BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020715
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F20|A Chain A, X-Ray Crystal Structure Of Protein Bt_1218 From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr8.
pdb|2F20|B Chain B, X-Ray Crystal Structure Of Protein Bt_1218 From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr8
Length = 240
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 7 FNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYD 66
NAR++++ EK SFR + K RC+ G++EW+ +G+ K PYY++ KD A +YD
Sbjct: 81 LNARADTIFEKPSFREPIXKKRCIVPSTGYFEWRHEGANKIPYYIYVKDEPIFSXAGIYD 140
Query: 67 TWQSSE-GEILYTFTILTTSSSAALQWLHD---RMPVILGDKESSDAWLNGS-SSSKYDT 121
W + GE TF+I+TT +++ ++ + R P IL +E + WLN S S ++ +
Sbjct: 141 RWLDKDTGEEHETFSIITTDTNSLTDYIDNTKHRXPAILT-QEEEEKWLNPSLSKAEIAS 199
Query: 122 ILKPYE 127
+LKP++
Sbjct: 200 LLKPFD 205
>pdb|2ICU|A Chain A, Crystal Structure Of Hypothetical Protein Yedk From
Escherichia Coli
pdb|2ICU|B Chain B, Crystal Structure Of Hypothetical Protein Yedk From
Escherichia Coli
Length = 229
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 7 FNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYD 66
NAR E+ F+ L R + +G++EWKK+G KKQP++++ DG+P+ AA+
Sbjct: 81 INARVETAATSRXFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFXAAIGS 140
Query: 67 TWQSSEGEILYTFTILTTSSSAALQWLHDRMPVILGDKESSDAWLNGSSSSKYDTILKP- 125
T G+ F I+T ++ L +HDR P++L E++ W S K + +
Sbjct: 141 T-PFERGDEAEGFLIVTAAADQGLVDIHDRRPLVL-SPEAAREWXRQEISGKEASEIAAS 198
Query: 126 --YEESDLVWYPVTPAMGKLSFDGPECIKEI 154
+ W+PV+ A+G + G E I+ +
Sbjct: 199 GCVPANQFSWHPVSRAVGNVKNQGAELIQPV 229
>pdb|2BDV|A Chain A, X-ray Crystal Structure Of Phage-related Protein Bb2244
From Bordetella Bronchiseptica. Northeast Structural
Genomics Consortium Target Bor24
Length = 231
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 3 SALQFNARSESVTEKA-SFRRLLPKSRCLAAVEGFYEWKK--DGSK--KQPYYVHFKDGR 57
S NA+ E++ ++ + R L +G+YEWK G K KQPYY+H
Sbjct: 68 SFFXINAKLETIERHGWPWKLXIGTGRILVPADGWYEWKALDSGPKPAKQPYYIH--GDA 125
Query: 58 PLVFAALYDTWQSSEGEILYTFTILTTSSSAALQWLHDRMPVILGDKESSDAWLNGSSS- 116
PL+FA L + +E + + F I+T + + +HDR PV L E + W++ ++
Sbjct: 126 PLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHDRRPVAL-PPELAREWVDPATPV 184
Query: 117 SKYDTILKP-YEESDLVWYPVTPAMGKLSFDGPECIKEI 154
++ IL+ E+ WYPV +G + P+ + +
Sbjct: 185 ARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL 223
>pdb|1ZN6|A Chain A, X-Ray Crystal Structure Of Protein Q7wlm8 From Bordetella
Bronchiseptica. Northeast Structural Genomics Consortium
Target Bor19
Length = 227
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 8 NARSESVTEKASFRRLLPKSR-CLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYD 66
NARSE+ + +FR K++ C+ + YE K P DG PL A L+D
Sbjct: 84 NARSETAHQLWTFRNAWAKAQHCIIPADAIYEPDWRSGKAVPTRFTRADGAPLGIAGLWD 143
Query: 67 TWQSSEGEILYTFTILTTSS--SAALQWLHD-----RMPVILGDKESSDAWLNGSSSSKY 119
++++ GE + ++T LT ++ + H R VIL D D WL ++
Sbjct: 144 RYRNAAGEWIDSYTXLTINADDDPLFRDYHQAGKEKRXVVILPDGAYGD-WLTAPATDTR 202
Query: 120 DTILKPYEESDLV 132
D +L PY LV
Sbjct: 203 DFLL-PYPADRLV 214
>pdb|3BHQ|A Chain A, Crystal Structure Of A Putative Tetr-Family
Transcriptional Regulator (Mlr_4833) From Mesorhizobium
Loti Maff303099 At 1.54 A Resolution
pdb|3BHQ|B Chain B, Crystal Structure Of A Putative Tetr-Family
Transcriptional Regulator (Mlr_4833) From Mesorhizobium
Loti Maff303099 At 1.54 A Resolution
Length = 211
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 41 KDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSS---SAALQWLHDRM 97
K G+ KQ Y HF D L F + + S +I+ + T L + + LQ L R+
Sbjct: 41 KAGASKQTVYKHFTDKETL-FGEVVLSTASQVNDIIESVTTLLSEAIFXEGGLQQLARRL 99
Query: 98 PVILGDKE 105
+L D+E
Sbjct: 100 IAVLXDEE 107
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 252 GDPDTKSVASVLSDEDTKKELQKRDY---KEFLADSKPVIDGNNKL 294
GD TK V ++ D + ++K D KE + + PV+D NNKL
Sbjct: 76 GDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKL 121
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 224 TAQTNLPKSVKDEAVTADDIRTQSSVEKGDPDTKSVASVLS 264
TA NL K +K+E V D I QS ++ G P + ++
Sbjct: 212 TALYNLVKQLKEEGVPIDGIGHQSHIQIGAPSEAEIEKTIN 252
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 102 GDKESSDAWLNGSSSSKYDTILKPYEESDLVW 133
GD ++ DAWL YD I+ YE+ D +W
Sbjct: 110 GDYDTDDAWL-----KNYDIIITTYEKLDSLW 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,485,738
Number of Sequences: 62578
Number of extensions: 384854
Number of successful extensions: 916
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 13
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)