BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020723
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 72/126 (57%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H +YG MA +T E K +KR F+LTR+ F GS ++AA W GDN + W+ L SI
Sbjct: 497 HNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPG 556
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
VL+ L G P GPDI GFA + L RWM +GA +PF R H D +P SFG +
Sbjct: 557 VLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGAD 616
Query: 305 VLFCSS 310
L +S
Sbjct: 617 SLLLNS 622
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 72/126 (57%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H +YG MA +T E K +KR F+LTR+ F GS ++AA W GDN + W+ L SI
Sbjct: 497 HNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPG 556
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
VL+ L G P GPDI GFA + L RWM +GA +PF R H D +P SFG +
Sbjct: 557 VLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGAD 616
Query: 305 VLFCSS 310
L +S
Sbjct: 617 SLLLNS 622
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 71/126 (56%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H++YG MA +T + ++ +KR F+LTR+ F GS R+AA W GDN ++WE + SI+
Sbjct: 526 HSLYGYSMAIATEQAVQKVFPNKRSFILTRSTFAGSGRHAAHWLGDNTASWEQMEWSITG 585
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
+L+ L G P G DI GF T L RWM +GA +PF R H +P FG+
Sbjct: 586 MLEFSLFGIPLVGADICGFVAETTEELCRRWMQLGAFYPFSRNHNSDGYEHQDPAFFGQN 645
Query: 305 VLFCSS 310
L S
Sbjct: 646 SLLVKS 651
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 188 YGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQ 247
Y + A +T++G + + +++ F+L+RAG+ G QRYA WTGDN +W+ L + + +VL
Sbjct: 375 YPLYEAMATFKGFRTSHRNE-IFILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLG 433
Query: 248 LGLSGQPFSGPDIGGFAG------NATPRLFGRWMGIGAMFPFCRGHTETDTIDHEP 298
L +SG PF G DIGGF G + + L ++ + FPF R H TD ID EP
Sbjct: 434 LSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSHKATDGIDTEP 490
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 72 GQQIVKLEFPAGTSLYGTGEVSGQLERTGKRIFTWNTDAWGYGTGTTSLYQSHPWVLAVL 131
+ IV+ + G GE + +L+R KR +N DA Y LY S P ++V
Sbjct: 50 NKVIVEKSLDLKEHIIGLGEKAFELDRKRKRYVMYNVDAGAYKKYQDPLYVSIPLFISV- 108
Query: 132 PNGEALGVLADTTRRCEIDLRKESTIQFIA 161
+G A G ++ + D+ E + I
Sbjct: 109 KDGVATGYFFNSASKVIFDVGLEEYDKVIV 138
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H ++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+ +++ M
Sbjct: 378 HNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKM 437
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ L + G ++G D+GGF + T L R++ +G P R H T + E + F
Sbjct: 438 LPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H ++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+ +++ M
Sbjct: 378 HNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKM 437
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ L + G ++G D+GGF + T L R++ +G P R H T + E + F
Sbjct: 438 LPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H ++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+ +++ M
Sbjct: 378 HNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKM 437
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ L + G ++G D+GGF + T L R++ +G P R H T + E + F
Sbjct: 438 LPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H ++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+ +++ M
Sbjct: 378 HNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKM 437
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ L + G ++G D+GGF + T L R++ +G P R H T + E + F
Sbjct: 438 LPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H +YG R TYE ++ +R V+TR+ F S R+A W GDN + W+ L SI
Sbjct: 531 HNLYGWSQTRPTYEAVQEV-TGQRGVVITRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIG 589
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
+++ L G ++G DI GF +A + RWM +GA +PF R H T +P S+
Sbjct: 590 MMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVA 649
Query: 305 VLFCSSVVI 313
+ S V+
Sbjct: 650 FVNISRTVL 658
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H ++G M R+ E + D +KR + +R+ +IG RY W G N S W H+ +++ M
Sbjct: 378 HNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGANKSWWSHILLNLKM 437
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ L + G ++G D+GGF + T L R++ +G P R H T + E + F
Sbjct: 438 LPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQF 494
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H ++G R+ E + D +KR +R+ +IG RY W GDN S W H+ +++
Sbjct: 378 HNLFGYNXTRAAGEAFERIDPEKRFLXFSRSSYIGXHRYGGIWXGDNKSWWSHILLNLKX 437
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ L G ++G D+GGF + T L R++ +G P R H T + E + F
Sbjct: 438 LPSLNXCGFXYTGADLGGFGDDTTRDLLLRFLALGVFTPLXRDHAAEGTREQECYQF 494
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT-WTGDNVSNWEHLHMSIS 243
H YG A Y+ + RPF++ RAGF+GSQRY WTGD W L +
Sbjct: 434 HNAYGHRWAEMLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIPWTGDVSRTWGGLASQVE 493
Query: 244 MVLQLGLSGQPFSGPDIGGFAGNAT--PRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSF 301
+ LQ+ L G + D+GGFA T ++ RW+ G P R H + D I EP
Sbjct: 494 LALQMSLLGFGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHGQ-DHIPSEPVFQ 552
Query: 302 GEE 304
EE
Sbjct: 553 DEE 555
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 205 KDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFA 264
K +R ++++R G+IG+Q + W GDN + ++ M I+ + + +S P G DIGGF
Sbjct: 629 KFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIANNINMNMSCLPLVGSDIGGFT 688
Query: 265 G--NATPR------LFGRWMGIGAMFPFCRGHTE--TDTIDH 296
N R L R++ G + P+ R H + ++ DH
Sbjct: 689 SYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHYDRWIESKDH 730
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H Y + + +K ++ + R+ +G+Q++ W GD +N+E + S+
Sbjct: 437 HNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRG 496
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
L +GLSG F DIGGF A ++ RW G + R H PW++ +E
Sbjct: 497 GLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPWAYDDE 554
Query: 305 VLFCSSVVIIAFF 317
S ++ FF
Sbjct: 555 -----SCDVVRFF 562
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 30 DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTYQCVRGQQIVKLEFPAGTSLYGT 89
+ SA + + SL F+ +R T + Y R +L+ G ++YG
Sbjct: 107 NLSARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYMFERLDLGVGETVYGL 165
Query: 90 GEVSGQLERTGKRIFTWNTDAWGYGTGTTSLYQSHPWVLAVLPNGEALGVLADTTR--RC 147
GE L R G+ + TWN D GT T Y++ P+ + GVL + +
Sbjct: 166 GERFTALVRNGQTVETWNRDG---GTSTEQAYKNIPFYMT----NRGYGVLVNHPQCVSF 218
Query: 148 EIDLRKESTIQFIAPSSYPVFTFGPFTSPTAVL 180
E+ K S +QF S Y + +P AVL
Sbjct: 219 EVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVL 251
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H Y + + +K ++ + R+ +G+Q++ W GD +N+E + S+
Sbjct: 437 HNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRG 496
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
L +GLSG F DIGGF A ++ RW G + R H PW++ +E
Sbjct: 497 GLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPWAYDDE 554
Query: 305 VLFCSSVVIIAFF 317
S ++ FF
Sbjct: 555 -----SCDVVRFF 562
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 30 DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTYQCVRGQQIVKLEFPAGTSLYGT 89
+ SA + + SL F+ +R T + Y R +L+ G ++YG
Sbjct: 107 NLSARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYMFERLDLGVGETVYGL 165
Query: 90 GEVSGQLERTGKRIFTWNTDAWGYGTGTTSLYQSHPWVLAVLPNGEALGVLADTTR--RC 147
GE L R G+ + TWN D GT T Y++ P+ + GVL + +
Sbjct: 166 GERFTALVRNGQTVETWNRDG---GTSTEQAYKNIPFYMT----NRGYGVLVNHPQCVSF 218
Query: 148 EIDLRKESTIQFIAPSSYPVFTFGPFTSPTAVL 180
E+ K S +QF S Y + +P AVL
Sbjct: 219 EVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVL 251
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 185 HAVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISM 244
H Y + + +K ++ + R+ +G+Q++ W GD +N+E S+
Sbjct: 437 HNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESXAESLRG 496
Query: 245 VLQLGLSGQPFSGPDIGGFAGNATPRLFGRWMGIGAMFPFCRGHTETDTIDHEPWSFGEE 304
L +GLSG F DIGGF A ++ RW G + R H PW++ +E
Sbjct: 497 GLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSY--RVPWAYDDE 554
Query: 305 VLFCSSVVIIAFF 317
S ++ FF
Sbjct: 555 -----SCDVVRFF 562
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 10/153 (6%)
Query: 30 DCSASDRQAAYPSLSFVNGKDRDTPISTRTRPSYTPTYQCVRGQQIVKLEFPAGTSLYGT 89
+ SA + + SL F+ +R T + Y R +L+ G ++YG
