Query 020721
Match_columns 322
No_of_seqs 246 out of 1355
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 6.6E-23 2.3E-27 190.1 16.4 197 73-294 12-238 (280)
2 1xhb_A Polypeptide N-acetylgal 93.2 1.6 5.5E-05 41.8 14.3 175 72-259 27-245 (472)
3 2d7i_A Polypeptide N-acetylgal 91.2 3 0.0001 41.3 13.9 173 73-259 111-325 (570)
4 1qg8_A Protein (spore coat pol 90.5 7.6 0.00026 33.1 15.2 170 75-258 2-201 (255)
5 3bcv_A Putative glycosyltransf 89.9 4.7 0.00016 34.0 12.3 168 74-259 5-212 (240)
6 4hg6_A Cellulose synthase subu 89.6 21 0.00071 36.9 19.6 172 72-259 138-355 (802)
7 2ffu_A Ppgalnact-2, polypeptid 88.4 9.7 0.00033 36.7 14.7 171 72-259 64-277 (501)
8 4fix_A UDP-galactofuranosyl tr 86.7 7.6 0.00026 39.3 13.2 42 215-259 363-404 (657)
9 2z86_A Chondroitin synthase; G 85.1 19 0.00065 35.5 15.1 43 216-259 275-317 (625)
10 2z86_A Chondroitin synthase; G 66.4 91 0.0031 30.4 13.9 167 73-258 374-559 (625)
11 2l82_A Designed protein OR32; 29.4 75 0.0026 24.5 4.6 50 80-134 55-104 (162)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.90 E-value=6.6e-23 Score=190.08 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=130.9
Q ss_pred CeeEEEEEECCCCCH-HHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCCeEEeccCCcC--Cc--h
Q 020721 73 DIRILIGILTLPDQY-HRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENM--NK--G 147 (322)
Q Consensus 73 ~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~DIv~ld~~D~y--~n--~ 147 (322)
.-.|+|+|+|++++. +|+.+||+||++++. . ..|+++..+++..+ .+ ..+++++.++.+++ .+ .
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~----~-~~fifsd~~d~~l~----~~--~~~~~~~~~~~~~~~~~~l~~ 80 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR----Q-QTFIFTDSPDERLQ----ER--LGPHLVVTQCSAEHSHPALSC 80 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSG----G-GEEEEESSCCHHHH----HH--HGGGEEECCC-------CCCH
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCC----C-ceEEEcCCCccccc----cc--ccccceeccccccccccchHH
Confidence 467889999999855 799999999998751 1 24544544444332 22 24578888876654 33 7
Q ss_pred HHHHHHHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcCC-CCCCeEEEEeecCCCC-------------CCC
Q 020721 148 KTYTYFSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVPL-PREDLYYGYVIPCRSM-------------DPF 213 (322)
Q Consensus 148 Kt~~~~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~~-~~~~~y~G~~~p~r~~-------------~~y 213 (322)
|+...+++.. +++++|++|+|||+||+++||+++|+.. +.+++|+|.....++. ..|
T Consensus 81 K~~~~~~~~l---------~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~~~~~~ 151 (280)
T 2j0a_A 81 KMAAEFDAFL---------VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRF 151 (280)
T ss_dssp HHHHHHHHHH---------HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------C
T ss_pred HHHHHHHHHh---------CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCcccccccccc
Confidence 8877776543 2478999999999999999999999886 5679999987632210 124
Q ss_pred Cccc-ccceeeeCHHHHHHHHHcCCC------CCCCCCchhHHHHHHHH-hcCCCCccccCccceeecCCC---CCcccc
Q 020721 214 VDYM-SGMGYLVSWDIAEWIRDSDIP------KNHLEGPEDKVFGAWIR-EGRRAKNRYNAKWSMYNFPVP---RTACTH 282 (322)
Q Consensus 214 p~y~-~G~gYvlS~d~~~~i~~~~~~------~~~~~~~EDv~vG~~l~-~~~~~~~~~~~~~~f~~~~~~---~~~c~~ 282 (322)
+|| +|+||+||++++++|+..... .......||+++|.|+. ++|+.... ...|..+... ...+..
