVESAWSAVN----------LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 204 --~~~~~~~~~~~~~~~~~~----------~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
.....+...+...+.... .+++++++++...+ +..... ..++..+. .++|+|+|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d-~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD-VAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHH-HHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhH-HHHHHHhc----cCCCEEEEEECCCCCC
Confidence 011222223333333222 22467777765322 222222 14444443 3578999999999987
Q ss_pred ChhHHH--HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 272 KKKDLL--KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 272 ~~~~~~--~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..+... .....+....++ +++++||++|.| ++.+.++.+.+.+
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 544322 344555555666 699999999999 8887777776654
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.66 E-value=4e-16 Score=143.98 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceee-----------------------------------------
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH----------------------------------------- 176 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~----------------------------------------- 176 (322)
....|+|+|.+|||||||+|+|++..+...+... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3458999999999999999999997653222111 1100
Q ss_pred --------------eEEEEEeeCCccEEEEeCCCcccCCCC-CChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH
Q 020714 177 --------------EVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS 241 (322)
Q Consensus 177 --------------~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~ 241 (322)
....+.......+.||||||+..+... .+..........+...+..+|++|+|+|.+.... ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-ATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-GGC
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-CCH
Confidence 011112223557899999999875431 1222222333444456788999999998754221 112
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHH
Q 020714 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM 311 (322)
Q Consensus 242 ~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~ 311 (322)
....++..+... +.|+++|+||+|+..................+. +++++|++++.|+++.+.++.
T Consensus 191 ~~~~l~~~~~~~---~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPS---GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTT---CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhccc---CCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHHH
Confidence 344555555433 567999999999987544333333333333444 589999999999987765543
No 181
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=4.5e-16 Score=133.35 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=94.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceee--------eEEEEE------------------eeCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTH--------EVLGVM------------------TKAD 186 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~--------~~~~~~------------------~~~~ 186 (322)
...+|+++|.+|||||||+|+|++. ++..+...++++.+ .....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5678999999999999999999754 23334444443211 010111 1134
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.+|||+|+... + .. .. ..++.+++|+|+..... ....+.... +.|+++|+||
T Consensus 109 ~d~iiidt~G~~~~-~----~~---------~~-~~~~~~i~vvd~~~~~~----~~~~~~~~~------~~~~iiv~NK 163 (221)
T 2wsm_A 109 CDLLLIENVGNLIC-P----VD---------FD-LGENYRVVMVSVTEGDD----VVEKHPEIF------RVADLIVINK 163 (221)
T ss_dssp CSEEEEEEEEBSSG-G----GG---------CC-CSCSEEEEEEEGGGCTT----HHHHCHHHH------HTCSEEEEEC
T ss_pred CCEEEEeCCCCCCC-C----ch---------hc-cccCcEEEEEeCCCcch----hhhhhhhhh------hcCCEEEEec
Confidence 57889999996211 0 00 01 13578999999865421 111222222 2568999999
Q ss_pred CCCCCCh-hHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 267 VDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 267 ~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+|+.... .........+.......+++++||++|.|+++++++|.+.+..+
T Consensus 164 ~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 164 VALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp GGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred ccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 9986421 12333333333323334799999999999999999999887654
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.63 E-value=3.9e-16 Score=148.72 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=85.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC--eee----------------------ee------cCCCCceeeeEEEEEeeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA----------------------AV------SRKTNTTTHEVLGVMTKAD 186 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~----------------------~~------~~~~~~t~~~~~~~~~~~~ 186 (322)
...++|+++|.+|+|||||+++|+.. .+. .+ ....|.|.+.....+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45689999999999999999998631 110 00 1123444443333344567
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC-------CcHHHHHHHHHHhcccCCCCCc
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (322)
..+.||||||+..+.. .+...+..+|++|+|+|++++.. .+.......+... +.|
T Consensus 121 ~~~~iiDtPGh~~f~~------------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp 182 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVT------------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GIN 182 (467)
T ss_dssp EEEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCS
T ss_pred eEEEEEECCCcHHHHH------------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCC
Confidence 7899999999875522 23345688999999999976521 1222222222222 355
Q ss_pred -EEEEEeCCCCCCC---hhHHH---HHHHHHhcCC-C-----CCcEEEeecCCCCCHHHHH
Q 020714 260 -RVLCMNKVDLVTK---KKDLL---KVAEQFKHLP-G-----YERIFMTSGLKGAGLKALT 307 (322)
Q Consensus 260 -~ivV~NK~Dl~~~---~~~~~---~~~~~~~~~~-~-----~~~~~~iSa~~g~gi~el~ 307 (322)
+++|+||+|+... ....+ .....+.... + ..+++++||++|.|+++++
T Consensus 183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 8999999999642 11111 1122222111 2 2369999999999998754
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.63 E-value=2e-15 Score=145.55 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=76.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe--eee-------------------ecCCCCceeeeEEEEEeeCCccEEEEeCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VAA-------------------VSRKTNTTTHEVLGVMTKADTQICIFDTP 195 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~~~-------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dtp 195 (322)
.+..+|+++|.+|+|||||+|+|+... ... .....|.|.......+...+..+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 356899999999999999999998521 100 00122333333333355667889999999
Q ss_pred CcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
|+..+. ..+...+..+|++|+|+|++.+...+ ...++..+... +.|+++|+||+|+...
T Consensus 91 G~~df~------------~~~~~~l~~aD~~IlVvDa~~g~~~~---t~~~~~~~~~~---~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS------------EDTYRTLTAVDCCLMVIDAAKGVEDR---TRKLMEVTRLR---DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC------------HHHHHGGGGCSEEEEEEETTTCSCHH---HHHHHHHHTTT---TCCEEEEEECTTSCCS
T ss_pred CChhHH------------HHHHHHHHHCCEEEEEEeCCccchHH---HHHHHHHHHHc---CCCEEEEEcCcCCccc
Confidence 997542 12334577899999999998764322 22333333322 5679999999999764
No 184
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.62 E-value=9.4e-17 Score=148.48 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=130.4
Q ss_pred CCceEEEccccCCCCCC-C----------------CCCCCCCCCC----hhhHHHH-HHhhCC---eEEEeec-cccchh
Q 020714 45 DCDSVFDSSYFRIPTID-D----------------PQNNNAAKKQ----EPTWDEK-YRERTD---RIVFGEE-AQKGKL 98 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-~----------------~k~dl~~~~~----~~~w~~~-~~~~~~---~i~f~~~-~~~~~~ 98 (322)
.+++++.+.|++.|..+ . ||+|+.+++. ...|... +...+. .+++.++ ++.|..
T Consensus 71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~ 150 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMA 150 (369)
T ss_dssp HCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHH
T ss_pred cCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHH
Confidence 46788888888876644 2 8999987643 4567654 455554 5788888 888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCc
Q 020714 99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNT 173 (322)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~ 173 (322)
.+++. +...+ ...+++++|.||||||||+|+|++. ....++..+|+
T Consensus 151 ~L~~~--------------I~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt 201 (369)
T 3ec1_A 151 KVMEA--------------INRYR---------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT 201 (369)
T ss_dssp HHHHH--------------HHHHH---------------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS
T ss_pred HHHHH--------------HHhhc---------------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe
Confidence 77211 11111 1246999999999999999999986 55677888999
Q ss_pred eeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc
Q 020714 174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ 253 (322)
Q Consensus 174 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~ 253 (322)
|....... .+..+.++||||+...... . +.........+..-...+.++++++......... +..+...
T Consensus 202 T~~~~~~~---~~~~~~liDtPG~~~~~~~-~-~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~------l~~l~~l 270 (369)
T 3ec1_A 202 TLDMIEIP---LESGATLYDTPGIINHHQM-A-HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGG------LARLDYI 270 (369)
T ss_dssp SCEEEEEE---CSTTCEEEECCSCCCCSSG-G-GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETT------TEEEEEE
T ss_pred EEeeEEEE---eCCCeEEEeCCCcCcHHHH-H-HHHhHHHHHHHhcccccCceEEEEcCCceEEECC------EEEEEEc
Confidence 98766532 2345899999999754311 1 1111111111111266799999998832100000 0001111
Q ss_pred CCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHH
Q 020714 254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK 304 (322)
Q Consensus 254 ~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~ 304 (322)
...+.|+++++||+|..+... .+...+.+.+..+. .+.+.++..+.++.
T Consensus 271 ~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~-~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 271 KGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGE-LLSPPSKRYAAEFP 319 (369)
T ss_dssp ESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTT-TBCSSCGGGTTTCC
T ss_pred cCCCceEEEEecCCccccccc-HHHHHHHHHHhcCC-ccCCCCchhhhhcc
Confidence 123567999999999976532 12222223332333 35556665555543
No 185
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.62 E-value=1.4e-15 Score=150.75 Aligned_cols=168 Identities=19% Similarity=0.247 Sum_probs=106.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCcee-----------------------------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT----------------------------------------- 175 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~----------------------------------------- 175 (322)
...++|+|+|.+|+|||||+|+|++..+...+..+ +|+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 45679999999999999999999997653222211 111
Q ss_pred ----------e-eEEEEEeeCCccEEEEeCCCcccCCC-CCCh---hhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcH
Q 020714 176 ----------H-EVLGVMTKADTQICIFDTPGLMLNKS-GYSH---KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 240 (322)
Q Consensus 176 ----------~-~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~---~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~ 240 (322)
. ....+.......+.|+||||+..... ..+. ......+...+. ..+|++++|+|++......+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence 1 11111223455789999999986321 1121 122222332222 67899999999987666655
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH-H-hcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 241 SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-F-KHLPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~-~-~~~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
. ..++..+... +.|+++|+||+|+............. . ....++.+++++||++|.|+++|++.|.+
T Consensus 206 ~--l~ll~~L~~~---g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 206 A--LKIAKEVDPQ---GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp H--HHHHHHHCTT---CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred H--HHHHHHHHhc---CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3 2344444433 46799999999998654322221110 1 01124456899999999999999999987
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=6e-15 Score=146.73 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=75.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe--e---eeec------------CCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V---AAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~---~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 199 (322)
.+..+|+++|.+|+|||||+|+|+... . ..+. ...+.|.......+...+..+.||||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 457899999999999999999997311 0 0000 0223444433334555678899999999975
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+. ......+..+|++|+|+|++.+...+.......+.. . +.|+++|+||+|+...
T Consensus 90 f~------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~---~---~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FT------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK---Y---KVPRIAFANKMDKTGA 144 (691)
T ss_dssp CH------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---T---TCCEEEEEECTTSTTC
T ss_pred hH------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH---c---CCCEEEEEECCCcccC
Confidence 31 122344567899999999987655444443333332 2 4679999999999764
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.60 E-value=3.7e-15 Score=136.47 Aligned_cols=155 Identities=16% Similarity=0.241 Sum_probs=93.9
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceeee--EE---------------EE----------
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE--VL---------------GV---------- 181 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~~--~~---------------~~---------- 181 (322)
....+..|+++|++|+|||||+|.|. +.++..+...++++... .. .+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence 44567889999999999999999986 34444444444333210 00 00
Q ss_pred ------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHH
Q 020714 182 ------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (322)
Q Consensus 182 ------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~ 249 (322)
+...+..+.|+||||+..+ .. .....+|++++|+|++.+..... +.. ..
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~------~~---------~~~~~aD~vl~Vvd~~~~~~~~~--l~~--~~ 192 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQS------ET---------EVARMVDCFISLQIAGGGDDLQG--IKK--GL 192 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH------HH---------HHHTTCSEEEEEECC------CC--CCH--HH
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccch------HH---------HHHHhCCEEEEEEeCCccHHHHH--HHH--hh
Confidence 0034678999999998632 11 12478899999999864321100 000 00
Q ss_pred hcccCCCCCcEEEEEeCCCCCCChhHHH----HHHHHHhcCC-----CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 250 MGKQAPPKQKRVLCMNKVDLVTKKKDLL----KVAEQFKHLP-----GYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 250 ~~~~~~~~~p~ivV~NK~Dl~~~~~~~~----~~~~~~~~~~-----~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
. +.|.++|+||+|+.... ... +....+.... +..+++++||++|.|+++++++|.+.+.
T Consensus 193 ~------~~p~ivv~NK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 193 M------EVADLIVINKDDGDNHT-NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp H------HHCSEEEECCCCTTCHH-HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred h------cccCEEEEECCCCCChH-HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 24589999999997642 222 2222111111 1356899999999999999999998765
No 188
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.60 E-value=7.8e-17 Score=148.93 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=122.6
Q ss_pred CCceEEEccccCCCCCC-----------------CCCCCCCCCC----ChhhHHHH-HHhhCC---eEEEeec-cccchh
Q 020714 45 DCDSVFDSSYFRIPTID-----------------DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKL 98 (322)
Q Consensus 45 ~~d~v~~~~da~~p~~~-----------------~~k~dl~~~~----~~~~w~~~-~~~~~~---~i~f~~~-~~~~~~ 98 (322)
..|+++.+.|++.|... .||+|+.+++ ....|..+ +...+. .+++.++ ++.|..
T Consensus 69 ~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~ 148 (368)
T 3h2y_A 69 SDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIA 148 (368)
T ss_dssp SCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHH
T ss_pred cCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHH
Confidence 35677777776654322 2899998765 35567554 345555 5788888 888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCe------eeeecCCCC
Q 020714 99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTN 172 (322)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~------~~~~~~~~~ 172 (322)
++++. +.... ...+++++|.+|||||||+|+|++.. ...++..+|
T Consensus 149 ~L~~~--------------l~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g 199 (368)
T 3h2y_A 149 ELADA--------------IEYYR---------------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG 199 (368)
T ss_dssp HHHHH--------------HHHHH---------------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC-
T ss_pred HHHhh--------------hhhhc---------------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC
Confidence 77211 11111 13469999999999999999998753 455788889
Q ss_pred ceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc
Q 020714 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252 (322)
Q Consensus 173 ~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~ 252 (322)
+|+...... -+..+.++||||+...... . +.........+......+.++++++.......... ..+..+.
T Consensus 200 tT~~~~~~~---~~~~~~liDtPG~~~~~~~-~-~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l---~~~d~l~- 270 (368)
T 3h2y_A 200 TTLDLIDIP---LDEESSLYDTPGIINHHQM-A-HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL---ARFDYVS- 270 (368)
T ss_dssp ---CEEEEE---SSSSCEEEECCCBCCTTSG-G-GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT---EEEEEEE-
T ss_pred eecceEEEE---ecCCeEEEeCCCcCcHHHH-H-HHhhHHHHHHhccccccCceEEEEcCCCEEEEcce---EEEEEec-
Confidence 998766532 2334899999999765321 1 11111122222224666889999987321100000 0011112
Q ss_pred cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCC
Q 020714 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG 302 (322)
Q Consensus 253 ~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~g 302 (322)
..+.|+++++||+|..+... .+...+.+.+..+. .+++.++..+.+
T Consensus 271 --~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~-~l~p~~~~~~~~ 316 (368)
T 3h2y_A 271 --GGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGD-LLSPPTPEELEN 316 (368)
T ss_dssp --SSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTT-TBCSSCHHHHHT
T ss_pred --CCCceEEEEecCcccccccc-HHHHHHHHHHHhCC-ccCCCchhhHhh
Confidence 22568999999999987532 33333333333333 245555443333
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.60 E-value=4.9e-15 Score=147.42 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=77.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC--eee---eec------------CCCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA---AVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~--~~~---~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 199 (322)
.+..+|+++|.+|+|||||+|+|+.. ... .+. ...++|.......+...+..+.||||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 35689999999999999999999841 110 010 1234444444444556678899999999975
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
+.. .+...+..+|++|+|+|++.+.......+...+.. . +.|+++|+||+|+...
