Query 020727
Match_columns 322
No_of_seqs 291 out of 2098
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 2.3E-27 7.9E-32 215.4 22.2 230 6-245 5-254 (336)
2 2p1m_B Transport inhibitor res 99.9 7.9E-23 2.7E-27 199.1 15.4 220 8-244 4-241 (594)
3 3ogk_B Coronatine-insensitive 99.9 4.1E-21 1.4E-25 187.0 16.3 226 1-245 1-250 (592)
4 2ca6_A RAN GTPase-activating p 99.6 4.7E-14 1.6E-18 130.2 19.0 132 105-245 159-310 (386)
5 2ca6_A RAN GTPase-activating p 99.6 1E-13 3.4E-18 128.0 20.1 157 80-245 93-281 (386)
6 3ogk_B Coronatine-insensitive 99.6 1.8E-14 6.2E-19 140.0 15.7 163 79-243 316-518 (592)
7 2ast_B S-phase kinase-associat 99.6 5.7E-14 1.9E-18 126.9 14.9 160 79-245 116-279 (336)
8 2p1m_B Transport inhibitor res 99.5 2.4E-13 8.4E-18 132.0 15.2 141 79-223 312-466 (594)
9 3e4g_A ATP synthase subunit S, 99.4 3.5E-13 1.2E-17 109.9 6.4 106 106-242 62-171 (176)
10 1fs1_A SKP2 F-BOX, cyclin A/CD 99.4 3.2E-13 1.1E-17 88.1 3.8 50 5-55 4-53 (53)
11 3e4g_A ATP synthase subunit S, 99.4 4.8E-13 1.6E-17 109.1 5.6 103 81-191 61-170 (176)
12 3un9_A NLR family member X1; l 99.3 2.1E-11 7.3E-16 112.0 16.1 165 51-227 74-252 (372)
13 3un9_A NLR family member X1; l 99.3 1.7E-11 6E-16 112.6 13.4 157 80-245 71-246 (372)
14 1z7x_W Ribonuclease inhibitor; 99.2 1.1E-10 3.6E-15 109.8 15.3 157 80-245 27-206 (461)
15 1z7x_W Ribonuclease inhibitor; 99.2 4.2E-10 1.4E-14 105.7 17.8 157 80-245 55-234 (461)
16 1io0_A Tropomodulin; LRR prote 99.2 6.8E-10 2.3E-14 91.8 15.4 123 94-224 25-162 (185)
17 3goz_A Leucine-rich repeat-con 99.1 5E-10 1.7E-14 102.3 11.5 139 81-224 80-236 (362)
18 2je0_A Acidic leucine-rich nuc 99.1 5.9E-11 2E-15 94.3 3.6 130 104-245 16-147 (149)
19 3goz_A Leucine-rich repeat-con 99.0 6.7E-09 2.3E-13 94.8 15.0 187 48-245 21-232 (362)
20 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.4E-15 92.3 2.8 138 73-222 9-149 (149)
21 2ell_A Acidic leucine-rich nuc 98.9 1.3E-10 4.3E-15 94.3 0.6 130 104-245 23-154 (168)
22 1io0_A Tropomodulin; LRR prote 98.9 2.3E-08 8E-13 82.4 13.6 127 71-204 27-167 (185)
23 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.9E-14 99.3 5.9 157 81-245 139-314 (362)
24 4ezg_A Putative uncharacterize 98.9 9.6E-10 3.3E-14 91.6 3.8 143 82-245 45-188 (197)
25 2ell_A Acidic leucine-rich nuc 98.9 2.3E-10 7.8E-15 92.8 -0.3 140 75-226 18-160 (168)
26 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.6E-14 98.9 4.4 137 80-227 171-320 (362)
27 4fmz_A Internalin; leucine ric 98.7 1.9E-08 6.6E-13 90.8 7.4 142 80-244 176-317 (347)
28 1pgv_A TMD-1, tropomodulin TMD 98.7 1.2E-07 4.2E-12 78.5 11.4 122 94-223 30-167 (197)
29 1h6u_A Internalin H; cell adhe 98.7 3.3E-08 1.1E-12 88.2 8.4 78 80-166 62-139 (308)
30 1a9n_A U2A', U2A'; complex (nu 98.7 3.6E-09 1.2E-13 86.4 1.8 127 104-244 18-146 (176)
31 4ezg_A Putative uncharacterize 98.7 6.7E-09 2.3E-13 86.4 3.2 125 103-245 42-166 (197)
32 1h6t_A Internalin B; cell adhe 98.7 2E-08 6.9E-13 88.9 6.3 141 80-245 67-207 (291)
33 4fmz_A Internalin; leucine ric 98.7 2.2E-08 7.5E-13 90.4 6.7 141 80-245 154-294 (347)
34 1h6t_A Internalin B; cell adhe 98.6 1.8E-08 6.1E-13 89.2 5.1 139 82-245 47-185 (291)
35 1h6u_A Internalin H; cell adhe 98.6 3.1E-08 1.1E-12 88.4 5.7 138 82-244 42-179 (308)
36 1m9s_A Internalin B; cell inva 98.6 2.5E-08 8.7E-13 97.2 4.5 141 80-245 64-204 (605)
37 1wwl_A Monocyte differentiatio 98.6 1.2E-08 4.2E-13 91.1 1.9 157 80-245 94-260 (312)
