Query 020715
Match_columns 322
No_of_seqs 178 out of 1239
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2135 Uncharacterized conser 100.0 2.4E-48 5.1E-53 358.0 12.9 153 2-155 71-224 (226)
2 KOG2618 Uncharacterized conser 100.0 5.5E-48 1.2E-52 367.0 12.2 168 3-171 97-264 (366)
3 PRK09951 hypothetical protein; 100.0 1.3E-47 2.8E-52 352.5 13.4 149 4-154 71-222 (222)
4 PF02586 DUF159: Uncharacteris 100.0 1.1E-44 2.3E-49 327.5 9.5 140 3-148 67-208 (208)
5 PF09507 CDC27: DNA polymerase 65.9 1.6 3.4E-05 42.9 -0.7 17 306-322 414-430 (430)
6 PF15342 FAM212: FAM212 family 34.7 25 0.00053 27.2 1.5 26 88-113 30-58 (62)
7 KOG1458 Fructose-1,6-bisphosph 17.8 57 0.0012 32.7 0.9 22 90-111 318-339 (343)
8 PRK10877 protein disulfide iso 17.3 1.4E+02 0.0031 27.7 3.4 34 32-69 44-77 (232)
9 PRK09293 fructose-1,6-bisphosp 15.6 76 0.0016 31.6 1.2 21 91-111 300-320 (327)
10 PLN02462 sedoheptulose-1,7-bis 15.0 82 0.0018 31.2 1.2 20 91-110 279-298 (304)
No 1
>COG2135 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-48 Score=358.05 Aligned_cols=153 Identities=42% Similarity=0.766 Sum_probs=143.0
Q ss_pred CCCceeeeecCCccCChhhhhhcCCCeeEEeecceeeeecCCCC-cccEEEEecCCCcEEEEEeeccccCCCCceeEEEE
Q 020715 2 CSALQFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSK-KQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFT 80 (322)
Q Consensus 2 ~g~~t~NARsETL~ekp~Fr~a~~~rRCLVPa~GFYEW~~~g~k-KqPy~I~~kdg~~f~~AGLwd~w~~~~Ge~l~Sft 80 (322)
-|+++||||+||+.++++|+.+++++||||||+|||||+..+++ |+||||+++||.+|+|||||+.|...+|..+++||
T Consensus 71 ~~~~~~NaR~et~ae~~~Fr~a~~~~RCLVPadgFyEW~~~~~~~k~p~fi~~~dg~lf~fAGlw~~~~~~~~~~~~s~t 150 (226)
T COG2135 71 KGPPLINARAETAAEKRSFRAAFQSRRCLVPADGFYEWRKEPKKKKQPYFIRRKDGALFFFAGLWETWFEAGGDELESFT 150 (226)
T ss_pred cCCCceEeccccccccccchhhhhcCceEEEcCcceecccCCCcCCCceEEEcCCCCeEEEEEeccccccCCCCccceEE
Confidence 36889999999999999999999999999999999999987555 99999999999999999999999877788999999
Q ss_pred EEecCCchhhhhcccCceeecCChhhHhhhcCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCCCccccccccc
Q 020715 81 ILTTSSSAALQWLHDRMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIP 155 (322)
Q Consensus 81 IITt~An~~ls~IHdRMPVIL~~~E~~d~WLdp~~~~~~~~LL~p~~~~~L~~yPVs~~Vnn~~n~~pe~I~Pi~ 155 (322)
||||+||..|++|||||||||. +++++.||++....++.+||+|++.+.|.+|||+..||+++|++++||+|..
