Query 020718
Match_columns 322
No_of_seqs 216 out of 1419
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 3.5E-52 7.5E-57 393.6 14.8 164 97-322 7-179 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 8.1E-51 1.7E-55 355.8 17.8 167 94-322 35-203 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 6.5E-45 1.4E-49 301.5 11.9 163 97-321 9-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 7.3E-43 1.6E-47 321.8 19.4 164 94-322 48-220 (249)
5 cd01926 cyclophilin_ABH_like c 100.0 9.8E-43 2.1E-47 304.3 18.1 158 99-319 1-164 (164)
6 PLN03149 peptidyl-prolyl isome 100.0 1.4E-42 3.1E-47 309.1 17.9 162 98-321 18-186 (186)
7 PTZ00060 cyclophilin; Provisio 100.0 5E-42 1.1E-46 304.9 19.7 162 98-322 15-183 (183)
8 KOG0111 Cyclophilin-type pepti 100.0 5.1E-43 1.1E-47 311.3 9.7 166 94-322 132-298 (298)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 5.6E-41 1.2E-45 289.9 16.2 152 110-322 6-158 (158)
10 KOG0881 Cyclophilin type pepti 100.0 1.2E-41 2.5E-46 279.1 10.5 154 98-321 9-163 (164)
11 cd01923 cyclophilin_RING cyclo 100.0 5E-40 1.1E-44 286.0 17.6 152 101-322 2-154 (159)
12 cd01928 Cyclophilin_PPIL3_like 100.0 7E-40 1.5E-44 283.4 17.2 149 101-319 3-152 (153)
13 PRK10903 peptidyl-prolyl cis-t 100.0 2.2E-39 4.8E-44 289.5 20.1 158 97-322 27-190 (190)
14 cd01927 cyclophilin_WD40 cyclo 100.0 1.8E-39 3.8E-44 279.4 16.4 142 111-317 5-147 (148)
15 cd01921 cyclophilin_RRM cyclop 100.0 4.9E-39 1.1E-43 281.5 16.9 147 111-322 5-160 (166)
16 cd01922 cyclophilin_SpCYP2_lik 100.0 9.7E-39 2.1E-43 274.2 15.9 141 111-317 5-146 (146)
17 cd01925 cyclophilin_CeCYP16-li 100.0 8.7E-38 1.9E-42 274.9 18.2 156 97-322 4-161 (171)
18 PRK10791 peptidyl-prolyl cis-t 100.0 4.4E-37 9.6E-42 268.7 17.2 154 101-322 2-164 (164)
19 KOG0882 Cyclophilin-related pe 100.0 7.4E-37 1.6E-41 294.8 12.1 153 97-319 403-556 (558)
20 cd01920 cyclophilin_EcCYP_like 100.0 1.5E-35 3.3E-40 256.8 15.9 145 111-317 5-154 (155)
21 KOG0883 Cyclophilin type, U bo 100.0 2.2E-36 4.7E-41 286.8 11.5 157 96-320 273-430 (518)
22 KOG0884 Similar to cyclophilin 100.0 6.3E-36 1.4E-40 244.2 11.5 143 112-318 9-152 (161)
23 PF00160 Pro_isomerase: Cyclop 100.0 3.4E-35 7.4E-40 253.0 15.4 155 102-320 1-155 (155)
24 KOG0865 Cyclophilin type pepti 100.0 6.8E-36 1.5E-40 260.2 9.6 162 97-321 2-167 (167)
25 cd00317 cyclophilin cyclophili 100.0 1.3E-34 2.9E-39 247.2 15.8 141 112-317 6-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 5.1E-33 1.1E-37 245.7 15.3 154 110-276 4-165 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.7E-32 5.8E-37 258.0 11.8 158 94-321 8-167 (439)
28 KOG0415 Predicted peptidyl pro 100.0 5.4E-30 1.2E-34 241.0 12.8 157 101-322 3-163 (479)
29 KOG0882 Cyclophilin-related pe 96.7 0.002 4.3E-08 64.2 5.1 134 112-281 111-247 (558)
30 TIGR03268 methan_mark_3 putati 94.6 0.14 3E-06 52.0 8.2 104 113-276 201-304 (503)
31 PRK00969 hypothetical protein; 94.4 0.16 3.5E-06 51.6 8.2 104 113-276 204-307 (508)
32 TIGR03268 methan_mark_3 putati 94.3 0.31 6.7E-06 49.5 9.8 123 113-278 375-498 (503)
33 PRK00969 hypothetical protein; 92.8 0.73 1.6E-05 47.0 9.6 120 113-278 378-500 (508)
34 COG4070 Predicted peptidyl-pro 92.7 0.27 5.9E-06 48.5 6.3 102 113-275 203-305 (512)
35 COG4070 Predicted peptidyl-pro 91.7 0.62 1.3E-05 46.1 7.3 40 114-154 377-416 (512)
36 PF12903 DUF3830: Protein of u 80.9 9.2 0.0002 33.1 7.7 35 114-154 9-43 (147)
37 PF07172 GRP: Glycine rich pro 42.9 30 0.00065 27.6 3.3 21 46-66 3-23 (95)
38 PF04126 Cyclophil_like: Cyclo 34.5 28 0.0006 28.8 2.0 37 240-276 71-114 (120)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-52 Score=393.56 Aligned_cols=164 Identities=32% Similarity=0.616 Sum_probs=151.9
Q ss_pred CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccCeeEeeCccccCccc
Q 020718 97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPNYVQHGGVRSYGVDA 168 (322)
Q Consensus 97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~gfviQgGd~~~~~~~ 168 (322)
.+++|||||+|||+++||||||||.|.+|+||+||+.||+|.+| +.|+|+.||||+++|||||||++.+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g--- 83 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG--- 83 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC---
Confidence 57899999999999999999999999999999999999999876 5799999999999999999999987
Q ss_pred ccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEc
Q 020718 169 ELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVT 247 (322)
Q Consensus 169 ~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl 247 (322)
+|+|| +|||..|.||.+..+|. .+++||| ||.|||+||||||||+
T Consensus 84 ---nGtGGeSIYG~~FdDEnF~lKHd------rpflLSM-------------------------AN~GpNTNgSQFFITT 129 (372)
T KOG0546|consen 84 ---NGTGGESIYGEKFDDENFELKHD------RPFLLSM-------------------------ANRGPNTNGSQFFITT 129 (372)
T ss_pred ---CCCCcccccccccccccceeccC------cchhhhh-------------------------hcCCCCCCCcceEEeC
Confidence 89999 99999999999887763 3333444 7899999999999999
Q ss_pred CCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 248 KDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 248 ~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
.++|||||+|+|||+||.|++||+.|+.+.|+.. ++|+.+|+|.+||+|.
T Consensus 130 ~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~-------------------------skP~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 130 VPTPHLDGKHVVFGQVIKGKEVVREIENLETDEE-------------------------SKPLADVVISDCGELV 179 (372)
T ss_pred CCCCCcCCceeEEeeEeechhHHHHHhccccccC-------------------------CCCccceEeccccccc
Confidence 9999999999999999999999999999999997 7999999999999984
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-51 Score=355.83 Aligned_cols=167 Identities=36% Similarity=0.700 Sum_probs=154.3
Q ss_pred CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhc-CCCcccccCcEEEEeccCeeEeeCccccCccccccc
Q 020718 94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVS-GTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR 172 (322)
Q Consensus 94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~-~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~ 172 (322)
.++++.+|||||.+++++.|||+|+||++.+|+||+||.+||. +.++.+|.|++||||+++|||||||++.+ +
T Consensus 35 ~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g------~ 108 (217)
T KOG0880|consen 35 GPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKG------D 108 (217)
T ss_pred CCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccC------C
Confidence 5678999999999999999999999999999999999999999 66788999999999999999999999876 7
Q ss_pred CCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCC
Q 020718 173 RSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSP 251 (322)
Q Consensus 173 g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p 251 (322)
++|+ ++||++|+||++..+| .|+|.|+| +|.|||+||||||||+...+
T Consensus 109 gtGg~SIyG~~F~DENf~LkH-----------------------------~rpG~lSM--An~GpDtNGsQFfItT~~t~ 157 (217)
T KOG0880|consen 109 GTGGKSIYGEKFPDENFKLKH-----------------------------DRPGRLSM--ANAGPDTNGSQFFITTVKTP 157 (217)
T ss_pred CCCCeEeecCCCCCccceeec-----------------------------CCCceEee--eccCCCCCCceEEEEecCCc
Confidence 8888 9999999999877765 34455554 78999999999999999999
Q ss_pred CCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 252 ELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 252 ~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
||||+|+|||+|++|||+|.+|+.++||.+ ++|.++|+|.+||.|+
T Consensus 158 wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~-------------------------dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 158 WLDGKHVVFGQVLEGMDVVRKIENVKTDER-------------------------DKPLEDVVIANCGELP 203 (217)
T ss_pred cccCceeEEeeehhhHHHHHHHHhcccCCC-------------------------CCccccEEEeecCccc
Confidence 999999999999999999999999999997 8999999999999875
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-45 Score=301.52 Aligned_cols=163 Identities=31% Similarity=0.548 Sum_probs=147.9
Q ss_pred CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC-----cccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718 97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA-----GISYRRKEFIKIMPNYVQHGGVRSYGVDAELA 171 (322)
Q Consensus 97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~-----g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~ 171 (322)
.++.||||++|+|.++|||.||||.|.+|+|++||++.|++.. -..|+++.|||||++|||||||+..+
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~g------ 82 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNG------ 82 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecC------
Confidence 4789999999999999999999999999999999999999863 36799999999999999999999865
Q ss_pred cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718 172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS 250 (322)
Q Consensus 172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~ 250 (322)
+|+|- ++|+.+|++|++..+|.. +|.|+| +|+++++||.|||||....
