BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020718
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 40/181 (22%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-------ISYRRKEFIKIM 152
+VF DISID K+AGRIV+ LY D+ P A F +L +G G + Y+ F +++
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
PN++ GG + R +G+ E+ G RD S
Sbjct: 69 PNFMIQGG--------DFTRGNGTGGES----------------------IYGTTFRDES 98
Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272
K G + G + NG++F I T +P LD +V GRV++G++V +K
Sbjct: 99 FSG---KAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKK 155
Query: 273 I 273
+
Sbjct: 156 V 156
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 61/225 (27%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ D+ I + GR++ GL+G + P F +L +G G Y+ +F +++ +++
Sbjct: 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMI 74
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G G ++ ER +E PG ++A
Sbjct: 75 QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 113
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
GKD NG++F I T + LD +V G+VLEGMEV K+ K
Sbjct: 114 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK 158
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
T D R ++P V++ +CG +E
Sbjct: 159 T-----------------DSR--------DKPLKDVIIADCGKIE 178
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 61/225 (27%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ D+ I + GR++ GL+G + P F +L +G G Y+ +F +++ +++
Sbjct: 5 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMI 64
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G G ++ ER +E PG ++A
Sbjct: 65 QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 103
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
GKD NG++F I T + LD +V G+VLEGMEV K+ K
Sbjct: 104 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK 148
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
T D R ++P V++ +CG +E
Sbjct: 149 T-----------------DSR--------DKPLKDVIIADCGKIE 168
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 61/225 (27%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ D+ I + GR+VIGL+G + P F +L +G G Y+ +F +++ +++
Sbjct: 12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 71
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G G ++ ER +E PG ++A
Sbjct: 72 QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 110
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
GKD NG++F I T + LD +V G+VLEGMEV K+ K
Sbjct: 111 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTK 155
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
T G ++P V + +CG +E
Sbjct: 156 T-------------------------DGRDKPLKDVTIADCGKIE 175
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 61/225 (27%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ D+ I + GR+VIGL+G + P F +L +G G Y+ +F +++ +++
Sbjct: 12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 71
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G G ++ ER +E PG ++A
Sbjct: 72 QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 110
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
GKD NG++F I T + LD +V G+VLEGMEV K+ K
Sbjct: 111 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTK 155
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
T G ++P V + +CG +E
Sbjct: 156 T-------------------------DGRDKPLKDVTIADCGKIE 175
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 37/181 (20%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ D+ ID + GRI IGL+G AP F L +G G Y+ F +++ N++
Sbjct: 11 TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMI 70
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G ++ E+ +E N + G ++A
Sbjct: 71 QGGDFT-----NFDGTGGKSIYGEKFADE-NLNVKHFVGALSMA---------------- 108
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
G + NG++F I T +P LD + +V G+VL+GM+V +I + K
Sbjct: 109 ---------------NAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTK 153
Query: 278 T 278
T
Sbjct: 154 T 154
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ D+ ID + GRI IGL+G AP F L +G G Y+ F +++ N++
Sbjct: 11 TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMI 70
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G ++ E+ +E N + G ++A
Sbjct: 71 QGGDFT-----NFDGTGGKSIYGEKFADE-NLNVKHFVGALSMA---------------- 108
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
G + NG++F I T +P LD +V G+VL+GM+V +I + K
Sbjct: 109 ---------------NAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTK 153
Query: 278 T 278
T
Sbjct: 154 T 154
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T RV+ D+ I GK GRIVIGL+G + P A F L G Y +F +++ +++
Sbjct: 6 TDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMI 65
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G G ++ E+ +E
Sbjct: 66 QGGDFTRGDGT-----GGRSIYGEKFADE------------------------------N 90
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
KL G + G D NG++F I T +P LD +V G++LEGM+V KI
Sbjct: 91 FKL-KHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKI 145
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +V+ DI+I + GR+VIGL+G+ P F L SG G Y+ F +++ N++
Sbjct: 5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMI 64
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G ++ R +E NL K
Sbjct: 65 QGGDFT-----NFDGTGGKSIYGTRFDDE------------NL----------------K 91
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
IK + G + NG++F + T +P LD +V G+V+EGM+V +K+ K
