Query 020726
Match_columns 322
No_of_seqs 114 out of 176
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b5b_A Defensin; antibiotic; N 27.2 23 0.00078 23.5 1.2 10 199-208 1-10 (36)
2 1v54_B Cytochrome C oxidase po 20.7 42 0.0014 30.2 2.0 11 149-159 149-159 (227)
3 1fft_B Ubiquinol oxidase; elec 19.4 49 0.0017 31.4 2.2 15 145-159 155-170 (315)
4 2cua_A Protein (CUA); CUA cent 17.5 74 0.0025 26.0 2.7 12 162-173 113-125 (135)
5 1jrj_A Exendin-4; Trp-CAGE, GL 16.6 74 0.0025 21.8 2.0 15 68-82 15-29 (39)
6 2yev_B Cytochrome C oxidase su 21.0 31 0.001 32.5 0.0 11 149-159 150-160 (337)
7 2eki_A DRG 1, developmentally- 16.1 66 0.0023 25.6 1.9 41 151-205 28-69 (93)
8 1cno_A Cytochrome C552; electr 15.1 92 0.0031 22.2 2.4 21 62-82 65-85 (87)
9 1u9d_A Hypothetical protein VC 14.9 1.4E+02 0.0048 24.6 3.7 32 42-77 59-90 (122)
10 1cyx_A CYOA; electron transpor 14.2 68 0.0023 28.8 1.7 12 149-160 50-61 (205)
No 1
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=27.23 E-value=23 Score=23.46 Aligned_cols=10 Identities=50% Similarity=1.458 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 020726 199 ETQCPGQCAW 208 (322)
Q Consensus 199 ~~qCpg~CAw 208 (322)
|+.|||+|.-
T Consensus 1 ekkcpgrctl 10 (36)
T 2b5b_A 1 EKKCPGRCTL 10 (36)
T ss_dssp CCCCSSCSSS
T ss_pred CCCCCcceeE
Confidence 5789999984
No 2
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=20.74 E-value=42 Score=30.19 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=10.3
Q ss_pred ceEEEeccCCc
Q 020726 149 AINVVLTASDV 159 (322)
Q Consensus 149 gvylVLTa~DV 159 (322)
-|.+.+||+||
T Consensus 149 ~Vr~~vtS~DV 159 (227)
T 1v54_B 149 TIRMLVSSEDV 159 (227)
T ss_dssp CEEEEEEESSS
T ss_pred EEEEEEEeCcc
Confidence 79999999999
No 3
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=19.36 E-value=49 Score=31.38 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=12.3
Q ss_pred CCCC-ceEEEeccCCc
Q 020726 145 DQKD-AINVVLTASDV 159 (322)
Q Consensus 145 ~~~~-gvylVLTa~DV 159 (322)
.|.+ -|.+.+||.||
T Consensus 155 lP~g~~V~~~lTS~DV 170 (315)
T 1fft_B 155 FPANTPVYFKVTSNSV 170 (315)
T ss_dssp CCSSSEEEEEECBSSS
T ss_pred EeCCCEEEEEEEeCCc
Confidence 4544 79999999999
No 4
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=17.45 E-value=74 Score=26.04 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=6.5
Q ss_pred ccccccCcC-CCC
Q 020726 162 EGFCMSRCG-THG 173 (322)
Q Consensus 162 ~gFC~s~CG-~H~ 173 (322)
+++|..+|| .|.
T Consensus 113 ~~~C~e~CG~~H~ 125 (135)
T 2cua_A 113 RIICNQYCGLGHQ 125 (135)
T ss_dssp EEECCSCCSTTST
T ss_pred EEECcccCCCCcC
Confidence 445666665 443
No 5
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=16.55 E-value=74 Score=21.75 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=11.9
Q ss_pred hHhHHHHHHHhcCCC
Q 020726 68 QKAIISDFITSLSSY 82 (322)
Q Consensus 68 Qksii~DFl~Sls~~ 82 (322)
++..+.|||++|-..