38 4glp_A Monocyte differentiatio 98.6 1.2E-08 4.2E-13 90.9 1.6 154 82-245 92-258 (310)
39 4fcg_A Uncharacterized protein 98.6 6.8E-09 2.3E-13 93.5 -0.2 156 79-244 79-235 (328)
40 3m19_A Variable lymphocyte rec 98.6 3.7E-09 1.3E-13 91.4 -2.0 152 81-245 35-186 (251)
41 3rfs_A Internalin B, repeat mo 98.5 7.6E-09 2.6E-13 90.6 -0.4 150 81-245 63-212 (272)
42 3l2o_B F-box only protein 4; s 98.5 1.5E-08 5.2E-13 88.1 1.4 48 9-57 4-51 (312)
43 1wwl_A Monocyte differentiatio 98.5 2.1E-08 7.2E-13 89.5 2.4 138 80-224 120-264 (312)
44 2o6s_A Variable lymphocyte rec 98.5 3.4E-09 1.2E-13 88.8 -2.7 144 81-244 28-171 (208)
45 1xeu_A Internalin C; cellular 98.5 1.9E-08 6.5E-13 87.7 1.8 139 81-245 41-179 (263)
46 3rfs_A Internalin B, repeat mo 98.5 1.4E-08 4.9E-13 88.8 0.5 148 81-245 41-188 (272)
47 4fcg_A Uncharacterized protein 98.5 1.7E-09 5.9E-14 97.5 -5.5 150 80-245 103-260 (328)
48 1m9s_A Internalin B; cell inva 98.5 1.1E-07 3.8E-12 92.6 6.2 140 81-245 43-182 (605)
49 1ds9_A Outer arm dynein; leuci 98.5 4.1E-09 1.4E-13 87.8 -3.4 146 83-244 25-180 (198)
50 1ozn_A Reticulon 4 receptor; N 98.5 9.5E-09 3.2E-13 90.4 -1.5 58 186-245 175-232 (285)
51 4glp_A Monocyte differentiatio 98.5 9.9E-08 3.4E-12 85.0 5.2 115 103-224 143-262 (310)
52 2z7x_B TOLL-like receptor 1, v 98.5 4.3E-08 1.5E-12 93.6 2.7 146 82-244 303-450 (520)
53 2o6q_A Variable lymphocyte rec 98.5 7.2E-09 2.5E-13 90.6 -2.5 83 81-166 37-119 (270)
54 1a9n_A U2A', U2A'; complex (nu 98.5 3.1E-08 1E-12 80.8 1.4 132 80-224 18-151 (176)
55 3o53_A Protein LRIM1, AGAP0063 98.4 1.2E-09 4.2E-14 97.8 -8.3 125 104-244 119-243 (317)
56 2o6q_A Variable lymphocyte rec 98.4 8.8E-09 3E-13 90.0 -2.6 153 80-245 60-212 (270)
57 3v47_A TOLL-like receptor 5B a 98.4 8.6E-09 2.9E-13 96.6 -2.9 135 81-224 30-165 (455)
58 1pgv_A TMD-1, tropomodulin TMD 98.4 1.7E-06 5.7E-11 71.7 11.2 120 119-245 30-164 (197)
59 2z80_A TOLL-like receptor 2, v 98.4 4.3E-08 1.5E-12 88.9 1.6 58 81-139 76-133 (353)
60 1o6v_A Internalin A; bacterial 98.4 2.4E-07 8.1E-12 87.3 6.2 78 80-166 220-297 (466)
61 2z81_A CD282 antigen, TOLL-lik 98.4 1.5E-06 5E-11 83.3 11.7 86 81-167 310-398 (549)
62 2e31_A FBS1, F-box only protei 98.4 9.9E-08 3.4E-12 83.8 3.1 48 7-55 48-96 (297)
63 3rgz_A Protein brassinosteroid 98.4 2.7E-08 9.2E-13 99.8 -0.7 157 81-244 100-275 (768)
64 1p9a_G Platelet glycoprotein I 98.4 1.2E-08 4.1E-13 90.3 -3.0 38 186-224 146-183 (290)
65 1o6v_A Internalin A; bacterial 98.4 5.8E-07 2E-11 84.6 8.3 35 186-223 285-319 (466)
66 1ozn_A Reticulon 4 receptor; N 98.4 1E-08 3.6E-13 90.1 -3.6 38 186-224 151-188 (285)
67 2z66_A Variable lymphocyte rec 98.4 4.7E-09 1.6E-13 93.3 -6.3 154 80-245 77-230 (306)
68 3v47_A TOLL-like receptor 5B a 98.3 6.9E-08 2.4E-12 90.4 0.8 131 105-245 30-161 (455)
69 3zyj_A Leucine-rich repeat-con 98.3 1.6E-08 5.4E-13 94.7 -3.8 58 186-245 229-286 (440)
70 3o53_A Protein LRIM1, AGAP0063 98.3 1.7E-08 5.9E-13 90.3 -3.4 57 80-139 33-89 (317)
71 2o6s_A Variable lymphocyte rec 98.3 4.9E-08 1.7E-12 81.7 -0.4 129 104-245 27-155 (208)
72 3zyi_A Leucine-rich repeat-con 98.3 2E-08 6.7E-13 94.4 -3.4 58 186-245 240-297 (452)
73 3t6q_A CD180 antigen; protein- 98.3 1.3E-08 4.3E-13 99.1 -4.9 15 104-118 300-314 (606)
74 3e6j_A Variable lymphocyte rec 98.3 6.8E-08 2.3E-12 82.3 -0.4 131 81-224 40-170 (229)