T Consensus 152 -~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~---~~~Fh~~~~~~~~~~~~~l 227 (280)
T 2j0a_A 152 -WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQP---SPLFHSHLETLQLLGAAQL 227 (280)
T ss_dssp -CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEE---CTTCCCSSSCGGGCCTTTG
T ss_pred -CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCcee---cccccCCCchhccCCHHHh
Confidence 576 578999999999999974211 01334579999999998 89997643 2456554432 334432
Q ss_pred cccCCEEEEEcc
Q 020721 283 ELWADTIAVHLL 294 (322)
Q Consensus 283 ~~~~~~ia~H~~ 294 (322)
. ..-++++|..
T Consensus 228 ~-~~~~~s~~~~ 238 (280)
T 2j0a_A 228 P-EQVTLSYGVF 238 (280)
T ss_dssp G-GCSEEECEEE
T ss_pred c-cCcceecccc
Confidence 1 1346777853
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.16 E-value=1.6 Score=41.78 Aligned_cols=175 Identities=10% Similarity=-0.003 Sum_probs=95.5
Q ss_pred CCeeEEEEEECCCCC-HHHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCC-CeEEeccCCcCCchHH
Q 020721 72 EDIRILIGILTLPDQ-YHRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYD-DIIILNCKENMNKGKT 149 (322)
Q Consensus 72 ~~~~lli~V~S~~~~-~~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~-DIv~ld~~D~y~n~Kt 149 (322)
..+.+-|+|++--.. ..-+..|+.--.+.. ......++.|-..++++...+.+++-.+.+. .|..+...++.. +.
T Consensus 27 ~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~-~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G--~~ 103 (472)
T 1xhb_A 27 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSP-RHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSG--LI 103 (472)
T ss_dssp CCCCEEEEEEESSCCHHHHHHHHHHHHHSSC-GGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCC--HH
T ss_pred CCCCeEEEEEeCCCCHHHHHHHHHHHHhcCc-HhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCC--hH
Confidence 345677888887655 333334444333221 1112456666544554334344555455666 566665555443 33
Q ss_pred HHHHHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcCC--CCCCeEEEEee----------------------
Q 020721 150 YTYFSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVPL--PREDLYYGYVI---------------------- 205 (322)
Q Consensus 150 ~~~~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~~--~~~~~y~G~~~---------------------- 205 (322)
-+.-.-+ +. -..+|++..|+|+.+..+.|...+... .......|...
T Consensus 104 ~a~N~g~-~~--------A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (472)
T 1xhb_A 104 RARLKGA-AV--------SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNW 174 (472)
T ss_dssp HHHHHHH-HH--------CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECT
T ss_pred HHHHHHH-Hh--------ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeec
Confidence 2211111 11 146999999999999887666655432 11112222110
Q ss_pred -------cC-------CCC----CCCCcccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 206 -------PC-------RSM----DPFVDYMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 206 -------p~-------r~~----~~yp~y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
+. +.. ....+++.|+++++++++.+.+-... ......+.||+-++.=+.+.|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfd-e~~~~~g~ED~dl~~R~~~~G~ 245 (472)
T 1xhb_A 175 KLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYD-AGMDIWGGENLEISFRIWQCGG 245 (472)
T ss_dssp TCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCC-TTSCTTCCCCSHHHHHHHHTTC
T ss_pred cceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCC-CcccccCchhHHHHHHHHhcCC
Confidence 00 000 11124688999999999999986543 2334446899999988877664
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=91.22 E-value=3 Score=41.27 Aligned_cols=173 Identities=13% Similarity=-0.010 Sum_probs=94.1
Q ss_pred CeeEEEEEECCCCC-HHHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCCeEEeccCCcCCchHHHH
Q 020721 73 DIRILIGILTLPDQ-YHRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENMNKGKTYT 151 (322)
Q Consensus 73 ~~~lli~V~S~~~~-~~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~DIv~ld~~D~y~n~Kt~~ 151 (322)
.+.+-|+|++--.. ..-+..|..--.+.. ......++.|-..++++.....+++.++.+..|..+...++.. +.-+
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~-~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G--~~~A 187 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSP-PELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREG--LIRT 187 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSC-GGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSCCC--HHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCC-ccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCCCC--HHHH
Confidence 46788888887665 333333333332211 1112356666555555543445555566676676665544433 3222
Q ss_pred HHHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcC---CCCCCeEEEEee-----------------------
Q 020721 152 YFSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVP---LPREDLYYGYVI----------------------- 205 (322)
Q Consensus 152 ~~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~---~~~~~~y~G~~~----------------------- 205 (322)
.-.-+ +. -..+|++..|+|+.+..+-|...+.. .+. .+..+.+.
