Query 020717
Match_columns 322
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 07:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 74.6 39 0.0013 31.6 12.1 72 176-247 461-532 (597)
2 2jwa_A Receptor tyrosine-prote 59.8 5.7 0.00019 28.2 2.5 17 141-157 23-39 (44)
3 2dnx_A Syntaxin-12; snare, HAB 50.3 97 0.0033 24.9 10.9 96 173-268 9-118 (130)
4 3ghg_A Fibrinogen alpha chain; 45.5 1.1E+02 0.0036 31.4 9.8 96 176-271 51-150 (562)
5 1r8d_A Transcription activator 45.1 39 0.0013 25.7 5.3 29 231-259 75-103 (109)
6 3t97_B Nuclear pore complex pr 43.0 32 0.0011 26.1 4.4 37 232-268 4-44 (65)
7 2vz4_A Tipal, HTH-type transcr 42.7 26 0.0009 26.6 4.0 29 231-259 74-102 (108)
8 4fm3_A Uncharacterized hypothe 42.5 24 0.00082 28.5 3.9 32 219-250 66-97 (98)
9 1i84_S Smooth muscle myosin he 40.9 1.3E+02 0.0043 31.9 9.9 30 175-204 861-890 (1184)
10 1q08_A Zn(II)-responsive regul 35.4 1.2E+02 0.004 22.1 6.4 29 231-259 39-67 (99)
11 2akf_A Coronin-1A; coiled coil 34.6 44 0.0015 22.5 3.5 23 182-204 3-25 (32)
12 4e29_A Chimeric WZZB chain len 33.9 1.3E+02 0.0044 27.2 7.7 80 225-306 115-194 (248)
13 3g67_A Methyl-accepting chemot 33.8 2.4E+02 0.0081 24.6 10.2 92 176-268 5-96 (213)
14 3gpv_A Transcriptional regulat 33.4 1.1E+02 0.0037 24.7 6.5 30 230-259 94-123 (148)
15 4fla_A Regulation of nuclear P 32.3 1.7E+02 0.0058 24.6 7.7 88 172-264 23-112 (152)
16 3p7i_A PHND, subunit of alkylp 31.4 1.8E+02 0.006 25.7 8.0 61 199-259 245-312 (321)
17 2xu6_A MDV1 coiled coil; prote 30.6 45 0.0015 25.8 3.5 66 195-260 3-71 (72)
18 2akf_A Coronin-1A; coiled coil 29.2 48 0.0016 22.3 3.0 20 241-260 2-21 (32)
19 1r8e_A Multidrug-efflux transp 28.7 1.3E+02 0.0043 25.4 6.3 32 230-261 78-109 (278)
20 1iij_A ERBB-2 receptor protein 28.1 11 0.00037 25.7 -0.3 18 140-157 18-35 (35)
21 3gp4_A Transcriptional regulat 27.7 1.5E+02 0.0052 23.8 6.4 31 230-260 80-110 (142)
22 1q06_A Transcriptional regulat 27.4 1.6E+02 0.0055 23.3 6.4 30 230-259 78-107 (135)
23 3ibp_A Chromosome partition pr 27.1 1E+02 0.0034 29.3 5.9 44 178-223 3-46 (302)
24 3n5l_A Binding protein compone 26.7 3.1E+02 0.011 23.7 8.8 62 198-260 235-304 (310)
25 2dfs_A Myosin-5A; myosin-V, in 26.2 2.8E+02 0.0096 29.6 9.7 10 243-252 1028-1037(1080)
26 2qdq_A Talin-1; dimerisation d 26.1 80 0.0027 23.0 4.0 30 235-264 10-41 (50)
27 1deq_A Fibrinogen (alpha chain 26.0 3E+02 0.01 27.0 9.1 95 176-270 54-152 (390)
28 4akv_A Sorting nexin-33; trans 24.8 2.6E+02 0.0089 25.9 8.2 63 214-276 250-313 (386)
29 1m1j_C Fibrinogen gamma chain; 24.7 4.8E+02 0.016 25.2 11.8 84 175-258 35-118 (409)
30 3nmd_A CGMP dependent protein 23.7 2.4E+02 0.0081 21.7 6.4 41 219-259 21-61 (72)
31 1rtm_1 Mannose-binding protein 23.4 64 0.0022 24.7 3.3 26 235-260 1-26 (149)
32 2ovc_A Potassium voltage-gated 22.8 48 0.0016 22.3 2.1 20 172-191 4-23 (33)
33 3m91_A Proteasome-associated A 22.5 1.3E+02 0.0045 21.6 4.5 32 174-205 19-50 (51)
34 3edu_A Beta-I spectrin, spectr 22.5 2E+02 0.0068 23.3 6.3 85 156-263 88-172 (218)
35 4h22_A Leucine-rich repeat fli 22.3 2.6E+02 0.0089 22.8 6.8 59 176-248 35-93 (103)
36 1m1j_A Fibrinogen alpha subuni 21.9 5.5E+02 0.019 25.9 10.2 96 176-271 52-151 (491)
37 3uux_B Mitochondrial division 21.8 93 0.0032 28.7 4.5 67 194-260 158-227 (242)
38 3qao_A LMO0526 protein, MERR-l 20.7 1.4E+02 0.0048 26.2 5.3 42 218-259 62-104 (249)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.60 E-value=39 Score=31.58 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q 020717 176 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKEL 247 (322)
Q Consensus 176 l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatraLA~red~LEkEL 247 (322)
+-.-+.+||+.....-..+..+...+++..-+.++....+..+..+....-++..+-...+...-..+++++
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 345567777777777778888888888888888888888888877666555555554444444444444333