75 1ogq_A PGIP-2, polygalacturona 98.3 9.8E-09 3.3E-13 91.8 -6.1 53 190-245 199-251 (313)
76 3m19_A Variable lymphocyte rec 98.3 3.4E-08 1.2E-12 85.3 -2.5 135 80-226 58-192 (251)
77 2id5_A Lingo-1, leucine rich r 98.3 4E-08 1.4E-12 92.8 -2.3 130 103-245 78-207 (477)
78 3e6j_A Variable lymphocyte rec 98.3 2.6E-08 9E-13 84.9 -3.6 127 105-245 40-166 (229)
79 2z63_A TOLL-like receptor 4, v 98.3 7.7E-09 2.6E-13 99.6 -8.1 58 186-244 443-500 (570)
80 1xeu_A Internalin C; cellular 98.3 5.7E-07 1.9E-11 78.3 4.4 120 102-245 38-157 (263)
81 2z80_A TOLL-like receptor 2, v 98.3 2.9E-08 1E-12 90.0 -4.0 85 81-168 52-136 (353)
82 1dce_A Protein (RAB geranylger 98.3 1.8E-07 6.1E-12 90.5 1.2 123 105-243 441-565 (567)
83 2id5_A Lingo-1, leucine rich r 98.2 5.3E-08 1.8E-12 91.9 -2.7 129 103-244 54-182 (477)
84 3zyi_A Leucine-rich repeat-con 98.2 4.8E-08 1.7E-12 91.7 -3.0 58 186-245 216-273 (452)
85 3zyj_A Leucine-rich repeat-con 98.2 5.1E-08 1.7E-12 91.3 -3.3 58 186-245 205-262 (440)
86 2z62_A TOLL-like receptor 4, v 98.2 3.8E-08 1.3E-12 86.1 -4.0 134 81-225 28-161 (276)
87 2z66_A Variable lymphocyte rec 98.2 1.5E-08 5E-13 90.1 -6.8 154 80-245 100-255 (306)
88 3t6q_A CD180 antigen; protein- 98.2 2.5E-08 8.7E-13 96.9 -5.9 162 80-245 324-507 (606)
89 3oja_A Leucine-rich immune mol 98.2 1.7E-08 5.9E-13 95.9 -6.9 125 104-244 119-243 (487)
90 3rgz_A Protein brassinosteroid 98.2 4.9E-08 1.7E-12 97.9 -4.2 138 80-224 199-354 (768)
91 2v9t_B SLIT homolog 2 protein 98.2 4.6E-08 1.6E-12 82.9 -3.8 133 81-225 32-164 (220)
92 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.4E-07 4.7E-12 91.1 -1.0 129 81-224 331-461 (562)
93 2xwt_C Thyrotropin receptor; s 98.2 6.6E-09 2.3E-13 89.0 -9.4 131 81-224 31-167 (239)
94 3oja_A Leucine-rich immune mol 98.2 9.8E-08 3.4E-12 90.7 -2.2 151 81-245 34-198 (487)
95 3o6n_A APL1; leucine-rich repe 98.2 1.5E-07 5E-12 86.6 -1.3 132 81-224 45-176 (390)
96 1xku_A Decorin; proteoglycan, 98.2 1.4E-07 5E-12 84.6 -1.4 83 80-167 99-182 (330)
97 3vq2_A TLR4, TOLL-like recepto 98.2 2.1E-08 7.1E-13 97.5 -7.6 37 186-223 471-507 (606)
98 1p9a_G Platelet glycoprotein I 98.2 1E-07 3.4E-12 84.3 -2.7 148 81-244 31-178 (290)
99 2z81_A CD282 antigen, TOLL-lik 98.1 1.5E-07 5.1E-12 90.3 -2.3 154 81-245 26-179 (549)
100 2z7x_B TOLL-like receptor 1, v 98.1 1.5E-06 5E-11 82.9 4.4 152 79-245 322-475 (520)
101 4eco_A Uncharacterized protein 98.1 4.3E-07 1.5E-11 89.1 0.6 109 127-244 203-336 (636)
102 2v9t_B SLIT homolog 2 protein 98.1 1.8E-07 6.2E-12 79.2 -2.0 128 105-245 32-159 (220)
103 4ecn_A Leucine-rich repeat pro 98.1 5.9E-07 2E-11 90.9 1.4 130 80-224 490-630 (876)
104 2z62_A TOLL-like receptor 4, v 98.1 2.7E-07 9.2E-12 80.6 -1.1 113 80-202 51-163 (276)
105 2v70_A SLIT-2, SLIT homolog 2 98.1 1.3E-07 4.6E-12 80.0 -3.0 134 81-226 32-166 (220)
106 3oja_B Anopheles plasmodium-re 98.1 3.2E-07 1.1E-11 89.3 -0.8 131 82-224 52-182 (597)
107 3o6n_A APL1; leucine-rich repe 98.1 4.5E-07 1.6E-11 83.2 0.1 37 186-224 293-329 (390)
108 4g8a_A TOLL-like receptor 4; l 98.1 1.4E-07 4.8E-12 91.6 -3.5 135 81-226 52-186 (635)
109 3v7d_B Cell division control p 98.1 7.9E-07 2.7E-11 82.9 1.5 49 9-58 14-63 (464)
110 3vq2_A TLR4, TOLL-like recepto 98.1 1.1E-07 3.7E-12 92.4 -4.6 133 81-224 32-164 (606)
111 1ziw_A TOLL-like receptor 3; i 98.1 2.9E-07 9.9E-12 90.7 -1.6 130 103-244 71-201 (680)