T Consensus 83 DGtG~~sIy~~~F~DENFtlkH~~-----------------------------PGlLSM--ANsG~~tNGCQFFITcakc 131 (177)
T KOG0879|consen 83 DGTGVASIYGSTFPDENFTLKHDG-----------------------------PGLLSM--ANSGKDTNGCQFFITCAKC 131 (177)
T ss_pred CCceEEEEcCCCCCCcceeeecCC-----------------------------Cceeec--cccCCCCCCceEEEEeccc
Confidence 67775 899999999988877633 344444 7899999999999999999
Q ss_pred CCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718 251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321 (322)
Q Consensus 251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l 321 (322)
.+||++|+|||||++||.++++|+.+++..+ +||+.+|+|+.||++
T Consensus 132 dfLD~KHVVFGrvldGlli~rkIEnvp~G~N-------------------------nkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 132 DFLDGKHVVFGRVLDGLLIMRKIENVPTGPN-------------------------NKPKLPVVIVQCGEM 177 (177)
T ss_pred ccccCceEEEeeeehhhhhhhhhhcCCCCCC-------------------------CCCCCcEEEeecccC
Confidence 9999999999999999999999999999887 899999999999985
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=7.3e-43 Score=321.80 Aligned_cols=164 Identities=25% Similarity=0.399 Sum_probs=141.3
Q ss_pred CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccC-eeEeeCcccc
Q 020718 94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPN-YVQHGGVRSY 164 (322)
Q Consensus 94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~g-fviQgGd~~~ 164 (322)
+..++++|||||+|++++.|||+||||.+.||+||+||++||++.++ .+|+|+.||||+++ |+||+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 44668899999999999999999999999999999999999987643 24999999999986 8999999752
Q ss_pred CcccccccCCCCCCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEE
Q 020718 165 GVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFV 244 (322)
Q Consensus 165 ~~~~~~~~g~gg~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFf 244 (322)
.|.+++|..|.+|..... |+.+|+|+| +|.++|+||||||
T Consensus 128 ---------~g~s~~G~~f~dE~~~~~------h~~~G~LsM-------------------------an~GpntngSQFf 167 (249)
T PTZ00221 128 ---------FNVSSTGTPIADEGYRHR------HTERGLLTM-------------------------ISEGPHTSGSVFG 167 (249)
T ss_pred ---------CCccCCCCcccCcccccc------CCCCCEEEe-------------------------CcCCCCCccceEE
Confidence 234556777777754322 456666666 5678999999999
Q ss_pred EEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 245 IVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 245 Itl~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
||+.++++||++|+|||||++|||||++|++++++.+ ++|.++|+|.+||+|.
T Consensus 168 ITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~-------------------------grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 168 ITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV-------------------------GRPLLPVTVSFCGALT 220 (249)
T ss_pred EECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC-------------------------CCCCCCeEEEECeEec
Confidence 9999999999999999999999999999999998765 8999999999999973
No 5
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=9.8e-43 Score=304.31 Aligned_cols=158 Identities=34% Similarity=0.673 Sum_probs=134.7
Q ss_pred ceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc-----ccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718 99 KRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-----ISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR 173 (322)
Q Consensus 99 ~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g-----~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g 173 (322)
++||||+.++|+..|+|+||||.+.||+||+||++||++.++ .+|+++.||||+++|+|||||+..+ ++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~------~g 74 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRG------NG 74 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCC------CC
Confidence 479999999999999999999999999999999999997544 5899999999999999999997643 34
Q ss_pred CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718 174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE 252 (322)
Q Consensus 174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~ 252 (322)
.++ +++++.+++|.... .|+.+|+|+| ++.++++++|||||++++.++
T Consensus 75 ~~~~~~~g~~~~~e~~~~------~h~~~G~lsm-------------------------a~~~~~~~~sqFfIt~~~~~~ 123 (164)
T cd01926 75 TGGKSIYGEKFPDENFKL------KHTGPGLLSM-------------------------ANAGPNTNGSQFFITTVKTPW 123 (164)
T ss_pred CCCCcccCCccCCCCccc------cCCCccEEEe-------------------------eECCCCCcccEEEEEeCCCCc
Confidence 444 55666665553221 2446666666 345689999999999999999
Q ss_pred CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718 253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319 (322)
Q Consensus 253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG 319 (322)
||++|+|||||++|||||++|++++++ + ++|.++|+|.+||
T Consensus 124 Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~-------------------------~~P~~~i~I~~cG 164 (164)
T cd01926 124 LDGKHVVFGKVVEGMDVVKKIENVGSG-N-------------------------GKPKKKVVIADCG 164 (164)
T ss_pred cCCcccEEEEEEEcHHHHHHHHcCCCC-C-------------------------CCCcCCeEEEECC
Confidence 999999999999999999999999998 4 8999999999998
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.4e-42 Score=309.08 Aligned_cols=162 Identities=30% Similarity=0.542 Sum_probs=137.0
Q ss_pred CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC---c--ccccCcEEEEeccCeeEeeCccccCccccccc
Q 020718 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA---G--ISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR 172 (322)
Q Consensus 98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~---g--~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~ 172 (322)
+++|||||+++++..|||+||||.+.+|+||+||++||+++. + ..|+++.||||+++|+|||||+..+ +
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~------~ 91 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKG------D 91 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccC------C
Confidence 568999999999999999999999999999999999998652 1 2399999999999999999997543 4
Q ss_pred CCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCC
Q 020718 173 RSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSP 251 (322)
Q Consensus 173 g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p 251 (322)
+.|+ ++++..|++|.... .|+.+|+|+| ++.++++++||||||+.+.|
T Consensus 92 g~g~~~~~g~~f~~e~~~~------~h~~~G~lsm-------------------------a~~g~~s~~sqFfIt~~~~p 140 (186)
T PLN03149 92 GTGCVSIYGSKFEDENFIA------KHTGPGLLSM-------------------------ANSGPNTNGCQFFITCAKCD 140 (186)
T ss_pred CCCcccccCCccCCccccc------ccCCCCEEEE-------------------------eeCCCCCcccEEEEECCCCC
Confidence 5554 55666666553221 2455566665 45679999999999999999
Q ss_pred CCCCCCcEEEEEE-cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718 252 ELDASSLVVGRVL-EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321 (322)
Q Consensus 252 ~LDg~~~VFGrVi-~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l 321 (322)
+||++|+|||||+ +|||||++|++++++++ ++|..+|+|.+||++
T Consensus 141 ~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~-------------------------~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 141 WLDNKHVVFGRVLGDGLLVVRKIENVATGPN-------------------------NRPKLACVISECGEM 186 (186)
T ss_pred ccCCCceEEEEEEECcHHHHHHHHcCCCCCC-------------------------CCCcCCeEEEeCEeC
Confidence 9999999999999 89999999999999876 899999999999986
No 7
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=5e-42 Score=304.89 Aligned_cols=162 Identities=32% Similarity=0.588 Sum_probs=136.0
Q ss_pred CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCC------CcccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT------AGISYRRKEFIKIMPNYVQHGGVRSYGVDAELA 171 (322)
Q Consensus 98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~------~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~ 171 (322)
+++||||++++++..|+|+||||.+.||+||+||++||++. +..+|+|+.||||+++|+|||||+..+
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~------ 88 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH------ 88 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC------
Confidence 67899999999999999999999999999999999999842 234899999999999999999998643
Q ss_pred cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718 172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS 250 (322)
Q Consensus 172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~ 250 (322)
++.++ ++++..+++|.... .|+.+|+|+| ++.++++++|||||++.+.
T Consensus 89 ~g~~g~~~~g~~~~~e~~~~------~h~~~G~lsm-------------------------a~~g~~~~~sqFfIt~~~~ 137 (183)
T PTZ00060 89 NGTGGESIYGRKFTDENFKL------KHDQPGLLSM-------------------------ANAGPNTNGSQFFITTVPC 137 (183)
T ss_pred CCCCCCcccccccCCccccc------cCCCCCEEEe-------------------------ccCCCCCCcceEEEEeCCC
Confidence 34444 55566665553221 2344566665 3456899999999999999
Q ss_pred CCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
++||++|+|||||++|||||++|+++++.. ++|.++|+|++||+|+
T Consensus 138 ~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~--------------------------~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 138 PWLDGKHVVFGKVIEGMEVVRAMEKEGTQS--------------------------GYPKKPVVVTDCGELQ 183 (183)
T ss_pred cccCCCccEEEEEEccHHHHHHHHccCCCC--------------------------CCCcCCeEEEEeEEcC
Confidence 999999999999999999999999988843 7999999999999985
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-43 Score=311.35 Aligned_cols=166 Identities=30% Similarity=0.558 Sum_probs=155.8
Q ss_pred CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718 94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR 173 (322)
Q Consensus 94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g 173 (322)
...-+++||+++.|++...|||+++|..|..|+|++||+.||.+.+|+.|+|+.||||||.||+||||++++ +|
T Consensus 132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~------ng 205 (298)
T KOG0111|consen 132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNG------NG 205 (298)
T ss_pred hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccC------CC
Confidence 455689999999999999999999999999999999999999999999999999999999999999999876 89
Q ss_pred CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718 174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE 252 (322)
Q Consensus 174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~ 252 (322)
+|| +|||.+|.+|++..+| +..|+|+| +|+++|+|||||||++....|
T Consensus 206 tggksiygkkfddenf~lkh------t~pgtlsm-------------------------ansgantngsqffict~ktdw 254 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKH------TMPGTLSM-------------------------ANSGANTNGSQFFICTEKTDW 254 (298)
T ss_pred CCCcccccccccccceeeec------CCCceeec-------------------------cccCCCCCCceEEEEeccccc
Confidence 998 9999999999887764 56777777 789999999999999999999
Q ss_pred CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
|||+|+|||.|++||+||+++++.++.. |+|..+|+|.+||+++
T Consensus 255 ldgkhvvfghv~eg~~vvrq~e~qgsks--------------------------gkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 255 LDGKHVVFGHVVEGMNVVRQVEQQGSKS--------------------------GKPQQKVKIVECGEIE 298 (298)
T ss_pred ccCceeEEeeecchHHHHHHHHhccCCC--------------------------CCcceEEEEEeccccC
Confidence 9999999999999999999999999876 8999999999999986
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-41 Score=289.86 Aligned_cols=152 Identities=30% Similarity=0.474 Sum_probs=126.4
Q ss_pred eeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhcc
Q 020718 110 KSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKA 189 (322)
Q Consensus 110 ~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~ 189 (322)
+..|+|+||||++.||+||+||++||+.+ ||+|+.||||++||||||||++.+ .+.|+ .++.+++|+..