Sbjct: 92 IKHFVGA----VSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTK 147
Query: 278 T 278
T
Sbjct: 148 T 148
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 55/193 (28%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------YRRKEFIKIM 152
+VF DI+I GK++GRIV+ LY D P A F +L +G GI ++ +F +I+
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLET---ERLMEEWKANNERCPGTKNLAGTVGIIVR 209
PN++ GG + R +G+ E+ E+ +E PG ++A
Sbjct: 65 PNFMIQGG--------DFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMA-------- 108
Query: 210 DPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV 269
G + NG++F + T + LD +V GRV+EG++V
Sbjct: 109 -----------------------NAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDV 145
Query: 270 AEKIGEVKTVQEN 282
VK V+ N
Sbjct: 146 ------VKAVESN 152
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRK 146
K +RVFLD++IDG AGRIV+ LY D AP F L +G AG + Y+
Sbjct: 3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 147 EFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGI 206
F +++ N++ GG + G G + E + +
Sbjct: 63 TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMK-------------------- 102
Query: 207 IVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEG 266
P + +A + G + NG++F I T +P L+ +V G+V+ G
Sbjct: 103 ------HDEPFVVSMANK----------GPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146
Query: 267 MEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
EV KI +KT + NRP + V++ NCG
Sbjct: 147 QEVVTKIEYLKTNSK-------------------------NRPLADVVILNCG 174
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 36/176 (20%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +VF D+ I K GRIVIGL+G+ P F +L +G G Y+ F +++ +++
Sbjct: 7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMI 66
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + R G+ G+ + + P
Sbjct: 67 QGG--------DFTARDGTG---------------------------GMSIYGETFPDEN 91
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
KL G + G D NG++F I LD +V G+VL+GM V I
Sbjct: 92 FKL-KHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSI 146
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 36/176 (20%)
Query: 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
T +VF D+ I K GRIVIGL+G P F +L +G G Y+ +F +++ +++
Sbjct: 15 TAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMI 74
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
GG + G GT G+ + + P
Sbjct: 75 QGGDITTG-----------------------------------DGTGGVSIYGETFPDEN 99
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
KL G + G D NG++F I LD +V G+V++GM V I
Sbjct: 100 FKL-KHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSI 154
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F KI+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 7 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 64
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 65 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 88
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 89 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 146
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 2 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 60 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 83
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 84 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 142
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAM 142
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 61 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 22 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 79
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 80 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 103
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 104 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 161
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 44/181 (24%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 11 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 68
Query: 156 VQHGGVRSYGVDAELARRSGS---NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
+ GG + R +G+ ++ E+ +E PG ++A
Sbjct: 69 MCQGG--------DFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMA----------- 109
Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272
G + NG++F I T + LD +V G+V EGM + E
Sbjct: 110 --------------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEA 149
Query: 273 I 273
+
Sbjct: 150 M 150
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
VF +ISI+ K GRIV LY ++ P A F L +G G Y+ F +++P ++ GG
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 161 VRSYGVDAELARRSGS---NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
+ R +G+ ++ E+ +E PG ++A
Sbjct: 65 --------DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMA---------------- 100
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + NG++F I T + LD +V G V+EG+++ K+
Sbjct: 101 ---------------NAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 141
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
VF +ISI+ K GRIV LY ++ P A F L +G G Y+ F +++P ++ GG
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 161 VRSYGVDAELARRSGS---NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
+ R +G+ ++ E+ +E PG ++A
Sbjct: 66 --------DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMA---------------- 101
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + NG++F I T + LD +V G V+EG+++ K+