T Consensus 188 ~N~G~-~~--------A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~-~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 257 (570)
T 2d7i_A 188 RMLGA-SV--------ATGDVITFLDSHCEANVNWLPPLLDRIARNRK-TIVCPMIDVIDHDDFRYETQAGDAMRGAFDW 257 (570)
T ss_dssp HHHHH-HH--------CCSSEEEECCSSEEECTTCSHHHHHHHHHCTT-EEEEEEEEEECTTTCCEECCTTSSCEEEECT
T ss_pred HHHHH-Hh--------cCCCEEEEEcCCccccccHHHHHHHHHHhCCC-EEEeeeeeccCCCchhhccccCCcccccccc
Confidence 11111 11 14599999999999987655544433 221 11111110
Q ss_pred -------cCCC-------CCC-CCcccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 206 -------PCRS-------MDP-FVDYMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 206 -------p~r~-------~~~-yp~y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
+... ... -.+++.|++.++++++.+.+--.. ......+.||+-++.=+.+.|.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfD-e~~~~~g~ED~dl~~Rl~~~G~ 325 (570)
T 2d7i_A 258 EMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYD-PGLEIWGGEQYEISFKVWMCGG 325 (570)
T ss_dssp TCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSC-TTCCSSSSHHHHHHHHHHHTTC
T ss_pred cccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCC-CcccccCcchHHHHHHHHhCCC
Confidence 0000 000 124578999999999999986543 2334445899999988877764
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=90.46 E-value=7.6 Score=33.10 Aligned_cols=170 Identities=10% Similarity=0.030 Sum_probs=90.6
Q ss_pred eEEEEEECCCCCHHHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCCeEEeccCCcC-----Cc-hH
Q 020721 75 RILIGILTLPDQYHRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENM-----NK-GK 148 (322)
Q Consensus 75 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~DIv~ld~~D~y-----~n-~K 148 (322)
.|-|+|++--....-+++|+.--. +. ...+.++.|-..++++. ..+.+|......|..+.....- .| ++
T Consensus 2 ~vSViIp~yn~~~~l~~~l~Sl~~-q~--~~~~eiivvDd~S~d~t--~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~ 76 (255)
T 1qg8_A 2 KVSVIMTSYNKSDYVAKSISSILS-QT--FSDFELFIMDDNSNEET--LNVIRPFLNDNRVRFYQSDISGVKERTEKTRY 76 (255)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHHT-CS--CCCEEEEEEECSCCHHH--HHHHGGGGGSTTEEEEECCCCSHHHHHSSCHH
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHh-cc--CCceEEEEEECCCCchH--HHHHHHHhhcCCEEEEecccccccccccccCH
Confidence 455667775433223334443332 22 12565666655555432 2344444445556555443110 22 33
Q ss_pred HHHHHHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcC---CCCCCeEEEEeecC--C-----------CC--
Q 020721 149 TYTYFSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVP---LPREDLYYGYVIPC--R-----------SM-- 210 (322)
Q Consensus 149 t~~~~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~---~~~~~~y~G~~~p~--r-----------~~-- 210 (322)
..+ +....+. + +.+|++..|||.++..+.|...+.. .|.-.+..|..... . +.