T Consensus 15 ~~~aak~fv~wL~~~ 29 (39)
T 1jrj_A 15 EEEAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 566789999999754
No 6
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=20.98 E-value=31 Score=32.49 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.0
Q ss_pred ceEEEeccCCc
Q 020726 149 AINVVLTASDV 159 (322)
Q Consensus 149 gvylVLTa~DV 159 (322)
-|.+.+||+||
T Consensus 150 ~v~~~~ts~DV 160 (337)
T 2yev_B 150 PVELEITSKDV 160 (337)
Confidence 67888888887
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=16.10 E-value=66 Score=25.60 Aligned_cols=41 Identities=39% Similarity=0.570 Sum_probs=28.8
Q ss_pred EEEeccCCcccccccccCcCCCCCCCCcccccCCCCCcceEEEEe-cCCCCCCCCC
Q 020726 151 NVVLTASDVAVEGFCMSRCGTHGSASGSIKSSGHNKNNKFAYIWV-GNSETQCPGQ 205 (322)
Q Consensus 151 ylVLTa~DV~v~gFC~s~CG~H~s~~~~~~~~~~~~~~~~~YawV-GNs~~qCpg~ 205 (322)
.++|..+.-+|+.||. ..|... +..+.||+| |.+++..|-+
T Consensus 28 pviL~~~GsTv~Dfa~---~IH~di-----------~~~fkyA~VwG~saK~~~qr 69 (93)
T 2eki_A 28 PVVLPYSRTTVEDFCM---KIHKNL-----------IKEFKYALVWGLSVKHNPQK 69 (93)
T ss_dssp CEEEETTSCCHHHHHH---HHCTTC-----------TTTEEEEEEBSTTSSSSSEE
T ss_pred CEEEecCCCCHHHHHH---HHHHHH-----------HhhccEEEEecccccCCCEE
Confidence 3677577889999996 467776 467888887 7666545433
No 8
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=15.09 E-value=92 Score=22.21 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.9
Q ss_pred ecCChhhHhHHHHHHHhcCCC
Q 020726 62 GKFNPSQKAIISDFITSLSSY 82 (322)
Q Consensus 62 G~ftp~Qksii~DFl~Sls~~ 82 (322)
+.+++.|...|.+||.+|..+
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~~ 85 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPAA 85 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCTT
T ss_pred hhCCHHHHHHHHHHHHhCCcc
Confidence 468999999999999999753
No 9
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=14.94 E-value=1.4e+02 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.524 Sum_probs=21.9
Q ss_pred ceecCCccccCceeEEEEEeecCChhhHhHHHHHHH
Q 020726 42 LQYHNGALLSGKIAINLIWYGKFNPSQKAIISDFIT 77 (322)
Q Consensus 42 l~YH~GplLtg~i~V~lIwYG~ftp~Qksii~DFl~ 77 (322)
..||+| .+---|++-|.|| ++.||..+...+.
T Consensus 59 ~~i~~G---~~MP~VeV~~fgR-t~EqK~~la~~IT 90 (122)
T 1u9d_A 59 QYFAEG---GVYPMVEVLWFGR-EQQTQDQIAQVIT 90 (122)
T ss_dssp CCCCTT---CCCCEEEEEESCC-CHHHHHHHHHHHH
T ss_pred EEEecC---CCCCEEEEEEcCC-CHHHHHHHHHHHH
Confidence 346777 4444688889997 8888876555543
No 10
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=14.19 E-value=68 Score=28.79 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=8.4
Q ss_pred ceEEEeccCCcc
Q 020726 149 AINVVLTASDVA 160 (322)
Q Consensus 149 gvylVLTa~DV~ 160 (322)
-|.+.|||.||.
T Consensus 50 ~V~~~lTS~DVi 61 (205)
T 1cyx_A 50 PVYFKVTSNSVM 61 (205)
T ss_dssp CEEEEEEESSSC
T ss_pred EEEEEEecCCce
Confidence 577777777763
Done!