Sbjct: 102 ---------------NAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 142
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG ++ G ++ E+ +E PG ++A
Sbjct: 61 MCQGGNFTH-----CNGTGGKSIYGEKFEDENFILKHTGPGILSMA-------------- 101
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 102 -----------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 62/219 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
V+LD+ +GK GR+V+ L D P A F +L +G G Y+ F +++P+++ G
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 66
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
N G K++ G S+ P +
Sbjct: 67 ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 90
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
+ G + G + NG++F I T + LD +V G V+EGM+V +KI
Sbjct: 91 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 143
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
E+ GS R +K K+++T+CG
Sbjct: 144 ESFGSKSGRTSK-------------------KIVITDCG 163
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 45/188 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
+V+ D+ DG+ GR+V LY D P A F +L +G G Y F +++P+++ G
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQG 62
Query: 160 GVRSYGVDAELARRSGSNLETERLMEE-WKANNERCPGTKNLAGTVGIIVRDPSKPPPKI 218
G + G G ++ + +E +K +++R PG ++A
Sbjct: 63 GDFTAG-----NGTGGKSIYGGKFPDENFKKHHDR-PGLLSMA----------------- 99
Query: 219 KLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
G + NG++F I T P LD +V G V++G ++ +K+
Sbjct: 100 --------------NAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKV----- 140
Query: 279 VQENTGSP 286
E+ GSP
Sbjct: 141 --ESLGSP 146
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 62/221 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
V+LD+ +GK GR+V+ L D P A F +L +G G Y+ F +++P+++ G
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
N G K++ G S+ P +
Sbjct: 66 ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 89
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
+ G + G + NG++F I T + LD +V G V+EGM+V +KI
Sbjct: 90 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 142
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
E+ GS R +K K+++T+CG +
Sbjct: 143 ESFGSKSGRTSK-------------------KIVITDCGQL 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 62/219 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
V+LD+ +GK GR+V+ L D P A F +L +G G Y+ F +++P+++ G
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
N G K++ G S+ P +
Sbjct: 66 ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 89
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
+ G + G + NG++F I T + LD +V G V+EGM+V +KI
Sbjct: 90 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 142
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
E+ GS R +K K+++T+CG
Sbjct: 143 ESFGSKSGRTSK-------------------KIVITDCG 162
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 62/221 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
V+LD+ +GK GR+V+ L D P A F +L +G G Y+ F +++P+++ G
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 64
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
N G K++ G S+ P +
Sbjct: 65 ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 88
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
+ G + G + NG++F I T + LD +V G V+EGM+V +KI
Sbjct: 89 LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 141
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
E+ GS R +K K+++T+CG +
Sbjct: 142 ESFGSKSGRTSK-------------------KIVITDCGQL 163
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 3 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG ++ G ++ E+ +E PG ++A
Sbjct: 61 MCQGGNFTH-----HNGTGGKSIYGEKFEDENFILKHTGPGILSMA-------------- 101
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 102 -----------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 2 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG ++ G ++ E+ +E PG ++A
Sbjct: 60 MCQGGDFTH-----HNGTGGKSIYGEKFEDENFILKHTGPGILSMA-------------- 100
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + NG++F I T + LD +V G+V EGM + E +
Sbjct: 101 -----------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 2 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + R +G+ G K++ G K
Sbjct: 60 MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 83
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ ++ G + G + NG++F I T + LD +V G V EGM + E +
Sbjct: 84 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAM 141
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
R F DI+I+ + AGR+V L+ D P F L +G G + Y+ F ++
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
+ +++ GG S G R G ++ +E A
Sbjct: 71 VKDFMVQGGDFSEG-----NGRGGESIYGGFFEDESFA---------------------- 103
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
V + + GKD NG++F I TK +P LD +V G+V+ G EV
Sbjct: 104 ---------VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVR 154
Query: 272 KIGEVKT 278
+I KT
Sbjct: 155 EIENQKT 161
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 44/187 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
R F DI+I+ + AGR+V L+ D P F L +G G + Y+ F ++
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
+ +++ GG S G R G ++ +E A
Sbjct: 88 VKDFMVQGGDFSEG-----NGRGGESIYGGFFEDESFA---------------------- 120
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
V + GKD NG++F I TK +P LD +V G+V+ G EV