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.83 E-value=5.7 Score=28.18 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 020717 141 VSLVCGVWIGAIIRRRQ 157 (322)
Q Consensus 141 V~LV~aV~IGaiIRRRQ 157 (322)
+.++.|++++.|+|||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 67778889999999986
No 3
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.35 E-value=97 Score=24.85 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcce--eeeehhhccchHHHHHHHHhhhhHHHHHHHh------------
Q 020717 173 SVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVR--FRVTRKALKDPITQAAALAQKNSEATRALAM------------ 238 (322)
Q Consensus 173 ~~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvR--fRvtrr~LrdPI~etaAlAqknSeatraLA~------------ 238 (322)
+.++-.=...+-..+-..-+-+.-|-|.+..||.. ..-+|.-|.+=+.+|-.++++.++.++-|..
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~ 88 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ 88 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 34444434455555555566677888889999985 2334555666666778888888888888776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020717 239 QGDVLEKELGEIQKVLLAMQEQQQKQLELI 268 (322)
Q Consensus 239 red~LEkEL~e~Q~vl~amQeqq~KQleLi 268 (322)
+.-..||=..+.+.+|...|..|++=.+--
T Consensus 89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 89 QRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222567778888899999999987755543
No 4
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.55 E-value=1.1e+02 Score=31.40 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhc----ceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHH
Q 020717 176 LVGRIEKLEEDMKSSATILRVLSRQLEKLG----VRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQ 251 (322)
Q Consensus 176 l~~Ri~kLEe~vrs~~~~irvlSRqlEKLG----vRfRvtrr~LrdPI~etaAlAqknSeatraLA~red~LEkEL~e~Q 251 (322)
|.+=|.|-|.||...+.=+|..=-+++|.= .-++.+...||.=+.+....-....|++.-|-.|...|+.||..--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544443333222222211 1145555666666666666666667777788899999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020717 252 KVLLAMQEQQQKQLELILAI 271 (322)
Q Consensus 252 ~vl~amQeqq~KQleLil~i 271 (322)
+.+-++|..=++|+.=|..|
T Consensus 131 snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776665443
No 5
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=45.13 E-value=39 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 231 EATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 231 eatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
+....|..|.+.|++++.++|..+..++.
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 75 DRKAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999988877664
No 6
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=43.00 E-value=32 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=27.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 020717 232 ATRALAMQGDVLEKELGEIQKVLLA----MQEQQQKQLELI 268 (322)
Q Consensus 232 atraLA~red~LEkEL~e~Q~vl~a----mQeqq~KQleLi 268 (322)
-|..=+.+.|.+++||.|+|+=..+ +.+.-+|+.||=
T Consensus 4 ~t~~H~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 4 MTKQHQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455567889999999999986655 456677888873
No 7
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=42.73 E-value=26 Score=26.63 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 231 EATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 231 eatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
+....|..+.+.|++++.++|+.+..++.
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999999888877764
No 8
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=42.54 E-value=24 Score=28.48 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q 020717 219 ITQAAALAQKNSEATRALAMQGDVLEKELGEI 250 (322)
Q Consensus 219 I~etaAlAqknSeatraLA~red~LEkEL~e~ 250 (322)
+.++-+++.|.-+++..|-.+++.|++||||.