T Consensus 88 f~~------------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~---~---~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTV------------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT---Y---GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCH------------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH---T---TCCEEEEEECTTSTTC
T ss_pred hHH------------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH---c---CCCEEEEEECCCcccc
Confidence 421 12234566899999999987655544444443333 2 4679999999999764
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.60 E-value=7.5e-15 Score=145.50 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=77.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee-----ee------cC------CCCceeeeEEEEEeeCCccEEEEeCCCccc
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~-----~~------~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 199 (322)
....+|+++|.+|+|||||+++|++.... .+ .. ..+.|.......+...+..+.||||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45678999999999999999999842111 00 00 123444445445556678899999999875
Q ss_pred CCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCC
Q 020714 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~ 270 (322)
+. ......+..+|++++|+|+..+...+...+...+.. . +.|+++|+||+|+.
T Consensus 87 f~------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~---~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FV------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER---L---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GH------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---T---TCCEEEEEECGGGC
T ss_pred hH------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH---c---cCCEEEEecCCchh
Confidence 31 123344567899999999877654433333333332 2 46799999999997
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.2e-15 Score=122.53 Aligned_cols=120 Identities=14% Similarity=0.220 Sum_probs=74.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeee--cCCCCceeeeEEEEEeeCCccEEEEeCCCcccCCCCCChhhHHHHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (322)
...++|+++|.+|||||||+|+|.+...... ...++++. ...+..+.+|||||+..+... ....+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~-----~~~~~~ 113 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYK-----LSDYLK 113 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-----HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHH-----HHHHHH
Confidence 5678999999999999999999998764321 11122221 125678899999999765431 111121
Q ss_pred HHHhhcccccEEEEEEeCC-CCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEeCCCCCCCh
Q 020714 215 SAWSAVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKK 273 (322)
Q Consensus 215 ~~~~~~~~ad~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~----~~~~~p~ivV~NK~Dl~~~~ 273 (322)
..+..+|++++|+|++ +. ........++..+... ...+.|+++|+||+|+....
T Consensus 114 ---~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 114 ---TRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp ---HHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ---hhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 2235689999999996 21 1112333444333211 22467899999999998654
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.57 E-value=4.7e-14 Score=140.51 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=75.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe--eee---ec------------CCCCceeeeEEEEEeeCC-------ccEEEE
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VAA---VS------------RKTNTTTHEVLGVMTKAD-------TQICIF 192 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~--~~~---~~------------~~~~~t~~~~~~~~~~~~-------~~~~l~ 192 (322)
.+..+|+++|.+|+|||||+++|+... +.. +. ...+.|.......+...+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 356789999999999999999996421 110 00 012334333333333444 789999
Q ss_pred eCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
||||+..+.. .+...+..+|++|+|+|++.+...+...+..... .. +.|+++|+||+|+...
T Consensus 88 DTPG~~df~~------------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~---~~---~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTI------------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN---KY---KVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHH------------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHH---Hc---CCCEEEEEeCCCcccc
Confidence 9999975421 2223456789999999998765443333333222 22 4679999999998754
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=3.3e-14 Score=130.18 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCcccCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK 201 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 201 (322)
.++|+++|.||||||||+|+|++.. ..++..+++|.....+.+...+ ..+.+|||||+..+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3689999999999999999999876 4566677777665544443333 468999999997532
Q ss_pred CCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~ 234 (322)
. .........+..++.+|++++|+|+++
T Consensus 81 ~-----~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 S-----KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H-----HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c-----ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 000001123345688999999999975
No 194
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=5.2e-14 Score=128.51 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=94.3
Q ss_pred hhccCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCceee-----------------eEEEE---------
Q 020714 134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTH-----------------EVLGV--------- 181 (322)
Q Consensus 134 ~~~~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t~~-----------------~~~~~--------- 181 (322)
.....+..++++|+||+|||||+|.|. +.++...+..+.++.. .....
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l 129 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL 129 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccc
Confidence 345677889999999999999999997 3444333322222110 00000
Q ss_pred -------------EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHH
Q 020714 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (322)
Q Consensus 182 -------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~ 248 (322)
+...+.++.|+||||+... .. .....+|++++++|++.+.. ...+...+.
T Consensus 130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~------~~---------~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~ 192 (337)
T 2qm8_A 130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQS------ET---------AVADLTDFFLVLMLPGAGDE--LQGIKKGIF 192 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC------HH---------HHHTTSSEEEEEECSCC--------CCTTHH
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECCCCCcc------hh---------hHHhhCCEEEEEEcCCCccc--HHHHHHHHh
Confidence 1125788999999998742 11 12357799999999853211 000101111
Q ss_pred HhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHH----HhcCC-----CCCcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ----FKHLP-----GYERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 249 ~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~----~~~~~-----~~~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
..+.++|+||+|+............. +.... +.++++.+||++|.|+++|++.|.+.+.
T Consensus 193 --------~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 193 --------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp --------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred --------ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12467888999986543222111122 21111 1357999999999999999999998764
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.54 E-value=1.4e-14 Score=127.24 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=98.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh-----CCeeeeecCCCCceee------------eEEEEE-----------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNTTTH------------EVLGVM----------------- 182 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~-----~~~~~~~~~~~~~t~~------------~~~~~~----------------- 182 (322)
.+...++++|.+||||||+++.|. +.++..+...++.+.. ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 356788999999999999999997 6666655544432110 000000
Q ss_pred ------------e-eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHH-HHHH-HH
Q 020714 183 ------------T-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIR-LI 247 (322)
Q Consensus 183 ------------~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~-~~~~-~l 247 (322)
. ..+..+.|+||||+..+.. ...........+.. +++++++|+.......+. .... ..
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL 164 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence 0 0124799999999864211 00001122234456 899999998543322221 1111 11
Q ss_pred HHhcccCCCCCcEEEEEeCCCCCCChhH--HHHH-------HHH------------------HhcCCCCCcEEEeecCCC
Q 020714 248 ERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKV-------AEQ------------------FKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 248 ~~~~~~~~~~~p~ivV~NK~Dl~~~~~~--~~~~-------~~~------------------~~~~~~~~~~~~iSa~~g 300 (322)
..... .+.|+++|+||+|+...... ..+. ... ........+++++||++|
T Consensus 165 ~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~ 241 (262)
T 1yrb_A 165 LIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR 241 (262)
T ss_dssp HHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC
T ss_pred HHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc
Confidence 11111 14679999999999764321 1111 001 112122236899999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 020714 301 AGLKALTQYLMEQFKD 316 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~ 316 (322)
.|+++++++|.+.+..
T Consensus 242 ~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 242 EGFEDLETLAYEHYCT 257 (262)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcc
Confidence 9999999999988764
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.53 E-value=3.9e-14 Score=121.65 Aligned_cols=156 Identities=15% Similarity=0.244 Sum_probs=88.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC-----eeeeecCCCCceeee--------EEEEEe--------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHE--------VLGVMT-------------------- 183 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~~~~t~~~--------~~~~~~-------------------- 183 (322)
...++|+++|.+|||||||+++|+.. ..+.+...++++.+. ....+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35789999999999999999999754 223333223211110 000011
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
..+..++++|++|...... .+. ...+.++.++|.......... ....+ ..|+++|
T Consensus 116 ~~~~d~~~id~~g~i~~~~-------------s~~--~~~~~~~~v~~~~~~~~~~~~----~~~~~------~~~~iiv 170 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA-------------DFD--LGTHKRIVVISTTEGDDTIEK----HPGIM------KTADLIV 170 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG-------------GCC--CSCSEEEEEEEGGGCTTTTTT----CHHHH------TTCSEEE
T ss_pred cCCCCEEEEeCCCCccCcc-------------hhh--hccCcEEEEEecCcchhhHhh----hhhHh------hcCCEEE
Confidence 0112677788877532100 011 123556677775322111110 01111 2468999
Q ss_pred EeCCCCCCCh-hHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 264 MNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 264 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
+||+|+.... .........+.......+++++||++|.|+++++++|.+.+..+
T Consensus 171 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 171 INKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred EeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 9999986432 12223233333222334799999999999999999999888653
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=7.7e-14 Score=135.06 Aligned_cols=117 Identities=16% Similarity=0.262 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC--e-------------------eeeecCCCCceeeeEEEEEeeCCccEEEEeCCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT--K-------------------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~--~-------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG 196 (322)
+.-+|+|+|..++|||||..+|+.. . .......-|.|.......+.+.+..+.|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4567999999999999999998620 0 001112224444444445667889999999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
..+|.. .+...++.+|++|+|+|+..+...+...+.....+. +.|.++++||+|....
T Consensus 110 HvDF~~------------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~------~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSE------------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR------ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSH------------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCCEEEEEECTTSCCC
T ss_pred cHHHHH------------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh------CCceEEEEecccchhc
Confidence 998742 222445677999999999887655555555554443 3579999999998764
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1.1e-13 Score=124.38 Aligned_cols=170 Identities=16% Similarity=0.135 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC-eeeeecCCC------Cceee-eEEEE-EeeC--CccEEEEeCCCcccCCCC-CC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT-KVAAVSRKT------NTTTH-EVLGV-MTKA--DTQICIFDTPGLMLNKSG-YS 205 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~-~~~~~~~~~------~~t~~-~~~~~-~~~~--~~~~~l~DtpG~~~~~~~-~~ 205 (322)
-.++|+++|++|||||||+|+|.+. .....+ .+ ..|.. ..... .... ...+.+|||+|+...... ..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 4688999999999999999998875 322211 10 01111 11111 1111 346899999999432110 00
Q ss_pred hhhHH----HHHHHHHhhc----------ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 206 HKDVK----VRVESAWSAV----------NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 206 ~~~~~----~~~~~~~~~~----------~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
...+. ..+...+..+ ..+++++++.+.+.+ +..... ..++..+. ...++++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~-~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD-VAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH-HHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH-HHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 01111 1111222222 123445555554332 122222 24555553 2457999999999986
Q ss_pred Chh--HHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 272 KKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 272 ~~~--~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..+ ...+....+...++. +++++||++| |++++|.++.+.+.+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhc
Confidence 433 222334444444555 6999999999 999999999988764
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=127.55 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=72.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeeeeecC------CCCceeeeEEEE-EeeCC--ccEEEEeCCCcccCCCCC-Chh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------KTNTTTHEVLGV-MTKAD--TQICIFDTPGLMLNKSGY-SHK 207 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~------~~~~t~~~~~~~-~~~~~--~~~~l~DtpG~~~~~~~~-~~~ 207 (322)
-.++|+|+|++|||||||+|+|++......+. ...++....... +...+ ..+.+|||+|+....... ...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 45789999999999999999999876532211 011111111111 11122 367899999997542110 001
Q ss_pred hHHH----HHHHHH--------hhccccc--EEEEEEeCC-CCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 208 DVKV----RVESAW--------SAVNLFE--VLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 208 ~~~~----~~~~~~--------~~~~~ad--~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
.+.. .+...+ ..+..++ +++++.+.+ .+....+ ..++..+.. +.|+|+|+||+|+...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d---~~~lk~L~~----~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD---IEFMKRLHE----KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH---HHHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH---HHHHHHHhc----cCcEEEEEEcccCccH
Confidence 1111 111111 1123333 455555443 2222222 245555542 5789999999999865
Q ss_pred hhHHH--HHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHHHh
Q 020714 273 KKDLL--KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQF 314 (322)
Q Consensus 273 ~~~~~--~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~~l 314 (322)
.+... .........++. +++++|++++.++++++..|...+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 43221 222333333444 589999999999999888877654
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=2.5e-13 Score=124.95 Aligned_cols=89 Identities=22% Similarity=0.331 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEee---------------------CCccEEEEeCCCcc
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------ADTQICIFDTPGLM 198 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~l~DtpG~~ 198 (322)
++|+++|.||||||||+|+|++.. +.+...+++|.....+.... .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999865 44556666666555444322 13468999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~ 234 (322)
.+.... ..+ -...+..++.+|++++|+|+++
T Consensus 81 ~~a~~~--~~l---g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKG--EGL---GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSS--SCT---THHHHHHHHTCSEEEEEEECCC
T ss_pred cccccc--chH---HHHHHHHHHhCCEEEEEEECCC
Confidence 653211 111 1233455788999999999975
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=3.1e-13 Score=130.94 Aligned_cols=131 Identities=20% Similarity=0.278 Sum_probs=79.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeee--eecCCCCceeeeEEEEE--------------------------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVM-------------------------------- 182 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~--~~~~~~~~t~~~~~~~~-------------------------------- 182 (322)
...++|+|+|.+|||||||+|+|++..+. .++..+++++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998865 45666655442211000
Q ss_pred ----eeCC---ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC
Q 020714 183 ----TKAD---TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP 255 (322)
Q Consensus 183 ----~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~ 255 (322)
...+ ..+.||||||+............ .....+...+..+|++++|+|++..... .....++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~-~f~~~~~~~l~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGY-DFPAVLRWFAERVDLIILLFDAHKLEIS--DEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCS-CHHHHHHHHHHHCSEEEEEEETTSCCCC--HHHHHHHHHTTTC--
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHh-hHHHHHHHHHHhCCEEEEEEeCCcCCCC--HHHHHHHHHHHhc--
Confidence 0000 36899999999752110000000 0011222345678999999999663222 2233455555433
Q ss_pred CCCcEEEEEeCCCCCCCh
Q 020714 256 PKQKRVLCMNKVDLVTKK 273 (322)
Q Consensus 256 ~~~p~ivV~NK~Dl~~~~ 273 (322)
+.|+++|+||+|+....
T Consensus 218 -~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 -EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -GGGEEEEEECGGGSCHH
T ss_pred -CCCEEEEEECCCccCHH
Confidence 46799999999998653
No 202
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.43 E-value=4.6e-13 Score=122.67 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=82.4
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCC--------CcHHHHHHHHHHhccc
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIERMGKQ 253 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~--------~~~~~~~~~l~~~~~~ 253 (322)
+...+..+.+|||+|+..+.. .....+..++++|+|+|+++... ........++..+...
T Consensus 188 ~~~~~~~l~iwDt~GQe~~r~------------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 188 FTFKDLHFKMFDVGGQRSERK------------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEETTEEEEEEEECCSGGGGG------------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EeeCCeeEEEEeCCCchhhhH------------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 444577899999999975432 12245789999999999975311 1123455566665432
Q ss_pred -CCCCCcEEEEEeCCCCCCCh----------------hHHHHHHH----HHhcC-----CCCCcEEEeecCCCCCHHHHH
Q 020714 254 -APPKQKRVLCMNKVDLVTKK----------------KDLLKVAE----QFKHL-----PGYERIFMTSGLKGAGLKALT 307 (322)
Q Consensus 254 -~~~~~p~ivV~NK~Dl~~~~----------------~~~~~~~~----~~~~~-----~~~~~~~~iSa~~g~gi~el~ 307 (322)
...+.|+++|+||+|+.... ...++... .+... .....+++|||++|.||+++|
T Consensus 256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 33568999999999985211 11111111 12222 122358999999999999999
Q ss_pred HHHHHHhhhcCCc
Q 020714 308 QYLMEQFKDLGLK 320 (322)
Q Consensus 308 ~~i~~~l~~~~~~ 320 (322)
+++.+.+....++
T Consensus 336 ~~v~~~i~~~~l~ 348 (353)
T 1cip_A 336 DAVTDVIIKNNLK 348 (353)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876654
No 203
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.39 E-value=1.5e-12 Score=119.67 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=77.5
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCC--------CCcHHHHHHHHHHhccc
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMGKQ 253 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~--------~~~~~~~~~~l~~~~~~ 253 (322)
+...+..+.+|||+|+..+... ....+..++++|+|+|+++.. .........++..+...