112 1xku_A Decorin; proteoglycan, 98.1 9.1E-07 3.1E-11 79.3 1.5 83 80-168 75-157 (330)
113 2z63_A TOLL-like receptor 4, v 98.1 1.5E-07 5E-12 90.6 -4.0 132 82-224 29-160 (570)
114 1ziw_A TOLL-like receptor 3; i 98.0 2.1E-07 7.3E-12 91.7 -3.5 11 81-91 405-415 (680)
115 4eco_A Uncharacterized protein 98.0 2.1E-07 7.1E-12 91.3 -3.6 86 80-168 248-342 (636)
116 3j0a_A TOLL-like receptor 5; m 98.0 7.6E-08 2.6E-12 97.5 -7.1 136 81-224 24-159 (844)
117 3bz5_A Internalin-J, INLJ; leu 98.0 3.9E-06 1.3E-10 79.0 5.1 51 186-244 146-197 (457)
118 2xot_A Amphoterin-induced prot 98.0 3.1E-07 1.1E-11 83.7 -2.5 153 81-245 39-196 (361)
119 4ecn_A Leucine-rich repeat pro 98.0 1.2E-06 4.1E-11 88.6 1.4 152 81-245 448-626 (876)
120 4g8a_A TOLL-like receptor 4; l 98.0 5.4E-07 1.9E-11 87.5 -1.2 129 105-245 52-180 (635)
121 3bz5_A Internalin-J, INLJ; leu 98.0 9.8E-06 3.4E-10 76.2 7.3 136 81-245 42-177 (457)
122 2o6r_A Variable lymphocyte rec 98.0 5.4E-07 1.8E-11 73.3 -1.2 109 105-225 28-136 (177)
123 2ft3_A Biglycan; proteoglycan, 98.0 3.1E-07 1.1E-11 82.5 -3.0 81 80-166 77-157 (332)
124 1dce_A Protein (RAB geranylger 98.0 1.2E-06 4.1E-11 84.7 0.9 125 81-220 441-567 (567)
125 2ovr_B FBW7, F-BOX/WD repeat p 98.0 2.6E-06 8.8E-11 79.1 3.1 48 7-55 16-63 (445)
126 1ds9_A Outer arm dynein; leuci 98.0 3.8E-07 1.3E-11 75.7 -2.8 125 80-219 47-180 (198)
127 1ogq_A PGIP-2, polygalacturona 97.9 1E-07 3.5E-12 85.1 -6.9 160 80-245 100-275 (313)
128 3oja_B Anopheles plasmodium-re 97.9 1.2E-06 4.1E-11 85.2 -0.0 120 106-245 233-352 (597)
129 3j0a_A TOLL-like receptor 5; m 97.9 3.8E-07 1.3E-11 92.4 -4.0 132 104-245 23-155 (844)
130 1p22_A F-BOX/WD-repeat protein 97.9 2.2E-06 7.6E-11 79.5 1.4 47 9-56 10-60 (435)
131 2v70_A SLIT-2, SLIT homolog 2 97.9 1.1E-06 3.6E-11 74.4 -1.3 130 104-245 31-160 (220)
132 2xot_A Amphoterin-induced prot 97.9 5.6E-07 1.9E-11 81.9 -3.2 138 80-226 63-202 (361)
133 2ft3_A Biglycan; proteoglycan, 97.9 9.8E-07 3.3E-11 79.2 -2.1 156 80-245 101-271 (332)
134 3rw6_A Nuclear RNA export fact 97.9 3E-05 1E-09 67.4 7.4 72 64-144 110-183 (267)
135 2wfh_A SLIT homolog 2 protein 97.8 1.8E-06 6.1E-11 71.5 -0.5 108 105-225 31-138 (193)
136 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 4.2E-06 1.4E-10 80.6 1.3 37 103-139 375-412 (562)
137 1w8a_A SLIT protein; signaling 97.8 6.9E-07 2.4E-11 73.9 -4.2 110 106-226 30-139 (192)
138 2xwt_C Thyrotropin receptor; s 97.7 1E-06 3.5E-11 75.2 -5.1 128 105-245 31-163 (239)
139 3g06_A SSPH2 (leucine-rich rep 97.6 6.2E-05 2.1E-09 73.5 5.9 53 186-245 239-291 (622)
140 2o6r_A Variable lymphocyte rec 97.6 5.8E-06 2E-10 67.0 -1.3 110 81-201 28-137 (177)
141 4b8c_D Glucose-repressible alc 97.5 5.2E-06 1.8E-10 82.6 -2.6 109 101-225 220-328 (727)
142 4b8c_D Glucose-repressible alc 97.5 1.3E-05 4.4E-10 79.8 0.1 106 124-245 218-323 (727)
143 3cvr_A Invasion plasmid antige 97.5 3.2E-05 1.1E-09 74.7 2.0 56 188-245 180-237 (571)
144 3g06_A SSPH2 (leucine-rich rep 97.5 7.3E-05 2.5E-09 72.9 4.5 77 130-226 221-297 (622)
145 2wfh_A SLIT homolog 2 protein 97.4 2.4E-05 8.2E-10 64.6 0.7 121 108-245 13-133 (193)
146 3sb4_A Hypothetical leucine ri 97.4 4.6E-05 1.6E-09 68.2 2.0 91 143-245 213-304 (329)
147 3cvr_A Invasion plasmid antige 97.3 4.7E-05 1.6E-09 73.5 1.2 39 186-226 205-243 (571)
148 3rw6_A Nuclear RNA export fact 97.3 0.00019 6.6E-09 62.3 4.4 90 149-245 163-258 (267)