Sbjct: 107 NLSARVSKGEFWSLDFLRNGERITGSQVKNN-GYVQDTNNQRNYXFERLDLGVGETVYGL 165
Query: 90 GEVSGQLERTGKRIFTWNTDAWGYGTGTTSLYQSHPWVLAVLPNGEALGVLADTTR--RC 147
GE L R G+ + TWN D GT T Y++ P+ GVL + +
Sbjct: 166 GERFTALVRNGQTVETWNRDG---GTSTEQAYKNIPFYXT----NRGYGVLVNHPQCVSF 218
Query: 148 EIDLRKESTIQFIAPSSYPVFTFGPFTSPTAVL 180
E+ K S +QF S Y + +P AVL
Sbjct: 219 EVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVL 251
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 188 YGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-AATWTGDNVSNWEHLHMSISMVL 246
Y + A Y+G D DKR F+LTR+GF G QR +A W+GD VS W + I+ +
Sbjct: 616 YAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGI 675
Query: 247 QLGLSGQPFSGPDIGGFAGNATPR-----------------------LFGRWMGIGAMFP 283
L+G DIGGF R L RW GA P
Sbjct: 676 GTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVP 735
Query: 284 FCRGHTET 291
R H +
Sbjct: 736 LYRSHGQN 743
>pdb|2WBV|A Chain A, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|B Chain B, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|C Chain C, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|D Chain D, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|E Chain E, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|F Chain F, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
Length = 189
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 94 GQLERTGK--RIFTWNTDAWGYGTGTTSLYQSHPWVLAVLPNGEALGVLADTTRRCEID 150
GQL TG TW WG T SH W L +PN E A T RC +D
Sbjct: 75 GQLMSTGNINSTTTWGEKPWG--NNTVQPRPSHTWKLC-MPNREVYSTPAATISRCGLD 130
>pdb|2J1K|C Chain C, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|D Chain D, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|E Chain E, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|F Chain F, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|H Chain H, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|I Chain I, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|L Chain L, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|M Chain M, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|N Chain N, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Q Chain Q, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|R Chain R, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|S Chain S, Cav-2 Fibre Head In Complex With Car D1
pdb|2J2J|A Chain A, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|B Chain B, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|C Chain C, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|D Chain D, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|E Chain E, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|F Chain F, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2W9L|C Chain C, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|D Chain D, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|E Chain E, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|F Chain F, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|H Chain H, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|I Chain I, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|L Chain L, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|M Chain M, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|N Chain N, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Q Chain Q, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|R Chain R, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|S Chain S, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 197
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 94 GQLERTGK--RIFTWNTDAWGYGTGTTSLYQSHPWVLAVLPNGEALGVLADTTRRCEID 150
GQL TG TW WG T SH W L +PN E A T RC +D
Sbjct: 83 GQLMSTGNINSTTTWGEKPWG--NNTVQPRPSHTWKLC-MPNREVYSTPAATISRCGLD 138
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 144 TRRCEIDLRKESTIQFIAPSSYPVF 168
T +C LRK S++Q++ PS + +F
Sbjct: 20 TLKCVTSLRKNSSLQWLTPSGFTIF 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,158,130
Number of Sequences: 62578
Number of extensions: 441597
Number of successful extensions: 1132
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 33
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)