T Consensus 196 ~~~~~~~l~i~Dt~Gq~~~r~~------------w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 196 FEIKNVPFKMVDVGGQRSERKR------------WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp EEETTEEEEEEEECC-------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred eeeCCeEEEEEeccchhhhhhh------------HHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 3445778999999999754321 224568899999999997621 11122444555555432
Q ss_pred -CCCCCcEEEEEeCCCCCCCh-----------------hHHHHHH----HHHhcCC-----CCCcEEEeecCCCCCHHHH
Q 020714 254 -APPKQKRVLCMNKVDLVTKK-----------------KDLLKVA----EQFKHLP-----GYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 254 -~~~~~p~ivV~NK~Dl~~~~-----------------~~~~~~~----~~~~~~~-----~~~~~~~iSa~~g~gi~el 306 (322)
...+.|+|+|+||+|+.... ...++.. ..|.... ....+++|||++|.||+++
T Consensus 264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 34568999999999985211 1122211 1222211 1225789999999999999
Q ss_pred HHHHHHHhhhcCC
Q 020714 307 TQYLMEQFKDLGL 319 (322)
Q Consensus 307 ~~~i~~~l~~~~~ 319 (322)
|+++.+.+....+
T Consensus 344 F~~v~~~i~~~~l 356 (362)
T 1zcb_A 344 FRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876544
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.37 E-value=2.4e-13 Score=134.10 Aligned_cols=158 Identities=15% Similarity=0.324 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhCC-----eeeeecCC------------CCceeeeEEEEEeeCCccEEEEeCCCcccCCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRK------------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~-----~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 202 (322)
-+|+|+|..++|||||..+|+.. +...+... -|.|.......+.+.+..+.|+||||+.+|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 46899999999999999998621 11111100 1334443333355678899999999998762
Q ss_pred CCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHH
Q 020714 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA 280 (322)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~ 280 (322)
..+...++.+|++|+|+|+..+...+...+.......+ .|.++++||+|....+. ...+..
T Consensus 82 -----------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~------lp~i~~INKmDr~~a~~~~~~~~i~ 144 (638)
T 3j25_A 82 -----------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG------IPTIFFINKIDQNGIDLSTVYQDIK 144 (638)
T ss_dssp -----------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT------CSCEECCEECCSSSCCSHHHHHHHH
T ss_pred -----------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC------CCeEEEEeccccccCCHHHHHHHHH
Confidence 23334567789999999998887776666666666555 45899999999865421 111111
Q ss_pred HH------------------------------------------------------------HhcCCCCCcEEEeecCCC
Q 020714 281 EQ------------------------------------------------------------FKHLPGYERIFMTSGLKG 300 (322)
Q Consensus 281 ~~------------------------------------------------------------~~~~~~~~~~~~iSa~~g 300 (322)
.. +.. ....|++..||++|
T Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~Pv~~gSa~~~ 223 (638)
T 3j25_A 145 EKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQN-CSLFPLYHGSAKSN 223 (638)
T ss_dssp HTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHH-TSCCCCCCCCSTTC
T ss_pred HHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcc-cccccccccccccC
Confidence 10 111 12347889999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 020714 301 AGLKALTQYLMEQFKD 316 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~ 316 (322)
.|++.|++.|.+.+..
T Consensus 224 ~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 224 IGIDNLIEVITNKFYS 239 (638)
T ss_dssp CSHHHHHHHHHHSCCC
T ss_pred CCchhHhhhhhccccC
Confidence 9999999999987653
No 205
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.36 E-value=2.6e-13 Score=121.70 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=84.4
Q ss_pred CCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC----hhhHHHHHHhhCCeEEEeec-cccc
Q 020714 43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE-AQKG 96 (322)
Q Consensus 43 ~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~----~~~w~~~~~~~~~~i~f~~~-~~~~ 96 (322)
.+++|+++.+.|++.|.++ + ||+||.+.+. .+.|.++|...++.+++.++ ++.+
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g 163 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS 163 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 4589999999999999988 4 8999998754 68899999999999999888 6666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-----
Q 020714 97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----- 171 (322)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~----- 171 (322)
...+++ ...+-.++++|++|||||||+|.|.+.....++...
T Consensus 164 ~~~L~~---------------------------------~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~ 210 (307)
T 1t9h_A 164 LADIIP---------------------------------HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGR 210 (307)
T ss_dssp CTTTGG---------------------------------GGTTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred HHHHHh---------------------------------hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCC
Confidence 665511 012346899999999999999999986544333322
Q ss_pred --CceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 172 --NTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 172 --~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
++|+.... .... ...++||||+..+.
T Consensus 211 G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 211 GKHTTRHVEL--IHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp ----CCCCCE--EEET--TEEEESSCSCSSCC
T ss_pred CcccccHHHH--hhcC--CEEEecCCCccccc
Confidence 34443322 1121 34899999997654
No 206
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.34 E-value=3.1e-12 Score=115.63 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=82.6
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCC-------CCCCC-cHHHHHHHHHHhcc-
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH-------RHLTS-PDSRVIRLIERMGK- 252 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s-------~~~~~-~~~~~~~~l~~~~~- 252 (322)
+...+..+.+|||+|+..+.. .+...+..++++|+|+|++ +..+. .......++..+..
T Consensus 162 ~~~~~v~l~iwDtgGQe~~R~------------~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 162 FDLQSVIFRMVDVGGQRSERR------------KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEETTEEEEEEEECCSHHHHT------------TGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEeeceeeEEEEcCCchhHHH------------HHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 445678899999999864322 1224678999999999875 22122 12244455555543
Q ss_pred cCCCCCcEEEEEeCCCCCCCh-----------------hHHHHH----HHHHhcC-----CCCCcEEEeecCCCCCHHHH
Q 020714 253 QAPPKQKRVLCMNKVDLVTKK-----------------KDLLKV----AEQFKHL-----PGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 253 ~~~~~~p~ivV~NK~Dl~~~~-----------------~~~~~~----~~~~~~~-----~~~~~~~~iSa~~g~gi~el 306 (322)
....+.|+++++||+|+.... ...++. ...+... .++ .++++||+++.||+++
T Consensus 230 ~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFV 308 (327)
T ss_dssp GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHH
T ss_pred hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHH
Confidence 333568999999999985421 112221 2222222 222 4688999999999999
Q ss_pred HHHHHHHhhhcCCc
Q 020714 307 TQYLMEQFKDLGLK 320 (322)
Q Consensus 307 ~~~i~~~l~~~~~~ 320 (322)
|+.+.+.+.+++++
T Consensus 309 F~~v~~~Il~~~l~ 322 (327)
T 3ohm_A 309 FAAVKDTILQLNLK 322 (327)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhHH
Confidence 99999999887654
No 207
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.34 E-value=1.1e-12 Score=132.93 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=73.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeec---------------CCCCceeeeEEEEEee----------------C
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTK----------------A 185 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~----------------~ 185 (322)
.+..+|+|+|.+|+|||||+|+|+...-.... ...+.|.......+.. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 35679999999999999999999864211111 1122232222111112 1
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
+..+.||||||+..+.. .....+..+|++|+|+|+.++...+...+..... . .+.|+++|+|
T Consensus 97 ~~~i~liDTPG~~df~~------------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~---~---~~~p~ilviN 158 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS------------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL---G---ERIKPVVVIN 158 (842)
T ss_dssp EEEEEEECCCCCCSSCH------------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH---H---TTCEEEEEEE
T ss_pred CceEEEEECcCchhhHH------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---H---cCCCeEEEEE
Confidence 56789999999986532 1223456789999999998776555433332222 1 2467999999
Q ss_pred CCCCC
Q 020714 266 KVDLV 270 (322)
Q Consensus 266 K~Dl~ 270 (322)
|+|+.
T Consensus 159 K~D~~ 163 (842)
T 1n0u_A 159 KVDRA 163 (842)
T ss_dssp CHHHH
T ss_pred CCCcc
Confidence 99986
No 208
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.30 E-value=2.7e-12 Score=117.30 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=83.8
Q ss_pred CCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC---hhhHHHHHHhhCCeEEEeec-cccchh
Q 020714 44 NDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGKL 98 (322)
Q Consensus 44 ~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~---~~~w~~~~~~~~~~i~f~~~-~~~~~~ 98 (322)
.++|+++.+ +|+.|.++ + ||+||++++. .+.|..+|...++.+++.++ ++.+..
T Consensus 129 anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~ 207 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLK 207 (358)
T ss_dssp ECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHH
T ss_pred hcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHH
Confidence 479999865 88888877 4 8999998765 66899999999999999998 777766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCee-eeecCCC---C--
Q 020714 99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT---N-- 172 (322)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~-~~~~~~~---~-- 172 (322)
.+. .. + .+-.++|+|++|||||||+|.|.+... +..+... |
T Consensus 208 ~L~--------------~~----~---------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 208 PLE--------------EA----L---------------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp HHH--------------HH----H---------------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred HHH--------------Hh----c---------------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 661 00 0 134689999999999999999998654 4333221 2
Q ss_pred --ceeeeEEEEEeeCCccEEEEeCCCcccCC
Q 020714 173 --TTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 173 --~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 201 (322)
+|.......+. ....++||||+..+.
T Consensus 255 ~~tt~~~~i~~v~---q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 255 QHTTTAARLYHFP---HGGDVIDSPGVREFG 282 (358)
T ss_dssp ----CCCEEEECT---TSCEEEECHHHHTCC
T ss_pred ccceEEEEEEEEC---CCCEecCcccHHHhh
Confidence 33333322221 233789999997653
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1.9e-11 Score=113.13 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=70.4
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCc
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGL 197 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~ 197 (322)
....+.+++++|.||||||||+|+|++...+.++..|++|.....+.+...+ ..+.++|+||+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 3456789999999999999999999998766788889988887776655443 35799999999
Q ss_pred ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (322)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~ 234 (322)
....... +.+. ...+..+..+|.+++|+|+..
T Consensus 96 ~~~~s~~--e~L~---~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTG--VGLG---NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSS--SSSC---HHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHH--HHHH---HHHHHHHHHHHHHHHHHhccc
Confidence 7543321 1111 123345678899999999864
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.27 E-value=4.3e-11 Score=119.48 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=73.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe-----eeee------------cCCCCceeeeEEEEEee-------CCccEEEEe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK-----VAAV------------SRKTNTTTHEVLGVMTK-------ADTQICIFD 193 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~-----~~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~l~D 193 (322)
+.-+|+|+|...+|||||..+|+... ...+ ...-|.|.......+.+ .+..+.|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 45689999999999999999986210 0001 11123333322222322 246789999
Q ss_pred CCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCC
Q 020714 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (322)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~ 272 (322)
|||+.+|.. .....++.+|++|+|+|+..+...+...+.+.....+ .|.++++||+|....
T Consensus 92 TPGHvDF~~------------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~------lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTI------------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG------VPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHH------------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT------CCEEEEEECSSSTTC
T ss_pred CCCCcccHH------------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEccccccCc
Confidence 999987622 2223456679999999998876655555555444433 569999999998653
No 211
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.16 E-value=4.3e-11 Score=108.57 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=79.0
Q ss_pred EEeeCCccEEEEeCCCcccCCCCCChhhHHHHHHH-HHhhcccccEEEEEEeCCC-------C-CCCcHHHHHHHHHHhc
Q 020714 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVNLFEVLMVVFDVHR-------H-LTSPDSRVIRLIERMG 251 (322)
Q Consensus 181 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~ad~ii~v~D~s~-------~-~~~~~~~~~~~l~~~~ 251 (322)
.+...+..+.+|||+|+.. ++. +...+..++++|+|+|+++ . ..........++..+.
T Consensus 155 ~~~~~~v~l~iwDtaGQe~-------------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~ 221 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRS-------------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM 221 (340)
T ss_dssp EEESSSCEEEEEECCSCHH-------------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred EEEeeeeeeccccCCCccc-------------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence 3455678899999999863 222 2346799999999999972 1 1112223445555543
Q ss_pred -ccCCCCCcEEEEEeCCCCCCChh----------------HHHH----HHHHH------hcCC---------------CC
Q 020714 252 -KQAPPKQKRVLCMNKVDLVTKKK----------------DLLK----VAEQF------KHLP---------------GY 289 (322)
Q Consensus 252 -~~~~~~~p~ivV~NK~Dl~~~~~----------------~~~~----~~~~~------~~~~---------------~~ 289 (322)
.....+.|+++++||+|+..... ..++ ....+ .... ..
T Consensus 222 ~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T 4fid_A 222 TNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK 301 (340)
T ss_dssp HCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred hhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence 23335789999999999863210 1111 22333 1111 11
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhh
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKD 316 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~ 316 (322)
..++++||+++.||+.+|+.+.+.+.+
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 246899999999999999999998876
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.15 E-value=1.5e-10 Score=110.51 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=93.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCce-----------e--eeEEEE----------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-----------T--HEVLGV---------------- 181 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t-----------~--~~~~~~---------------- 181 (322)
..+..|+++|.+||||||+++.|. +.++..+...+... . -.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998 66555443322100 0 000000
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE-
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR- 260 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~- 260 (322)
....+.++.|+||||..... ......+..... +..+|.+++|+|+..+.. .... ...+... .|+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~---a~~~~~~----~~i~ 243 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQ---AKAFKDK----VDVA 243 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHH---HHHHHHH----HCCC
T ss_pred HHHCCCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHH---HHHHHhh----cCce
Confidence 00156789999999986321 111122222222 226799999999976432 2222 2222211 244
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHh-------------cCCCCCcEEEeecCCCCC-HHHHHHHHHHH
Q 020714 261 VLCMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQ 313 (322)
Q Consensus 261 ivV~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSa~~g~g-i~el~~~i~~~ 313 (322)
++|+||+|..............+. +...+.+.+++|+..|.| +++|++++.+.
T Consensus 244 gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 244 SVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 899999998754332222222221 111233456789999999 99999999876
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.13 E-value=1.4e-10 Score=104.20 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCCCceEEEccccCCCCCC-C--------------------CCCCCCCCC---ChhhHHHHHHhhCCeEEEeec-cccch
Q 020714 43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGK 97 (322)
Q Consensus 43 ~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~---~~~~w~~~~~~~~~~i~f~~~-~~~~~ 97 (322)
...+|.++.+.|++.|.++ + ||+|+.++. ..+.|..++...+..+++.|+ ++.+.
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi 156 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGI 156 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 3479999999999988644 2 899998765 267788989888888899998 88887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCC-----
Q 020714 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----- 172 (322)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~----- 172 (322)
.++++ . ..+..++++|++|+|||||+|.|. ...+..+....