149 1w8a_A SLIT protein; signaling 97.3 1.5E-05 5.2E-10 65.6 -2.5 123 108-245 11-133 (192)
150 1jl5_A Outer protein YOPM; leu 97.1 0.00012 4E-09 68.7 1.8 15 186-200 193-207 (454)
151 3sb4_A Hypothetical leucine ri 97.0 0.00012 4E-09 65.5 -0.1 81 83-166 27-134 (329)
152 3g39_A Variable lymphocyte rec 96.9 0.00014 4.6E-09 58.6 0.1 105 107-226 11-115 (170)
153 1jl5_A Outer protein YOPM; leu 96.8 0.00051 1.8E-08 64.3 3.0 34 188-224 173-206 (454)
154 2r9u_A Variable lymphocyte rec 96.8 0.0002 6.9E-09 57.9 0.1 86 130-226 33-118 (174)
155 2r9u_A Variable lymphocyte rec 96.8 0.00017 5.8E-09 58.4 -0.6 85 105-200 33-117 (174)
156 3g39_A Variable lymphocyte rec 96.6 0.00025 8.4E-09 57.1 -0.6 86 105-201 30-115 (170)
157 4ay9_X Follicle-stimulating ho 96.3 2.4E-05 8.2E-10 70.7 -9.5 37 81-117 30-66 (350)
158 2ifg_A High affinity nerve gro 96.1 0.00054 1.8E-08 61.4 -1.4 61 103-166 29-90 (347)
159 4ay9_X Follicle-stimulating ho 94.9 0.00013 4.5E-09 65.8 -10.3 11 81-91 54-64 (350)
160 2ifg_A High affinity nerve gro 94.7 0.0052 1.8E-07 54.9 -0.2 87 127-224 28-114 (347)
161 4fdw_A Leucine rich hypothetic 93.6 0.011 3.9E-07 54.2 -0.2 57 103-164 178-234 (401)
162 4fdw_A Leucine rich hypothetic 90.4 0.043 1.5E-06 50.3 -0.5 143 79-245 178-330 (401)
163 4fs7_A Uncharacterized protein 85.9 0.26 9E-06 44.6 1.7 33 103-139 228-262 (394)
164 4gt6_A Cell surface protein; l 84.8 0.89 3.1E-05 41.0 4.7 54 186-245 309-364 (394)
165 4gt6_A Cell surface protein; l 83.3 1.3 4.6E-05 39.8 5.2 54 186-245 286-341 (394)
166 4fs7_A Uncharacterized protein 82.0 0.58 2E-05 42.3 2.2 120 102-245 250-373 (394)
167 4h09_A Hypothetical leucine ri 80.2 0.6 2E-05 41.8 1.6 57 186-245 284-340 (379)
168 4h09_A Hypothetical leucine ri 69.7 0.45 1.5E-05 42.6 -2.1 118 103-241 238-359 (379)
169 3rfe_A Platelet glycoprotein I 65.8 1.7 5.8E-05 32.7 0.7 37 189-226 32-68 (130)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=2.3e-27 Score=215.39 Aligned_cols=230 Identities=24% Similarity=0.271 Sum_probs=178.6
Q ss_pred CCCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHHH--------
Q 020727 6 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLIT-------- 77 (322)
Q Consensus 6 ~~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~-------- 77 (322)
+.+.|++||+|++.+||++|+..++++ +++|||+|+.++.+|.+|+.+++..... .+..+..++...+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~-~~~vc~~W~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~l~~L~l~~n~ 81 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNL--HPDVTGRLLSQGVIAFRCPRSF 81 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHH-TTSSCHHHHHHHTCSTTSSEEECTTCBC--CHHHHHHHHHTTCSEEECTTCE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhcCchhheeeccccccC--CHHHHHhhhhccceEEEcCCcc
Confidence 468899999999999999999999998 7999999999999999999999987543 23333322111000
Q ss_pred --------hcCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHH
Q 020727 78 --------RSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL 148 (322)
Q Consensus 78 --------r~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l 148 (322)
....++++|+++++. ++..+..+...+++|++|+|.+|.+++.....+.. +++|++|++++|..+++.++
T Consensus 82 l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 82 MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHH
T ss_pred ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHH
