Query 020726
Match_columns 322
No_of_seqs 114 out of 176
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 07:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020726.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020726hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5e2 f.23.12.1 (E:31-86) Ir 41.4 6.1 0.00044 27.4 2.0 16 67-82 40-55 (56)
2 d1v54b1 b.6.1.2 (B:91-227) Cyt 28.3 12 0.00091 29.2 2.1 12 149-160 59-70 (137)
3 d2cuaa_ b.6.1.2 (A:) Cytochrom 26.3 18 0.0013 27.5 2.7 13 162-174 100-113 (122)
4 d1ppje2 f.23.12.1 (E:1-69) Iro 23.9 18 0.0013 25.7 2.0 16 67-82 50-65 (69)
5 d3ehbb1 b.6.1.2 (B:108-252) Cy 21.5 20 0.0015 28.1 2.1 12 149-160 62-73 (145)
6 d1cyxa_ b.6.1.2 (A:) Quinol ox 20.9 19 0.0014 28.9 1.8 21 151-171 68-89 (158)
7 d3dtub1 b.6.1.2 (B:130-281) Cy 19.9 22 0.0016 28.1 2.1 12 149-160 76-87 (152)
8 d1eb7a2 a.3.1.5 (A:165-323) Di 19.0 40 0.0029 26.5 3.4 19 64-82 120-138 (159)
9 d1n8va_ a.118.21.1 (A:) Chemos 15.9 32 0.0023 25.7 2.0 36 63-108 55-90 (101)
10 d1wvec1 a.3.1.1 (C:602-675) p- 14.5 43 0.0031 22.6 2.2 18 63-80 56-73 (74)
No 1
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.43 E-value=6.1 Score=27.38 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.8
Q ss_pred hhHhHHHHHHHhcCCC
Q 020726 67 SQKAIISDFITSLSSY 82 (322)
Q Consensus 67 ~Qksii~DFl~Sls~~ 82 (322)
.-|++|.|||.+++++
T Consensus 40 ~AKstV~~FlssMSAS 55 (56)
T d3cx5e2 40 GAKSTVETFISSMTAT 55 (56)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhcccc
Confidence 3689999999999874
No 2
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.29 E-value=12 Score=29.25 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=9.3
Q ss_pred ceEEEeccCCcc
Q 020726 149 AINVVLTASDVA 160 (322)
Q Consensus 149 gvylVLTa~DV~ 160 (322)
-|.+.|||.||.
T Consensus 59 ~v~~~ltS~DVi 70 (137)
T d1v54b1 59 TIRMLVSSEDVL 70 (137)
T ss_dssp CEEEEEEESSSC
T ss_pred cceeeeccCccc
Confidence 677888888874
No 3
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}
Probab=26.35 E-value=18 Score=27.50 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=7.7
Q ss_pred ccccccCcCC-CCC
Q 020726 162 EGFCMSRCGT-HGS 174 (322)
Q Consensus 162 ~gFC~s~CG~-H~s 174 (322)
+..|..+||. |..
T Consensus 100 ~~~C~~~CG~~H~~ 113 (122)
T d2cuaa_ 100 RIICNQYCGLGHQN 113 (122)
T ss_dssp EEECCSCCSTTSTT
T ss_pred EEEehhccCCCccc
Confidence 3457777765 543
No 4
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.87 E-value=18 Score=25.72 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=13.9
Q ss_pred hhHhHHHHHHHhcCCC
Q 020726 67 SQKAIISDFITSLSSY 82 (322)
Q Consensus 67 ~Qksii~DFl~Sls~~ 82 (322)
.-|++|.+|+.+++++
T Consensus 50 ~AK~~V~~fvssmSaS 65 (69)
T d1ppje2 50 AAKNVVSQFVSSMSAS 65 (69)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCcc
Confidence 4689999999999875
No 5
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]}
Probab=21.47 E-value=20 Score=28.11 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=8.7
Q ss_pred ceEEEeccCCcc
Q 020726 149 AINVVLTASDVA 160 (322)
Q Consensus 149 gvylVLTa~DV~ 160 (322)
-|-+.|||.||.
T Consensus 62 ~V~~~ltS~DVi 73 (145)
T d3ehbb1 62 KVLVQVTATDVI 73 (145)
T ss_dssp EEEEEEEESSSC
T ss_pred eEEEEEEeCccc
Confidence 667777888774
No 6
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=20.92 E-value=19 Score=28.87 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=10.3
Q ss_pred EEEeccCCccc-ccccccCcCC
Q 020726 151 NVVLTASDVAV-EGFCMSRCGT 171 (322)
Q Consensus 151 ylVLTa~DV~v-~gFC~s~CG~ 171 (322)
.+.+++...-+ .+.|..+||.
T Consensus 68 ~~~~~~~~~G~y~g~Cae~CG~ 89 (158)
T d1cyxa_ 68 RLHLIANEPGTYDGICAEICGP 89 (158)
T ss_dssp EEEECCSSSEEEEEEECSCCST
T ss_pred eeeeeecCCCcEEEEchhhcCc
Confidence 33344433332 4567777753
No 7
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.88 E-value=22 Score=28.14 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=9.0
Q ss_pred ceEEEeccCCcc
Q 020726 149 AINVVLTASDVA 160 (322)
Q Consensus 149 gvylVLTa~DV~ 160 (322)
-|.+.|||.||.
T Consensus 76 ~v~~~ltS~DVi 87 (152)
T d3dtub1 76 TVVVQVTGADVI 87 (152)
T ss_dssp EEEEEEEESSSC
T ss_pred EEEEEEecCchh
Confidence 567788888874
No 8
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.99 E-value=40 Score=26.47 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=17.1
Q ss_pred CChhhHhHHHHHHHhcCCC
Q 020726 64 FNPSQKAIISDFITSLSSY 82 (322)
Q Consensus 64 ftp~Qksii~DFl~Sls~~ 82 (322)
.++.|++-|..||+||+..
T Consensus 120 Ls~~e~~~LvaFL~sLt~~ 138 (159)
T d1eb7a2 120 LAPDDVENIVAFLHSLSGK 138 (159)
T ss_dssp CCHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 6789999999999999864
No 9
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=15.90 E-value=32 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.4
Q ss_pred cCChhhHhHHHHHHHhcCCCccCccCCCChHHHHhHHHHHhhcccC
Q 020726 63 KFNPSQKAIISDFITSLSSYSSQLKASQPSVATWWKTTEKYYHLIS 108 (322)
Q Consensus 63 ~ftp~Qksii~DFl~Sls~~~~~~~~~~PsVs~WW~t~~~Y~~~~~ 108 (322)
+=|+.||..+..+|.-|...-+ .+|..+.+-||-.+
T Consensus 55 kCT~kQK~~~~kvi~~l~~~~p----------~~w~~l~~KYDP~g 90 (101)
T d1n8va_ 55 KCTENQEKGAYRVIEHLIKNEI----------EIWRELTAKYDPTG 90 (101)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHCcCc
Confidence 4689999999999999976533 66766666555544
No 10
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=14.51 E-value=43 Score=22.59 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=15.9
Q ss_pred cCChhhHhHHHHHHHhcC
Q 020726 63 KFNPSQKAIISDFITSLS 80 (322)
Q Consensus 63 ~ftp~Qksii~DFl~Sls 80 (322)
.+++.|...|.+||.||.
T Consensus 56 ~lsd~ei~~l~~Yi~slp 73 (74)
T d1wvec1 56 YVDDESLTQVAEYLSSLP 73 (74)
T ss_dssp TSCHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhCC
Confidence 578899999999999984
Done!