Sbjct: 121 ---------VKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVR 171
Query: 272 KIGEVKT 278
+I KT
Sbjct: 172 EIENQKT 178
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
R F DI+I+ + AGR+V L+ D P F L +G G + Y+ F ++
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
+ +++ GG S G R G ++ +E A
Sbjct: 71 VKDFMVQGGDFSEG-----NGRGGESIYGGFFEDESFA---------------------- 103
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
V + + GKD NG++F I TK +P LD +V G+V+ G EV
Sbjct: 104 ---------VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVR 154
Query: 272 KIGEVKT 278
+I KT
Sbjct: 155 EIENQKT 161
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 43/180 (23%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-------ISYRRKEFIKIMP 153
V+ DISI AGRI + L+ D P A F +L +G G + Y F +I+P
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 154 NYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSK 213
++ GG + R G+ E+ G RD +
Sbjct: 82 QFMIQGG--------DFTRGDGTGGES----------------------IYGSKFRDENF 111
Query: 214 PPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ + G + NG++F I T P LD +V G+VLEGMEV + I
Sbjct: 112 ------VYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSI 165
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
+PT VF DI++DG+ GR+ L+ D P A F +L +G G Y+ F +I+P +
Sbjct: 2 NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
GG + R +G+ G K++ G K
Sbjct: 60 XCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 83
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
+ ++ G + G + NG++F I T + LD +V G+V EG + E
Sbjct: 84 DENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVE 139
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
VF D+ DG+ GRI + L+ + P A F +L +G G ++ F +++P++V GG
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGG 68
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
++ + G+ ++ ++++ N D P +
Sbjct: 69 --------DITKHDGTGGQS-IYGDKFEDEN-----------------FDVKHTGPGLLS 102
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
+A Q G++ N ++FVI K + LD +V G V +GM+ +KI
Sbjct: 103 MANQ----------GQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKI------- 145
Query: 281 ENTGSPYFRVAKLI 294
E+ GSP V + I
Sbjct: 146 ESFGSPKGSVCRRI 159
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
RVF DI I AGRIV+ L D P A F +L +G G Y F +++P ++ G
Sbjct: 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQG 71
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
G + + G+ G K++ G K +
Sbjct: 72 G--------DFVKGDGT-------------------GGKSIYG---------RKFDDENF 95
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+ +G + G + NG++F I T LD +V GRV++G V +K+
Sbjct: 96 QLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKM 149
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 44/190 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI--------SYRRKEFIKI 151
RVF D+ I G+ GRIV+ L+ D P A F +L +G GI ++ F +I
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
+ ++ GG S G E E +K + E N
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENF--HYKHDKEGLLSMAN------------ 122
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
G + NG++F I T +P LD +V G+V++GM VA+
Sbjct: 123 ----------------------AGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAK 160
Query: 272 KIGEVKTVQE 281
+ V+ E
Sbjct: 161 ILENVEVKGE 170
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 36/173 (20%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
VF DI+ +G G I L+ D P AA F +L +G G Y F +++P+++ GG
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG 63
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
+ G G+ E + K N PG ++A
Sbjct: 64 DFTAGNGTGGKSIYGAKFADENF--QLKHNK---PGLLSMA------------------- 99
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + NG++F I T + LD +V G V++GM V + I
Sbjct: 100 ------------NAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAI 140
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 80/227 (35%), Gaps = 69/227 (30%)
Query: 103 LDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI--------SYRRKEFIKIMPN 154
DI I+ + GRI+ L+ D P F L SG G+ Y+ F +++ N
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
++ GG S G G + E I+ D +
Sbjct: 84 FMIQGGDFSEGNGKGGESIYGGYFKDENF----------------------ILKHDRA-- 119
Query: 215 PPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIG 274
+ GK NG++F I TK +P LD +V G V+ G EV E+I
Sbjct: 120 ------------FLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIE 167
Query: 275 EVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
+KT +RPY+ V V +CG++
Sbjct: 168 NLKTDAA-------------------------SRPYADVRVIDCGVL 189
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 42/180 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT------AGISYRRKEFIKIMP 153
+VF DISID +AGRI+ L+ D P F +L +G + Y+ F +I+P
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 154 NYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSK 213
++ GG + G + G ++ +E PG ++A
Sbjct: 65 QFMCQGGDITNGNGS-----GGESIYGRSFTDENFNMKHDQPGLLSMA------------ 107
Query: 214 PPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + N ++F+I P LD +V G+V+EGM V ++
Sbjct: 108 -------------------NAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREM 148
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 42/180 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT------AGISYRRKEFIKIMP 153
+VF DISID +AGRI+ L+ D P F +L +G + Y+ F +I+P