T Consensus 157 ~~L~~--------------~-------------------l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G 202 (302)
T 2yv5_A 157 DELVD--------------Y-------------------LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG 202 (302)
T ss_dssp HHHHH--------------H-------------------TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-------
T ss_pred HHHHh--------------h-------------------ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC
Confidence 76610 0 123458999999999999999998 65443333222
Q ss_pred --ceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 173 --TTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 173 --~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
+|..... ... ...-.++||||+..+
T Consensus 203 ~~~t~~~~~--~~~-~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 203 RHTTTGVRL--IPF-GKGSFVGDTPGFSKV 229 (302)
T ss_dssp --CCCCEEE--EEE-TTTEEEESSCCCSSC
T ss_pred CCceeeEEE--EEc-CCCcEEEECcCcCcC
Confidence 3333222 111 123489999998643
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.11 E-value=4.1e-11 Score=110.73 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=53.5
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEEeeCC-----------------ccEEEEeCCCc
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGL 197 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~ 197 (322)
....+.+|+++|.||||||||+|+|++... .++..+++|.....+.+...+ ..+.+|||||+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 445678999999999999999999999875 667778888776665544332 24899999999
Q ss_pred ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC
Q 020714 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (322)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~ 234 (322)
..+... ........+..++.+|++++|+|+++
T Consensus 97 ~~~as~-----~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 97 VKGAHN-----GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccch-----hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 864321 00111234456788999999999864
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=1.3e-09 Score=101.57 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCeeee---ecCCCCceeeeEEEEEeeCC--ccEEEEeCCCcccCCCCC-Chh----hH
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGY-SHK----DV 209 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~-~~~----~~ 209 (322)
++++|+|++|+|||||+|.|.|..+.. ....++.+...........+ ..+.++|++|+....... ... .+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 459999999999999999999875321 11123444332222222222 267999999986431100 000 11
Q ss_pred HHHHHHHHhhc----------ccc--c-EEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHH
Q 020714 210 KVRVESAWSAV----------NLF--E-VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL 276 (322)
Q Consensus 210 ~~~~~~~~~~~----------~~a--d-~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~ 276 (322)
...+...+... ..+ | +++++.|..++.+..+. ..++.+. .++|+|+|+||+|.....+ .
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di---eilk~L~----~~~~vI~Vi~KtD~Lt~~E-~ 194 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL---VTMKKLD----SKVNIIPIIAKADAISKSE-L 194 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH---HHHHHTC----SCSEEEEEESCGGGSCHHH-H
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH---HHHHHHh----hCCCEEEEEcchhccchHH-H
Confidence 22333333322 122 2 35566676555444443 3344443 2568999999999987533 2
Q ss_pred HHHHHHHh---cCCCCCcEEEeec
Q 020714 277 LKVAEQFK---HLPGYERIFMTSG 297 (322)
Q Consensus 277 ~~~~~~~~---~~~~~~~~~~iSa 297 (322)
......+. ...+. +++.+|.
T Consensus 195 ~~l~~~I~~~L~~~gi-~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITSELVSNGV-QIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHBTTBC-CCCCCC-
T ss_pred HHHHHHHHHHHHHcCC-cEEecCC
Confidence 22222222 23444 4666664
No 216
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=3.5e-09 Score=94.99 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=72.0
Q ss_pred ccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeC
Q 020714 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (322)
Q Consensus 187 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK 266 (322)
..+.+||| +..+..... ..+..+|++|+|+|++++.+.. ..+..|+..+... ++|+++|+||
T Consensus 63 ~~~~iwD~--qer~~~l~~------------~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~---~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTK------------PHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKN---ELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSCEETT------------TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHT---TCEEEEEECC
T ss_pred CeEEEEEE--ccccceeec------------cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHC---CCCEEEEEeH
Confidence 47899999 444332111 3578999999999998764322 3455666655432 5789999999
Q ss_pred CCCCCChhH--HHHHHHHHhcCCCCCcEEEeecCCCCCHHHHHHHHHH
Q 020714 267 VDLVTKKKD--LLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLME 312 (322)
Q Consensus 267 ~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~~~i~~ 312 (322)
+|+...... ..+....+... .++++|||++|.|+++++.++..
T Consensus 125 ~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 125 MDLYDEDDLRKVRELEEIYSGL---YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTT---SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHcCCchhHHHHHHHHHHHhhh---CcEEEEECCCCcCHHHHHHHhcC
Confidence 999765332 22333333222 36999999999999999988754
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.97 E-value=4.9e-10 Score=102.57 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=76.8
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCC-------C-CCCcHHHHHHHHHHhccc-CCC
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR-------H-LTSPDSRVIRLIERMGKQ-APP 256 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~-------~-~~~~~~~~~~~l~~~~~~-~~~ 256 (322)
...+.+|||+|+..+... ....+..++++|+|+|++. . .......+..++..+... ..+
T Consensus 182 ~v~l~iwDtaGQe~~r~~------------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRK------------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 249 (354)
T ss_dssp --EEEEEEECCSTTGGGG------------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS
T ss_pred ceeeEEEECCCchhhhHH------------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC
Confidence 467899999999765331 1245789999999999961 1 122223455566665432 235
Q ss_pred CCcEEEEEeCCCCCCChh----------------------HHHHHH----HHHhcC----------CCCCcEEEeecCCC
Q 020714 257 KQKRVLCMNKVDLVTKKK----------------------DLLKVA----EQFKHL----------PGYERIFMTSGLKG 300 (322)
Q Consensus 257 ~~p~ivV~NK~Dl~~~~~----------------------~~~~~~----~~~~~~----------~~~~~~~~iSa~~g 300 (322)
+.|+++|+||+|+..... ..++.. ..+... .....+++|||++|
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 789999999999842110 111111 111111 11223689999999
Q ss_pred CCHHHHHHHHHHHhhhcCC
Q 020714 301 AGLKALTQYLMEQFKDLGL 319 (322)
Q Consensus 301 ~gi~el~~~i~~~l~~~~~ 319 (322)
.||+++|+++.+.+....+
T Consensus 330 ~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 330 KLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999998876543
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=1.4e-08 Score=94.49 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=92.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecC----CCCceeeeEEEEEeeC-CccEEEEeCCCcccCCCCCChhhHHH
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----KTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKV 211 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~ 211 (322)
.....++++|++|+|||||+|.|.|...+..+. ...+|+... ..... ...+.++|+||+.... .....
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~-----~~~~~ 139 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN-----FPPDT 139 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS-----CCHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH-----HHHHH
Confidence 456689999999999999999999843221111 111222111 11111 2468999999986421 11112
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC-----------ChhHHHHHH
Q 020714 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-----------KKKDLLKVA 280 (322)
Q Consensus 212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~-----------~~~~~~~~~ 280 (322)
.+.. + .+...+..++ ++... ...+...+...+... +.|+++|.||.|+.- ......+..
T Consensus 140 ~L~~-~-~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 140 YLEK-M-KFYEYDFFII-ISATR-FKKNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHHH-T-TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHH-c-CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 1211 1 1333355554 66632 122222444444432 357999999999751 112222333
Q ss_pred HHHh-----cC-CCCCcEEEeec--CCCCCHHHHHHHHHHHhhhc
Q 020714 281 EQFK-----HL-PGYERIFMTSG--LKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 281 ~~~~-----~~-~~~~~~~~iSa--~~g~gi~el~~~i~~~l~~~ 317 (322)
..+. +. .....++.+|+ .++.|++++.+.|.+.+.+.
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 3332 22 22346899999 66777999999999988764
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.91 E-value=1.2e-09 Score=101.18 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=81.6
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCC--------CCCcHHHHHHHHHHhccc
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--------LTSPDSRVIRLIERMGKQ 253 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~--------~~~~~~~~~~~l~~~~~~ 253 (322)
+...+..+.+|||+|+..+.. .....+..++++|+|+|+++- .......+..|+..+...
T Consensus 212 ~~~~~v~l~iwDtaGQe~~r~------------~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 212 FQVDKVNFHMFDVGGQRDERR------------KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEETTEEEEEEEECCSGGGGG------------GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eecCCccceecccchhhhhhh------------hhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 445678899999999976432 122457889999999999761 011223556677766543
Q ss_pred -CCCCCcEEEEEeCCCCCCChh---H---------------------------HHHHHHH-----HhcC--------CCC
Q 020714 254 -APPKQKRVLCMNKVDLVTKKK---D---------------------------LLKVAEQ-----FKHL--------PGY 289 (322)
Q Consensus 254 -~~~~~p~ivV~NK~Dl~~~~~---~---------------------------~~~~~~~-----~~~~--------~~~ 289 (322)
..++.|+++|+||+|+..... . ..+.... |... ..+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 346789999999999843111 0 0111111 2221 122
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHhhhcC
Q 020714 290 ERIFMTSGLKGAGLKALTQYLMEQFKDLG 318 (322)
Q Consensus 290 ~~~~~iSa~~g~gi~el~~~i~~~l~~~~ 318 (322)
.+++|||+++.||+++|+++.+.+....
T Consensus 360 -~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 360 -YPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp -EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 3679999999999999999998887653
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=1e-08 Score=90.41 Aligned_cols=128 Identities=15% Similarity=0.266 Sum_probs=68.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCeeeeec-------CCCCceeeeEEEEEeeC---CccEEEEeCCCcccCCCCCC-hh
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYS-HK 207 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~-~~ 207 (322)
.++++++|++|+|||||+|.|.+...+..+ ..+.+......+..... ...++++|++|+........ ..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999875433222 11112211222221111 23679999999865332111 11
Q ss_pred hHHH----HHHHHHh-----------hcccccEEEEEEeCC-CCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC
Q 020714 208 DVKV----RVESAWS-----------AVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (322)
Q Consensus 208 ~~~~----~~~~~~~-----------~~~~ad~ii~v~D~s-~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~ 271 (322)
.+.. .+...+. .+..+.+.++++|.. ++....+. ..++.+... .++|+|+||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~---~~l~~L~~~----~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL---EFMKHLSKV----VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH---HHHHHHHTT----SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH---HHHHHHHhc----CcEEEEEeccccCC
Confidence 1111 1111111 123458889999965 33333332 334444322 56999999999987
Q ss_pred Ch
Q 020714 272 KK 273 (322)
Q Consensus 272 ~~ 273 (322)
..
T Consensus 155 ~~ 156 (270)
T 3sop_A 155 LE 156 (270)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.90 E-value=2.3e-09 Score=96.19 Aligned_cols=122 Identities=21% Similarity=0.176 Sum_probs=78.0
Q ss_pred cCCCCceEEEccccCCCCCC-C--------------------CCCCCCCCCC---hhhHHHHHHhhCCeEEEeec-cccc
Q 020714 42 TENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKG 96 (322)
Q Consensus 42 ~~~~~d~v~~~~da~~p~~~-~--------------------~k~dl~~~~~---~~~w~~~~~~~~~~i~f~~~-~~~~ 96 (322)
+...+|+++-+.|++.|.++ + ||+||.+... .+.|...+... ..++..|+ ++.+
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~g 159 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMG 159 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTT
T ss_pred ccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcC
Confidence 34479999999999887643 2 8999876543 45677776655 66777887 7777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCC-----
Q 020714 97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----- 171 (322)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~----- 171 (322)
..+++.. ..+-.++++|++|+|||||+|.|.+...+..+...
T Consensus 160 v~~lf~~---------------------------------l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~ 206 (301)
T 1u0l_A 160 IEELKEY---------------------------------LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQR 206 (301)
T ss_dssp HHHHHHH---------------------------------HSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------
T ss_pred HHHHHHH---------------------------------hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCC
Confidence 7666111 01335889999999999999999986544433222
Q ss_pred --CceeeeEEEEEeeCCccEEEEeCCCcccC
Q 020714 172 --NTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (322)
Q Consensus 172 --~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 200 (322)
++|..... ... .....++|+||+...
T Consensus 207 g~~~t~~~~~--~~~-~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 207 GRHTTTTAQL--LKF-DFGGYVVDTPGFANL 234 (301)
T ss_dssp ---CCCSCCE--EEC-TTSCEEESSCSSTTC
T ss_pred CCCceeeeEE--EEc-CCCCEEEECcCCCcc
Confidence 23332221 111 123489999998644
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.89 E-value=2.6e-09 Score=103.57 Aligned_cols=63 Identities=29% Similarity=0.369 Sum_probs=43.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCeeeeecCCCCceeeeEEEEE-------eeCCccEEEEeCCCcccCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-------TKADTQICIFDTPGLMLNK 201 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~l~DtpG~~~~~ 201 (322)
....+|+|+|.||||||||+|+|++..... ..+++|.+.+.+.+ ...+..+.|+||||+....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 456889999999999999999999976431 23333333222222 1246789999999997543
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.85 E-value=5.5e-10 Score=104.89 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCC------------------------ceeeeE----EEEEee
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTN------------------------TTTHEV----LGVMTK 184 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~------------------------~t~~~~----~~~~~~ 184 (322)
+..|+++|.+||||||+++.|.. .++..+...+. ++.+.. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998864 23332221110 222110 000001
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCC-c-EEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ-K-RVL 262 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~-p-~iv 262 (322)
.+.++.|+||||.... .......+. .+..+..+|.+++|+|+..+. + .......+.. .. | ..+
T Consensus 179 ~~~D~vIIDT~G~~~~-----~~~l~~~l~-~i~~~~~~d~vllVvda~~g~---~--~~~~~~~~~~----~~~~i~gv 243 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-----EKGLLEEMK-QIKEITNPDEIILVIDGTIGQ---Q--AGIQAKAFKE----AVGEIGSI 243 (432)
T ss_dssp SSCSEEEEECCCSCSS-----HHHHHHHHH-HTTSSSCCSEEEEEEEGGGGG---G--HHHHHHHHHT----TSCSCEEE
T ss_pred hCCCEEEEcCCCCccc-----cHHHHHHHH-HHHHHhcCcceeEEeeccccH---H--HHHHHHHHhh----cccCCeEE
Confidence 4678999999998631 111112222 233445789999999986532 2 2233344432 13 3 789
Q ss_pred EEeCCCCCCChhHHHHHHHHHh-------------cCCCCCcEEEeecCCCCC-HHHHHHHHHHHh
Q 020714 263 CMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQF 314 (322)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSa~~g~g-i~el~~~i~~~l 314 (322)
|+||+|..............+. +...+.+..++|+..|.| +..|++.+.+.+
T Consensus 244 VlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 244 IVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp EEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred EEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999998654332222222211 111222344567777777 776666665443
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.73 E-value=1.1e-07 Score=89.03 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=83.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCC----------------ceeeeEEE-------------EE
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTN----------------TTTHEVLG-------------VM 182 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~----------------~t~~~~~~-------------~~ 182 (322)
.+..|+++|.+||||||+++.|. +.++..+...+. ........ ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998886 344433222111 10000000 00
Q ss_pred eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (322)
Q Consensus 183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv 262 (322)
...+.++.|+||||..... ......+... .....+|.+++|+|+..+ ++ .......+.... .+..+
T Consensus 179 ~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~~~pd~vlLVvDA~~g---q~--a~~~a~~f~~~~---~i~gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED-----KALIEEMKQI-SNVIHPHEVILVIDGTIG---QQ--AYNQALAFKEAT---PIGSI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC-----HHHHHHHHHH-HHHHCCSEEEEEEEGGGG---GG--HHHHHHHHHHSC---TTEEE
T ss_pred HhCCCCEEEEECCCcccch-----HHHHHHHHHH-HHhhcCceEEEEEeCCCc---hh--HHHHHHHHHhhC---CCeEE
Confidence 0134789999999975321 2222223222 233457899999999653 22 122334443221 23679
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
|+||+|.......... +....+. |+.+++. |+++++|
T Consensus 245 IlTKlD~~~~gG~~ls----~~~~~g~-PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALS----AVAATGA-PIKFIGT--GEKIDDI 281 (443)
T ss_dssp EEECCSSCSSHHHHHH----HHHTTCC-CEEEEEC--SSSTTCE
T ss_pred EEECCCCcccccHHHH----HHHHHCC-CEEEEEc--CCChHHh
Confidence 9999999765443322 2223455 5888885 8877654
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=5.8e-08 Score=86.12 Aligned_cols=94 Identities=16% Similarity=0.296 Sum_probs=70.9
Q ss_pred HHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCC
Q 020714 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (322)
Q Consensus 211 ~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (322)
...++.+..+..+|++++|+|+..+.+.....+..++ .++|.++|+||+|+.+. ...+.+.+.+.. .+.