T Consensus 66 LAeAka~~~Ka~~~~~el~~~I~~LrqEl~~~ 97 (98)
T 4fm3_A 66 LAESKVLTQKSKDQLGELDKSLKRLRKQLGET 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56788899999999999999999999999985
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.90 E-value=1.3e+02 Score=31.92 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q 020717 175 NLVGRIEKLEEDMKSSATILRVLSRQLEKL 204 (322)
Q Consensus 175 ~l~~Ri~kLEe~vrs~~~~irvlSRqlEKL 204 (322)
.+..+++++++.+...-..+..+..++++|
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667766666666666666666666
No 10
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=35.44 E-value=1.2e+02 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 231 EATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 231 eatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
+....|..+.+.+|+++.+++..+..++.
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888887776654
No 11
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.56 E-value=44 Score=22.47 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=18.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhh
Q 020717 182 KLEEDMKSSATILRVLSRQLEKL 204 (322)
Q Consensus 182 kLEe~vrs~~~~irvlSRqlEKL 204 (322)
+|||++|..-+++.-|-..|++|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998888888877777665
No 12
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=33.90 E-value=1.3e+02 Score=27.23 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=61.9
Q ss_pred HHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCccccchhhcccccccccccc
Q 020717 225 LAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQME 304 (322)
Q Consensus 225 lAqknSeatraLA~red~LEkEL~e~Q~vl~amQeqq~KQleLil~ig~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 304 (322)
..+-+.++-..+..|..-|+.+|...+.++.+.++..-++|+-=|.|.+|.+|=+..... ++..-..-.|.-|.+-|+
T Consensus 115 ~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aaGI~kP~~~~--~q~lsdd~lF~LGs~aL~ 192 (248)
T 4e29_A 115 NQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADEAKITQPQIQQ--TQDVTQDTMFLLGSDALK 192 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCCS--CCCCCTTTGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc--cccCCCchhhhhhHHHHH
Confidence 344567888899999999999999999999999999999999999999999875543332 333334445677777776
Q ss_pred cc
Q 020717 305 TQ 306 (322)
Q Consensus 305 ~~ 306 (322)
.+
T Consensus 193 Ak 194 (248)
T 4e29_A 193 SM 194 (248)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=33.83 E-value=2.4e+02 Score=24.59 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020717 176 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 255 (322)
Q Consensus 176 l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatraLA~red~LEkEL~e~Q~vl~ 255 (322)
+...++.|...+..++.-+...+.++...--...-.-..+.+-+.++.....+..+.+..+..+..-+.+.+.+|.+++.
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 84 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQ 84 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444443333322222222233344445566666666666666677777777777888888887
Q ss_pred HHHHHHHHHHHHH
Q 020717 256 AMQEQQQKQLELI 268 (322)
Q Consensus 256 amQeqq~KQleLi 268 (322)
-+.+- ++|-.||
T Consensus 85 ~I~~I-a~qtnlL 96 (213)
T 3g67_A 85 NIMRI-ARETNIL 96 (213)
T ss_dssp HHHHH-HHHHHHH
T ss_pred HHHHH-HHHHHHH
Confidence 77664 5677776
No 14
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.40 E-value=1.1e+02 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=21.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 230 SEATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 230 SeatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
.+....|..+.+.|++++.++|+.+..++.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888877766654
No 15
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.29 E-value=1.7e+02 Score=24.63 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=56.1
Q ss_pred ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeee--ehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q 020717 172 ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRV--TRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGE 249 (322)
Q Consensus 172 ~~~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRv--trr~LrdPI~etaAlAqknSeatraLA~red~LEkEL~e 249 (322)
...+|+.-+..||..-.+=+++=.. +.+|=.-|-= .-..|+| =.+...++++..||...|+.-..+||.|+.+
T Consensus 23 ~~~elik~L~~le~sassDa~vrq~----Ia~LP~eVsd~s~l~klkD-k~~~e~l~~~veeA~~~L~eYn~rL~~E~~d 97 (152)
T 4fla_A 23 LTEELIKALQDLENAASGDATVRQK----IASLPQEVQDVSLLEKITD-KEAAERLSKTVDEACLLLAEYNGRLAAELED 97 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----HHTSCGGGTCGGGGGGCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccccchHHHHHH----HHcCCccccCHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777775554443332 3333222110 0112222 2467889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020717 250 IQKVLLAMQEQQQKQ 264 (322)
Q Consensus 250 ~Q~vl~amQeqq~KQ 264 (322)
-..++..+.+-.+-|
T Consensus 98 R~~L~~~L~~~~~~~ 112 (152)
T 4fla_A 98 RRQLARMLVEYTQNQ 112 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 887776665444433
No 16
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=31.35 E-value=1.8e+02 Score=25.66 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=42.2
Q ss_pred HHHHhhcce-eeeehhhccchHHHHHHHHhhhhHHH------HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 199 RQLEKLGVR-FRVTRKALKDPITQAAALAQKNSEAT------RALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 199 RqlEKLGvR-fRvtrr~LrdPI~etaAlAqknSeat------raLA~red~LEkEL~e~Q~vl~amQe 259 (322)
..++++|+. |...-..--+||++....-+++.-.. ..=..|..-+|++|.+++.-+-+|+.
