BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020726
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S0W|C Chain C, 1b Lactamse B LACTAMASE INHIBITOR
 pdb|1S0W|D Chain D, 1b Lactamse B LACTAMASE INHIBITOR
          Length = 165

 Score = 28.5 bits (62), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 169 CGTHGSASGSIKSSGHNKNNKFAYIWVGNSETQCPGQCAWPFHQPIYGPQSPPL-VAPNN 227
           C T GS   SI   GH   + +AY   G +      +      + +  P +P L +A  N
Sbjct: 30  CETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFN 89

Query: 228 DVGLDGMVINLASLLAGTATNPFGNGYFQGPKEAPLEAASACPGVYG---KGAYPGYAGN 284
            V +      + + +   +   +   Y   P  A +  + +C  V G    GAY G A  
Sbjct: 90  QVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGAYRGSAHL 149

Query: 285 LFVD 288
            F D
Sbjct: 150 WFTD 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,009,439
Number of Sequences: 62578
Number of extensions: 352730
Number of successful extensions: 647
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 10
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)