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~-~~~~~~~~~~~~-~g~- 80 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA-AVTQQWKEHFEN-QGI- 80 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH-HHHHHHHHHHHT-TTC-
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH-HHHHHHHHHHHh-cCC-
Confidence 3567777889999999999999887766543343333 25789999999999873 334444555543 344
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 291 RIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 291 ~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+++++||++|.|++++++.+.+.+.
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cEEEEECCCcccHHHHHHHHHHHHH
Confidence 6999999999999999999888775
No 226
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.67 E-value=4.2e-08 Score=87.91 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=61.8
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh-H-HHHHHHHHhcCCCCCcEEEee
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-D-LLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~iS 296 (322)
.+.++|++++|+|++++.... ..+..|+..+... ++|+++|+||+|+.+... . ..+....+.. .+. +++++|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~-~~l~~~l~~~~~~---~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~g~-~~~~~S 149 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNN-YLLDNMLVVYEYF---KVEPVIVFNKIDLLNEEEKKELERWISIYRD-AGY-DVLKVS 149 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCH-HHHHHHHHHHHHT---TCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-TTC-EEEECC
T ss_pred HHHhcCEEEEEEECCCCCCCH-HHHHHHHHHHHhC---CCCEEEEEEcccCCCccccHHHHHHHHHHHH-CCC-eEEEEE
Confidence 578999999999997654232 3455666655443 578999999999986532 1 2333333333 355 699999
Q ss_pred cCCCCCHHHHHHHHHH
Q 020714 297 GLKGAGLKALTQYLME 312 (322)
Q Consensus 297 a~~g~gi~el~~~i~~ 312 (322)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988753
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.55 E-value=1.3e-07 Score=87.08 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=65.0
Q ss_pred HHHHHHhhc-ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCCh---hHHHHHHHHHhcCC
Q 020714 212 RVESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLP 287 (322)
Q Consensus 212 ~~~~~~~~~-~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~---~~~~~~~~~~~~~~ 287 (322)
.|.+.+..+ ..++++++|+|+++...... ..+..+- .+.|+++|+||+|+.+.. ....++........
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~----~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFI----PGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCC----SSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchh----hHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 355666655 67789999999976442221 2222221 256899999999998653 23334444434444
Q ss_pred CC--CcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 288 GY--ERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 288 ~~--~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+. .+++.+||++|.|++++++.|.+...
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 54 36899999999999999999987654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.53 E-value=3.8e-07 Score=85.31 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHh------CCeeeeecCC----------------CCceeeeEE-----------EE--E
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRK----------------TNTTTHEVL-----------GV--M 182 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~----------------~~~t~~~~~-----------~~--~ 182 (322)
.+..|+++|++|+||||++..|. +.++..+... .+....... .. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46788999999999999998886 3333221111 111000000 00 0
Q ss_pred eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 020714 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (322)
Q Consensus 183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~iv 262 (322)
...+.++.|+||||...+.. . ......+....... ..+.+++|+|+..+. ... .....+.... .+..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~--d-~~lm~el~~i~~~~-~pd~vlLVlDa~~gq--~a~---~~a~~f~~~~---~~~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGE--E-TKLLEEMKEMYDVL-KPDDVILVIDASIGQ--KAY---DLASRFHQAS---PIGSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCC--T-THHHHHHHHHHHHH-CCSEEEEEEEGGGGG--GGH---HHHHHHHHHC---SSEEE
T ss_pred HhcCCCEEEEECCCCccccC--C-HHHHHHHHHHHHhh-CCcceEEEEeCccch--HHH---HHHHHHhccc---CCcEE
Confidence 01257899999999753111 1 11222233322222 458999999996531 112 2223333221 23789
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHH
Q 020714 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK 304 (322)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~ 304 (322)
|+||+|.............. .+. |+.+++. |++++
T Consensus 244 IlTKlD~~a~~G~als~~~~----~g~-Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVA----TGA-TIKFIGT--GEKID 278 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHH----HTC-EEEEEEC--CSSSS
T ss_pred EEecccccccchHHHHHHHH----HCC-CEEEEEC--CCChH
Confidence 99999987554433332332 233 6888885 87764
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.52 E-value=2.1e-07 Score=85.65 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=63.9
Q ss_pred HHHHHHhhc-ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCC
Q 020714 212 RVESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLP 287 (322)
Q Consensus 212 ~~~~~~~~~-~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~ 287 (322)
.|.+.+..+ ..++++++|+|+++ .+..+...+..+. .+.|+++|+||+|+.+... ...++........
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d----~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFD----FNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTS----HHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCcEEEEEEECCC----CcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 455555554 45679999999964 2333333344432 2578999999999976532 2333333333334
Q ss_pred CC--CcEEEeecCCCCCHHHHHHHHHHHhh
Q 020714 288 GY--ERIFMTSGLKGAGLKALTQYLMEQFK 315 (322)
Q Consensus 288 ~~--~~~~~iSa~~g~gi~el~~~i~~~l~ 315 (322)
+. .+++++||++|.|++++++.|.+...
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 44 26899999999999999999987653
No 230
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.52 E-value=4.1e-07 Score=76.19 Aligned_cols=104 Identities=9% Similarity=0.032 Sum_probs=62.4
Q ss_pred HHHHHh-hcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccC-CCCCcEEEEEeCC-CCCCChhHHHHHHHHHh--cC
Q 020714 213 VESAWS-AVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQA-PPKQKRVLCMNKV-DLVTKKKDLLKVAEQFK--HL 286 (322)
Q Consensus 213 ~~~~~~-~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~-~~~~p~ivV~NK~-Dl~~~~~~~~~~~~~~~--~~ 286 (322)
++..|. ++..+|++|||+|.++.....-. ++..+...+.... ..+.|++|.+||. |+...-. ..++.+.+. ..
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-~~EI~e~L~L~~l 193 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNLL 193 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-HHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-HHHHHHHcCCcCC
Confidence 444443 45788999999999876433211 2211122222221 2568999999995 7754322 122222211 11
Q ss_pred CCCCcEEEeecCCCCCHHHHHHHHHHHhhhc
Q 020714 287 PGYERIFMTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 287 ~~~~~~~~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
...-.+..|||++|+|+.+-++||.+.+..+
T Consensus 194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 194 NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 1112589999999999999999999887654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.36 E-value=3.8e-06 Score=82.31 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=42.6
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh-cc-cccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-VN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-~~-~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
...+.++|.||+...............+...+.. +. ...+++++++....... .....++..+... +.+.|+|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~--~~~l~la~~v~~~---g~rtI~V 220 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT--TEALSMAQEVDPE---GDRTIGI 220 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT--CHHHHHHHHHCSS---CCSEEEE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc--HHHHHHHHHHhhc---CCceEEE
Confidence 3568999999986532211112223334444444 23 33556666654332222 2344566666543 4569999
Q ss_pred EeCCCCCCC
Q 020714 264 MNKVDLVTK 272 (322)
Q Consensus 264 ~NK~Dl~~~ 272 (322)
+||.|+...
T Consensus 221 lTK~Dlv~~ 229 (608)
T 3szr_A 221 LTKPDLVDK 229 (608)
T ss_dssp EECGGGSSS
T ss_pred ecchhhcCc
Confidence 999999854
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.28 E-value=2.4e-06 Score=76.19 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCCchhHHHHHHh------CCeeeeecCCCCce--------------eeeEEE-------------E--Ee
Q 020714 139 SVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT--------------THEVLG-------------V--MT 183 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~------~~~~~~~~~~~~~t--------------~~~~~~-------------~--~~ 183 (322)
+..++++|.+|+||||+++.|. +.++..+...+... ...... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999998876 33333222221100 000000 0 00
Q ss_pred eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-EEE
Q 020714 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVL 262 (322)
Q Consensus 184 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~iv 262 (322)
..+.++.|+||||..... ........+.. +.....+|.+++|+|+..+ .+ .....+.+... .+ ..+
T Consensus 178 ~~~~D~ViIDTpg~~~~~---~~~~l~~el~~-i~~~~~~d~vllVvda~~g---~~--~~~~~~~~~~~----~~i~gv 244 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG---EEAALLEEMKN-IYEAIKPDEVTLVIDASIG---QK--AYDLASKFNQA----SKIGTI 244 (297)
T ss_dssp HTTCSEEEEECCCSCCTT---CHHHHHHHHHH-HHHHHCCSEEEEEEEGGGG---GG--HHHHHHHHHHT----CTTEEE
T ss_pred hCCCCEEEEeCCCCcccc---cHHHHHHHHHH-HHHHhcCCEEEEEeeCCch---HH--HHHHHHHHHhh----CCCCEE
Confidence 146689999999986310 01111111111 1223467999999998532 21 22233333321 23 678
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHHH
Q 020714 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307 (322)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el~ 307 (322)
|+||+|......... .+....+. |+.+++ +|++++++.
T Consensus 245 Vlnk~D~~~~~g~~~----~~~~~~~~-pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 245 IITKMDGTAKGGGAL----SAVAATGA-TIKFIG--TGEKIDELE 282 (297)
T ss_dssp EEECGGGCTTHHHHH----HHHHTTTC-CEEEEE--CSSSTTCEE
T ss_pred EEeCCCCCcchHHHH----HHHHHHCc-CEEEEe--CCCChhhcc
Confidence 999999865433222 23334454 577877 788887654
No 233
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.22 E-value=4.5e-07 Score=79.46 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=63.1
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCc
Q 020714 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (322)
Q Consensus 212 ~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
.++..+..+..+|++++|+|+..+.+.....+. ++ ++|.++|+||+|+.+. ...+.+.+.+.. .+. +
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~-~~~~~~~~~~~~-~g~-~ 77 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADE-KTTKKWVEFFKK-QGK-R 77 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCH-HHHHHHHHHHHH-TTC-C
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCH-HHHHHHHHHHHH-cCC-e
Confidence 345666778999999999999877655432221 11 5789999999999874 334445555544 244 4
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQ 313 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~ 313 (322)
+ ++||++|.|+++|+++|...
T Consensus 78 v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 78 V-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp E-EECCTTSCHHHHHHHHCCCT
T ss_pred E-EEECCCCcCHHHHHHHHHHh
Confidence 7 99999999999999887543
No 234
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.22 E-value=2.2e-06 Score=75.25 Aligned_cols=98 Identities=8% Similarity=0.035 Sum_probs=60.1
Q ss_pred hcccccEEEEEEeCCCCCCCcHH-HHHHHHHHhcccC-CCCCcEEEEEeC-CCCCCChhHHHHHHHHHh--cCCCCCcEE
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQA-PPKQKRVLCMNK-VDLVTKKKDLLKVAEQFK--HLPGYERIF 293 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~-~~~~~l~~~~~~~-~~~~p~ivV~NK-~Dl~~~~~~~~~~~~~~~--~~~~~~~~~ 293 (322)
++..+|++|+|+|.+++...... ++.++...+.... ..+.|++|.+|| .|+...-. ..++.+.+. .....-.+.
T Consensus 207 Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L~~l~r~W~Iq 285 (312)
T 3l2o_B 207 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNLLNHPWLVQ 285 (312)
T ss_dssp HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTGGGGCSCEEEE
T ss_pred HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCCccCCCcEEEE
Confidence 45778999999999876544322 2221112222111 236789999997 58865422 112222211 111112489
Q ss_pred EeecCCCCCHHHHHHHHHHHhhhc
Q 020714 294 MTSGLKGAGLKALTQYLMEQFKDL 317 (322)
Q Consensus 294 ~iSa~~g~gi~el~~~i~~~l~~~ 317 (322)
.|||.+|+|+.|-++||.+.+..+
T Consensus 286 ~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 286 DTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp EEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ecccCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999988654
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.15 E-value=8.5e-06 Score=72.85 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCc-e---------eeeEEEEEe------------------
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-T---------THEVLGVMT------------------ 183 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~-t---------~~~~~~~~~------------------ 183 (322)
.+-.++++|++|+||||+++.|.+ +++...+..... . ......++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998863 222211111100 0 000000010
Q ss_pred -eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHH--hhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcE
Q 020714 184 -KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW--SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260 (322)
Q Consensus 184 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (322)
..+..+.++||+|......... .... ..+.++ ......+.+++++|+..+ .+ +...+..+..... ..
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~-~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~---~~--~~~~~~~~~~~~~---~t 250 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLM-EELK-KVKRAIAKADPEEPKEVWLVLDAVTG---QN--GLEQAKKFHEAVG---LT 250 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHH-HHHH-HHHHHHHHHCTTCCSEEEEEEETTBC---TH--HHHHHHHHHHHHC---CS
T ss_pred HhCCCCEEEecCCCCCCchHHHH-HHHH-HHHHHHHHhhcCCCCeEEEEEcHHHH---HH--HHHHHHHHHHHcC---Cc
Confidence 1234678999999853221111 1111 111111 123456778889998543 11 2233333332111 25
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 261 VLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 261 ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
++++||.|..............+ +. |+.+++ +|+++++|
T Consensus 251 ~iivTh~d~~a~gg~~l~i~~~~----~~-pi~~ig--~Ge~~~dl 289 (304)
T 1rj9_A 251 GVIVTKLDGTAKGGVLIPIVRTL----KV-PIKFVG--VGEGPDDL 289 (304)
T ss_dssp EEEEECTTSSCCCTTHHHHHHHH----CC-CEEEEE--CSSSTTCE
T ss_pred EEEEECCcccccccHHHHHHHHH----CC-CeEEEe--CCCChhhc
Confidence 89999999764433333333332 33 577777 67766654
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.11 E-value=4.5e-06 Score=75.40 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=80.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC------eeeeecCCC----------------CceeeeEEEEE------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKT----------------NTTTHEVLGVM------------ 182 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~------~~~~~~~~~----------------~~t~~~~~~~~------------ 182 (322)
..+-.++++|++|+||||+++.|.+. ++...+... +.....+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45778999999999999999988742 221111110 00000000000
Q ss_pred -eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 020714 183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (322)
Q Consensus 183 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (322)
...+..+.++||+|......... ..+ ..+.++ -..|-.++++|...+ + .....+..+..... ..+
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~-~eL-~~i~ra----l~~de~llvLDa~t~---~--~~~~~~~~~~~~~~---it~ 272 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLM-DEM-KKIARV----TKPNLVIFVGDALAG---N--AIVEQARQFNEAVK---IDG 272 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHH-HHH-HHHHHH----HCCSEEEEEEEGGGT---T--HHHHHHHHHHHHSC---CCE
T ss_pred HHhccchhhHHhhccchhHHHHHH-HHH-HHHHHH----hcCCCCEEEEecHHH---H--HHHHHHHHHHHhcC---CCE
Confidence 01245678999999864322111 111 112222 235888999998543 2 23344444432211 258
Q ss_pred EEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 262 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
+++||.|............... +. |+.+++ +|++++++
T Consensus 273 iilTKlD~~a~~G~~l~~~~~~----~~-pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 273 IILTKLDADARGGAALSISYVI----DA-PILFVG--VGQGYDDL 310 (328)
T ss_dssp EEEECGGGCSCCHHHHHHHHHH----TC-CEEEEE--CSSSTTCE
T ss_pred EEEeCcCCccchhHHHHHHHHH----CC-CEEEEe--CCCCcccc
Confidence 9999999754434433333332 33 688888 88888654
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.08 E-value=3.6e-05 Score=72.81 Aligned_cols=150 Identities=17% Similarity=0.257 Sum_probs=78.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCce-------e---eeEEEEEe-----------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------T---HEVLGVMT----------------- 183 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~t-------~---~~~~~~~~----------------- 183 (322)
..+-.++|+|.+|+|||||++.|.+ +.+...+...... . .....++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 4566899999999999999998864 2222211111100 0 00000110
Q ss_pred --eCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCC
Q 020714 184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256 (322)
Q Consensus 184 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~ 256 (322)
..+.++.|+||+|..... ......+......+ ...+-+++|+|+..+ ++ ....++.+.....