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 154 NYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSK 213
++ GG + G + G ++ +E PG ++A
Sbjct: 65 QFMCQGGDITNGNGS-----GGESIYGRSFTDENFNMKHDQPGLLSMA------------ 107
Query: 214 PPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
G + N ++F I P LD +V G+V+EGM V ++
Sbjct: 108 -------------------NAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREM 148
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%)
Query: 95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
K+ + V+ D+ + +S GRIV+ L D P A F +L G Y+ F +I+P
Sbjct: 24 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG 83
Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
++ GG ++ A+N GT G + P
Sbjct: 84 FMVQGG-------------------------DYTAHN----------GTGGRSIYGEKFP 108
Query: 215 PPKIKL-VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
+L ++G L + G NG++F I + LD +V G V+EGM+V KI
Sbjct: 109 DENFELKHTKEGILSM--ANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
+V++DI I K AGRI + L D P A F L + G ++ F +I+P ++ G
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 64
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
G + +G+ G K++ G K +
Sbjct: 65 G--------DFTNHNGT-------------------GGKSIYG---------KKFDDENF 88
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
++ G + G + NG++F + + LD +V G V EG++V +I
Sbjct: 89 ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 142
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
+V++DI I K AGRI + L D P A F L + G ++ F +I+P ++ G
Sbjct: 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 72
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
G + +G+ G K++ G K +
Sbjct: 73 G--------DFTNHNGT-------------------GGKSIYG---------KKFDDENF 96
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
++ G + G + NG++F + + LD +V G V EG++V +I
Sbjct: 97 ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 150
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 69/196 (35%), Gaps = 42/196 (21%)
Query: 93 ANKDPTK-RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG-----TAGISYRRK 146
AN P VF D+SI G+ GR+ I L+ D P A F +G I Y+
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 147 EFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGI 206
F +++ +++ GG G +A E A PG ++A +
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSA-----PGLLSMANS--- 115
Query: 207 IVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEG 266
G NG +F I LD +V G++++G
Sbjct: 116 ----------------------------GPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147
Query: 267 MEVAEKIGEVKTVQEN 282
+ V KI V T N
Sbjct: 148 LLVMRKIENVPTGPNN 163
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
+V+ DI I K AGRI L D P A F L + G ++ F +I+P + G
Sbjct: 14 QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQG 73
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
G + +G+ G K++ G K +
Sbjct: 74 G--------DFTNHNGT-------------------GGKSIYG---------KKFDDENF 97
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
++ G + G + NG++F + + LD +V G V EG++V +I
Sbjct: 98 ILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 151
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 38/225 (16%)
Query: 78 DELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG 137
++LPN+ KN RV++DI ++ + GR+ I L+ D+ PAG F L
Sbjct: 6 EDLPNSGKNP------------RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQL--- 50
Query: 138 TAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGT 197
T G +YR V G Y + + R L + + +
Sbjct: 51 TNGKTYR-----------VNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSN 99
Query: 198 KNLAGTVGIIVRDPSKPPPKIKLVARQGK----LEIDQEEVGKDPNGTEFVIVTKDS--- 250
+ AGTV +P P + K L +E G + F+I D
Sbjct: 100 GSSAGTV--YCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPS 157
Query: 251 ---PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAK 292
ELD +V+G+V G++V +KI + P F + K
Sbjct: 158 NVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGK 202
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPY 287
G + NG++F I +P LD V GRV +GMEV ++I VK V T PY
Sbjct: 114 GSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVK-VNPKTDKPY 165
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 36/153 (23%)
Query: 113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR 172
GRIV L+ P A F L AG YR F +I+PN++ GG + G
Sbjct: 22 GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGT---- 77
Query: 173 RSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQE 232
G ++ ++ +E + G ++A
Sbjct: 78 -GGRSIYGDKFADENFSRKHDKKGILSMA------------------------------- 105
Query: 233 EVGKDPNGTEFVIVTKDSPELDASSLVVGRVLE 265
G + NG++F I T + LD +V G V +
Sbjct: 106 NAGPNTNGSQFFITTAVTSWLDGKHVVFGEVAD 138
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 168 AELARRSGSN-LETERLMEEWKANNERCPGT-KNLAGTVGIIVRDPSKPPPKIKLVARQG 225
AELARR N + R+++++ GT + A G D P K G
Sbjct: 40 AELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFT-----G 94
Query: 226 KLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
+ G D NG++F + + LD + GRV +G+ + ++G V+T
Sbjct: 95 AGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET 147
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 168 AELARRSGSN-LETERLMEEWKANNERCPGT-KNLAGTVGIIVRDPSKPPPKIKLVARQG 225
AELARR N + R+++++ GT + A G D P K G
Sbjct: 40 AELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFT-----G 94
Query: 226 KLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
