Query 020715
Match_columns 322
No_of_seqs 178 out of 1239
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 07:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f20a1 d.303.1.1 (A:2-232) Hy 100.0 2.8E-47 2.1E-51 347.4 11.3 149 4-153 77-230 (231)
2 d2bdva1 d.303.1.1 (A:2-218) Ph 100.0 4.5E-44 3.3E-48 322.7 10.1 144 3-149 67-217 (217)
3 d1zn6a1 d.303.1.1 (A:2-219) Ph 100.0 5.8E-43 4.2E-47 316.8 11.8 132 4-137 79-218 (218)
4 d2aega1 d.303.1.1 (A:2-244) Hy 100.0 1.8E-37 1.3E-41 282.8 9.7 136 7-143 91-242 (243)
5 d1d9qa_ e.7.1.1 (A:) Fructose- 14.9 23 0.0017 31.6 1.0 20 91-110 316-335 (340)
6 d1eeja2 d.17.3.1 (A:1-60) Disu 14.3 38 0.0028 22.7 1.9 32 32-67 23-54 (60)
7 d1n9la_ d.110.3.6 (A:) Putativ 12.9 1.7E+02 0.012 19.7 5.3 29 49-77 71-99 (109)
8 d2gysa1 b.1.2.1 (A:1-103) Comm 12.3 45 0.0033 25.2 1.9 26 26-57 69-94 (103)
9 d2hevf1 b.22.1.1 (F:58-183) Tu 10.8 28 0.002 27.2 0.2 17 24-40 31-47 (126)
10 d1nuwa_ e.7.1.1 (A:) Fructose- 10.5 37 0.0027 30.1 1.0 18 91-108 301-318 (328)
No 1
>d2f20a1 d.303.1.1 (A:2-232) Hypothetical protein BT1218 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=100.00 E-value=2.8e-47 Score=347.40 Aligned_cols=149 Identities=34% Similarity=0.678 Sum_probs=138.6
Q ss_pred CceeeeecCCccCChhhhhhcCCCeeEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccccCCC-CceeEEEEEE
Q 020715 4 ALQFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSE-GEILYTFTIL 82 (322)
Q Consensus 4 ~~t~NARsETL~ekp~Fr~a~~~rRCLVPa~GFYEW~~~g~kKqPy~I~~kdg~~f~~AGLwd~w~~~~-Ge~l~SftII 82 (322)
..+||||+|||.++|+||.+++++||||||+|||||+..+++|+||||+++|+++|+|||||+.|.+.+ |+.+.+|+||
T Consensus 77 ~~~iNAR~Etl~~kp~fr~a~~~~RClIPa~GfyEW~~~~~~k~py~~~~~d~~~~~~AGl~~~~~~~~~g~~~~t~~ii 156 (231)
T d2f20a1 77 KMTLNARADTIFEKPSFREPIMKKRCIVPSTGYFEWRHEGANKIPYYIYVKDEPIFSMAGIYDRWLDKDTGEEHETFSII 156 (231)
T ss_dssp GGCSEEEGGGTTTCTTTTTHHHHCEEEEEESEEEEEEEETTEEEEEEEEETTCSSEEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred CcceEeecCccccCHhHHhhhhcCcEEEEeeeEEeecccCCccceeEEeccCCCceEEEEEeecccccccccccceeEEE
Confidence 468999999999999999999999999999999999998899999999999999999999999998864 7888999999
Q ss_pred ecCCchh---hhhcccCceeecCChhhHhhhcCCCCc-hHHHHhcCCCCCCCceEeEcCCCCCCCCCCccccccc
Q 020715 83 TTSSSAA---LQWLHDRMPVILGDKESSDAWLNGSSS-SKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKE 153 (322)
Q Consensus 83 Tt~An~~---ls~IHdRMPVIL~~~E~~d~WLdp~~~-~~~~~LL~p~~~~~L~~yPVs~~Vnn~~n~~pe~I~P 153 (322)