T Consensus 371 a~~~~~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG---q~--al~~ak~f~~~~~- 439 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---QN--AVSQAKLFHEAVG- 439 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT---HH--HHHHHHHHHHHTC-
T ss_pred HHhcCCCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc---HH--HHHHHHHHHhhcC-
Confidence 134678999999985321 11111111111111 224678889998543 22 2233344432211
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 257 ~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
...+|+||.|..........+...+ +. ++.++. +|+++++|
T Consensus 440 --itgvIlTKLD~takgG~~lsi~~~~----~~-PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 440 --LTGITLTKLDGTAKGGVIFSVADQF----GI-PIRYIG--VGERIEDL 480 (503)
T ss_dssp --CSEEEEECGGGCSCCTHHHHHHHHH----CC-CEEEEE--CSSSGGGE
T ss_pred --CCEEEEEcCCCcccccHHHHHHHHH----CC-CEEEEe--cCCChhhc
Confidence 1578999999754434444433333 33 577766 77777664
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.98 E-value=3.6e-05 Score=72.12 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=66.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHh-------CCeeeeecCCCCcee--------------eeEE-------------E--E
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV-------GTKVAAVSRKTNTTT--------------HEVL-------------G--V 181 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~-------~~~~~~~~~~~~~t~--------------~~~~-------------~--~ 181 (322)
.+..|+++|.+||||||++..|. +.++..+...+.... +... . .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999998876 545443332221100 0000 0 0
Q ss_pred EeeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCc-E
Q 020714 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-R 260 (322)
Q Consensus 182 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p-~ 260 (322)
....+.++.|+||||..... ......+.. ...+..++.+++|+|+..+ .+ .......+... .+ .
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~-----~~l~~~L~~-~~~~~~p~~vllVvda~~g---~~--~~~~~~~f~~~----l~i~ 243 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD-----EAMMDEIKQ-VHASINPVETLFVVDAMTG---QD--AANTAKAFNEA----LPLT 243 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC-----HHHHHHHHH-HHHHSCCSEEEEEEETTBC---TT--HHHHHHHHHHH----SCCC
T ss_pred HHhCCCCEEEEECCCccccc-----HHHHHHHHH-HHHhhcCcceeEEeecchh---HH--HHHHHHHHhcc----CCCe
Confidence 01146789999999975321 111111221 1234467899999998643 12 12223333321 22 3
Q ss_pred EEEEeCCCCCCCh
Q 020714 261 VLCMNKVDLVTKK 273 (322)
Q Consensus 261 ivV~NK~Dl~~~~ 273 (322)
-+|+||+|.....
T Consensus 244 gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 244 GVVLTKVDGDARG 256 (433)
T ss_dssp CEEEECTTSSSCC
T ss_pred EEEEecCCCCccH
Confidence 4799999986443
No 239
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.98 E-value=9e-06 Score=76.26 Aligned_cols=63 Identities=24% Similarity=0.387 Sum_probs=41.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC---------------eeeeecCCCCceeeeEEEEEeeC-----------CccEE
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT---------------KVAAVSRKTNTTTHEVLGVMTKA-----------DTQIC 190 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~ 190 (322)
.+...|+|+|.+++|||||+|.|++. .....+. .+++...+.+++... ...+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~-~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSW-RGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCS-CCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecC-CCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 34567899999999999999999863 1111111 124444444543332 24689
Q ss_pred EEeCCCcccC
Q 020714 191 IFDTPGLMLN 200 (322)
Q Consensus 191 l~DtpG~~~~ 200 (322)
++||||+...
T Consensus 144 llDTeG~~~~ 153 (447)
T 3q5d_A 144 LMDTQGTFDS 153 (447)
T ss_dssp EEEEECCCSS
T ss_pred EEcCCccccc
Confidence 9999998643
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.83 E-value=0.00026 Score=63.63 Aligned_cols=150 Identities=18% Similarity=0.223 Sum_probs=76.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCCCc--------ee-----eeEEEEE---------------
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT--------TT-----HEVLGVM--------------- 182 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~~~--------t~-----~~~~~~~--------------- 182 (322)
..+-.++++|++|+||||++..|.+ .++......+.. .. .....++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 3456789999999999999887652 232222111100 00 0001111
Q ss_pred -----eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhh-----cccccEEEEEEeCCCCCCCcHHHHHHHHHHhcc
Q 020714 183 -----TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-----VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252 (322)
Q Consensus 183 -----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-----~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~ 252 (322)
...+.++.|+||||..... ......+...... -..+|.+++|+|+..+ ...+ ...+.+..
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~----~~~l-~~~~~~~~ 252 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG----QNGV-IQAEEFSK 252 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT----HHHH-HHHHHHTT
T ss_pred HHHHHHhcCCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc----HHHH-HHHHHHhh
Confidence 0135789999999976310 1111111111111 1347899999998531 2222 22334432
Q ss_pred cCCCCCcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 253 ~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
. -...-+|+||.|..............+ +. |+.+++ .|++++++
T Consensus 253 ~---~~i~GvVltk~d~~~~~g~~~~~~~~~----~~-Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 253 V---ADVSGIILTKMDSTSKGGIGLAIKELL----NI-PIKMIG--VGEKVDDL 296 (320)
T ss_dssp T---SCCCEEEEECGGGCSCTTHHHHHHHHH----CC-CEEEEE--CSSSTTCE
T ss_pred c---CCCcEEEEeCCCCCCchhHHHHHHHHH----Cc-CEEEEe--CCCCcccc
Confidence 1 112458999999754433333333332 33 566665 56666554
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.81 E-value=0.00017 Score=64.38 Aligned_cols=149 Identities=16% Similarity=0.230 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC------CeeeeecCCC----------------Cceeee-------EE----EE--E
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT----------------NTTTHE-------VL----GV--M 182 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~------~~~~~~~~~~----------------~~t~~~-------~~----~~--~ 182 (322)
.+-.++++|++|+||||++..|.+ .++.-..... +..... .. .. .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 456789999999999999987753 2222111110 000000 00 00 0
Q ss_pred eeCCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhc-----ccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCC
Q 020714 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257 (322)
Q Consensus 183 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~ 257 (322)
...+.++.++||||... ........+......+ ..++.+++|+|+.. . ...+ ...+.+....
T Consensus 183 ~~~~~dvvIiDtpg~~~-----~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t---~-~~~l-~~a~~~~~~~--- 249 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLH-----TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---G-QNGL-VQAKIFKEAV--- 249 (306)
T ss_dssp HHTTCSEEEEEECCCCS-----CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---H-HHHH-HHHHHHHHHS---
T ss_pred HhcCCCEEEEECCCchh-----hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC---C-HHHH-HHHHHHHhcC---
Confidence 12356799999999531 1122222222222222 34688999999852 1 1112 2223332211
Q ss_pred CcEEEEEeCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 258 ~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
...-+|+||.|............... +. |+.+++ .|++++++
T Consensus 250 ~i~gvVlTk~D~~~~gG~~l~~~~~~----~~-Pi~~i~--~Ge~~~dl 291 (306)
T 1vma_A 250 NVTGIILTKLDGTAKGGITLAIAREL----GI-PIKFIG--VGEKAEDL 291 (306)
T ss_dssp CCCEEEEECGGGCSCTTHHHHHHHHH----CC-CEEEEE--CSSSGGGE
T ss_pred CCCEEEEeCCCCccchHHHHHHHHHH----CC-CEEEEe--CCCChhhc
Confidence 12467899999865544443333333 33 577776 56666654
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.79 E-value=1.3e-05 Score=71.67 Aligned_cols=86 Identities=17% Similarity=0.373 Sum_probs=60.3
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh---HHHHHHHHHhcCCCCCcEEEe
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMT 295 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~i 295 (322)
.+.++|.+++|+|+..+..... .+..++...... ++|.++|+||+|+.+... ....+...+.. .+. +++.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-~g~-~v~~~ 156 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-IGY-DVYLT 156 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-HTC-CEEEC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHh-CCC-eEEEE
Confidence 4688899999999976655544 455555544333 567999999999987643 23444444433 244 69999
Q ss_pred ecCCCCCHHHHHHHH
Q 020714 296 SGLKGAGLKALTQYL 310 (322)
Q Consensus 296 Sa~~g~gi~el~~~i 310 (322)
||.+|.|+++|++.+
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999999887643
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.77 E-value=3.1e-05 Score=68.97 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=73.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC-------CeeeeecCCCC----------------ceeeeEE-------EEEeeCCc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG-------TKVAAVSRKTN----------------TTTHEVL-------GVMTKADT 187 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~-------~~~~~~~~~~~----------------~t~~~~~-------~~~~~~~~ 187 (322)
.+-.++++|++|+||||++..|.+ .++..+...+. ....... ......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 456889999999999999987752 23322221110 0000000 00011456
Q ss_pred cEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q 020714 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (322)
Q Consensus 188 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~ 267 (322)
++.|+||||..... ......+...+. ....+.+++|+|++.. ...+..+...+... ...-+|+||.
T Consensus 184 dlvIiDT~G~~~~~-----~~~~~el~~~l~-~~~~~~~~lVl~at~~----~~~~~~~~~~~~~l----~~~giVltk~ 249 (296)
T 2px0_A 184 DHVFVDTAGRNFKD-----PQYIDELKETIP-FESSIQSFLVLSATAK----YEDMKHIVKRFSSV----PVNQYIFTKI 249 (296)
T ss_dssp SEEEEECCCCCTTS-----HHHHHHHHHHSC-CCTTEEEEEEEETTBC----HHHHHHHTTTTSSS----CCCEEEEECT
T ss_pred CEEEEeCCCCChhh-----HHHHHHHHHHHh-hcCCCeEEEEEECCCC----HHHHHHHHHHHhcC----CCCEEEEeCC
Confidence 89999999986321 111111222211 1235778899988542 12333334433321 1245778999
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCH
Q 020714 268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (322)
Q Consensus 268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi 303 (322)
|.......... +....+. |+.+++ .|+++
T Consensus 250 D~~~~~g~~~~----~~~~~~~-pi~~i~--~ge~v 278 (296)
T 2px0_A 250 DETTSLGSVFN----ILAESKI-GVGFMT--NGQNV 278 (296)
T ss_dssp TTCSCCHHHHH----HHHTCSC-CCSEEC--CSSCT
T ss_pred CcccchhHHHH----HHHHHCc-CEEEEE--CCCCC
Confidence 98754332222 2233444 455554 56665
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.77 E-value=0.00033 Score=63.85 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+-.++++|++|+||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 466899999999999999998864
No 245
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.70 E-value=0.0004 Score=61.85 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+-.++++|++|+||||+++.|.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3466889999999999999998864
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.49 E-value=0.0009 Score=62.35 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+.++.|+||||..... ......+... .....+|.+++|+|+..+ .+ .......+.... ...-+|+
T Consensus 179 ~~~DvVIIDTaG~l~~d-----~~l~~el~~i-~~~~~pd~vlLVvDa~tg---q~--av~~a~~f~~~l---~i~GVIl 244 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID-----EPLMGELARL-KEVLGPDEVLLVLDAMTG---QE--ALSVARAFDEKV---GVTGLVL 244 (425)
T ss_dssp TTCSEEEEECCCCSSCC-----HHHHHHHHHH-HHHHCCSEEEEEEEGGGT---TH--HHHHHHHHHHHT---CCCEEEE
T ss_pred CCCCEEEEcCCCccccc-----HHHHHHHHHh-hhccCCceEEEEEeccch---HH--HHHHHHHHHhcC---CceEEEE
Confidence 45689999999975321 1111112111 122357889999998542 22 223333333211 1256899
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
||.|.............. .+. |+.+++ .|+.++++
T Consensus 245 TKlD~~~~~g~alsi~~~----~g~-PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 245 TKLDGDARGGAALSARHV----TGK-PIYFAG--VSEKPEGL 279 (425)
T ss_dssp ESGGGCSSCHHHHHHHHH----HCC-CEEEEE--CSSSGGGE
T ss_pred eCcCCcccHHHHHHHHHH----HCC-CEEEEe--CCCChhhc
Confidence 999976543333222222 233 577766 45556554
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.35 E-value=0.00086 Score=61.01 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=55.4
Q ss_pred hcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCChh--HHHHHHHHHhcCCCCCcEEEee
Q 020714 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTS 296 (322)
Q Consensus 219 ~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iS 296 (322)
.+.++|.+++|... .+. .....+..++...... ++|.++|+||+|+.+... ....+...+.. .|. +++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~-~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~-~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPE-LSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGY-RVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTT-CCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTC-CEEECB
T ss_pred HHhcCCEEEEEEeC-CCC-CCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCC-cEEEEe
Confidence 46788999977554 443 3333444454433222 456899999999987532 13344455443 455 599999
Q ss_pred cCCCCCHHHHHHHH
Q 020714 297 GLKGAGLKALTQYL 310 (322)
Q Consensus 297 a~~g~gi~el~~~i 310 (322)
|++|.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999988754
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=4.1e-05 Score=63.88 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCee-eeecCCCCceeeeEEEEEeeCCccEEEEeCCCc
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 197 (322)
.+-.++|+|++|+|||||++.|.+... ......+.+|+....+. .+|..+.++|...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 345688999999999999999986432 12233444555433221 34555566665443
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.19 E-value=0.00062 Score=60.43 Aligned_cols=101 Identities=12% Similarity=0.172 Sum_probs=48.8
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
.+.++.|+||||.... . ......+......+ .+|.+++|+|.... .+ .....+.+.... ...-+|+
T Consensus 179 ~~~D~viiDtpp~~~~----d-~~~~~~l~~~~~~~-~~~~~~lv~~~~~~---~~--~~~~~~~~~~~~---~i~givl 244 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI----D-EPLMGELARLKEVL-GPDEVLLVLDAMTG---QE--ALSVARAFDEKV---GVTGLVL 244 (295)
T ss_dssp HTCCEEEEECCCCSSC----C-HHHHHHHHHHHHHH-CCSEEEEEEEGGGT---HH--HHHHHHHHHHHT---CCCEEEE
T ss_pred CCCCEEEEeCCCCccc----c-HHHHHHHHHHhhhc-CCCEEEEEEeCCCc---HH--HHHHHHHHhhcC---CCCEEEE
Confidence 3568999999987522 1 11112222222222 46888899998531 11 222333333211 1245899
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCCCcEEEeecCCCCCHHHH
Q 020714 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (322)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSa~~g~gi~el 306 (322)
||.|.............. .+. |+.+++ .|++++++
T Consensus 245 nk~d~~~~~g~~~~~~~~----~~~-pi~~i~--~g~~~~dl 279 (295)
T 1ls1_A 245 TKLDGDARGGAALSARHV----TGK-PIYFAG--VSEKPEGL 279 (295)
T ss_dssp ECGGGCSSCHHHHHHHHH----HCC-CEEEEC--------CC
T ss_pred ECCCCCccHHHHHHHHHH----HCc-CEEEEe--CCCCcccc
Confidence 999986543333332222 233 577776 56666544
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.17 E-value=0.00045 Score=57.29 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=43.0
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEEe
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~N 265 (322)
..++.++|||+... . .+...+..+|.+++++..+... ..-..+...++.+... .++.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~-------~-------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-------V-------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAY-SRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSS-------H-------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCG-GGCCEEEEEEC
T ss_pred CCCEEEEECCCCCC-------H-------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHh-CCCCcEEEEEe
Confidence 47899999997641 1 1112345579999999886533 2222444555554422 23456799999
Q ss_pred CCCCC
Q 020714 266 KVDLV 270 (322)
Q Consensus 266 K~Dl~ 270 (322)
++|..