T Consensus 77 ~~a-~N~gi~~-------a-~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
T 1qg8_A 77 AAL-INQAIEM-------A-EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQ 147 (255)
T ss_dssp HHH-HHHHHHH-------C-CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCCS
T ss_pred HHH-HHHHHHH-------c-CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcchhhccCchHH
Confidence 322 2222222 1 5699999999999987776665543 34445555543210 0 10
Q ss_pred --CCCCcccccceeeeCHHHHHHHH-HcC---CCCCCCCCchhHHHHHHHHhcC
Q 020721 211 --DPFVDYMSGMGYLVSWDIAEWIR-DSD---IPKNHLEGPEDKVFGAWIREGR 258 (322)
Q Consensus 211 --~~yp~y~~G~gYvlS~d~~~~i~-~~~---~~~~~~~~~EDv~vG~~l~~~~ 258 (322)
.....++.|++.++.+++++.+. ... .........||..+..-+...|
T Consensus 148 ~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g 201 (255)
T 1qg8_A 148 VTWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFY 201 (255)
T ss_dssp CBSCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC
T ss_pred HHHhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhC
Confidence 11234678999999999999986 330 0012345789999887776655
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=89.93 E-value=4.7 Score=34.04 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=86.2
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCCeEEeccCCcCCchHHHHHH
Q 020721 74 IRILIGILTLPDQYHRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENMNKGKTYTYF 153 (322)
Q Consensus 74 ~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~DIv~ld~~D~y~n~Kt~~~~ 153 (322)
+.|-|+|++--....-+++|+.--.+. ...+.++.|-..++++. ...+++-.+++..|..+. .++. ++..+ .
T Consensus 5 p~vsViIp~yn~~~~l~~~l~Sl~~q~---~~~~eiIvvDd~S~d~t-~~~~~~~~~~~~~i~~i~-~~n~--G~~~a-~ 76 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLDQCVQALLAQT---LSDIEIILIDDESPDNC-PKICDDYAAQYPNIKVIH-KKNA--GLGMA-C 76 (240)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHTCS---SSSEEEEEEECCCSSSH-HHHHHHHHHHCSSEEEEE-CCCC--CHHHH-H
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHhCc---CCCeEEEEEECCCCcCH-HHHHHHHHhhCCCEEEEE-CCCC--ChHHH-H
Confidence 456677777643333334454443322 12566666654444433 234444445566666664 3322 33322 1
Q ss_pred HhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcCCC--CCCeEEEEeecCC-CC-------------CCCC---
Q 020721 154 SSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVPLP--REDLYYGYVIPCR-SM-------------DPFV--- 214 (322)
Q Consensus 154 ~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~~~--~~~~y~G~~~p~r-~~-------------~~yp--- 214 (322)
....+. + +.+|++..|+|.++..+.|...+.... ..++..|...... .. ..|.
T Consensus 77 N~g~~~-------a-~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (240)
T 3bcv_A 77 NSGLDV-------A-TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNE 148 (240)
T ss_dssp HHHHHH-------C-CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC--------------------CEEECSHHH
T ss_pred HHHHHH-------c-CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHH
Confidence 112221 1 459999999999999877766654431 2233332211000 00 0000
Q ss_pred --------------------cccccceeeeCHHHHHHHH-HcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 215 --------------------DYMSGMGYLVSWDIAEWIR-DSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 215 --------------------~y~~G~gYvlS~d~~~~i~-~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
..++|++.++.+++++.+- .... ......||..++.-+...|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~--~~~~~~eD~~~~~r~~~~g~ 212 (240)
T 3bcv_A 149 IHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVS--ERILPSEDLIFNVDVLANSN 212 (240)
T ss_dssp HHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHTTCCCCC--TTTCTTHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhcchhhccccccccchhheeeeHHHHHHcCCccCC--CCCccCCCHHHHHHHHHhCC
Confidence 0134788899999999864 2221 11235699999887776654
No 6
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=89.62 E-value=21 Score=36.87 Aligned_cols=172 Identities=12% Similarity=-0.084 Sum_probs=91.3
Q ss_pred CCeeEEEEEECCCCCHHH-HHHHHHHhccCCCCCCceEEEEEecCCCchhH--------------HHHHHHHHhhCCCeE
Q 020721 72 EDIRILIGILTLPDQYHR-RHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQ--------------KVLVALEIMRYDDII 136 (322)
Q Consensus 72 ~~~~lli~V~S~~~~~~r-R~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~--------------~~~l~~E~~~~~DIv 136 (322)
+.+.+-|+|++--+..+- ++.|+.--.+. ....++.++.+-..+++++. ...+++-.+.++ +.