T Consensus 151 ilTt~an~~la~iHdRmpvVL~-~e~~~~WLd~~~~~e~~~Llrp~p~~~l~~~~vs~~Vn~~~n~~~el~~p~~ 224 (226)
T COG2135 151 ILTTEANDLLAPIHDRMPVVLA-PEDWDAWLDPKTPPELKELLRPLPADDLSAYPVSTLVNNVKNDGPELIEPAS 224 (226)
T ss_pred EEEccCchhhhhhhhcCceecC-hhHHHHhhCCCCchHHHHhccCCCccceEEEEcccccCCcccCCcccccccc
Confidence 9999999999999999999997 7899999999722368899999999999999999999999999999999975
No 2
>KOG2618 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-48 Score=367.01 Aligned_cols=168 Identities=46% Similarity=0.798 Sum_probs=154.4
Q ss_pred CCceeeeecCCccCChhhhhhcCCCeeEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccccCCCCceeEEEEEE
Q 020715 3 SALQFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTIL 82 (322)
Q Consensus 3 g~~t~NARsETL~ekp~Fr~a~~~rRCLVPa~GFYEW~~~g~kKqPy~I~~kdg~~f~~AGLwd~w~~~~Ge~l~SftII 82 (322)
+.+|||||+|+|+++.+|+..+.+.||||.|+|||||+..+++||||||+..||++|+|||||+.|.+..|+.+||||||
T Consensus 97 ~f~tfNaRlE~lmEsksfrrpl~KgRCvVl~dGfyEWkt~gskkqpYfI~f~dgRlL~mAglfD~wE~egGD~LYtfTII 176 (366)
T KOG2618|consen 97 TFRTFNARLENLMESKSFRRPLEKGRCVVLMDGFYEWKTVGSKKQPYFISFRDGRLLFMAGLFDYWEKEGGDDLYTFTII 176 (366)
T ss_pred ceeecccchHHHHhhhhhhccCCCCcEEEEecceeeeeeccccCCceEEEEecCceeEeeeehheecccCCceeEEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhhhhcccCceeecCChhhHhhhcCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCCCccccccccccccCCCC
Q 020715 83 TTSSSAALQWLHDRMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIPLKTEGKN 162 (322)
Q Consensus 83 Tt~An~~ls~IHdRMPVIL~~~E~~d~WLdp~~~~~~~~LL~p~~~~~L~~yPVs~~Vnn~~n~~pe~I~Pi~~k~~~k~ 162 (322)
|+++...|+|||+|||+||.+.+.|+.|||-........|+-+|+.+.|+||+|+..|||++|+||+||+||.+... ..
T Consensus 177 T~qssk~LswlH~RMPaILegees~d~WLDf~~tt~~eaLk~~yp~s~Lq~y~VTs~Vgkstn~geecikpi~l~~s-~~ 255 (366)
T KOG2618|consen 177 TAQSSKELSWLHERMPAILEGEESWDAWLDFDKTTWVEALKPDYPESKLQFYQVTSDVGKSTNTGEECIKPILLEDS-ND 255 (366)
T ss_pred EecCchHhHHHHhhCceeecChhhHHhhhcCcccchhhhhcCCCcchheeEEEehhhhCCCCCCchhhhcccccccc-cc
Confidence 99999999999999999999889999999987665567777789999999999999999999999999999986533 34
Q ss_pred ccccccccc
Q 020715 163 PISNFFLKK 171 (322)
Q Consensus 163 ~i~~fF~~k 171 (322)
.++.+|...
T Consensus 256 ~~s~~~~t~ 264 (366)
T KOG2618|consen 256 MFSVKRETE 264 (366)
T ss_pred ccccccccc
Confidence 566666554
No 3
>PRK09951 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=352.47 Aligned_cols=149 Identities=30% Similarity=0.567 Sum_probs=133.2
Q ss_pred CceeeeecCCccCChhhhhhcCCCeeEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccccCCCCceeEEEEEEe
Q 020715 4 ALQFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILT 83 (322)
Q Consensus 4 ~~t~NARsETL~ekp~Fr~a~~~rRCLVPa~GFYEW~~~g~kKqPy~I~~kdg~~f~~AGLwd~w~~~~Ge~l~SftIIT 83 (322)
..+||||+|||.++++|+.+++++||||||+|||||++.+++|+||||+++|+.+|+|||||+.|.. .|+.+.||||||
T Consensus 71 ~~~~NAR~Et~~~k~~Fr~~~~~~RClIPa~GfyEW~~~~~~k~p~~i~~~d~~~l~~AGl~~~~~~-~~~~~~tftIlT 149 (222)
T PRK09951 71 PPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPYFIYRADGQPIFMAAIGSTPFE-RGDEAEGFLIVT 149 (222)