|+.+++. |++|||||||||. +++++.||+++.+ .++..||+|++.+.|.+|||++.||+++||+|+||++
T Consensus 157 T~~a~~~~~~i~~iH~RmPviL~-~~~~~~WL~~~~~~~~~~~ll~~~~~~~l~~~~Vs~~Vn~~~nn~p~lI~~ 230 (231)
T d2f20a1 157 TTDTNSLTDYIDNTKHRMPAILT-QEEEEKWLNPSLSKAEIASLLKPFDTEKMDAYVIRNDFLKKSPNDPTIVQR 230 (231)
T ss_dssp EEECCHHHHHHSTTTCEEECEEC-GGGHHHHTCTTCCHHHHHHTCCCCCGGGEEEEEBCGGGGGSCTTCGGGGCB
T ss_pred ecccchhhhhhccccCCCceecC-HHHHHHHcCCCCCHHHHHHHhccCCccceEEEECchhhCCCCCCCHHHhcc
Confidence 9999975 5666999999997 7899999999865 4688999999999999999999999999999999987
No 2
>d2bdva1 d.303.1.1 (A:2-218) Phage-related hypothetical protein BB2244 {Bordetella bronchiseptica [TaxId: 518]}
Probab=100.00 E-value=4.5e-44 Score=322.75 Aligned_cols=144 Identities=28% Similarity=0.573 Sum_probs=127.5
Q ss_pred CCceeeeecCCccCCh-hhhhhcCCCeeEEeecceeeeecCC----CCcccEEEEecCCCcEEEEEeeccccCCCCceeE
Q 020715 3 SALQFNARSESVTEKA-SFRRLLPKSRCLAAVEGFYEWKKDG----SKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILY 77 (322)
Q Consensus 3 g~~t~NARsETL~ekp-~Fr~a~~~rRCLVPa~GFYEW~~~g----~kKqPy~I~~kdg~~f~~AGLwd~w~~~~Ge~l~ 77 (322)
..++||||+|||.+++ +|+.+++++||||||+|||||+..+ +.|+||||+ ++.+++|||||..|.+.+|+.++
T Consensus 67 ~~~~~NAR~Etl~~k~~~f~~~~~~~RClVP~~gfyEW~~~~~~~~~~k~p~~~~--~~~~~~~ag~~~~~~~~~~~~~~ 144 (217)
T d2bdva1 67 SFFMINAKLETIERHGWPWKLMIGTGRILVPADGWYEWKALDSGPKPAKQPYYIH--GDAPLLFAGLSAWRRGAELDEAH 144 (217)
T ss_dssp CCCBCEEEHHHHHTTCTTGGGTTTTCEEEEEEEEEEEEEECSCSSSCCEEEEEEE--EEEEEEEEEEECCCTTCCSSGGG
T ss_pred cccccceechhhccCccccccccccceEEEEeeeEEEecccccCCccceeeeeee--ccchhheeeeeeccccccccccc
Confidence 3578999999999998 5999999999999999999998643 357888886 45689999999988888888899
Q ss_pred EEEEEecCCchhhhhcccCceeecCChhhHhhhcCCCCc-hHHHH-hcCCCCCCCceEeEcCCCCCCCCCCccc
Q 020715 78 TFTILTTSSSAALQWLHDRMPVILGDKESSDAWLNGSSS-SKYDT-ILKPYEESDLVWYPVTPAMGKLSFDGPE 149 (322)
Q Consensus 78 SftIITt~An~~ls~IHdRMPVIL~~~E~~d~WLdp~~~-~~~~~-LL~p~~~~~L~~yPVs~~Vnn~~n~~pe 149 (322)
||||||++|++.|++||+||||||. +++++.|||++.. .++.. |+.|++...|.+|||++.||+++||+||
T Consensus 145 sfailT~~a~~~~~~iH~RmPviL~-~~~~~~WL~~~~~~~~~~~~l~~~~~~~~l~~~pVs~~Vn~~~n~~pe 217 (217)
T d2bdva1 145 GFAIVTNDALGGMVDVHDRRPVALP-PELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPD 217 (217)
T ss_dssp CEEEEECGGGCCSSCTTSCCBCBCC-HHHHHHHHCTTSCHHHHHHHHTCCCCGGGCEEEECCSCSCSBTTBCCC
T ss_pred eeEEEeccccchhhhhhcccCEEEC-HHHHHHHcCCCCCHHHHHHHhcCCCCcccEEEEECCchhCCCCCCCCC
Confidence 9999999999999999999999997 7899999999865 34444 5577888899999999999999999986