+ G D NG++F + + LD + GRV +G+ + ++G V+T
Sbjct: 95 AGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET 147
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 168 AELARRSGSN-LETERLMEEWKANNERCPGT-KNLAGTVGIIVRDPSKPPPKIKLVARQG 225
AELARR N + R+++++ GT + A G D P K G
Sbjct: 40 AELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFT-----G 94
Query: 226 KLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
+ G D NG++F + + LD + GRV +G+ + ++G V+T
Sbjct: 95 AGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET 147
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 54/177 (30%)
Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
SAG I + L AP F V+ +G Y F +++P ++ GG
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGF-------- 60
Query: 171 ARRSGSNLETERLMEEWKAN----NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGK 226
TE+ M++ K N NE G +N GT+ + AR
Sbjct: 61 ---------TEQ-MQQKKPNPPIKNEADNGLRNTRGTIAM---------------ARTAD 95
Query: 227 LEIDQEEVGKDPNGTEFVIVTKDSPELDASS-----LVVGRVLEGMEVAEKIGEVKT 278
KD ++F I D+ LD V G+V++GM+VA+KI +V T
Sbjct: 96 ---------KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 143
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 54/177 (30%)
Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
SAG I + L AP F V+ +G Y F +++P ++ GG
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGF-------- 60
Query: 171 ARRSGSNLETERLMEEWKAN----NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGK 226
TE+ M++ K N NE G +N GT+ + AR
Sbjct: 61 ---------TEQ-MQQKKPNPPIKNEADNGLRNTRGTIAM---------------ARTAD 95
Query: 227 LEIDQEEVGKDPNGTEFVIVTKDSPELDASS-----LVVGRVLEGMEVAEKIGEVKT 278
KD ++F I D+ LD V G+V++GM+VA+KI +V T
Sbjct: 96 ---------KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 143
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSP 286
G + NG++F I P LD V G+V++G+E +++ E V E T P
Sbjct: 93 GPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL-EKLPVNEKTYRP 143
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 227 LEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
+ G + NG++F I T P LD V G+V +G ++ I +V+T
Sbjct: 90 FMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRT 141
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSP 286
G + NG++F I P LD V G+V++G+E +++ E V E T P
Sbjct: 99 GPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL-EKLPVNEKTYRP 149
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 45/198 (22%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-----YRRKEFIKIMPNY 155
VF+DI++ G+ L+ + P + F +G ++ Y+ F +++ +
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
+ GG + +GS G++ I
Sbjct: 122 MIQGG--------DFINHNGS-------------------------GSLSIYGEKFDDEN 148
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGE 275
IK ++G L + G + NG +F I TK LD ++V GR+++ + +
Sbjct: 149 FDIKH-DKEGLLSMANS--GPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN----DSLLL 201
Query: 276 VKTVQENTGSPYFRVAKL 293
+K ++ + +PY K+
Sbjct: 202 LKKIENVSVTPYIYKPKI 219
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 216 PKIKLVARQGKLEIDQEEVGKDPN--GTEFVIVTKDSPELDASSLVVGRVLEGMEV 269
P++K R+G L + + K PN G++F I P+L+ ++ G++++G E
Sbjct: 93 PELK-YDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFET 147
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
GK N +EF I K L+ + GRV+ G++V + +++T
Sbjct: 111 GKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 135 VSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERL-MEEWKANNE 192
+ G +G+S R K++ + N+++ G+ S V +R+ E + E+WKA NE
Sbjct: 19 IGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHXKRTIQTAEALGVPYEQWKALNE 77
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Length = 191
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 135 VSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERL-MEEWKANNE 192
+ G +G+S R K++ + N+++ G+ S V +R+ E + E+WKA NE
Sbjct: 20 IGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQTAEALGVPYEQWKALNE 78
>pdb|1C7Z|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C7Z|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C81|A Chain A, Michaelis Complex Of Fructose-2,6-Bisphosphatase
Length = 191
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 135 VSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERL-MEEWKANNE 192
+ G +G+S R K++ + N+++ G+ S V +R+ E + E+WKA NE
Sbjct: 20 IGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQTAEALGVPYEQWKALNE 78
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 135 VSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERL-MEEWKANNE 192
+ G +G+S R K+F + +V+ ++ V + + E RL E+WKA NE
Sbjct: 265 IGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNE 323
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 135 VSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERL-MEEWKANNE 192
+ G +G+S R K++ + N++Q G+ S V +R+ E + E++KA NE
Sbjct: 231 IGGDSGLSVRGKQYAYALANFIQSQGISSLKVFTSRMKRTIQTAEALGVPYEQFKALNE 289
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 146 KEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLME 185
K+ I Y QHGGVR +GV +A G + RL E
Sbjct: 118 KKICDIKQAYTQHGGVRPFGVSLLIA---GIDKNEARLFE 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,171,969
Number of Sequences: 62578
Number of extensions: 368342
Number of successful extensions: 809
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 132
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)