Confidence 012567888887764 44557777788999999999999999887777654 89999999999778999888
Q ss_pred HHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCC-CCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020727 149 EAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP-KLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWD 225 (322)
Q Consensus 149 ~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p-~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~ 225 (322)
..+...|++|++|.++.+. .+.+.++..+...+| +|++|+|++| .+++.++..++..+++|++|++++|..
T Consensus 161 ~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCF------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp HHHHHHCTTCCEEECCCCT------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred HHHHhcCCCCCEEcCCCCC------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 8888899999999765441 344455666667899 9999999999 688888888888999999999999976
Q ss_pred cCCChHHHHhcCCCCeeeCC
Q 020727 226 VKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 226 ~~~~~~~l~~~~~~Lk~L~~ 245 (322)
++.........+++|++|.+
T Consensus 235 l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEEC
T ss_pred CCHHHHHHHhCCCCCCEeeC
Confidence 64333333467788988864
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=7.9e-23 Score=199.06 Aligned_cols=220 Identities=20% Similarity=0.290 Sum_probs=159.5
Q ss_pred CCcccCCHHHHHHHHccCC-hHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEE
Q 020727 8 RHWDELIPDALGLIFRNLS-LQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKL 86 (322)
Q Consensus 8 ~~w~~LP~eiL~~IF~~L~-~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L 86 (322)
..|++||+|+|.+||+||+ .+++.+ +++|||+|+.+. +..|+.+++...... .+. .+..+ .+.+++|
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~-~s~vck~W~~~~--~~~~~~l~~~~~~~~-~~~-------~~~~~-~~~L~~L 71 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNS-VSLVCKSWYEIE--RWCRRKVFIGNCYAV-SPA-------TVIRR-FPKVRSV 71 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHH-HHTSCHHHHHHH--HHHCCEEEESSTTSS-CHH-------HHHHH-CTTCCEE
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHH-HHHHHHHHHHhh--hhhceEEeecccccc-CHH-------HHHhh-CCCceEE
Confidence 5799999999999999999 999888 799999999993 356777777654321 121 12223 4669999
Q ss_pred EecCCCC---------------hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 020727 87 CVSGLHN---------------DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI 151 (322)
Q Consensus 87 ~l~~~~~---------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l 151 (322)
.++++.. ...+..+...+++|++|+|++|.+++..+..++..+++|++|++++|..++..++..+
T Consensus 72 ~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 151 (594)
T 2p1m_B 72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151 (594)
T ss_dssp EEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH
T ss_pred eccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH
Confidence 9987641 2346677788999999999999999999999988899999999999888999999999
Q ss_pred HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc--cCHHHHHHHHhcCCCCCEEeecCCCCcCCC
Q 020727 152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLD 229 (322)
Q Consensus 152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~--i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~ 229 (322)
+..|++|++|.+..+.+.-.+ ...+..+...+++|++|+|++|. ++...+..++..|++|++|+|++|..++ .