No 3
>d1zn6a1 d.303.1.1 (A:2-219) Phage-related hypothetical protein BB1717 {Bordetella bronchiseptica [TaxId: 518]}
Probab=100.00 E-value=5.8e-43 Score=316.81 Aligned_cols=132 Identities=29% Similarity=0.448 Sum_probs=121.1
Q ss_pred CceeeeecCCccCChhhhhhc-CCCeeEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccccCCCCceeEEEEEE
Q 020715 4 ALQFNARSESVTEKASFRRLL-PKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTIL 82 (322)
Q Consensus 4 ~~t~NARsETL~ekp~Fr~a~-~~rRCLVPa~GFYEW~~~g~kKqPy~I~~kdg~~f~~AGLwd~w~~~~Ge~l~SftII 82 (322)
+.+||||+|||.+||+|++++ ++|||||||+|||||+..+++|+||||+++|+++|+|||||+.|.+++|+.+.|||||
T Consensus 79 ~~~iNAR~Et~~~k~~fr~a~~~~~RClVPa~gfyEw~~~~~~k~p~~i~~~d~~~~~~AGl~~~~~~~~g~~~~s~~il 158 (218)
T d1zn6a1 79 KNTSNARSETAHQLWTFRNAWAKAQHCIIPADAIYEPDWRSGKAVPTRFTRADGAPLGIAGLWDRYRNAAGEWIDSYTML 158 (218)
T ss_dssp SCCSEEETTTTTTSTTTHHHHHTTCEEEEEEEEEEEEECTTSSCEEEEEEETTSCCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred cceeecccCccccCchhhhhhhccceEEEEecEEEEcccCCCcceeeeeeecCCcceEEEEEEEeeeCCCCCeeeeEEEE
Confidence 468999999999999999986 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCch--hhhhcc-----cCceeecCChhhHhhhcCCCCchHHHHhcCCCCCCCceEeEcC
Q 020715 83 TTSSSA--ALQWLH-----DRMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVT 137 (322)
Q Consensus 83 Tt~An~--~ls~IH-----dRMPVIL~~~E~~d~WLdp~~~~~~~~LL~p~~~~~L~~yPVs 137 (322)
|++|+. .|+.|| +||||||. +++++.||++... ++..||+|++++.|++|||.
T Consensus 159 t~~a~~~~~~~~iH~~~~h~RmPviL~-~~~~~~WL~~~~~-~~~~ll~p~p~~~l~a~pV~ 218 (218)
T d1zn6a1 159 TINADDDPLFRDYHQAGKEKRMVVILP-DGAYGDWLTAPAT-DTRDFLLPYPADRLVAAAVK 218 (218)
T ss_dssp EEECTTCTTGGGCSCTTSCCEEECBCC-GGGHHHHHHCCGG-GHHHHCCCCCGGGEEEEECC
T ss_pred eecccccchhhhhccccccCCCcEEeC-HHHHHHhCCCCcc-cHHHHcccCCccceEEEEcC
Confidence 997765 566666 79999997 7899999998765 57889999999999999993
No 4
>d2aega1 d.303.1.1 (A:2-244) Hypothetical protein Atu5096 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00 E-value=1.8e-37 Score=282.76 Aligned_cols=136 Identities=18% Similarity=0.340 Sum_probs=112.0
Q ss_pred eeeecCCccC---Chhhhhhc-CCCeeEEeecceeeeecCC-----CCcccEEEEecCCCcEEEEEeec-cccCC-----
Q 020715 7 FNARSESVTE---KASFRRLL-PKSRCLAAVEGFYEWKKDG-----SKKQPYYVHFKDGRPLVFAALYD-TWQSS----- 71 (322)
Q Consensus 7 ~NARsETL~e---kp~Fr~a~-~~rRCLVPa~GFYEW~~~g-----~kKqPy~I~~kdg~~f~~AGLwd-~w~~~----- 71 (322)
+|+|.|+..+ ++.|+.++ .+|||||||+|||||...+ ..++||||+..|+.+|+|||||+ .|.+.