T Consensus 6 t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g---~Ydg~~FHRVi~~FmiQgGd~~~~------~g~gg--~~~~f~~E~~~ 74 (158)
T COG0652 6 TNKGDITIELYPDKAPKTVANFLQLVKEG---FYDGTIFHRVIPGFMIQGGDPTGG------DGTGG--PGPPFKDENFA 74 (158)
T ss_pred ccCCCEEEEECCCcCcHHHHHHHHHHHcC---CCCCceEEEeecCceeecCCCCCC------CCCCC--CCCCCcccccc
Confidence 44999999999999999999999999999 999999999999999999999753 45555 23778888776
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccC-CCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHH
Q 020718 190 NNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVG-KDPNGTEFVIVTKDSPELDASSLVVGRVLEGME 268 (322)
Q Consensus 190 ~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~-p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmd 268 (322)
..+. .|.+|+++| ||.+ ||+|||||||++.+.+|||++|+|||+|++|||
T Consensus 75 ~~~~----~~~~G~lsM-------------------------A~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~Gmd 125 (158)
T COG0652 75 LNGD----RHKRGTLSM-------------------------ARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMD 125 (158)
T ss_pred cccc----cCCcceEeE-------------------------cccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHH
Confidence 6542 256777777 4555 999999999999999999999999999999999
Q ss_pred HHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 269 VAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 269 vl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
+|++|++..+..... ..+.|...|+|.+.++++
T Consensus 126 vvdkI~~~~~~~~~~---------------------~~~~~~~~~~i~~~~~~~ 158 (158)
T COG0652 126 VVDKIKNGDTDDSGY---------------------VQDVPADPVKILSVKIVE 158 (158)
T ss_pred HHHHHHcCCccCCCc---------------------ccCCCCCCeEEeeeeeeC
Confidence 999999998876410 114666778887767653
No 10
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=279.15 Aligned_cols=154 Identities=26% Similarity=0.448 Sum_probs=138.7
Q ss_pred CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718 98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS- 176 (322)
Q Consensus 98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg- 176 (322)
.+.|+++++ +|.|++|||-+.||+||+||.+|++.+ ||+|..||||+++||||||||+. +|.||
T Consensus 9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg---YYn~v~FHRii~DFmiQGGDPTG-------TGRGGa 73 (164)
T KOG0881|consen 9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG---YYNGVIFHRIIKDFMIQGGDPTG-------TGRGGA 73 (164)
T ss_pred CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc---cccceeeeehhhhheeecCCCCC-------CCCCcc
Confidence 357899999 999999999999999999999999999 99999999999999999999973 67777
Q ss_pred CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718 177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS 256 (322)
Q Consensus 177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~ 256 (322)
++||..|.+|+....+ |..+|.++| +|.+||+|||||||||.+.+||||+
T Consensus 74 SIYG~kF~DEi~~dLk-----hTGAGILsM-------------------------ANaGPnTNgSQFFiTLAPt~~LDGK 123 (164)
T KOG0881|consen 74 SIYGDKFEDEIHSDLK-----HTGAGILSM-------------------------ANAGPNTNGSQFFITLAPTQWLDGK 123 (164)
T ss_pred ccccchhhhhhhhhhc-----ccchhhhhh-------------------------hccCCCCCCceEEEEecCccccCCc
Confidence 9999999999875533 445666666 7899999999999999999999999
Q ss_pred CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718 257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321 (322)
Q Consensus 257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l 321 (322)
|++||||..||+|++++..+.|+.. +||..+|.|.+.-++
T Consensus 124 HTIFGRV~~Gm~vikr~G~v~Td~~-------------------------DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 124 HTIFGRVCSGMEVIKRMGMVETDNS-------------------------DRPIDEVKIIKAYPS 163 (164)
T ss_pred ceeehhhhhhHHHHHhhcceecCCC-------------------------CCCccceeeEeeecC
Confidence 9999999999999999999999987 899999999876543
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=5e-40 Score=285.96 Aligned_cols=152 Identities=24% Similarity=0.418 Sum_probs=129.7
Q ss_pred EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE 179 (322)
Q Consensus 101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~ 179 (322)
|.|+++ .|+|+||||.+.||+||+||++||+.+ +|+|+.||||+++|++||||+.. ++.|+ +++
T Consensus 2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~rv~~~~~iq~Gd~~~-------~g~~~~~~~ 66 (159)
T cd01923 2 VRLHTN-----KGDLNLELHCDKAPKACENFIKLCKKG---YYDGTIFHRSIRNFMIQGGDPTG-------TGRGGESIW 66 (159)
T ss_pred EEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC---ccCCcEEEEEeCCcEEEecccCC-------CCCCCcccc
Confidence 456666 999999999999999999999999999 99999999999999999999853 34444 556
Q ss_pred cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcE
Q 020718 180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLV 259 (322)
Q Consensus 180 ~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~V 259 (322)
+..+.+|+... ..|+.+|+|+| ++.++++++|||||++++.++||++|+|
T Consensus 67 g~~~~~E~~~~-----~~h~~~G~v~m-------------------------a~~~~~s~~sqFfIt~~~~~~Ld~~~~v 116 (159)
T cd01923 67 GKPFKDEFKPN-----LSHDGRGVLSM-------------------------ANSGPNTNGSQFFITYRSCKHLDGKHTV 116 (159)
T ss_pred CCccCcccccC-----cCcCCCcEEEE-------------------------eeCCCCCcccEEEEECCCCcccCCCccE
Confidence 66676664321 12556677766 3567899999999999999999999999
Q ss_pred EEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 260 VGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 260 FGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
||||++|||+|++|++++++++ ++|..+|+|.+|++++
T Consensus 117 FG~V~~G~~vl~~I~~~~~~~~-------------------------~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 117 FGRVVGGLETLEAMENVPDPGT-------------------------DRPKEEIKIEDTSVFV 154 (159)
T ss_pred EEEEEcCHHHHHHHHcCCCCCC-------------------------CCCCCCeEEEEeEEEe
Confidence 9999999999999999998765 8999999999999974
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7e-40 Score=283.36 Aligned_cols=149 Identities=21% Similarity=0.429 Sum_probs=126.5
Q ss_pred EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE 179 (322)
Q Consensus 101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~ 179 (322)
|.|+++ .|+|+||||.+.||+||+||++||+++ +|+|+.|||++++|++||||+.. ++.|+ +++
T Consensus 3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~rv~~~f~iq~Gd~~~-------~g~g~~~~~ 67 (153)
T cd01928 3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG---YYNGCIFHRNIKGFMVQTGDPTG-------TGKGGESIW 67 (153)
T ss_pred EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC---ccCCcEEEEeCCCCEEEccccCC-------CCCCCCccC
Confidence 566666 999999999999999999999999999 99999999999999999999853 34444 556
Q ss_pred cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcE
Q 020718 180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLV 259 (322)
Q Consensus 180 ~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~V 259 (322)
+..+.+|+... ..|+.+|+|+| ++.++++++|||||++++.++||++|+|
T Consensus 68 ~~~~~~e~~~~-----~~~~~~G~v~m-------------------------a~~~~~~~~SqFfI~~~~~~~Ld~~~tv 117 (153)
T cd01928 68 GKKFEDEFRET-----LKHDSRGVVSM-------------------------ANNGPNTNGSQFFITYAKQPHLDGKYTV 117 (153)
T ss_pred CCccccccccC-----CCcCCCcEEEE-------------------------eeCCCCCcccEEEEEeCCCcccCCCceE
Confidence 66666665321 12456666666 3456889999999999999999999999
Q ss_pred EEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718 260 VGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319 (322)
Q Consensus 260 FGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG 319 (322)
||||++|||+|++|++++++++ ++|..+|+|.+|-
T Consensus 118 FG~V~~G~dvl~~I~~~~~~~~-------------------------~~P~~~i~I~~~~ 152 (153)
T cd01928 118 FGKVIDGFETLDTLEKLPVDKK-------------------------YRPLEEIRIKDVT 152 (153)
T ss_pred EEEEEeCHHHHHHHHcCCCCCC-------------------------CCCcCCeEEEEeE
Confidence 9999999999999999999776 8999999999984
No 13
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.2e-39 Score=289.45 Aligned_cols=158 Identities=27% Similarity=0.417 Sum_probs=126.9
Q ss_pred CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718 97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS 176 (322)
Q Consensus 97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg 176 (322)
.+.+|.|+++ .|+|+||||.+.||+||+||++||+.+ ||||+.|||++++|++||||+... .++
T Consensus 27 ~~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Ydg~~FhRvi~~f~iQgG~~~~~--------~~~ 90 (190)
T PRK10903 27 GDPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG---FYNNTTFHRVIPGFMIQGGGFTEQ--------MQQ 90 (190)
T ss_pred CCcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC---CcCCcEEEEEeCCceEEeCCcCCC--------CCC
Confidence 3556888887 999999999999999999999999999 999999999999999999987532 111
Q ss_pred CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccc-cCCCCCcceEEEEcCCCCCCCC
Q 020718 177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEE-VGKDPNGTEFVIVTKDSPELDA 255 (322)
Q Consensus 177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an-~~p~s~gSqFfItl~~~p~LDg 255 (322)
..++..+.+|+. .++++.+|+|+| ++ .++|+|+|||||++++.++||+
T Consensus 91 ~~~~~~~~~e~~------~~l~~~~G~lam-------------------------a~~~~~~sn~SQFfIt~~~~~~ld~ 139 (190)
T PRK10903 91 KKPNPPIKNEAD------NGLRNTRGTIAM-------------------------ARTADKDSATSQFFINVADNAFLDH 139 (190)
T ss_pred CCCCCcccCccc------ccCcCCCcEEEe-------------------------CCCCCCCCcccEEEEECcCcccccC
Confidence 222344555432 234566677766 23 2489999999999999999984
Q ss_pred -----CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 256 -----SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 256 -----~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
+|+|||+|++|||||++|++++++++. ...++|.++|+|.+|+++.
