Query 020717
Match_columns 322
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 07:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020717.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020717hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j0ha2 b.71.1.1 (A:506-588) N 28.9 11 0.0008 25.2 1.6 46 26-75 29-74 (83)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 25.1 1.3E+02 0.0094 22.7 7.5 23 182-204 53-75 (129)
3 d1rzua_ c.87.1.8 (A:) Glycogen 20.7 29 0.0021 28.9 3.0 23 189-211 18-40 (477)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 20.4 1.7E+02 0.012 22.0 7.3 57 147-204 61-117 (129)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 20.4 1.3E+02 0.0091 21.3 6.3 41 220-260 4-44 (107)
6 d1r8da_ a.6.1.3 (A:) Multidrug 18.5 1E+02 0.0075 21.3 5.3 41 218-258 61-102 (109)
7 d1t72a_ a.7.12.1 (A:) Phosphat 14.2 2.1E+02 0.015 21.3 6.5 25 172-196 5-29 (215)
8 d3b8ma1 d.58.60.1 (A:64-330) E 13.9 2.6E+02 0.019 22.4 7.5 63 215-277 125-189 (267)
9 g1avo.1 a.24.8.1 (A:,B:) Prote 13.0 96 0.007 25.5 4.4 30 235-265 107-136 (200)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 12.2 87 0.0063 22.5 3.5 51 155-205 22-76 (106)
No 1
>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=28.94 E-value=11 Score=25.22 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.0
Q ss_pred ccccccCCCCcCCCCCcccceeeEeecccccCCCcccCCCCcccccccCC
Q 020717 26 ATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNN 75 (322)
Q Consensus 26 ~~~~~~~~~~~~~p~pi~~rh~~~~~~~~~~~~~~~~~~~~~~~~lka~s 75 (322)
..|+|..+..++||.++..++...-.+|-.|... .++.-.+|+||.
T Consensus 29 v~N~S~~~~~v~lp~~~~~~~~~~l~~~~~~~~~----~~~~~ltL~Py~ 74 (83)
T d1j0ha2 29 IINRSDQKADIPIPLDARGTWLVNLLTGERFAAE----AETLCTSLPPYG 74 (83)
T ss_dssp EEECSSSCEEEECCCCCSSEEEEETTTCCEEECC----SSSCEEEECTTC
T ss_pred EEeCCCCCEEEEccCccccCcEEEecCCcccccc----CCceEEEECCcE
Confidence 4577778889999999888888766666666553 234456788775
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.06 E-value=1.3e+02 Score=22.68 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhh
Q 020717 182 KLEEDMKSSATILRVLSRQLEKL 204 (322)
Q Consensus 182 kLEe~vrs~~~~irvlSRqlEKL 204 (322)
.+|...+.+++-|-+-+||.+.|
T Consensus 53 ~f~~~~~elA~dii~kakqId~L 75 (129)
T d1ykhb1 53 EFSNTIDELSTDIILKTRQINKL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 46777788888888889999887
No 3
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.71 E-value=29 Score=28.95 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHhhcceeeee
Q 020717 189 SSATILRVLSRQLEKLGVRFRVT 211 (322)
Q Consensus 189 s~~~~irvlSRqlEKLGvRfRvt 211 (322)
|..++++.|||+|.++|..++|.
T Consensus 18 Gl~~vv~~La~~L~~~Gh~V~Vi 40 (477)
T d1rzua_ 18 GLADVVGALPIALEAHGVRTRTL 40 (477)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCeEEEE
Confidence 55567788999999999999985
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.39 E-value=1.7e+02 Score=22.03 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q 020717 147 VWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKL 204 (322)
Q Consensus 147 V~IGaiIRRRQW~Ri~~e~gr~gg~~~~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKL 204 (322)
++...++..+|+.-+-..= ++-+.++..=..||.+||+.++....-....-+..|+|
T Consensus 61 lA~dii~kakqId~LI~sL-P~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~l 117 (129)
T d1ykhb1 61 LSTDIILKTRQINKLIDSL-PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667889998666553 22233667788999999999998865544444444544
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.38 E-value=1.3e+02 Score=21.28 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 020717 220 TQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQ 260 (322)
Q Consensus 220 ~etaAlAqknSeatraLA~red~LEkEL~e~Q~vl~amQeq 260 (322)
++..+-.++.-+-...+..+..-||.++.|.+.|+..|...
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l 44 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444455555666778888889999999999999888743
No 6
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=18.53 E-value=1e+02 Score=21.33 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=22.3
Q ss_pred hHHHHHHHHh-hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 020717 218 PITQAAALAQ-KNSEATRALAMQGDVLEKELGEIQKVLLAMQ 258 (322)
Q Consensus 218 PI~etaAlAq-knSeatraLA~red~LEkEL~e~Q~vl~amQ 258 (322)
||.+...+-. .+.+-..++..+.+.|++++.+++..+..++
T Consensus 61 sl~eI~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 102 (109)
T d1r8da_ 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp CHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 2344455666667777777776665554443
No 7
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=14.20 E-value=2.1e+02 Score=21.26 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHHhHhHHHHHHH
Q 020717 172 ESVNLVGRIEKLEEDMKSSATILRV 196 (322)
Q Consensus 172 ~~~~l~~Ri~kLEe~vrs~~~~irv 196 (322)
.+..+-..|+.+.+.+..+...+.-
T Consensus 5 ~~~~~~~~L~~l~~~l~~M~~~v~~ 29 (215)
T d1t72a_ 5 GGMKLFKELEETKEQVIKMAKLVQE 29 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788888888888877665543
No 8
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=13.94 E-value=2.6e+02 Score=22.43 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHhh--hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 020717 215 LKDPITQAAALAQK--NSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKL 277 (322)
Q Consensus 215 LrdPI~etaAlAqk--nSeatraLA~red~LEkEL~e~Q~vl~amQeqq~KQleLil~ig~a~~~ 277 (322)
|..=|+.+..-+.+ +.++-..++.+..-|++++.-.+.....-++++=++|+-=|.|.++.+|
T Consensus 125 L~~YI~~v~~~v~~~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~IA~~agI 189 (267)
T d3b8ma1 125 LSGYIDYISALVVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAAGI 189 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44445554443333 6788889999999999999999999998888889999999999999996
No 9
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.01 E-value=96 Score=25.49 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020717 235 ALAMQGDVLEKELGEIQKVLLAMQEQQQKQL 265 (322)
Q Consensus 235 aLA~red~LEkEL~e~Q~vl~amQeqq~KQl 265 (322)
+++.||+.| +||+.++....+++++-.|=+
T Consensus 107 GV~VQe~vl-~~l~~ve~~a~~~~~~i~kY~ 136 (200)
T g1avo.1 107 GVAVQEKVF-ELMTSLHTKLEGFHTQISKYF 136 (200)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 456678888 688888888888888876654
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.16 E-value=87 Score=22.52 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=30.3
Q ss_pred HHHHHHHhhcccccCCc----ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 020717 155 RRQWRRVCGEKARAEGR----ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 205 (322)
Q Consensus 155 RRQW~Ri~~e~gr~gg~----~~~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLG 205 (322)
-++|.++...+....+. ....|..-++.+|.++...-.+|++..+.-+|-|
T Consensus 22 ~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~ 76 (106)
T d1lvfa_ 22 FQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFN 76 (106)
T ss_dssp HHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGT
T ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcC
Confidence 35788888765332211 2345566677777777777777776554444443
Done!