T Consensus 139 ~~~~~ 143 (206)
T 4dzz_A 139 RKIEM 143 (206)
T ss_dssp SBCTT
T ss_pred ccCCC
Confidence 99954
No 251
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.05 E-value=0.0057 Score=54.72 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...++|+|+.|+|||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346789999999999999999854
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.68 E-value=0.0008 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.00091 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+-.++++|++|+|||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.63 E-value=0.00072 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~ 162 (322)
-.++|+|++|+|||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999998763
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.52 E-value=0.0015 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++++|++|+||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567899999999999999999875
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.48 E-value=0.0014 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.3
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+..++|+|++|+|||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999988764
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.47 E-value=0.0014 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++++|++|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999998764
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.42 E-value=0.011 Score=55.25 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~ 160 (322)
....|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45667899999999999999654
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.38 E-value=0.0014 Score=53.63 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
++++|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.37 E-value=0.0017 Score=54.24 Aligned_cols=25 Identities=12% Similarity=0.322 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..++++|++|+||||+++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567899999999999999999865
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.36 E-value=0.0017 Score=54.90 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.6
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+.+-.++|+|++|+|||||++.|.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3456678999999999999999998743
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.31 E-value=0.002 Score=53.81 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=21.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++++|++|+|||||++.|.+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34556899999999999999998764
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.31 E-value=0.0016 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++|+|++|+|||||++.|.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556899999999999999999874
No 264
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0068 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+.+..+++.|+||+|||+|+.++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456678889999999999998864
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.24 E-value=0.0016 Score=53.59 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 020714 142 VGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~~ 162 (322)
|+|+|++||||+||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.22 E-value=0.0024 Score=52.80 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..++++|++|+||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999998764
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0023 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..++++|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988763
No 268
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.20 E-value=0.011 Score=52.32 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=37.9
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhccc-CCCCCcEE-EE
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRV-LC 263 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~-~~~~~p~i-vV 263 (322)
..++.|+|||+..... .+...+..+|.+++|+..+.. .......+++.+... ...+.+++ +|
T Consensus 156 ~yD~ViiD~p~~~~~~-------------~~~~~l~~aD~viiv~~~~~~---s~~~~~~~~~~l~~~~~~~~~~~~gvV 219 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-------------GFAAPLQHADQAVVVTANDFD---SIYAMNRIIAAVQAKSKNYKVRLAGCV 219 (307)
T ss_dssp SCSEEEEEECCSSCCG-------------GGGGGGGTCSEEEEEECSSHH---HHHHHHHHHHHHHTTTTTCCCEEEEEE
T ss_pred cCCEEEEeCCCccchH-------------HHHHHHHHCCEEEEEecCcHH---HHHHHHHHHHHHHHhhhcCCCceEEEE
Confidence 4678999998754211 011345678999999976321 112333334433321 12344554 99
Q ss_pred EeCCCC
Q 020714 264 MNKVDL 269 (322)
Q Consensus 264 ~NK~Dl 269 (322)
+|+++-
T Consensus 220 ~N~~~~ 225 (307)
T 3end_A 220 ANRSRA 225 (307)
T ss_dssp EESCSC
T ss_pred EecCCc
Confidence 999994
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.11 E-value=0.0032 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+-.++++|++|+|||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 455689999999999999997653
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.10 E-value=0.0029 Score=53.67 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998753
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.10 E-value=0.0034 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345578999999999999999998754
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.10 E-value=0.07 Score=45.49 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..+++.|+||+|||+++..+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999998865
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.05 E-value=0.0029 Score=52.57 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+|+|++|+||||+++.|..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999865
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.02 E-value=0.0033 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..++++|++|+||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998865
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.01 E-value=0.0037 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhCCe
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
-.++++|++|+|||||++.+.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998753
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.96 E-value=0.0044 Score=49.55 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445578999999999999999988754
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.95 E-value=0.0039 Score=54.63 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568999999999999999998753
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.95 E-value=0.003 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..|+++|++|+||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998865
No 279
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.94 E-value=0.24 Score=42.58 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
......+++.|+||+|||+++.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34566799999999999999998865
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.94 E-value=0.004 Score=54.26 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345568999999999999999998753
No 281
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.93 E-value=0.0039 Score=55.66 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+..++|+|++|+|||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456788999999999999999998763
No 282
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.12 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..+.+.|+||+|||++++.+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999998864
No 283
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.93 E-value=0.0038 Score=52.56 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+-.++++|++|+|||||++.+.|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998853
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.93 E-value=0.0041 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998753
No 285
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.92 E-value=0.0045 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~ 160 (322)
++..++|+|++|+||||+++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999998
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.91 E-value=0.0057 Score=52.29 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998854
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.90 E-value=0.0046 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999998753
No 288
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.061 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..+++.|+||+|||+|+.++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 45689999999999999999865
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.88 E-value=0.0043 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.++++|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 290
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.88 E-value=0.006 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++++|++|+|||||++.+.|-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999875
No 291
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.87 E-value=0.0045 Score=53.61 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999998753
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.0047 Score=49.26 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCchhHHHHHH
Q 020714 140 VAVGIIGAPNAGKSSIINYM 159 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l 159 (322)
..|+++|+||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999998
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.85 E-value=0.0052 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..|+++|+||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999875
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.83 E-value=0.0038 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+-.++++|++|+|||||++.+.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999876
No 295
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.83 E-value=0.0048 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44568999999999999999998854
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.83 E-value=0.0051 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..++++|++|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.82 E-value=0.0068 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+..|+++|++|+||||+++.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988653
No 298
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.81 E-value=0.0053 Score=53.40 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345578999999999999999998753
No 299
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.81 E-value=0.005 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998753
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.80 E-value=0.0051 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++++|++|+|||||++.+.|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999985
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.80 E-value=0.0033 Score=53.31 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=17.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh-CC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV-GT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~-~~ 162 (322)
..+-.++|+|++|+|||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345578999999999999999998 64
No 302
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.79 E-value=0.0055 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++++|++|+|||||++.|.|-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34557899999999999999999875
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.79 E-value=0.0055 Score=53.07 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998753
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.78 E-value=0.0046 Score=54.94 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.8
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+.+-.++|+|++|+|||||++.|.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 345666899999999999999998875
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.78 E-value=0.0058 Score=50.73 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=24.0
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
....+..|+++|.+|+||||+++.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3455678999999999999999999875
No 306
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.77 E-value=0.0054 Score=48.96 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+++|++|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.77 E-value=0.0052 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=22.1
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+..|+|+|++|+|||||++.|.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998866
No 308
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.77 E-value=0.0053 Score=52.59 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45568999999999999999998753
No 309
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.76 E-value=0.012 Score=51.88 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=22.9
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+..|+|+|++|+|||||++.|.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999998764
No 310
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.76 E-value=0.0052 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568999999999999999998753
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.2 Score=46.68 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.7
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+--|++.|+||+|||+|+.++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34455689999999999999999865
No 312
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.74 E-value=0.0055 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+-.++|+|++|+|||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3455789999999999999999876
No 313
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.74 E-value=0.0059 Score=53.32 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++|+|++|+|||||++.|.|-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998753
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.72 E-value=0.0062 Score=53.07 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++++|++|+|||||++.+.|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557899999999999999999985
No 315
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.72 E-value=0.0041 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4889999999999999998764
No 316
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.71 E-value=0.00076 Score=63.85 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=21.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+.+|+++|.||+||||+.+.|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998653
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.71 E-value=0.0065 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..|+++|++|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998863
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.71 E-value=0.0065 Score=49.54 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..|+++|+||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998854
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.70 E-value=0.0056 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999998854
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.66 E-value=0.0054 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...|+++|++|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.66 E-value=0.0069 Score=50.18 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
+.|+++|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 322
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.15 Score=47.33 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+--+++.|+||+|||+|+.++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445589999999999999999865
No 323
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.64 E-value=0.0068 Score=52.76 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345578999999999999999998753
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.61 E-value=0.011 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+.+|+++|+||+||||+...|..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998863
No 325
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.61 E-value=0.0064 Score=49.42 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...++++|++|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346889999999999999998764
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.60 E-value=0.0066 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...++.|+|+|++|+|||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999988754
No 327
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.58 E-value=0.007 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..|.++|+||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.57 E-value=0.0072 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+|.|++|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998854
No 329
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.57 E-value=0.021 Score=47.64 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=40.1
Q ss_pred CCccEEEEeCCCc-ccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEE
Q 020714 185 ADTQICIFDTPGL-MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (322)
Q Consensus 185 ~~~~~~l~DtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV 263 (322)
...++.++|||+. ... . +...+..+|.+++++..+.. ........++.+.... +.++.+|
T Consensus 66 ~~yD~viiD~p~~~~~~-------~-------~~~~l~~aD~viiv~~~~~~---~~~~~~~~~~~l~~~~--~~~~~vv 126 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE-------D-------LEALADGCDLLVIPSTPDAL---ALDALMLTIETLQKLG--NNRFRIL 126 (209)
T ss_dssp GGCSEEEEEEECCCSSS-------H-------HHHHHHTSSEEEEEECSSHH---HHHHHHHHHHHHHHTC--SSSEEEE
T ss_pred hcCCEEEEeCCCCcCcH-------H-------HHHHHHHCCEEEEEecCCch---hHHHHHHHHHHHHhcc--CCCEEEE
Confidence 3568999999986 321 1 11234567999999987321 1122333333333211 3458899
Q ss_pred EeCCCCCC
Q 020714 264 MNKVDLVT 271 (322)
Q Consensus 264 ~NK~Dl~~ 271 (322)
+|+.|...
T Consensus 127 ~N~~~~~~ 134 (209)
T 3cwq_A 127 LTIIPPYP 134 (209)
T ss_dssp ECSBCCTT
T ss_pred EEecCCcc
Confidence 99999754
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.54 E-value=0.006 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+|+|++|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999875
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.53 E-value=0.0072 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+-.++++|++|+|||||++.+.|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998864
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.52 E-value=0.0059 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...|+|+|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 333
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.51 E-value=0.0059 Score=49.45 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 556899999999999999988764
No 334
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.50 E-value=0.0057 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++|+|++|+|||||++.|.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45567999999999999999999874
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.50 E-value=0.016 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+++|+||+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.50 E-value=0.0085 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..|+++|++|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988653
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.47 E-value=0.0036 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 338
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.45 E-value=0.013 Score=50.40 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.5
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+..|+++|+||+||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998854
No 339
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.44 E-value=0.0088 Score=49.38 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....|+++|++|+||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455799999999999999998864
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.44 E-value=0.0074 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+|+|++|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998876
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.43 E-value=0.0081 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..++++|.+|+||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.42 E-value=0.0089 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
++..|+|+|+||+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 343
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.40 E-value=0.0097 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.40 E-value=0.0099 Score=48.94 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
++..|+|.|.+|+||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 345
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.37 E-value=0.009 Score=48.55 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+|.|+||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 346
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.37 E-value=0.0088 Score=49.88 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+|+|+||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.35 E-value=0.011 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.1
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+..|+|+|+||+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998854
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.32 E-value=0.0096 Score=48.90 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 349
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.32 E-value=0.011 Score=50.84 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=21.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~ 160 (322)
..+..|+|+|++|+||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.01 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+++|.||+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988753
No 351
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.31 E-value=0.064 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+++.|+||+|||+|+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998864
No 352
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.26 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+.+--|++.|+||+|||+|+.++.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHH
Confidence 3445699999999999999999965
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.29 E-value=0.0097 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+|+|+||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 354
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.28 E-value=0.012 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.526 Sum_probs=23.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345578999999999999999998854
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.28 E-value=0.01 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
++..|+|+|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.27 E-value=0.01 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999998864
No 357
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.26 E-value=0.009 Score=50.08 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=22.8
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+-.++++|++|+|||||++.+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344566789999999999999999876
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.26 E-value=0.011 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=22.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 445578999999999999999998753
No 359
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.23 E-value=0.011 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
++..|+++|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998853
No 360
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.20 E-value=0.011 Score=50.29 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.8
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHh
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~ 160 (322)
....+-.++++|++|+|||||++.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34456678999999999999999876
No 361
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.18 E-value=0.0087 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999998763
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.17 E-value=0.01 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44568999999999999999998854
No 363
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.17 E-value=0.14 Score=44.25 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..+++.|+||+|||++++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3455699999999999999999864
No 364
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.16 E-value=0.068 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..+++.|+||+|||++++.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345789999999999999999865
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.15 E-value=0.011 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~ 160 (322)
++..|+|+|++|+||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999886
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.15 E-value=0.014 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=21.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+++|.+|+||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.14 E-value=0.0083 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 368
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.14 E-value=0.011 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+..|+|.|..|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998764
No 369
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.13 E-value=0.012 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44568999999999999999998754
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.09 E-value=0.01 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..|+|+|+||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.08 E-value=0.013 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..|+++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998865
No 372
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.07 E-value=0.013 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998853
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.06 E-value=0.01 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.++|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999865
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.03 E-value=0.0091 Score=54.40 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++|+|++|+|||||++.|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999874
No 375
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.016 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....|+|+|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.00 E-value=0.015 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...++++|++|+|||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 377
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.00 E-value=0.012 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....|+++|++|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345689999999999999998863
No 378
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.99 E-value=0.011 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+-.++++|++|+|||||++.|.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999874
No 379
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.98 E-value=0.014 Score=49.45 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~ivV~ 264 (322)
...++.|+|||+..... +...+..+|.++++++.+...-..-..+..++..++. ..+.+|+
T Consensus 130 ~~yD~viiD~pp~~~~~--------------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~v~ 190 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL--------------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI-----KKVRYVI 190 (254)
T ss_dssp TCCSEEEEEECTTCTTC--------------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC-----SCEEEEE
T ss_pred CCCCEEEEeCCCcccHH--------------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC-----ccEEEEE
Confidence 45678899998644211 1123466799999998732111111123333444332 3478999
Q ss_pred eCCC
Q 020714 265 NKVD 268 (322)
Q Consensus 265 NK~D 268 (322)
|+.+
T Consensus 191 N~~~ 194 (254)
T 3kjh_A 191 NKVR 194 (254)
T ss_dssp EEEC
T ss_pred eCCC
Confidence 9998
No 380
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.34 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.0
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+--|++.|+||+|||+|+.++.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3345589999999999999999965
No 381
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.97 E-value=0.015 Score=52.93 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 44568999999999999999998753
No 382
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.97 E-value=0.015 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.97 E-value=0.013 Score=53.47 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34468999999999999999998754
No 384
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.96 E-value=0.015 Score=47.66 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++..|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998754
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.93 E-value=0.013 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+-.++|+|++|+|||||++.|.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 455689999999999999999875
No 386
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.015 Score=52.87 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344568999999999999999998753
No 387
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.071 Score=49.60 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=21.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+.+-.|++.|+||+|||+|+.++.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34456799999999999999999865
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.90 E-value=0.016 Score=53.11 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344568999999999999999998854
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.89 E-value=0.016 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+++|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999998864
No 390
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.88 E-value=0.011 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=16.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.86 E-value=0.015 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+|+|+||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.85 E-value=0.015 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+++|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 393
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.84 E-value=0.016 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.81 E-value=0.017 Score=52.77 Aligned_cols=27 Identities=15% Similarity=0.430 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345568999999999999999998753
No 395
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=51.21 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 020714 142 VGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~ 161 (322)
++++|+||+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999976
No 396
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.38 Score=44.99 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+--|++.|+||+|||+|+.++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4455689999999999999999865
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.78 E-value=0.016 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+...|+|+|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
No 398
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.73 E-value=0.53 Score=40.21 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=36.8
Q ss_pred CCccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCCCCCcEE-EE
Q 020714 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LC 263 (322)
Q Consensus 185 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~~~~p~i-vV 263 (322)
...++.|+|||+.... .... . ..+..+|.+++|+..+.. . ...+...++.+... +.+++ +|
T Consensus 127 ~~yD~ViID~pp~~~~------~~~~--~----~~~~~aD~viiv~~~~~~--s-~~~~~~~~~~l~~~---~~~~~gvV 188 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD------APLT--V----MQDAKPTGVVVVSTPQEL--T-AVIVEKAINMAEET---NTSVLGLV 188 (262)
T ss_dssp CSCSEEEEECCSSSSS------HHHH--H----HHHHCCSEEEEEECSSSC--C-HHHHHHHHHHHHTT---TCCEEEEE
T ss_pred cCCCEEEEECcCCCch------HHHH--H----HhhccCCeEEEEecCccc--h-HHHHHHHHHHHHhC---CCCEEEEE
Confidence 3467889999875421 1100 0 111247999999877432 1 22344444444432 34566 99
Q ss_pred EeCCCC
Q 020714 264 MNKVDL 269 (322)
Q Consensus 264 ~NK~Dl 269 (322)
+|+.|.