T Consensus 140 ~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~---------------------~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 140 GQRDFGYAVFGKVVKGMDVADKISQVPTHDVG---------------------PYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred CccCCCccEEEEEecCHHHHHHHHcCCCCCCC---------------------CCCCcccCCeEEEEEEEeC
Confidence 899999999999999999999997521 0016999999999999873
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.8e-39 Score=279.38 Aligned_cols=142 Identities=26% Similarity=0.496 Sum_probs=121.0
Q ss_pred eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCccccchhhhcc
Q 020718 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLETERLMEEWKA 189 (322)
Q Consensus 111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~~~~~~E~~~ 189 (322)
..|+|+||||.+.||+||+||++||+.+ +|+|+.||||++||++||||+.. ++.|+ ++++..+++|+..
T Consensus 5 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~Rvi~~f~iq~Gd~~~-------~g~g~~~~~~~~~~~e~~~ 74 (148)
T cd01927 5 TKGDIHIRLFPEEAPKTVENFTTHARNG---YYNNTIFHRVIKGFMIQTGDPTG-------DGTGGESIWGKEFEDEFSP 74 (148)
T ss_pred ccccEEEEEeCCCCcHHHHHHHHHhhcC---CcCCcEEEEEcCCcEEEecccCC-------CCCCCCcccCCcccccccc
Confidence 3999999999999999999999999999 99999999999999999999852 44554 5666667666532
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHH
Q 020718 190 NNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV 269 (322)
Q Consensus 190 ~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdv 269 (322)
. ..|+.+|+|+| ++.++++++|||||++++.++||++|+|||||++|||+
T Consensus 75 ~-----~~h~~~G~l~m-------------------------a~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dv 124 (148)
T cd01927 75 S-----LKHDRPYTLSM-------------------------ANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDV 124 (148)
T ss_pred c-----cCcCCCeEEEE-------------------------eeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHH
Confidence 1 12444566665 45679999999999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718 270 AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN 317 (322)
Q Consensus 270 l~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~ 317 (322)
|++|++++++++ ++|.++|+|.+
T Consensus 125 l~~I~~~~~~~~-------------------------~~P~~~i~I~~ 147 (148)
T cd01927 125 VQRIENVKTDKN-------------------------DRPYEDIKIIN 147 (148)
T ss_pred HHHHHcCCCCCC-------------------------CCCcCCeEEEe
Confidence 999999999876 89999999975
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.9e-39 Score=281.54 Aligned_cols=147 Identities=23% Similarity=0.391 Sum_probs=119.2
Q ss_pred eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCcc-------cc
Q 020718 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLET-------ER 182 (322)
Q Consensus 111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~-------~~ 182 (322)
..|+|+||||.+.||+||+||++||+++ +|+|+.||||+++|+|||||+.. ++.++ ++++ ..
T Consensus 5 s~G~i~ieL~~~~aP~t~~nF~~L~~~~---~Y~g~~fhrvi~~f~iQgGd~~~-------~g~~~~~~~~~~~~~~~~~ 74 (166)
T cd01921 5 TLGDLVIDLFTDECPLACLNFLKLCKLK---YYNFCLFYNVQKDFIAQTGDPTG-------TGAGGESIYSQLYGRQARF 74 (166)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhcC---CcCCCEEEEEeCCceEEECCcCC-------CCCCCcccccccccccCcc
Confidence 3999999999999999999999999999 99999999999999999999863 23333 2222 11
Q ss_pred chhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCC-CCCCCCCCcEEE
Q 020718 183 LMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKD-SPELDASSLVVG 261 (322)
Q Consensus 183 ~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~-~p~LDg~~~VFG 261 (322)
+.+|+. ....|+.+|+|+| ++.++++++|||||++.+ .++||++|+|||
T Consensus 75 ~~~e~~-----~~~~h~~~G~l~m-------------------------a~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG 124 (166)
T cd01921 75 FEPEIL-----PLLKHSKKGTVSM-------------------------VNAGDNLNGSQFYITLGENLDYLDGKHTVFG 124 (166)
T ss_pred cCcccC-----CccccCCceEEEE-------------------------eECCCCCccceEEEEcCCCCcccCCCccEEE
Confidence 222221 0112445565555 345688899999999976 799999999999
Q ss_pred EEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 262 rVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
||++|||||++|++++++.+ ++|.++|+|.+|++|.
T Consensus 125 ~Vi~G~dvv~~I~~~~~~~~-------------------------~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 125 QVVEGFDVLEKINDAIVDDD-------------------------GRPLKDIRIKHTHILD 160 (166)
T ss_pred EEEcCHHHHHHHHcCCCCCC-------------------------CCCCCCeEEEEEEEEC
Confidence 99999999999999999876 8999999999999974
No 16
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=9.7e-39 Score=274.23 Aligned_cols=141 Identities=26% Similarity=0.472 Sum_probs=119.2
Q ss_pred eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCccccchhhhcc
Q 020718 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLETERLMEEWKA 189 (322)
Q Consensus 111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~~~~~~E~~~ 189 (322)
..|+|+||||.+.||+||+||++||+++ +|+++.||||+++|++||||+.. ++.++ ++++..+.+|+..
T Consensus 5 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~Rvi~~f~iq~Gd~~~-------~g~~~~~~~~~~~~~e~~~ 74 (146)
T cd01922 5 TMGEITLELYWNHAPKTCKNFYELAKRG---YYNGTIFHRLIKDFMIQGGDPTG-------TGRGGASIYGKKFEDEIHP 74 (146)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhcC---CcCCcEEEEEcCCcEEEecccCC-------CCCCcccccCCCccccccc
Confidence 4999999999999999999999999999 99999999999999999999853 34443 5566666666432
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHH
Q 020718 190 NNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV 269 (322)
Q Consensus 190 ~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdv 269 (322)
. ..|+.+|+|+| ++.++++++|||||++++.|+||++|+|||||++||||
T Consensus 75 ~-----~~h~~~G~l~m-------------------------a~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dv 124 (146)
T cd01922 75 E-----LKHTGAGILSM-------------------------ANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKV 124 (146)
T ss_pred C-----cCCCCCeEEEE-------------------------eeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHH
Confidence 1 12445666666 35669999999999999999999999999999999999
Q ss_pred HHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718 270 AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN 317 (322)
Q Consensus 270 l~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~ 317 (322)
|++|++++++ + ++|..+|+|.+
T Consensus 125 l~~I~~~~~~-~-------------------------~~P~~~I~I~~ 146 (146)
T cd01922 125 IENMVEVQTQ-T-------------------------DRPIDEVKILK 146 (146)
T ss_pred HHHHHhCCCC-C-------------------------CCcCCCeEEeC
Confidence 9999999997 3 79999999963
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8.7e-38 Score=274.92 Aligned_cols=156 Identities=26% Similarity=0.456 Sum_probs=132.8
Q ss_pred CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718 97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS 176 (322)
Q Consensus 97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg 176 (322)
.+.+|.|+++ .|+|+||||.+.+|+||+||++||+.+ +|+|+.||||+++|++||||+.. ++.|+
T Consensus 4 ~~~~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~---~Y~~~~f~Rvi~~f~iQgGd~~~-------~g~g~ 68 (171)
T cd01925 4 TTGKVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG---YYDNTIFHRVVPGFIIQGGDPTG-------TGTGG 68 (171)
T ss_pred cccEEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC---CCCCCEEEEEcCCcEEEccccCC-------CCccC
Confidence 3567889888 999999999999999999999999999 99999999999999999999853 45555
Q ss_pred -CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC
Q 020718 177 -NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA 255 (322)
Q Consensus 177 -~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg 255 (322)
++++..+.+|.... ..++.+|+|+| ++.++++++|||||++++.++||+
T Consensus 69 ~s~~g~~~~~E~~~~-----~~~~~~G~l~m-------------------------a~~g~~s~~sqFfIt~~~~~~ldg 118 (171)
T cd01925 69 ESIYGEPFKDEFHSR-----LRFNRRGLVGM-------------------------ANAGDDSNGSQFFFTLDKADELNN 118 (171)
T ss_pred cccCCCccCcccccC-----cCCCCCcEEEE-------------------------CcCCCCCcccEEEEEcCCCcccCC
Confidence 56666666664321 12566777776 456688999999999999999999
Q ss_pred CCcEEEEEE-cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 256 SSLVVGRVL-EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 256 ~~~VFGrVi-~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
+|+|||||+ ++|++|++|++++++++ ++|.++|+|.+|++++
T Consensus 119 ~~tvFG~V~g~~~~~v~~i~~~~~~~~-------------------------~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 119 KHTLFGKVTGDTIYNLLKLAEVETDKD-------------------------ERPVYPPKITSVEVLE 161 (171)
T ss_pred CceEEEEEEECcHHHHHHHhcCCcCCC-------------------------CCcCCCeEEEEEEEEc
Confidence 999999999 46888999999999876 7999999999999874
No 18
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=4.4e-37 Score=268.75 Aligned_cols=154 Identities=25% Similarity=0.370 Sum_probs=120.3