T Consensus 138 ~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~-yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~-v~ 215 (802)
T 4hg6_A 138 ELPTVDILVPSYNEPADMLSVTLAAAKNMI-YPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELG-VV 215 (802)
T ss_dssp TCCCEEEEEECTTCCHHHHHHHHHHHHTSS-CCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHT-CE
T ss_pred CCCcEEEEEEECCCCHHHHHHHHHHHHhcc-CCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcC-cE
Confidence 346788889998655433 55555443322 12223444444333332221 112222233343 33
Q ss_pred EeccCCcCCchHHHHHHHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcCC---CCCCeEEEEeecCC-----
Q 020721 137 ILNCKENMNKGKTYTYFSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVPL---PREDLYYGYVIPCR----- 208 (322)
Q Consensus 137 ~ld~~D~y~n~Kt~~~~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~~---~~~~~y~G~~~p~r----- 208 (322)
.+...++ ..+|.-+.-.-+ +. -+.+|++..|+|+.+..+.|.+.+... |.-....|......
T Consensus 216 ~i~~~~~-~~GKa~alN~gl-~~--------a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~ 285 (802)
T 4hg6_A 216 YSTRERN-EHAKAGNMSAAL-ER--------LKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQ 285 (802)
T ss_dssp EEECSSC-CSHHHHHHHHHH-HH--------CCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHH
T ss_pred EEEecCC-CCcchHHHHHHH-Hh--------cCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHh
Confidence 3332332 225654422222 22 156999999999999988777666543 33334434221000
Q ss_pred ----------CC------------C-CCCcccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 209 ----------SM------------D-PFVDYMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 209 ----------~~------------~-~yp~y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
.. + ...+++.|++.++.+++.+.+..... ..-.||..++.-+.+.|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ 355 (802)
T 4hg6_A 286 RNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGW 355 (802)
T ss_dssp HHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTC
T ss_pred hhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCC
Confidence 00 0 01245679999999999998854321 123599999999888664
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=88.37 E-value=9.7 Score=36.65 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=92.6
Q ss_pred CCeeEEEEEECCCCCH-HHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCCeEEeccCCcCCchHHH
Q 020721 72 EDIRILIGILTLPDQY-HRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENMNKGKTY 150 (322)
Q Consensus 72 ~~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~DIv~ld~~D~y~n~Kt~ 150 (322)
..+.+-|+|++--... .-+..|..--.+.. ......+++|=..++++... ...+.+..|..+...++. ++.-
T Consensus 64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~-~~~~~EIIvVDDgS~D~t~~----~~~~~~~~v~vi~~~~n~--G~~~ 136 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSALLRTVVSVLKKSP-PHLIKEIILVDDYSNDPEDG----ALLGKIEKVRVLRNDRRE--GLMR 136 (501)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSC-GGGEEEEEEEECSCSCTHHH----HGGGGBTTEEEEECSSCC--HHHH
T ss_pred CCCCEEEEEEeCcCcHHHHHHHHHHHHhhCc-hhhceeEEEEECCCCchHHH----HHHhcCCCEEEEECCCCc--CHHH
Confidence 3456778888876543 33334433332211 11124566666555554332 223456666665544433 3333
Q ss_pred HHHHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcCC--CCCCeEEEEee----------------------c
Q 020721 151 TYFSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVPL--PREDLYYGYVI----------------------P 206 (322)
Q Consensus 151 ~~~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~~--~~~~~y~G~~~----------------------p 206 (322)
+.-.-+ +. -..+|++..|+|..+..+.|...+... ....+..+... .