T Consensus 189 ~N~~~~ 194 (262)
T 2ph1_A 189 ENMSYF 194 (262)
T ss_dssp ETTCCE
T ss_pred ECCCcc
Confidence 999874
No 399
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.72 E-value=0.018 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|++.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.68 E-value=0.017 Score=55.12 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+..++|+|++|+|||||++.|++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 445899999999999999999863
No 401
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.67 E-value=0.018 Score=46.72 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 402
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.63 E-value=0.015 Score=49.83 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 020714 142 VGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~ 161 (322)
++++|+||+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999875
No 403
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.63 E-value=0.014 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
.+-.++++|++|+|||||++.+.|-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44568999999999999999998754
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.63 E-value=0.02 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+++|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.59 E-value=0.016 Score=46.51 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+++|+||+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998854
No 406
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.56 E-value=0.0084 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.54 E-value=0.02 Score=48.11 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+|+|+||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.51 E-value=0.022 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+++|.+|+||||+.+.|.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567789999999999999998865
No 409
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.51 E-value=0.022 Score=48.81 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..++.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998754
No 410
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.51 E-value=0.022 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
+|+++|+||+||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988864
No 411
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.50 E-value=0.021 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-.++++|++|+|||||++.+.|-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34556899999999999999999874
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.48 E-value=0.024 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 413
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.48 E-value=0.025 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 455889999999999999988653
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.46 E-value=0.025 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..|+|.|++|+||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4577899999999999999998865
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.45 E-value=0.022 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.3
Q ss_pred cCceEEEEEcCCCCchhHHHHHHh
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~ 160 (322)
..++.|+|+|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 416
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.43 E-value=0.08 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+++.|+||+|||+|+.++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999998865
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.43 E-value=0.014 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568999999999999999998754
No 418
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.42 E-value=0.018 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988753
No 419
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.38 E-value=0.022 Score=52.86 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.-.++|+|++|+|||||++.+++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999875
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.33 E-value=0.023 Score=45.35 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988753
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.31 E-value=0.025 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHh
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~ 160 (322)
.++.|+++|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.30 E-value=0.028 Score=47.28 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=21.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhhhcCCc
Q 020714 292 IFMTSGLKGAGLKALTQYLMEQFKDLGLK 320 (322)
Q Consensus 292 ~~~iSa~~g~gi~el~~~i~~~l~~~~~~ 320 (322)
++.+.+- ..++++++.|...+.+.+++
T Consensus 191 l~~Idg~--~~~eeV~~~I~~~l~k~G~k 217 (217)
T 3umf_A 191 VITIDAS--GTVDAIFDKVNHELQKFGVK 217 (217)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHHTTTCC
T ss_pred EEEEECC--CCHHHHHHHHHHHHHHcCCC
Confidence 6777764 38999999999999887654
No 423
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.24 E-value=0.02 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 020714 141 AVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+++.|+||+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998763
No 424
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.24 E-value=0.023 Score=47.45 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=21.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+-.++++|++|+|||||++.+.+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34556788999999999999998873
No 425
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.22 E-value=0.064 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 020714 142 VGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~ 161 (322)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999875
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.20 E-value=0.024 Score=45.76 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~ 160 (322)
..+|+|++|+|||||+.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999875
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.18 E-value=0.032 Score=45.96 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=22.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+.|+++|.+|+||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45788999999999999999988643
No 428
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.18 E-value=0.028 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
-.|+++|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 429
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.15 E-value=0.025 Score=48.67 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.++|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 430
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.13 E-value=0.17 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..++++|+||+|||+|++++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999876
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.10 E-value=0.027 Score=54.15 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=23.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
..+-.++++|++|+|||||++.|.|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999998854
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.038 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.9
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+-.++|+|++|+|||||++.|.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 345677999999999999999998764
No 433
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.97 E-value=0.024 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+-.|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998854
No 434
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.97 E-value=0.12 Score=46.61 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.2
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.....+++.|+||+|||+|+.++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999864
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.93 E-value=0.027 Score=50.96 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.++-+++++|++|+|||||++.+.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999875
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.89 E-value=0.03 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++++|++|+|||||++.+.|-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4457999999999999999999874
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.89 E-value=0.034 Score=53.34 Aligned_cols=27 Identities=19% Similarity=0.620 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
.+-.++++|++|+|||||++.|.|...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 455789999999999999999998543
No 438
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.84 E-value=0.033 Score=46.15 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=22.7
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+-.++++|++|+|||||+..+.+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345566789999999999999999875
No 439
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.84 E-value=0.03 Score=49.11 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+-.++|+|+||+|||||++.+.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 44555789999999999999988764
No 440
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.79 E-value=0.03 Score=54.44 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=22.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+.+-.++++|++|+|||||++.|.|-.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345579999999999999999998753
No 441
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.78 E-value=0.031 Score=44.74 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+++.|++|+|||+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999988764
No 442
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.76 E-value=0.045 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..+++.|+||+|||++++++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34589999999999999999865
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.76 E-value=0.034 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=22.7
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+.+-.++++|++|+|||||++.+.|-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998743
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.75 E-value=0.036 Score=46.97 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=22.0
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+..|+++|.+|+||||+.+.|.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999998864
No 445
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.71 E-value=0.031 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
-.++|+|++|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999999999875
No 446
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.66 E-value=0.035 Score=50.74 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.1
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+.+-.++++|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44556789999999999999998875
No 447
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.64 E-value=0.042 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....+++.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999988764
No 448
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.64 E-value=0.34 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..+++.|+||+|||+|+.++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 449
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.63 E-value=0.035 Score=54.04 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=22.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+.+-.++++|++|+|||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 345689999999999999999998743
No 450
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.63 E-value=0.12 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....++|.|+||+|||+|+.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999854
No 451
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.58 E-value=0.53 Score=39.83 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=38.6
Q ss_pred CccEEEEeCCCcccCCCCCChhhHHHHHHHHHhhcccccEEEEEEeCCCCCCCcHHHHHHHHHHhcccCC------CCCc
Q 020714 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP------PKQK 259 (322)
Q Consensus 186 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~D~s~~~~~~~~~~~~~l~~~~~~~~------~~~p 259 (322)
..++.|+|||+-.. . .+...+..+|.++++++.+.. .......++..+..... +...
T Consensus 113 ~yD~viiD~p~~~~-------~-------~~~~~l~~ad~vi~v~~~~~~---s~~~~~~~~~~l~~~~~~~~~~~~~~~ 175 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE-------T-------GALMALYFADEAIITTNPEVS---SVRDSDRILGILASKSRRAENGEEPIK 175 (260)
T ss_dssp TCSEEEEECCSSSS-------H-------HHHHHHHTCSEEEEEECSSHH---HHHHHHHHHHHHTTSSHHHHTTCSCCE
T ss_pred CCCEEEEcCCCCCC-------H-------HHHHHHHhCCEEEEEecCChh---HHHHHHHHHHHHHHhccccccccCCcc
Confidence 57889999987431 1 112334567999999987321 11233344444443211 2245
Q ss_pred EEEEEeCCCC
Q 020714 260 RVLCMNKVDL 269 (322)
Q Consensus 260 ~ivV~NK~Dl 269 (322)
+.+|+|+.|.
T Consensus 176 ~~~v~N~~~~ 185 (260)
T 3q9l_A 176 EHLLLTRYNP 185 (260)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEecCCc
Confidence 7899999984
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.56 E-value=0.042 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 453
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.55 E-value=0.036 Score=46.71 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=22.7
Q ss_pred hccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 135 ~~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+.+-.++++|++|+|||||+..+.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345566789999999999999998876
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.54 E-value=0.031 Score=48.22 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.0
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..++..|+|.|.+|+||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 346778999999999999999988653
No 455
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.52 E-value=0.038 Score=53.85 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=23.5
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
..+-.++++|++|+|||||++.|.|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3455789999999999999999988543
No 456
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.046 Score=53.25 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCCeee
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~~~~ 165 (322)
.+-.++++|++|+|||||++.|.|...+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 4557899999999999999999986433
No 457
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.50 E-value=0.064 Score=41.68 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
....|.+.|+||+|||++...+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999998854
No 458
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.45 E-value=0.044 Score=43.06 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.3
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~ 160 (322)
..+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999864
No 459
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.43 E-value=0.03 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+.+-.++++|++|+|||||++.+.|-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34557999999999999999999874
No 460
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.43 E-value=0.047 Score=44.77 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.39 E-value=0.056 Score=44.74 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..|+|+|++|+|||+|...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998764
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.30 E-value=0.051 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+-.++++|++|+|||||++.|.|..
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998854
No 463
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.29 E-value=0.04 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+-+++++|++|+|||||++.+.+.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45667999999999999999999874
No 464
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.21 E-value=0.04 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+-.++++|++|+|||||++.+.+-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.11 E-value=0.057 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+-.++|+|+.|+|||||++.|.|..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.02 E-value=0.059 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|++.|.+|+||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.97 E-value=0.05 Score=49.50 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~ 160 (322)
-.+|+|++|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999876
No 468
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.91 E-value=0.063 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.607 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCee
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTKV 164 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~~ 164 (322)
+-.++++|+.|+|||||++.|.|...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999998643
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.90 E-value=0.038 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=17.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+.+.|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988754
No 470
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.86 E-value=0.05 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.2
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
...+..++|+|++|+|||||++.|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 446778999999999999999998764
No 471
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.83 E-value=0.059 Score=44.24 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.3
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 020714 142 VGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~ 161 (322)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998864
No 472
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.78 E-value=0.064 Score=44.00 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 473
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.77 E-value=0.049 Score=45.32 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988777653
No 474
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.75 E-value=0.06 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.++|.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.68 E-value=0.069 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+.+|+|+||+||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467899999999999999988753
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.067 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCeee
Q 020714 141 AVGIIGAPNAGKSSIINYMVGTKVA 165 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~~~~~ 165 (322)
.++++|++|+|||||++.|.|...+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3799999999999999999986543
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.49 E-value=0.075 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhCC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
.+..|+++|+||+||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467889999999999999998753
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.35 E-value=0.063 Score=46.65 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.5
Q ss_pred ccCceEEEEEcCCCCchhHHHHHHhC
Q 020714 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 136 ~~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+-.++|+|++|+|||||+..+.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34556789999999999999988764
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.34 E-value=0.096 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+..|+|+|++|+|||||...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
No 480
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.26 E-value=0.073 Score=45.04 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=18.8
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.++.-|.|.|.+|+||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999998864
No 481
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.25 E-value=0.081 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.6
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.....++|.|+||+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987654
No 482
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.16 E-value=0.078 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.1
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+..+++.|+||+|||+|++++.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455689999999999999999865
No 483
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.16 E-value=0.17 Score=44.31 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+++.|+||+|||+++..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999998764
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.15 E-value=0.099 Score=43.71 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
++.-|.|.|.+|+||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 466789999999999999998853
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.09 E-value=0.2 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+++++|++|+||||+...|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999987654
No 486
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.01 E-value=0.075 Score=41.21 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...|.+.|+||+|||++...+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34589999999999999998854
No 487
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.99 E-value=0.064 Score=48.10 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=18.6
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 020714 142 VGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 142 v~v~G~~~vGKStlin~l~~ 161 (322)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998866
No 488
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.97 E-value=0.063 Score=57.14 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.4
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
+.+-+|++||++|+|||||++.|.+-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34568999999999999999999863
No 489
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.91 E-value=0.073 Score=47.26 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..+++.|+||+|||+|+..+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999998864
No 490
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.82 E-value=0.11 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchhHHHHHHhCC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..|+|+|++|+|||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999998643
No 491
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.79 E-value=0.072 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+-.++|.|++|+|||||++.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999998875
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.77 E-value=0.1 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..|+|+|++|+|||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988764
No 493
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.72 E-value=0.11 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchhHHHHHHhC
Q 020714 140 VAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 140 ~~v~v~G~~~vGKStlin~l~~ 161 (322)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988864
No 494
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.72 E-value=0.085 Score=47.71 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 020714 141 AVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~~ 161 (322)
.++|.|++|+|||||++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.70 E-value=0.19 Score=44.74 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
...+++.|+||+|||+++..+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34589999999999999998854
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.69 E-value=0.087 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHhC
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~ 161 (322)
+..|+++|++|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988754
No 497
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.66 E-value=0.099 Score=43.26 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.1
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 020714 141 AVGIIGAPNAGKSSIINYMV 160 (322)
Q Consensus 141 ~v~v~G~~~vGKStlin~l~ 160 (322)
..+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999999864
No 498
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.65 E-value=0.091 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCchhHHHHHHhC
Q 020714 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (322)
Q Consensus 138 ~~~~v~v~G~~~vGKStlin~l~~ 161 (322)
.+..+++.|+||+|||+++..+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998864
No 499
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.63 E-value=0.26 Score=49.43 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=21.9
Q ss_pred cCceEEEEEcCCCCchhHHHHHHhCC
Q 020714 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (322)
Q Consensus 137 ~~~~~v~v~G~~~vGKStlin~l~~~ 162 (322)
..+.-|++.|+||+|||+|++++.+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999999753
No 500
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.59 E-value=0.064 Score=54.88 Aligned_cols=25 Identities=40% Similarity=0.671 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHhCCe
Q 020714 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (322)
Q Consensus 139 ~~~v~v~G~~~vGKStlin~l~~~~ 163 (322)
+-.++|+|++|+|||||++.|.|..
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998853
Done!