Q ss_pred EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCcc
Q 020718 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLET 180 (322)
Q Consensus 101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~ 180 (322)
|.|+++ .|+|+|+||.+.||+||+||++||+.+ ||+|+.||||+++|+|||||+..+ .+...++
T Consensus 2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Yd~~~fhRvi~~f~iQgGd~~~~--------~~~~~~~ 65 (164)
T PRK10791 2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG---FYNNTIFHRVINGFMIQGGGFEPG--------MKQKATK 65 (164)
T ss_pred EEEEEc-----cccEEEEEeCCCCcHHHHHHHHHHhcC---CcCCcEEEEEecCcEEEeCCcCCC--------CCcCCCC
Confidence 445665 999999999999999999999999999 999999999999999999987532 2211122
Q ss_pred ccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeecccc-CCCCCcceEEEEcCCCCCCC-----
Q 020718 181 ERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEV-GKDPNGTEFVIVTKDSPELD----- 254 (322)
Q Consensus 181 ~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~-~p~s~gSqFfItl~~~p~LD----- 254 (322)
..+.+|.. ..+++.+|+|+| ++. ++++++|||||++.+.++||
T Consensus 66 ~~~~~e~~------~~~~~~~G~lsm-------------------------a~~~~p~s~~SQFfI~~~~~~~ld~~~~~ 114 (164)
T PRK10791 66 EPIKNEAN------NGLKNTRGTLAM-------------------------ARTQAPHSATAQFFINVVDNDFLNFSGES 114 (164)
T ss_pred CCcCCccc------ccccCCCcEEEE-------------------------CCCCCcCCccceEEEEecCchhhcccccc
Confidence 34444421 123455666666 333 48999999999999988776
Q ss_pred --C-CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 255 --A-SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 255 --g-~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
+ +|+|||||++|||||++|++++++.... -.++|..+|+|.+|.+.|
T Consensus 115 ~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~---------------------~~~~P~~~v~I~~~~i~~ 164 (164)
T PRK10791 115 LQGWGYCVFAEVVEGMDVVDKIKGVATGRSGM---------------------HQDVPKEDVIIESVTVSE 164 (164)
T ss_pred cCCCCccEEEEEecCHHHHHHHHcCcCCCCCc---------------------cCCCcCCCeEEEEEEEeC
Confidence 3 7999999999999999999999875200 006999999999998865
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-37 Score=294.81 Aligned_cols=153 Identities=27% Similarity=0.461 Sum_probs=136.1
Q ss_pred CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718 97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS 176 (322)
Q Consensus 97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg 176 (322)
....+.+.++ +|+|.|.||++.+|+||+||-..|+.| ||||..|||||+|||||+|||.. +|+||
T Consensus 403 l~~~aiihtt-----~gdi~~kl~p~ecpktvenf~th~rng---yy~~~~fhriik~fmiqtgdp~g-------~gtgg 467 (558)
T KOG0882|consen 403 LGKAAIIHTT-----QGDIHIKLYPEECPKTVENFTTHSRNG---YYDNHTFHRIIKGFMIQTGDPLG-------DGTGG 467 (558)
T ss_pred cccceEEEec-----ccceEEEecccccchhhhhhhccccCc---cccCcchHHhhhhheeecCCCCC-------CCCCC
Confidence 3455667776 999999999999999999999999999 99999999999999999999983 78988
Q ss_pred -CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC
Q 020718 177 -NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA 255 (322)
Q Consensus 177 -~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg 255 (322)
+++|..|.|||..... |..+-+|+| +|.|+|+||||||||+.+.|||||
T Consensus 468 esiwg~dfedefh~~lr-----hdrpft~sm-------------------------anag~ntngsqffit~~~tpwld~ 517 (558)
T KOG0882|consen 468 ESIWGKDFEDEFHPNLR-----HDRPFTVSM-------------------------ANAGPNTNGSQFFITTVPTPWLDG 517 (558)
T ss_pred cccccccchhhcCcccc-----cCCCceEEe-------------------------cccCCCCCCceEEEEecCccccCC
Confidence 9999999999864321 444445555 789999999999999999999999
Q ss_pred CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718 256 SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319 (322)
Q Consensus 256 ~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG 319 (322)
+|+|||||+.|||||++|+++.|++. +||+.+|.|.+--
T Consensus 518 khtvfgrv~~gm~vvqri~~v~t~k~-------------------------drp~e~v~iinis 556 (558)
T KOG0882|consen 518 KHTVFGRVTAGMDVVQRIEQVKTDKY-------------------------DRPYEDVKIINIS 556 (558)
T ss_pred cceeEEEEecchhHHhHhhhcccCcC-------------------------CCCCCceeEEEEe
Confidence 99999999999999999999999886 8999999998754
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.5e-35 Score=256.79 Aligned_cols=145 Identities=28% Similarity=0.424 Sum_probs=113.8
Q ss_pred eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccC
Q 020718 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKAN 190 (322)
Q Consensus 111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~ 190 (322)
..|+|+||||.+.||+||+||++||+.+ ||+|+.||||+++|++||||+.... ++..++..+.+|..
T Consensus 5 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Yd~~~fhRvi~~f~iQ~Gd~~~~~--------~~~~~~~~~~~e~~-- 71 (155)
T cd01920 5 SLGDIVVELYDDKAPITVENFLAYVRKG---FYDNTIFHRVISGFVIQGGGFTPDL--------AQKETLKPIKNEAG-- 71 (155)
T ss_pred cceeEEEEEeCCCCcHHHHHHHHHHhcC---CCCCCEEEEEeCCcEEEeCCCCCCC--------CccccCCcccCccc--
Confidence 4999999999999999999999999999 9999999999999999999986321 11112233433321
Q ss_pred CCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC-----CCcEEEEEEc
Q 020718 191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA-----SSLVVGRVLE 265 (322)
Q Consensus 191 ~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg-----~~~VFGrVi~ 265 (322)
..+++.+|+|+| |+. .++++++|||||++++.++||+ +|+|||+|++
T Consensus 72 ----~~~~~~~G~v~m-----------------------a~~-~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~e 123 (155)
T cd01920 72 ----NGLSNTRGTIAM-----------------------ART-NAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTE 123 (155)
T ss_pred ----ccccCCceEEEE-----------------------CCC-CCCCCccceEEEECCCchhcCCcccCCCccEEEEEec
Confidence 123566666666 221 2489999999999999999995 7999999999
Q ss_pred CHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718 266 GMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN 317 (322)
Q Consensus 266 Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~ 317 (322)
|||||++|++++++... | ..++|..+|+|.+
T Consensus 124 G~dvl~~I~~~~~~~~~---~------------------~~~~p~~~v~i~~ 154 (155)
T cd01920 124 GMDVVDKIAGVETYSFG---S------------------YQDVPVQDVIIES 154 (155)
T ss_pred CHHHHHHHHcCCccCCC---C------------------cCCCcCCCeEEEE
Confidence 99999999999997631 0 0169999999975
No 21
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=286.83 Aligned_cols=157 Identities=20% Similarity=0.407 Sum_probs=139.1
Q ss_pred CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCC
Q 020718 96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSG 175 (322)
Q Consensus 96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~g 175 (322)
.+..+-|+.+. +..|.+-|||+.|.+|++|+||++||+.| ||+|+.|||.|.+||||||||+. +|.|
T Consensus 273 rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g---YYnnt~FHRsIrnFmiQGGDPTG-------TG~G 339 (518)
T KOG0883|consen 273 RVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG---YYNNTIFHRSIRNFMIQGGDPTG-------TGRG 339 (518)
T ss_pred cccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc---cccchHHHHHHHHHeeeCCCCCC-------CCCC
Confidence 34455566555 55999999999999999999999999999 99999999999999999999973 7778
Q ss_pred C-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCC
Q 020718 176 S-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELD 254 (322)
Q Consensus 176 g-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LD 254 (322)
| +++|..|.|||.... .|.-||+|+| +|+|+|+|||||||++..+-|||
T Consensus 340 GeSiWgKpFkDEf~~~l-----~H~gRGvlSM-------------------------ANsGpnTNgSQFFItyrsckhLd 389 (518)
T KOG0883|consen 340 GESIWGKPFKDEFCSNL-----SHDGRGVLSM-------------------------ANSGPNTNGSQFFITYRSCKHLD 389 (518)
T ss_pred CccccCCccccccCCCC-----CcCCcceEee-------------------------ccCCCCCCCceEEEEecchhhcc
Confidence 7 999999999985432 2556666666 79999999999999999999999
Q ss_pred CCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718 255 ASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL 320 (322)
Q Consensus 255 g~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~ 320 (322)
++|++|||||-|+|+|.+|+.+++++. ++|..+|+|.+.-|
T Consensus 390 ~KHTIFGrvVGGldtL~amEnve~d~~-------------------------DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 390 NKHTIFGRVVGGLDTLTAMENVETDEK-------------------------DRPKEEIKIEDAIV 430 (518)
T ss_pred ccceeeeeeeccHHHHHHHhcCCCCCC-------------------------CCcccceEEeeeEE
Confidence 999999999999999999999999997 79999999998765
No 22
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-36 Score=244.15 Aligned_cols=143 Identities=21% Similarity=0.443 Sum_probs=131.5
Q ss_pred eeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCccccchhhhccC
Q 020718 112 AGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLETERLMEEWKAN 190 (322)
Q Consensus 112 ~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~~~~~~E~~~~ 190 (322)
.|+|.||||.+.+|++|+||+.||... ||+|+.|||-++||++|+||+.. .|.|| +++|..|.+||...