T ss_pred CCceeeeccccccCHhHHHHHHcCcEEEEccceEEcccCCCCccceEEEeCCCCcEEEEEecccccC-CCCeeeEEEEEe
Confidence 4789999999999999999999999999999999999877789999999999999999999986533 366788999999
Q ss_pred cCCchhhhhcccCceeecCChhhHhhhcCCCCch-HHH--HhcCCCCCCCceEeEcCCCCCCCCCCcccccccc
Q 020715 84 TSSSAALQWLHDRMPVILGDKESSDAWLNGSSSS-KYD--TILKPYEESDLVWYPVTPAMGKLSFDGPECIKEI 154 (322)
Q Consensus 84 t~An~~ls~IHdRMPVIL~~~E~~d~WLdp~~~~-~~~--~LL~p~~~~~L~~yPVs~~Vnn~~n~~pe~I~Pi 154 (322)
++||+.|++|||||||||. +++++.||+++... ++. .++.+++.+.|++|||++.|||++|++|+||+|+
T Consensus 150 ~~a~~~~~~iH~RmPviL~-~~~~~~WL~~~~~~~~~~~~~~~~~~~~~~l~~~pVs~~Vn~~~~~~p~~i~p~ 222 (222)
T PRK09951 150 AAADQGLVDIHDRRPLVLS-PEAAREWMRQEISGKEASEIATSGCVPANQFTWHPVSRAVGNVKNQGAELIQPV 222 (222)
T ss_pred CCCCcccccccCCCceEeC-HhHHHHhcCCCCCchhhhHHhhccCCCccceEEEECCCccCCcCCCChHHhcCC
Confidence 9999999999999999997 78999999997542 233 2456677789999999999999999999999985
No 4
>PF02586 DUF159: Uncharacterised ACR, COG2135; InterPro: IPR003738 This entry describes proteins of unknown function.; PDB: 2F20_A 1ZN6_A 2BDV_A 2ICU_B 2AEG_B.
Probab=100.00 E-value=1.1e-44 Score=327.47 Aligned_cols=140 Identities=42% Similarity=0.802 Sum_probs=116.9
Q ss_pred CCceeeeecCCccCChhhhhhcCCCeeEEeecceeeee--cCCCCcccEEEEecCCCcEEEEEeeccccCCCCceeEEEE
Q 020715 3 SALQFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWK--KDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFT 80 (322)
Q Consensus 3 g~~t~NARsETL~ekp~Fr~a~~~rRCLVPa~GFYEW~--~~g~kKqPy~I~~kdg~~f~~AGLwd~w~~~~Ge~l~Sft 80 (322)
+..+||||+|+|.++|+|+++++++||||||+|||||+ ..+++|+||||+++|+++|+|||||+.|.+.+|+.+.+||
T Consensus 67 ~~~~~NAR~Etl~~k~~fr~~~~~~RClVp~~gfyEW~~~~~~~~k~py~i~~~d~~~~~~AGl~~~~~~~~~~~~~~f~ 146 (208)
T PF02586_consen 67 KPPTINARSETLAEKPMFRDAFKRRRCLVPADGFYEWQPKKEKGKKQPYYIHRKDGEPFALAGLWDRWRDPDGEELYSFA 146 (208)
T ss_dssp CCCBSEEEHCCCTTSTTTHHHHCCGEEEEEESEEEEEEECCCTSSEEEEEEEETTSCCEEEEEEEEEEECTTSTCEEEEE
T ss_pred CcccceeecchHhhhhhHhheecCcEEEEEeeeEEEeeeccccCCceeEEEEcCCCCeEEEEEEeeccccccccccceEE
Confidence 36899999999999999999999999999999999999 6778999999999999999999999999998887789999
Q ss_pred EEecCCchhhhhcccCceeecCChhhHhhhcCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCCCcc
Q 020715 81 ILTTSSSAALQWLHDRMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSFDGP 148 (322)
Q Consensus 81 IITt~An~~ls~IHdRMPVIL~~~E~~d~WLdp~~~~~~~~LL~p~~~~~L~~yPVs~~Vnn~~n~~p 148 (322)
|||++||+.|++|||||||||. +++++.||+++.......++..++.. ||++.|||++||||
T Consensus 147 ilT~~a~~~~~~iH~RmPviL~-~e~~~~WL~~~~~~~~~~~~~~~~~~-----~Vs~~Vn~~~n~~p 208 (208)
T PF02586_consen 147 ILTTPANPEMAPIHDRMPVILP-PEDWDRWLDPDIPEEDALLLLLLPAE-----PVSTRVNNPRNNGP 208 (208)
T ss_dssp EEEEEGCTCGCCTTSEEE-EES-HHHHHHHHHTTCHHHHHHHHHC---H-----E--CGCGSCT----
T ss_pred EEecCCChhhhhccCCeeEEEC-HHHHHHhcCCCCChHHHHHhcccCCC-----CcccccCCcccCCC
Confidence 9999999999999999999997 89999999998763222222222211 99999999999987
No 5