T Consensus 137 A~N~G~-~~--------A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (501)
T 2ffu_A 137 SRVRGA-DA--------AQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWN 207 (501)
T ss_dssp HHHHHH-HH--------CCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTT
T ss_pred HHHHHH-Hh--------cCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeec
Confidence 211111 21 146999999999999877666655442 11122222110 0
Q ss_pred -------C----------CCC-CCCCcccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 207 -------C----------RSM-DPFVDYMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 207 -------~----------r~~-~~yp~y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
. .+. ....+++.|++.++++++.+.+.... ......+.||+.++.-+...|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfd-e~~~~~g~ED~dl~~Rl~~~G~ 277 (501)
T 2ffu_A 208 LVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYD-MMMDVWGGENLEISFRVWQCGG 277 (501)
T ss_dssp CCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCC-TTCCSSSSHHHHHHHHHHHTTC
T ss_pred CCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCC-ccccccCcchHHHHHHHHhcCC
Confidence 0 000 00134678999999999999986543 2334456999999887777664
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=86.68 E-value=7.6 Score=39.30 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=32.9
Q ss_pred cccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 215 DYMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 215 ~y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
.|++|++.++++++.+.+---. .-+...||+-++.=+.+.|.
T Consensus 363 ~~~~g~~~lirr~v~~~vGgfd---~~F~~~ED~Dl~lR~~~~G~ 404 (657)
T 4fix_A 363 DYNGWWTCMIPRQVAEELGQPL---PLFIKWDDADYGLRAAEHGY 404 (657)
T ss_dssp SBCCTTEEEEEHHHHHHHCSCC---SCSSSSHHHHHHHHHHHTTC
T ss_pred cccchhHhHhhHHHHHHhCCCh---hHhccCcHHHHHHHHHHcCC
Confidence 4789999999999999985322 23456799999988888775
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=85.13 E-value=19 Score=35.49 Aligned_cols=43 Identities=19% Similarity=0.043 Sum_probs=32.1
Q ss_pred ccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcCC
Q 020721 216 YMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGRR 259 (322)
Q Consensus 216 y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~~ 259 (322)
++.|++.++++++++.+.-.. ......+.||..++.=+.+.|.
T Consensus 275 ~~~g~~~~~rr~~l~~iGgfd-e~~~~~g~ED~dl~~Rl~~~G~ 317 (625)
T 2z86_A 275 FFSGGNVAFAKKWLFRAGWFD-EEFTHWGGEDNEFGYRLYREGC 317 (625)
T ss_dssp GCCTTEEEEETHHHHHHCCCC-TTCSSCCCHHHHHHHHHHHTTC
T ss_pred EEeeceeeeEHHHHHHhCCCc-cccccCCcchhhhhhhHHhCCc
Confidence 478999999999999985332 2233345899999988887764
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=66.40 E-value=91 Score=30.44 Aligned_cols=167 Identities=8% Similarity=-0.070 Sum_probs=88.0
Q ss_pred CeeEEEEEECCCCCHHHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCCeEEeccCCcCCchHHHHH
Q 020721 73 DIRILIGILTLPDQYHRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDDIIILNCKENMNKGKTYTY 152 (322)
Q Consensus 73 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~DIv~ld~~D~y~n~Kt~~~ 152 (322)
.+.+-|+|++--....-++.|..--.+. ...+.++.|-..+++... ..+++-.+.+..|..+. .++. ++.-+
T Consensus 374 ~~~vsiii~~yn~~~~l~~~l~s~~~q~---~~~~eiivvdd~S~d~t~-~~~~~~~~~~~~i~~~~-~~n~--G~~~a- 445 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVRCVESALNQT---ITDLEVCICDDGSTDDTL-RILQEHYANHPRVRFIS-QKNK--GIGSA- 445 (625)
T ss_dssp SCSEEEEEEESSCTTTHHHHHHHHHSSS---CCSEEEEEEEESCSSSHH-HHHHHHHTTCTTEEEEE-ECCC--CHHHH-
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhCc---CCCeEEEEEECcCChhHH-HHHHHHHhhCCcEEEEe-CCCC--CHHHH-
Confidence 3567777777643323334444433322 135666666555554432 23443344555665554 2322 33322
Q ss_pred HHhhhhHhcCCCCCCCCceEEEEecCceEeeHHHHHHHhcC---CCCCCeEEEEee---cCC-------CCCC------C
Q 020721 153 FSSLPEIFNTSDRPYPPYHYVMKGDDDTYIRLENLVKSLVP---LPREDLYYGYVI---PCR-------SMDP------F 213 (322)
Q Consensus 153 ~~w~~~~~~~~~~~c~~~~yvlK~DDD~fv~~~~L~~~L~~---~~~~~~y~G~~~---p~r-------~~~~------y 213 (322)
+....+. -..+|++..|+|.++..+.|...+.. .+.-.+..|... +.. .... .