T Consensus 9 ~gdikiev~~e~tpktce~~l~~~~~~---~~n~~~~~~~~~~f~v~~~~~~~-------tgrgg~siwg~~fede~~~~ 78 (161)
T KOG0884|consen 9 VGDIKIEVFCERTPKTCENFLALCASD---YYNGCIFHRNIKGFMVQTGDPTH-------TGRGGNSIWGKKFEDEYSEY 78 (161)
T ss_pred cCcEEEEEEecCChhHHHHHHHHhhhh---hccceeecCCCCCcEEEeCCCCC-------CCCCCccccCCcchHHHHHH
Confidence 899999999999999999999999999 99999999999999999999974 56776 99999999999765
Q ss_pred CCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHH
Q 020718 191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVA 270 (322)
Q Consensus 191 ~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl 270 (322)
.. |+.||+|+| +|.+||+|+||||||++..+|||=+|+|||+||+|+|.|
T Consensus 79 lk-----h~~rg~vsm-------------------------anngp~tn~sqffity~kq~hldmkytvfgkvidg~etl 128 (161)
T KOG0884|consen 79 LK-----HNVRGVVSM-------------------------ANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128 (161)
T ss_pred Hh-----hccceeEEc-------------------------ccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhH
Confidence 43 788888888 789999999999999999999999999999999999999
Q ss_pred HHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeee
Q 020718 271 EKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNC 318 (322)
Q Consensus 271 ~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~c 318 (322)
+.|+.+++++.. .||+.++.|.+-
T Consensus 129 dele~l~v~~kt------------------------yrpl~~~~ik~i 152 (161)
T KOG0884|consen 129 DELEKLPVNEKT------------------------YRPLNDVHIKDI 152 (161)
T ss_pred HHHhhcccCccc------------------------cccchheeeeee
Confidence 999999998864 789888888764
No 23
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.4e-35 Score=253.05 Aligned_cols=155 Identities=34% Similarity=0.584 Sum_probs=123.3
Q ss_pred EEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccc
Q 020718 102 FLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETE 181 (322)
Q Consensus 102 ~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~ 181 (322)
||+|++++ .|+|+||||.+.||++|+||++||+.+ +|+|+.|||+++++++|+|++...... +......+.
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~---~y~g~~f~ri~~~~~i~~G~~~~~~~~----~~~~~~~~~ 71 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG---FYDGTKFHRIIPNFVIQGGDPTGNGGY----GREDSTGGE 71 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT---SSTTEBEEEEETTTEEEESSTTTSSSS----TSEEBTTBS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc---ccCCceeecccccceeeeeeccCCCCc----ccccccCcc
Confidence 78888766 999999999999999999999999999 999999999999999999997643110 000011122
Q ss_pred cchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEE
Q 020718 182 RLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVG 261 (322)
Q Consensus 182 ~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFG 261 (322)
.+++|+... .+.+.+|+|+|. +...++++++|||||++.+.++||++|+|||
T Consensus 72 ~~~~E~~~~-----~~~~~~G~v~~~-----------------------~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG 123 (155)
T PF00160_consen 72 PIPDEFNPS-----LLKHRRGLVSMA-----------------------RSGKDPNSNGSQFFITLSDAPHLDGKYTVFG 123 (155)
T ss_dssp CBSSSGBTT-----SSSSSTTEEEEE-----------------------BSSSSTTEBSSEEEEESSCGGGGTTTSEEEE
T ss_pred ccccccccc-----cccccceeeeec-----------------------ccccCCCCCCceEEeeccCCCccccceeeee
Confidence 355554211 234566776662 2223478899999999999999999999999
Q ss_pred EEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718 262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL 320 (322)
Q Consensus 262 rVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~ 320 (322)
+|++|||+|++|++++++ ++|.++|+|.+|||
T Consensus 124 ~V~~G~~vl~~i~~~~~~---------------------------~~p~~~v~I~~cgv 155 (155)
T PF00160_consen 124 RVIEGMDVLDKIEAGPTD---------------------------ERPKQDVTISSCGV 155 (155)
T ss_dssp EEEEHHHHHHHHHTSBBT---------------------------TEBSSTEEEEEEEE
T ss_pred EEehhHHHHHHHHCCCCC---------------------------CccCCCeEEEEeEC
Confidence 999999999999998775 38999999999997
No 24
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-36 Score=260.19 Aligned_cols=162 Identities=29% Similarity=0.587 Sum_probs=146.0
Q ss_pred CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEe---ccCeeEeeCccccCcccccccC
Q 020718 97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKI---MPNYVQHGGVRSYGVDAELARR 173 (322)
Q Consensus 97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rv---i~gfviQgGd~~~~~~~~~~~g 173 (322)
.+++||||++++++++||++++|+.|..|+|++||..||++.+++.|++..|||+ +++||+||||++.. ++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~h------ng 75 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCH------NG 75 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCccccc------CC
Confidence 3679999999999999999999999999999999999999999999999999993 44799999999765 78
Q ss_pred CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718 174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE 252 (322)
Q Consensus 174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~ 252 (322)
+|+ ++|+++|++|.+..+|..| |.++| +|.+||+|||||||++....|
T Consensus 76 tggkSiy~ekF~DenFilkhtgp------GiLSm-------------------------aNagpntngsqffictaktew 124 (167)
T KOG0865|consen 76 TGGKSIYGEKFDDENFILKHTGP------GILSM-------------------------ANAGPNTNGSQFFICTAKTEW 124 (167)
T ss_pred ccceEecccccCCcCcEEecCCC------Ceeeh-------------------------hhcCCCccccEEEEEcccccc
Confidence 888 8999999999888776432 44444 789999999999999999999
Q ss_pred CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718 253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321 (322)
Q Consensus 253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l 321 (322)
||++|+|||+|.+||+++++++...... +++.++|+|.+||.|
T Consensus 125 LdgkhVVfGkv~eGm~iv~a~e~~gs~~--------------------------gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 125 LDGKHVVFGKVKEGMDIVEAMERFGSRN--------------------------GKTSKKITIADCGQL 167 (167)
T ss_pred ccCceeEcCceEcccchhhhhhccCCcC--------------------------CcccccEEEecCCcC
Confidence 9999999999999999999999977655 899999999999986
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.3e-34 Score=247.20 Aligned_cols=141 Identities=33% Similarity=0.560 Sum_probs=118.1
Q ss_pred eeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCC
Q 020718 112 AGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANN 191 (322)
Q Consensus 112 ~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~ 191 (322)
.|+|+||||.+.+|++|+||++||+++ +|+|+.|||++++|++|+||+... ..+++.++..+++|.....
T Consensus 6 ~G~i~IeL~~~~~P~~~~nF~~l~~~~---~Y~~~~f~rv~~~~~iq~Gd~~~~-------~~~~~~~~~~~~~E~~~~~ 75 (146)
T cd00317 6 KGRIVIELYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGT-------GGGGSGPGYKFPDENFPLK 75 (146)
T ss_pred cCcEEEEEcCCCChHHHHHHHHHHhcC---CcCCCEEEEEeCCCeEEECCCCCC-------CCCCCcCCCccCCccccCc
Confidence 899999999999999999999999999 999999999999999999998643 1111233455665543322
Q ss_pred CCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHH
Q 020718 192 ERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271 (322)
Q Consensus 192 ~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~ 271 (322)
.++.+|+|+| ++.++++++|||||++.+.++||++|+|||||++|||+|+
T Consensus 76 -----~~~~~G~v~~-------------------------~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~ 125 (146)
T cd00317 76 -----YHHRRGTLSM-------------------------ANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVD 125 (146)
T ss_pred -----CcCCCcEEEE-------------------------eeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHH
Confidence 1566777777 3345778899999999999999999999999999999999
Q ss_pred HHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718 272 KIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN 317 (322)
Q Consensus 272 ~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~ 317 (322)
+|++.+++++ ++|.++|+|.+
T Consensus 126 ~I~~~~~~~~-------------------------~~P~~~i~I~~ 146 (146)
T cd00317 126 KIERGDTDEN-------------------------GRPIKPVTISD 146 (146)
T ss_pred HHHcCCCCCC-------------------------CcCcCceEEeC
Confidence 9999999876 89999999974
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.1e-33 Score=245.69 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=103.4
Q ss_pred eeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhcc
Q 020718 110 KSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKA 189 (322)
Q Consensus 110 ~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~ 189 (322)
+..|+|+||||++.||+||+||++||+.+ ||+++.||||+++||+||||+............+.. ..++.|+..
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~---~~~p~e~~~ 77 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVERG---FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKS---RTIPLEIKP 77 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhC---CcCCCEEEEecCCcEEEecCCCCCCCCccccccccc---ccccceecc
Confidence 46999999999999999999999999999 999999999999999999998642110000000000 111222111
Q ss_pred CCCCCCCCCCCCCc-eeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcC-------CCCCCCCCCcEEE
Q 020718 190 NNERCPGTKNLAGT-VGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTK-------DSPELDASSLVVG 261 (322)
Q Consensus 190 ~~~~~~g~~~~~G~-v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~-------~~p~LDg~~~VFG 261 (322)
.....+ ..|. +..+..+ .....++++++|.|+|++....+|+++|||||+++ ..++||++|+|||
T Consensus 78 ~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG 150 (176)
T cd01924 78 EGQKQP----VYGKTLEEAGRY---DEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFG 150 (176)
T ss_pred cCCCCC----ccCccccccccc---ccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEE
Confidence 100000 0000 0000000 11122445677777776544447999999999998 7899999999999
Q ss_pred EEEcCHHHHHHHhcC
Q 020718 262 RVLEGMEVAEKIGEV 276 (322)
Q Consensus 262 rVi~Gmdvl~~I~~~ 276 (322)
||++|||||++|+..