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~ 226 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVS----GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-K 226 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCC----GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-H
T ss_pred HHhCCCCCEEeCcCCccCCcc----hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-H
Confidence 999999999988766532211 12233444567888888888875 7777777777778888888888874442 1
Q ss_pred hHHHHhcCCCCeeeC
Q 020727 230 DKFMKGNFPNLKVLG 244 (322)
Q Consensus 230 ~~~l~~~~~~Lk~L~ 244 (322)
-..+...+++|++|.
T Consensus 227 l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 227 LATLLQRAPQLEELG 241 (594)
T ss_dssp HHHHHHHCTTCSEEE
T ss_pred HHHHHhcCCcceEcc
Confidence 123345556666653
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=4.1e-21 Score=186.99 Aligned_cols=226 Identities=16% Similarity=0.196 Sum_probs=165.4
Q ss_pred CCCCcCCCCcc----cCCHHHHHHHHccC-ChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHH
Q 020727 1 MEGESEFRHWD----ELIPDALGLIFRNL-SLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEML 75 (322)
Q Consensus 1 ~~~~~~~~~w~----~LP~eiL~~IF~~L-~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l 75 (322)
|++. +++++. +||+|+|.+||+|| +.+++.+ ++.|||+|+.+.. ..++.+.+...... . ...+
T Consensus 1 m~~~-~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~-~s~vck~W~~~~~--~~~~~l~~~~~~~~-~-------~~~~ 68 (592)
T 3ogk_B 1 MEDP-DIKRCKLSCVATVDDVIEQVMTYITDPKDRDS-ASLVCRRWFKIDS--ETREHVTMALCYTA-T-------PDRL 68 (592)
T ss_dssp ------------CCCCCGGGTHHHHHTTCCCHHHHHH-HTTSCHHHHHHHH--HHCCEEEESCGGGS-C-------HHHH
T ss_pred CCCh-hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHhhh--ccccEEEEeecccc-C-------hHHH
Confidence 4443 344444 89999999999999 8999888 7999999999954 22233333221110 1 1223
Q ss_pred HHhcCCCeeEEEecCCCC---------------hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCC-ccEEeccC
Q 020727 76 ITRSSGSLRKLCVSGLHN---------------DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSA-VTFLDLSY 139 (322)
Q Consensus 76 ~~r~~~~l~~L~l~~~~~---------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~-L~~L~l~~ 139 (322)
..+ .+.+++|+++++.. ...+..++..+++|++|+|++|.+++..+..++..+++ |++|++++
T Consensus 69 ~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 69 SRR-FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHH-CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHh-CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 333 45599999977532 34677778899999999999999999999988887777 99999999
Q ss_pred CCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccC---HHHHHHHHhcCCCCC
Q 020727 140 CSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS---TEIVLKILSSCALLE 216 (322)
Q Consensus 140 c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~---~~~l~~i~~~~~~L~ 216 (322)
|..++..++..++..||+|++|++..+.+.-.+ ...+..+...+|+|++|+|+++.++ ..++..++..|++|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD----GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC----SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcc----hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 988889999999999999999988766542111 2335667778999999999998765 778888899999999
Q ss_pred EEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 217 FLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 217 ~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
+|+|++|.... -......+++|++|..