T Consensus 245 ~~l~~~g~~gf~~~~~~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (321)
T 3p7i_A 245 AVLERLGWAPFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSA 312 (321)
T ss_dssp HHHHHHTEEEEEECCGGGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCCeeeCCHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457789987 88888888899999876665432221 23345666778888888877666653
No 17
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.58 E-value=45 Score=25.84 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 020717 195 RVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEA---TRALAMQGDVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 195 rvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSea---traLA~red~LEkEL~e~Q~vl~amQeq 260 (322)
..+++.||=||||=-++--+.++==.+.+.|-..---+ ++.|-|.|-.||++|.++..-|.-|||-
T Consensus 3 ~~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qey 71 (72)
T 2xu6_A 3 QTLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEEY 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888887777766666555666665544434 4566688889999999998888877763
No 18
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.17 E-value=48 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 020717 241 DVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 241 d~LEkEL~e~Q~vl~amQeq 260 (322)
..||+|++.+|.++.-+|+.
T Consensus 2 srlee~~r~l~~ivq~lq~r 21 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQER 21 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 47999999999998877753
No 19
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=28.74 E-value=1.3e+02 Score=25.37 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=25.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 020717 230 SEATRALAMQGDVLEKELGEIQKVLLAMQEQQ 261 (322)
Q Consensus 230 SeatraLA~red~LEkEL~e~Q~vl~amQeqq 261 (322)
.+....|..+.+.|++++.++|+.+..++...
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999998888777643
No 20
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.06 E-value=11 Score=25.75 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 020717 140 VVSLVCGVWIGAIIRRRQ 157 (322)
Q Consensus 140 ~V~LV~aV~IGaiIRRRQ 157 (322)
.+.++.++.+|.+||||.
T Consensus 18 ll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 18 LLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHhheEEeecC
Confidence 455677888899999983
No 21
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.68 E-value=1.5e+02 Score=23.77 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=21.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 020717 230 SEATRALAMQGDVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 230 SeatraLA~red~LEkEL~e~Q~vl~amQeq 260 (322)
.+....|..+.+.|++++.++|..+..++..
T Consensus 80 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 110 (142)
T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFK 110 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888887777666543
No 22
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=27.43 E-value=1.6e+02 Score=23.26 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 230 SEATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 230 SeatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
.+....|..+.+.+|+++.++|..+..++.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888887776654
No 23
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.13 E-value=1e+02 Score=29.34 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHH
Q 020717 178 GRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAA 223 (322)
Q Consensus 178 ~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~eta 223 (322)
++|+.||+.+...+.--..+-++.+.|..++. +-+-+-|.-.+|
T Consensus 3 ~~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~--~L~~~ap~W~~a 46 (302)
T 3ibp_A 3 HMIASLSDSVSNAREERMALRQEQEQLQSRIQ--SLMQRAPVWLAA 46 (302)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHChHHHHH
Confidence 67889999998888888888888888877653 223344554443
No 24
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=26.74 E-value=3.1e+02 Score=23.68 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=42.1
Q ss_pred HHHHHhhcce-eeeehhhccchHHHHHHHHhhhhHHH-------HHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 020717 198 SRQLEKLGVR-FRVTRKALKDPITQAAALAQKNSEAT-------RALAMQGDVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 198 SRqlEKLGvR-fRvtrr~LrdPI~etaAlAqknSeat-------raLA~red~LEkEL~e~Q~vl~amQeq 260 (322)
...++++|+. |.-.--.--+||++....=++ .++- ..=..|..-+|++|.++++.+-+|+..