T Consensus 151 ~VveG~dvl~~I~~g 165 (176)
T cd01924 151 YVTDGLDILRELKVG 165 (176)
T ss_pred EEecCHHHHHhhcCC
Confidence 999999999999764
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-32 Score=258.01 Aligned_cols=158 Identities=24% Similarity=0.469 Sum_probs=140.1
Q ss_pred CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718 94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR 173 (322)
Q Consensus 94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g 173 (322)
.+..+.+|.+.++ .|+|.|||++..||++|.||++||..| ||+|+.|||++|||++|||||+ ++|
T Consensus 8 EP~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg---yy~nt~fhrlvp~f~~Qggdp~-------~~g 72 (439)
T KOG0885|consen 8 EPPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG---YYDNTEFHRLVPGFLVQGGDPT-------GTG 72 (439)
T ss_pred CCCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc---cccCceeeeeccchhcccCCCC-------CCC
Confidence 4556889999999 999999999999999999999999999 9999999999999999999997 378
Q ss_pred CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718 174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE 252 (322)
Q Consensus 174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~ 252 (322)
+|| +|||..|.+|+..... .+.+|+||| +|.+.+.|||||||||+++++
T Consensus 73 tGgesiyg~~fadE~h~Rlr-----f~rrGlvgm-------------------------ana~~~~ngsqFfftl~~~~e 122 (439)
T KOG0885|consen 73 TGGESIYGRPFADEFHPRLR-----FNRRGLVGM-------------------------ANAGNDDNGSQFFFTLGDTPE 122 (439)
T ss_pred CCccccccccchhhcCccee-----eeccceeee-------------------------cccCCCCCCceEEEEecCChH
Confidence 888 9999999999864322 456777777 566678999999999999999
Q ss_pred CCCCCcEEEEEE-cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718 253 LDASSLVVGRVL-EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321 (322)
Q Consensus 253 LDg~~~VFGrVi-~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l 321 (322)
||++|++||+|+ +-+-.+.+|..+.++.+ .||...-.|.+|.|+
T Consensus 123 l~nk~tiFGKVtGdtIYn~lri~e~eida~-------------------------~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 123 LNNKHTIFGKVTGDTIYNMLRISEVEIDAD-------------------------DRPVDPPKIKSVEVL 167 (439)
T ss_pred hcccCceeeeecchhhhhhhhhcccccccc-------------------------cCCCCccceeeeEee
Confidence 999999999999 56778899999999876 799999999999886
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-30 Score=241.01 Aligned_cols=157 Identities=22% Similarity=0.337 Sum_probs=130.5
Q ss_pred EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE 179 (322)
Q Consensus 101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~ 179 (322)
|.++++ +|+|||.||-+..|.+|.||++||+-. ||+.+.||-|..+|++|.|||+. +|.|| ++|
T Consensus 3 VlieTt-----lGDlvIDLf~~erP~~clNFLKLCk~K---YYN~clfh~vq~~f~aQTGDPtG-------tG~GG~si~ 67 (479)
T KOG0415|consen 3 VLIETT-----LGDLVIDLFVKERPRTCLNFLKLCKIK---YYNFCLFHTVQRDFTAQTGDPTG-------TGDGGESIY 67 (479)
T ss_pred EEEEee-----cccEEeeeecccCcHHHHHHHHHHhHh---hcccceeeeccccceeecCCCCC-------CCCCcceee
Confidence 677777 999999999999999999999999999 99999999999999999999973 66666 666
Q ss_pred cccch--hhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC-CCCCCC
Q 020718 180 TERLM--EEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS-PELDAS 256 (322)
Q Consensus 180 ~~~~~--~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~-p~LDg~ 256 (322)
+.-+. ..|+.........|+..|+|+| .+.|.|.+||||||||++. .+|||+
T Consensus 68 ~~lyG~q~rffeaE~~p~l~Hsk~G~vsm-------------------------vs~g~n~~gSQF~iTlgenLdyLDg~ 122 (479)
T KOG0415|consen 68 GVLYGEQARFFEAEFLPKLKHSKMGTVSM-------------------------VSAGENLNGSQFFITLGENLDYLDGK 122 (479)
T ss_pred eecccccchhhhhhhcccccccccceEEe-------------------------ecCCcccccceEEEEccccccccccc
Confidence 54331 1122211111224667788887 4677889999999999985 799999
Q ss_pred CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718 257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322 (322)
Q Consensus 257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~ 322 (322)
|+|||+|.+|||+|.+|...-++.+ ++|+++|.|..--+|+
T Consensus 123 htvfGqV~EG~dtl~kiNea~vD~~-------------------------~rPykdIRI~HTiiLd 163 (479)
T KOG0415|consen 123 HTVFGQVAEGFDTLTKINEAIVDPK-------------------------NRPYKDIRIKHTIILD 163 (479)
T ss_pred cceeeehhhhHHHHHHHHHHhcCCC-------------------------CCcccceeeeeeEEec
Confidence 9999999999999999999999987 8999999999877764
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.002 Score=64.15 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=92.5
Q ss_pred eeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhh--hcc
Q 020718 112 AGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEE--WKA 189 (322)
Q Consensus 112 ~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E--~~~ 189 (322)
.--|.|+++..-.|.-++-|.++|..+ ++++..|.||...+++|.||.-.. ...+|.+ +.+..| |..
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~---~fkklH~sPV~~i~y~qa~Ds~vS------iD~~gmV--EyWs~e~~~qf 179 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQDG---YFKKLHFSPVKKIRYNQAGDSAVS------IDISGMV--EYWSAEGPFQF 179 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCccc---eecccccCceEEEEeeccccceee------cccccee--EeecCCCcccC
Confidence 348999999999999999999999999 999999999999999999986422 1122211 111111 110
Q ss_pred CCC-CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHH
Q 020718 190 NNE-RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGME 268 (322)
Q Consensus 190 ~~~-~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmd 268 (322)
... ..-.+++..-+++++ .......+-+|++.-...+-|..+..|||++.+|-+
T Consensus 180 Pr~~l~~~~K~eTdLy~f~-------------------------K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFP-------------------------KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccccccccccccchhhccc-------------------------ccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 000 000112222222221 111233467899998888889999999999999999
Q ss_pred HHHHHhcCccccC
Q 020718 269 VAEKIGEVKTVQE 281 (322)
Q Consensus 269 vl~~I~~~~t~~~ 281 (322)
+++.|....++..
T Consensus 235 lvqeiDE~~t~~~ 247 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQ 247 (558)
T ss_pred hhhhhhccchhhh
Confidence 9999999998875
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.61 E-value=0.14 Score=51.96 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=60.6
Q ss_pred eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCCC
Q 020718 113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNE 192 (322)
Q Consensus 113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~~ 192 (322)
=.+.+||.. .+|+.+++|+.+.+.| .++ +.+...-|+.-. .+.+...+.|+...+
T Consensus 201 Ty~evE~~~-~~p~s~EH~la~~~~G---~~~---Vd~~tsTfi~d~-----------------~L~g~~~p~En~~~R- 255 (503)
T TIGR03268 201 TYVEVELDP-NAPVSVEHFLALMEDG---TFR---VDYRTSTFISDD-----------------SLRGLDKPEENIEKR- 255 (503)
T ss_pred EEEEEEEcC-CCChhHHHHHHHHhCC---eEE---EeeeecceEecc-----------------cccCccCCccccCcc-
Confidence 356688866 6999999999999988 221 111111122110 111233444443322
Q ss_pred CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHH
Q 020718 193 RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272 (322)
Q Consensus 193 ~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~~ 272 (322)
.+|+|.+ .|.|.. .-.-||--.+-+ -.-.|+|+|+|+.|||+++-
T Consensus 256 -------~rGtVTV-------------------------Rn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~ 300 (503)
T TIGR03268 256 -------RRGAVTV-------------------------RNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDI 300 (503)
T ss_pred -------cceeEEE-------------------------EeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeec
Confidence 3566655 343332 335777666544 23479999999999999975
Q ss_pred HhcC
Q 020718 273 IGEV 276 (322)
Q Consensus 273 I~~~ 276 (322)
-+..
T Consensus 301 a~~G 304 (503)
T TIGR03268 301 AQEG 304 (503)
T ss_pred ccCC
Confidence 5543
No 31
>PRK00969 hypothetical protein; Provisional
Probab=94.39 E-value=0.16 Score=51.57 Aligned_cols=104 Identities=23% Similarity=0.297 Sum_probs=60.8
Q ss_pred eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCCC
Q 020718 113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNE 192 (322)
Q Consensus 113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~~ 192 (322)
=.+.+||.. .+|..+++|+.+.+.| .++ +.+...-|+.-. .+.|...+.|+...+
T Consensus 204 Ty~eve~~~-~~p~s~EH~la~~~~G---~f~---Vd~~tstfI~d~-----------------~L~g~~~p~En~~~R- 258 (508)
T PRK00969 204 TYVEVELDP-GAPKSVEHFLALLEDG---TFE---VDFETSTFIADD-----------------RLQGLKIPEENFEPR- 258 (508)
T ss_pred EEEEEEEcC-CCCchHHHHHHHHhCC---eEE---EeeeecceEeec-----------------cccCccCCccccCcc-
Confidence 356678887 6999999999999988 221 111111121110 111233444443322
Q ss_pred CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHH
Q 020718 193 RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272 (322)
Q Consensus 193 ~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~~ 272 (322)
.+|+|.+ .|.|.. .-.-||--.+-+ -.-.|+|+|+|+.|||+++-
T Consensus 259 -------~~GtVTV-------------------------Rt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~ 303 (508)
T PRK00969 259 -------RRGTVTV-------------------------RTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDF 303 (508)
T ss_pred -------ccceEEE-------------------------EeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeec
Confidence 4566665 343332 335788766644 23479999999999999975
Q ss_pred HhcC
Q 020718 273 IGEV 276 (322)
Q Consensus 273 I~~~ 276 (322)
-+..