T Consensus 91 ~~~r~~~~a~~~~~~~~~~~~~~~rRClIPa~gfyEW~~~~~~~~~~~k~p~~i~~~d~~~~~~AGlw~~~w~~~~~~~~ 170 (243)
T d2aega1 91 EPDRGVTNVRKLNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLMFFAGIHVPQWKSVRKVRD 170 (243)
T ss_dssp CCCCCBCEECCTTCGGGGGGCSGGGEEEEEESEEEEECTTSCCTTSCCCEEEEESSTTCCCEEEEEEEEEEEEECSSGGG
T ss_pred cchhhhhhhcccccHhHhhhhccCCcEEEEeceEEEecccccccCCCCCCCEEEECCCCceeEEeeeeeecccCcccccc
Confidence 4445444433 35566655 4799999999999997532 35789999999999999999996 45432
Q ss_pred CCceeEEEEEEecCCchhhhhcccC-ceeecCChhhHhhhcCCCCchHHHHhcCCCCCCCceEeEcCCCCCCC
Q 020715 72 EGEILYTFTILTTSSSAALQWLHDR-MPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKL 143 (322)
Q Consensus 72 ~Ge~l~SftIITt~An~~ls~IHdR-MPVIL~~~E~~d~WLdp~~~~~~~~LL~p~~~~~L~~yPVs~~Vnn~ 143 (322)
.|+.++||||||++||+.|++|||| |||||.++++++.||+++.. ++..||+|++.+.|.+|+|++.||++
T Consensus 171 ~~~~~~sftIiT~~An~~l~~iHdR~MPvIL~~~e~~~~WL~~~~~-e~~~ll~P~p~~~l~~~~vsp~vn~~ 242 (243)
T d2aega1 171 GLTTDDLYGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRAPWD-EAKHLARPLPNDALIILSREPYGSSI 242 (243)
T ss_dssp CSEEEEEEEEEEECCCTTTTTTCSSCEECEECSHHHHHHHHHSCHH-HHGGGCSCCCTTSCEEEEEECTTCCC
T ss_pred CCcceeEEEEEeccCcHHHHhhcCCCCceEECCHHHHHHHcCCCHH-HHHHHhccCCccceEEEeCCCCccCC
Confidence 3578999999999999999999999 99999547889999998543 68889999999999999999999986
No 5
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=14.88 E-value=23 Score=31.62 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=15.5
Q ss_pred hhcccCceeecCChhhHhhh
Q 020715 91 QWLHDRMPVILGDKESSDAW 110 (322)
Q Consensus 91 s~IHdRMPVIL~~~E~~d~W 110 (322)
..+|+|+|++|...++++++
T Consensus 316 ~~~hqr~p~~~GS~~eV~~~ 335 (340)
T d1d9qa_ 316 TEIHQRVPLYIGSTEEVEKV 335 (340)
T ss_dssp SSTTCBCCEEEECHHHHHHH
T ss_pred CccccCCCeEEeCHHHHHHH
Confidence 56899999999766666643
No 6
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.35 E-value=38 Score=22.75 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=22.6
Q ss_pred eecceeeeecCCCCcccEEEEecCCCcEEEEEeecc
Q 020715 32 AVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDT 67 (322)
Q Consensus 32 Pa~GFYEW~~~g~kKqPy~I~~kdg~~f~~AGLwd~ 67 (322)
|+.||||=...+ +++|+. .||+-|+..=||+.