T Consensus 235 ~~~l~~~g~~gf~~~~~~~y~~ir~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (310)
T 3n5l_A 235 KKVLADLQWSKFQASDDDQLLPIRQLELFKQR-TDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQK 304 (310)
T ss_dssp HHHHHHTTEEEEEECCGGGGHHHHHHHHHHHH-HHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCceeCCHHHHHHHHHHHHHHHH-HHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557889986 888878888999987443332 2221 233456677888888888877777643
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.20 E-value=2.8e+02 Score=29.57 Aligned_cols=10 Identities=10% Similarity=0.189 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 020717 243 LEKELGEIQK 252 (322)
Q Consensus 243 LEkEL~e~Q~ 252 (322)
||+|...++.
T Consensus 1028 L~~e~~~L~q 1037 (1080)
T 2dfs_A 1028 LKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 26
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=26.07 E-value=80 Score=23.04 Aligned_cols=30 Identities=40% Similarity=0.505 Sum_probs=21.2
Q ss_pred HHHhhhhhH--HHHHHHHHHHHHHHHHHHHHH
Q 020717 235 ALAMQGDVL--EKELGEIQKVLLAMQEQQQKQ 264 (322)
Q Consensus 235 aLA~red~L--EkEL~e~Q~vl~amQeqq~KQ 264 (322)
.+.+||++| |+||.+-++-|.++-.++-+.
T Consensus 10 Ei~Aqe~iLr~ErELEeAr~~La~iR~~kY~~ 41 (50)
T 2qdq_A 10 IIAAQEEMLRKERELEEARKKLAQIRQQQYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677765 899999999999887766543
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.02 E-value=3e+02 Score=27.00 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHH----HHHhhhhhHHHHHHHHH
Q 020717 176 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATR----ALAMQGDVLEKELGEIQ 251 (322)
Q Consensus 176 l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatr----aLA~red~LEkEL~e~Q 251 (322)
|.+=|.|.|.++...+.-++..=-.+.|.-.-.-..=+.+.+=+.+.++.+++|..+.- .|-.|+..|.+-+.+-=
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455544444444433333333333333333335566777778888887765443 44445554444443322
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020717 252 KVLLAMQEQQQKQLELILA 270 (322)
Q Consensus 252 ~vl~amQeqq~KQleLil~ 270 (322)
--|-.||..=.+|+--|..
T Consensus 134 ~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2455666665555544433
No 28
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=24.79 E-value=2.6e+02 Score=25.94 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=36.5
Q ss_pred hccchHHHHHHHHhhhhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 020717 214 ALKDPITQAAALAQKNSEATRALAMQGDV-LEKELGEIQKVLLAMQEQQQKQLELILAIGKTGK 276 (322)
Q Consensus 214 ~LrdPI~etaAlAqknSeatraLA~red~-LEkEL~e~Q~vl~amQeqq~KQleLil~ig~a~~ 276 (322)
.|...+.+++...++.++....-|.+++. |..-|.+-...+.++.+.=...-.-+....+|.+
T Consensus 250 ~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~k 313 (386)
T 4akv_A 250 ALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQR 313 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666665655443 6666777666666665543333334444444443
No 29
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.72 E-value=4.8e+02 Score=25.15 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 020717 175 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 254 (322)
Q Consensus 175 ~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatraLA~red~LEkEL~e~Q~vl 254 (322)
++..+|..||+.+..+...-...-.-+.++=....-.-+--.+=+...-.-++|+-|-...|-....--|.+|.++|..+
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35566667776666654444433333333322222111111111222222223333333333333333455666677666
Q ss_pred HHHH
Q 020717 255 LAMQ 258 (322)
Q Consensus 255 ~amQ 258 (322)
..+|
T Consensus 115 ~~~~ 118 (409)
T 1m1j_C 115 IMNS 118 (409)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 6544
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.74 E-value=2.4e+02 Score=21.70 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 219 ITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 219 I~etaAlAqknSeatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
|.+.+.+-++--|-.+..-.+++.||++|.|-...+.-+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444566666677777777776666655544
No 31
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=23.37 E-value=64 Score=24.73 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH
Q 020717 235 ALAMQGDVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 235 aLA~red~LEkEL~e~Q~vl~amQeq 260 (322)
||.++.+.||+++..+|+-|..++..