T Consensus 304 a~~G 307 (508)
T PRK00969 304 AKEG 307 (508)
T ss_pred ccCC
Confidence 5543
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.25 E-value=0.31 Score=49.51 Aligned_cols=123 Identities=23% Similarity=0.347 Sum_probs=64.4
Q ss_pred eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCCC
Q 020718 113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNE 192 (322)
Q Consensus 113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~~ 192 (322)
--|.|+||.+.||+|+.-|+++.--... --=-..+|-..++.++.=|+..+ + ..+.+|+..+.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~-~VG~L~v~F~~~d~~mFk~~~~~----------~-----k~LiPEN~P~~- 437 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLKTK-PVGRLPVHFAFKEMIMFKGNKEL----------A-----KGLIPENTPED- 437 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCccc-ccceeEEEEEeCCeeEeccCchh----------c-----cccCCCCCCCC-
Confidence 3588999999999999999997643310 00123455555554333333321 1 22333332222
Q ss_pred CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC-CCCCCCCcEEEEEEcCHHHHH
Q 020718 193 RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS-PELDASSLVVGRVLEGMEVAE 271 (322)
Q Consensus 193 ~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~-p~LDg~~~VFGrVi~Gmdvl~ 271 (322)
.-.+|.+||-. ....+-|++.+ .-+.+++| ++. ..+++.+ ++|||+++||.|+
T Consensus 438 -----~V~ag~IgvTN----------~a~k~~G~IGV------Rl~d~def----GPTGE~F~gTN-IiG~Vv~~~e~Lk 491 (503)
T TIGR03268 438 -----KVEAGVIGVTN----------QACKHVGMIGV------RLEDSDEF----GPTGEPFSGTN-IIGRVVEGMERLK 491 (503)
T ss_pred -----ccccceEeeec----------hhhhcCceEEE------EccCCccc----CCCCCCccCcc-eEEEecCChhHhc
Confidence 22355565521 00012233222 00112232 332 3466655 5699999999999
Q ss_pred HHhcCcc
Q 020718 272 KIGEVKT 278 (322)
Q Consensus 272 ~I~~~~t 278 (322)
++....+
T Consensus 492 ~~KeGd~ 498 (503)
T TIGR03268 492 GLKEGDT 498 (503)
T ss_pred ccccCce
Confidence 9887543
No 33
>PRK00969 hypothetical protein; Provisional
Probab=92.77 E-value=0.73 Score=46.98 Aligned_cols=120 Identities=22% Similarity=0.320 Sum_probs=64.7
Q ss_pred eeEEEEecCCCCChhHHHHHHHhcCCCccccc--CcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccC
Q 020718 113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYR--RKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKAN 190 (322)
Q Consensus 113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~--g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~ 190 (322)
--|.||||.+.||+|+.-|+++.--. +.. -..+|-..++.++.=|+..+ . ..+.+|+..+
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tGL~---~~~VG~L~v~F~~~d~~lFk~~~~~----------~-----k~liPEN~P~ 439 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTGLK---TKPVGKLPVYFKYEDTYLFKGNIEY----------A-----KGLLPENTPE 439 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcCCc---ccccceeEEEEEeCCeEEEccChhh----------c-----cccCCCCCCC
Confidence 35889999999999999999986543 111 23455556664444444321 1 2233333322
Q ss_pred CCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC-CCCCCCCcEEEEEEcCHHH
Q 020718 191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS-PELDASSLVVGRVLEGMEV 269 (322)
Q Consensus 191 ~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~-p~LDg~~~VFGrVi~Gmdv 269 (322)
. .-.+|.+||-. ....+-|++.+ .-+.+.+| ++. ..+++.+ ++|||+ ++|-
T Consensus 440 ~------~V~ag~IgvTN----------~a~k~~G~iGV------R~~d~d~f----GPTGE~F~gTN-IIGrVv-~~e~ 491 (508)
T PRK00969 440 D------KVKAGEIGVTN----------MAAKYKGMIGV------RLSDNDEF----GPTGEPFEGTN-IIGRVV-NLEK 491 (508)
T ss_pred C------ccccceEeeec----------hhhhcCceEEE------EccCCccc----CCCCCCccCce-eEEEec-ChHH
Confidence 2 23455565521 00122233322 00112222 332 3456544 789999 9999
Q ss_pred HHHHhcCcc
Q 020718 270 AEKIGEVKT 278 (322)
Q Consensus 270 l~~I~~~~t 278 (322)
|+++....+
T Consensus 492 Lk~lKeGd~ 500 (508)
T PRK00969 492 LKKLKEGDT 500 (508)
T ss_pred hcccccCCe
Confidence 998887544
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.27 Score=48.54 Aligned_cols=102 Identities=26% Similarity=0.377 Sum_probs=59.6
Q ss_pred eeEEEEecCCCCChhHHHHHHHhcCCC-cccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCC
Q 020718 113 GRIVIGLYGDSAPAGAARFSSLVSGTA-GISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANN 191 (322)
Q Consensus 113 GrIvIeL~~d~aP~tv~nF~~L~~~~~-g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~ 191 (322)
-.+.+||.. .+|+.+++|++|.+.|. .+-|+-.+| +- |- ++.+++++.|+.+..
T Consensus 203 Ty~eve~s~-nsP~saEH~lalmedG~lri~~~tntf-------is---~~--------------~lq~~~~~~en~d~R 257 (512)
T COG4070 203 TYFEVELSR-NSPKSAEHFLALMEDGTLRIDVTTNTF-------IS---DD--------------TLQEEKVPEENFDLR 257 (512)
T ss_pred EEEEEEeCC-CCchhHHHHHHHhhcceEEEEEeccce-------ee---cc--------------ccccccCChhhhhhh
Confidence 456788888 69999999999999882 111222122 11 10 112244555555433
Q ss_pred CCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHH
Q 020718 192 ERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271 (322)
Q Consensus 192 ~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~ 271 (322)
.+|.+.+ .|.|-+ .-.-||--.+-+ ---.|.|+|||++|||+++
T Consensus 258 --------erG~iTv-------------------------Rn~Gvg--eGrvYIyRedR~-ss~sHnvVGrV~eGiELid 301 (512)
T COG4070 258 --------ERGAITV-------------------------RNVGVG--EGRVYIYREDRP-SSLSHNVVGRVIEGIELID 301 (512)
T ss_pred --------hcceEEE-------------------------Eeeecc--cceEEEEecCCC-CccccceeeeeecceEEEE
Confidence 3455544 233322 335677665533 2237899999999999987
Q ss_pred HHhc
Q 020718 272 KIGE 275 (322)
Q Consensus 272 ~I~~ 275 (322)
--..
T Consensus 302 ~a~e 305 (512)
T COG4070 302 LAEE 305 (512)
T ss_pred eccc
Confidence 5544
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.62 Score=46.14 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=27.7
Q ss_pred eEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccC
Q 020718 114 RIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154 (322)
Q Consensus 114 rIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~g 154 (322)
-|+||||.+.||+++..|+.+..-... ---..+.|-..++
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~k-pVGkL~Vhfay~d 416 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTK-PVGKLKVHFAYDD 416 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccccc-cccceEEEEEeCC
Confidence 589999999999999999997643310 0113455555555
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=80.88 E-value=9.2 Score=33.06 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=25.3
Q ss_pred eEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccC
Q 020718 114 RIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154 (322)
Q Consensus 114 rIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~g 154 (322)
.++.+|..|.||+||+-|.++- - |.+..+|-..-|
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L--P----~~~~~~HarwSG 43 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL--P----LKGKVIHARWSG 43 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSS
T ss_pred EEEEEEcccCChHHHHHHHHhC--C----CCCcEEEEEEEC
Confidence 4789999999999999999976 2 667777776666
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.95 E-value=30 Score=27.61 Aligned_cols=21 Identities=38% Similarity=0.143 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhc
Q 020718 46 SRRELTLCGNSSLLLLWGSLV 66 (322)
Q Consensus 46 ~rr~l~~~~~~~~l~~~~~~~ 66 (322)
|+..|+++.++++|||.++.+
T Consensus 3 SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 344444444444555544443
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=34.53 E-value=28 Score=28.79 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=23.5
Q ss_pred cceEEEEcCCCC-------CCCCCCcEEEEEEcCHHHHHHHhcC
Q 020718 240 GTEFVIVTKDSP-------ELDASSLVVGRVLEGMEVAEKIGEV 276 (322)
Q Consensus 240 gSqFfItl~~~p-------~LDg~~~VFGrVi~Gmdvl~~I~~~ 276 (322)
+.-|.|.+++.| .+-....++|||++|.+.++++...
T Consensus 71 g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~ 114 (120)
T PF04126_consen 71 GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGG 114 (120)
T ss_dssp CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TT
T ss_pred CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCC
Confidence 345888888875 3455689999999999888877653
Done!