T Consensus 446 ~n~g~~~--------a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (625)
T 2z86_A 446 SNTAVRL--------CRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSREKLT 517 (625)
T ss_dssp HHHHHHH--------CCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEEEECTTSCEEEECCCCSSCCHHHHT
T ss_pred HHHHHHh--------cCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeEEECCCCCEeccCcccccCCHHHHh
Confidence 1122221 14599999999999988877666543 343344444321 100 0000 1
Q ss_pred CcccccceeeeCHHHHHHHHHcCCCCCCCCCchhHHHHHHHHhcC
Q 020721 214 VDYMSGMGYLVSWDIAEWIRDSDIPKNHLEGPEDKVFGAWIREGR 258 (322)
Q Consensus 214 p~y~~G~gYvlS~d~~~~i~~~~~~~~~~~~~EDv~vG~~l~~~~ 258 (322)
..++.|.+.++.+++.+.+.... ..+...||.-+..-+.+.|
T Consensus 518 ~~~~~~~~~~~~r~~~~~~ggfd---~~~~~~eD~dl~~r~~~~g 559 (625)
T 2z86_A 518 SAMICHHFRMFTARAWNLTEGFN---ESISNAVDYDMYLKLSEVG 559 (625)
T ss_dssp TSCCCCSCEEEEHHHHTTTTCCC---SSCSSCHHHHHHHHHTTTS
T ss_pred hcccCCceEEEEHHHHHHhCCCC---CccCChHHHHHHHHHHHhC
Confidence 23466788899998876553322 2234679998877666665
No 11
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.36 E-value=75 Score=24.51 Aligned_cols=50 Identities=24% Similarity=0.145 Sum_probs=32.6
Q ss_pred EECCCCCHHHHHHHHHHhccCCCCCCceEEEEEecCCCchhHHHHHHHHHhhCCC
Q 020721 80 ILTLPDQYHRRHFLRMIYGTQSPTGAQVDVKFVFCNLTKEDQKVLVALEIMRYDD 134 (322)
Q Consensus 80 V~S~~~~~~rR~aIR~TW~~~~~~~~~v~~~Fvlg~~~~~~~~~~l~~E~~~~~D 134 (322)
|.|..+..+-|..||+.|-+.+ .++++-++.....+++. ...+|+++-|=
T Consensus 55 vrtvedkedfrenireiweryp----qldvvvivttddkewik-dfieeakergv 104 (162)
T 2l82_A 55 VRTVEDKEDFRENIREIWERYP----QLDVVVIVTTDDKEWIK-DFIEEAKERGV 104 (162)
T ss_dssp EEECCSHHHHHHHHHHHHHHCT----TCCEEEEEECCCHHHHH-HHHHHHHHTTC
T ss_pred eeeeccHHHHHHHHHHHHHhCC----CCcEEEEEecCcHHHHH-HHHHHHHhcCc
Confidence 4555666677899999998764 33456666655555555 44567777764
Done!