T Consensus 1 ~~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 1 AIEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36677888899999999988888864
No 32
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=22.83 E-value=48 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=16.4
Q ss_pred ccchhHHHHHHHHHHhHhHH
Q 020717 172 ESVNLVGRIEKLEEDMKSSA 191 (322)
Q Consensus 172 ~~~~l~~Ri~kLEe~vrs~~ 191 (322)
...++.+|+.|+|+.|..+-
T Consensus 4 ~~~Sm~~Rl~kVE~qv~~md 23 (33)
T 2ovc_A 4 DEISMMGRVVKVEKQVQSIE 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 56678999999999987653
No 33
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.55 E-value=1.3e+02 Score=21.56 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 020717 174 VNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 205 (322)
Q Consensus 174 ~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLG 205 (322)
..|.+|=++|.+.++..-.=|..|.-+||||+
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34778888888888888888888888888886
No 34
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=22.53 E-value=2e+02 Score=23.34 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHhhcccccCCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHH
Q 020717 156 RQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRA 235 (322)
Q Consensus 156 RQW~Ri~~e~gr~gg~~~~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatra 235 (322)
..|.+++.- ...|-.+|++... +...-+.++.+-...+=....|.+|+. ..-..+.+
T Consensus 88 ~~W~~L~~~-----------~~~R~~~L~~a~~-----~~~F~~~~~e~~~Wl~ek~~~l~~~~g-------~dl~~v~~ 144 (218)
T 3edu_A 88 EMWADLLEL-----------IDTRMQLLAASYD-----LHRYFYTGAEILGLIDEKHRELPEDVG-------LDASTAES 144 (218)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCC-------------------
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhCCCccC-------CCHHHHHH
Confidence 367766655 3456666665431 122333333333333323344444443 23355677
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 020717 236 LAMQGDVLEKELGEIQKVLLAMQEQQQK 263 (322)
Q Consensus 236 LA~red~LEkEL~e~Q~vl~amQeqq~K 263 (322)
|-.+-+-||.||..++..+..+++..++
T Consensus 145 l~~~h~~~e~dL~~~~~~v~~l~~~a~~ 172 (218)
T 3edu_A 145 FHRVHTAFERELHLLGVQVQQFQDVATR 172 (218)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999988888776543
No 35
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.27 E-value=2.6e+02 Score=22.83 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q 020717 176 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELG 248 (322)
Q Consensus 176 l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatraLA~red~LEkEL~ 248 (322)
|+-.++.+||.+-..-.=.+-.+|.+|++- +....+-.+..+.-..|.+|.+++|+.++
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~K--------------r~~~~L~~~~~~lk~~L~qRD~LI~E~~~ 93 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREK--------------HAHSILQFQFAEVKEALKQREEMLEPKLA 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888777777777777777652 12233444555555678899999988765
No 36
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.90 E-value=5.5e+02 Score=25.93 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHH----HhhhhhHHHHHHHHH
Q 020717 176 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRAL----AMQGDVLEKELGEIQ 251 (322)
Q Consensus 176 l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqknSeatraL----A~red~LEkEL~e~Q 251 (322)
|.+=|.|-|++++..+.=++-.=-.+.++---.-..=+.+.+=+.+.++.+++|..+.-.+ -.|...|..-+.+-=
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776665555544444444444444444567777888888888887655444 344444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020717 252 KVLLAMQEQQQKQLELILAI 271 (322)
Q Consensus 252 ~vl~amQeqq~KQleLil~i 271 (322)
.-|-+||..=.+|+-=|..|
T Consensus 132 ~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777766666666544
No 37
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.76 E-value=93 Score=28.73 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcceeeeehhhccchHHHHHHHHhh---hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 020717 194 LRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQK---NSEATRALAMQGDVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 194 irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAqk---nSeatraLA~red~LEkEL~e~Q~vl~amQeq 260 (322)
...+.+.||=||||=.++..++++==.+.+.|-.. .=+=++.|-+.|-.||.||.+++.-+.-+||.
T Consensus 158 ~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 158 SQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999888887777655555555443 33445566678889999999999988888874
No 38
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=20.65 E-value=1.4e+02 Score=26.20 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=27.8
Q ss_pred hHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 020717 218 PITQAAALAQK-NSEATRALAMQGDVLEKELGEIQKVLLAMQE 259 (322)
Q Consensus 218 PI~etaAlAqk-nSeatraLA~red~LEkEL~e~Q~vl~amQe 259 (322)
||.+...+... ..+....|..|.+.|++++.+++..+..++.
T Consensus 62 sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~ 104 (249)
T 3qao_A 62 PLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDL 104 (249)
T ss_dssp CHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 2355677888889999999888888776654
Done!