T Consensus 23 pi~GlyeV~~~~---~i~Yvs-~dG~y~i~G~l~~l 54 (60)
T d1eeja2 23 PVAGMKTVLTNS---GVLYIT-DDGKHIIQGPMYDV 54 (60)
T ss_dssp SSTTEEEEEETT---EEEEEE-TTSCEEEESCEEEC
T ss_pred CCCCeEEEEECC---EEEEEc-CCCCEEEEeEEEEc
Confidence 889999975533 578885 47776666667765
No 7
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=12.87 E-value=1.7e+02 Score=19.65 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=18.4
Q ss_pred EEEEecCCCcEEEEEeeccccCCCCceeE
Q 020715 49 YYVHFKDGRPLVFAALYDTWQSSEGEILY 77 (322)
Q Consensus 49 y~I~~kdg~~f~~AGLwd~w~~~~Ge~l~ 77 (322)
+.+..+||..+++-.-.....+..|+...
T Consensus 71 ~~~~~kdG~~~w~~~~~~pi~d~~G~v~~ 99 (109)
T d1n9la_ 71 LLNYRKDGTPFWNLLTVTPIKTPDGRVSK 99 (109)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEecCCeEEEEEEEEEEEECCCCCEEE
Confidence 55668899887665544545556676543
No 8
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.29 E-value=45 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=18.4
Q ss_pred CCeeEEeecceeeeecCCCCcccEEEEecCCC
Q 020715 26 KSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGR 57 (322)
Q Consensus 26 ~rRCLVPa~GFYEW~~~g~kKqPy~I~~kdg~ 57 (322)
-||||||-+.|.-- ..-||-.++|+.
T Consensus 69 PrrCVipy~~F~~~------d~DyfSF~pdRp 94 (103)
T d2gysa1 69 PRRCVIPCQSFVVT------DVDYFSFQPDRP 94 (103)
T ss_dssp EEEEEEECSCCCTT------CEEEEEEEESSC
T ss_pred CceEEeechheeee------ccceEeecCCCc
Confidence 48999999999653 244766666654
No 9
>d2hevf1 b.22.1.1 (F:58-183) Tumor necrosis factor ligand superfamily member 4, OX40L {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.83 E-value=28 Score=27.16 Aligned_cols=17 Identities=18% Similarity=0.474 Sum_probs=13.7
Q ss_pred cCCCeeEEeecceeeee
Q 020715 24 LPKSRCLAAVEGFYEWK 40 (322)
Q Consensus 24 ~~~rRCLVPa~GFYEW~ 40 (322)
+..+--||||||||=-.
T Consensus 31 VqnNSviI~CDG~Ylis 47 (126)
T d2hevf1 31 VQDNSVIINCDGFYLIS 47 (126)
T ss_dssp EETTEEECCBCEEEEEE
T ss_pred EECCcEEEecCceEEEE
Confidence 45788899999999753
No 10
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.52 E-value=37 Score=30.12 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=14.2
Q ss_pred hhcccCceeecCChhhHh
Q 020715 91 QWLHDRMPVILGDKESSD 108 (322)
Q Consensus 91 s~IHdRMPVIL~~~E~~d 108 (322)
..+|+|+|++|...++++
T Consensus 301 ~~~hqrtpl~~GS~~eV~ 318 (328)
T d1nuwa_ 301 TDIHQRAPIILGSPEDVT 318 (328)
T ss_dssp SSTTCBCCEEEECHHHHH
T ss_pred CccccCCCeEEeCHHHHH
Confidence 558999999997666555
Done!