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=65.90 E-value=1.6 Score=42.94 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=7.9
Q ss_pred cccCCCCCceeecccCC
Q 020715 306 KDAGEKQPTLFSYYSKK 322 (322)
Q Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (322)
....-||.+|.|||+||
T Consensus 414 ~~~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 414 AAKKKKQGSIMSFFKKK 430 (430)
T ss_dssp -----EE--GGGTSB--
T ss_pred CCCCCCCcchhhhccCC
Confidence 56778999999999997
No 6
>PF15342 FAM212: FAM212 family
Probab=34.66 E-value=25 Score=27.20 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=19.9
Q ss_pred hhhhhcccCceeecCC---hhhHhhhcCC
Q 020715 88 AALQWLHDRMPVILGD---KESSDAWLNG 113 (322)
Q Consensus 88 ~~ls~IHdRMPVIL~~---~E~~d~WLdp 113 (322)
..|+.-.+|+|+||.+ .+.+..|||-
T Consensus 30 sLmSr~RnRQPLVLGDN~FADLV~NWlDL 58 (62)
T PF15342_consen 30 SLMSRGRNRQPLVLGDNVFADLVGNWLDL 58 (62)
T ss_pred HHHhccccCCCeeecccHHHHHHHhhhcC
Confidence 3678888999999975 3556778873
No 7
>KOG1458 consensus Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=17.76 E-value=57 Score=32.70 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=17.5
Q ss_pred hhhcccCceeecCChhhHhhhc
Q 020715 90 LQWLHDRMPVILGDKESSDAWL 111 (322)
Q Consensus 90 ls~IHdRMPVIL~~~E~~d~WL 111 (322)
...||+|.|++|...+++++.+
T Consensus 318 P~~iHqR~pi~lGS~~dV~e~~ 339 (343)
T KOG1458|consen 318 PTKIHQRSPIFLGSKEDVEEFE 339 (343)
T ss_pred chhhccccceeecCHHHHHHHH
Confidence 3568999999998777777655
No 8
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=17.26 E-value=1.4e+02 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=24.7
Q ss_pred eecceeeeecCCCCcccEEEEecCCCcEEEEEeecccc
Q 020715 32 AVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQ 69 (322)
Q Consensus 32 Pa~GFYEW~~~g~kKqPy~I~~kdg~~f~~AGLwd~w~ 69 (322)
|+.|+||+...+ .-+|+. .||+.+...=||+.+.
T Consensus 44 p~~Gl~ev~~~~---~i~Y~~-~dg~y~i~G~l~d~~~ 77 (232)
T PRK10877 44 PVAGMKTVLTES---GVLYIT-DDGKHIIQGPMYDVSG 77 (232)
T ss_pred CCCCeEEEEECC---eEEEEc-CCCCEEEeeeeEecCC
Confidence 789999997632 356665 5677777788898653
No 9
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=15.56 E-value=76 Score=31.55 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=16.6
Q ss_pred hhcccCceeecCChhhHhhhc
Q 020715 91 QWLHDRMPVILGDKESSDAWL 111 (322)
Q Consensus 91 s~IHdRMPVIL~~~E~~d~WL 111 (322)
..||+|.||+|...++++++.
T Consensus 300 ~~lHqr~p~~~GS~~eV~~~~ 320 (327)
T PRK09293 300 ESLHQRVPLFLGSKEEVERVE 320 (327)
T ss_pred CccccCCCeEEeCHHHHHHHH
Confidence 568999999998777776554
No 10
>PLN02462 sedoheptulose-1,7-bisphosphatase
Probab=14.99 E-value=82 Score=31.17 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.0
Q ss_pred hhcccCceeecCChhhHhhh
Q 020715 91 QWLHDRMPVILGDKESSDAW 110 (322)
Q Consensus 91 s~IHdRMPVIL~~~E~~d~W 110 (322)
..||+|.|+++...++++.+
T Consensus 279 ~~lHqR~p~~~GS~~eV~~~ 298 (304)
T PLN02462 279 NNLDQRTQVAYGSKNEVIRF 298 (304)
T ss_pred CccccCCCeEEcCHHHHHHH
Confidence 45899999999877777654
Done!