T Consensus 224 ~L~L~~~~~~~--l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 224 SVKVGDFEILE--LVGFFKAAANLEEFCG 250 (592)
T ss_dssp EEECSSCBGGG--GHHHHHHCTTCCEEEE
T ss_pred EEeccCccHHH--HHHHHhhhhHHHhhcc
Confidence 99999986442 2344567788887754
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=4.7e-14 Score=130.23 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=68.7
Q ss_pred CCCCEEecCCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHHHHHHh----cCCCcceeeccccccCCCCCCCCc
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQD 177 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~l~~l~~----~c~~L~~L~l~~~~l~~~~~~~~~ 177 (322)
++|++|.|++|.+++.++..++ ..+++|++|++++ +.+++.++.+++. .+++|+.|.++.+ .+.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-------~l~~ 230 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDN-------TFTH 230 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS-SCCCHHHHHHHHHTTGGGCTTCCEEECCSS-------CCHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC-CCCCHhHHHHHHHHHhhcCCCccEEECcCC-------CCCc
Confidence 5555555555555544444322 2445555666555 3555555443333 4555555544333 2222
Q ss_pred hHHHHH---HhcCCCCCEEEecCcccCHHHHHHHHhc-----CCCCCEEeecCCCCcCCCh-----HHHHhcCCCCeeeC
Q 020727 178 DEANAI---ASTMPKLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGCWDVKLDD-----KFMKGNFPNLKVLG 244 (322)
Q Consensus 178 ~~~~~l---~~~~p~L~~L~L~~~~i~~~~l~~i~~~-----~~~L~~L~L~~c~~~~~~~-----~~l~~~~~~Lk~L~ 244 (322)
.++..+ ...+|+|++|+|++|.+++.+...+... +++|++|+|++|. ++..+ ..+...+++|++|.
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEE
Confidence 222222 2456777777777777777665544432 6777777777774 32111 12234567777774
Q ss_pred C
Q 020727 245 P 245 (322)
Q Consensus 245 ~ 245 (322)
+
T Consensus 310 l 310 (386)
T 2ca6_A 310 L 310 (386)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1e-13 Score=127.99 Aligned_cols=157 Identities=14% Similarity=0.087 Sum_probs=112.9
Q ss_pred CCCeeEEEecCCC-Ch---HHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcC------------CCccEEeccCCCCC
Q 020727 80 SGSLRKLCVSGLH-ND---MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRL------------SAVTFLDLSYCSKI 143 (322)
Q Consensus 80 ~~~l~~L~l~~~~-~~---~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~------------~~L~~L~l~~c~~i 143 (322)
..+|++|++++.. +. ..+......+++|++|+|++|.+++.+...++..+ ++|++|++++ +.+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l 171 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRL 171 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCC
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCC
Confidence 5779999998754 22 23444456799999999999998877665555433 8999999998 578
Q ss_pred CHHHHHHHH---hcCCCcceeeccccccCCCCCCCCchHHHHHHh----cCCCCCEEEecCcccCHHHHHHH---HhcCC
Q 020727 144 GAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKI---LSSCA 213 (322)
Q Consensus 144 ~~~~l~~l~---~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~----~~p~L~~L~L~~~~i~~~~l~~i---~~~~~ 213 (322)
++.++..++ ..+++|++|.++.+ .+.+.++..++. .+++|++|+|++|.+++.++..+ +..++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n-------~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQN-------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSS-------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCC-------CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 877766544 37889999976544 344555544443 78999999999999987665555 45789
Q ss_pred CCCEEeecCCCCcCCCh-HHH---H--hcCCCCeeeCC
Q 020727 214 LLEFLDLRGCWDVKLDD-KFM---K--GNFPNLKVLGP 245 (322)
Q Consensus 214 ~L~~L~L~~c~~~~~~~-~~l---~--~~~~~Lk~L~~ 245 (322)
+|++|+|++|. ++..+ ..+ . ..+++|++|.+
T Consensus 245 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 245 NLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp TCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred CcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEEC
Confidence 99999999996 43222 112 2 23899999975
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=1.8e-14 Score=139.95 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=103.2
Q ss_pred cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCC----------C-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHH
Q 020727 79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR----------S-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPA 147 (322)
Q Consensus 79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~----------~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~ 147 (322)
.+++|+.|++++...+..+..++..|++|++|+|.+ | .+++.++..++..|++|++|+++ |+.+++.+
T Consensus 316 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~ 394 (592)
T 3ogk_B 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNES 394 (592)
T ss_dssp TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHH
T ss_pred hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHH
Confidence 355677777765555666666677777788888773 4 77777777777777778888774 57777777
Q ss_pred HHHHHhcCCCcceeeccccc----c----------------------CCCCC--CCCchHHHHHHhcCCCCCEEEecCcc
Q 020727 148 LEAIGKHCKLLVVLCRNMHP----L----------------------DTADK--LSQDDEANAIASTMPKLKRLEMAYHV 199 (322)
Q Consensus 148 l~~l~~~c~~L~~L~l~~~~----l----------------------~~~~~--~~~~~~~~~l~~~~p~L~~L~L~~~~ 199 (322)
+..+++.|++|+.|++..+. + ++..| .+.+..+..++..+|+|++|+|++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 77777777777777774211 1 01001 13344455565566677777777777
Q ss_pred cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh-HHHHhcCCCCeee
Q 020727 200 ISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVL 243 (322)
Q Consensus 200 i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~-~~l~~~~~~Lk~L 243 (322)
+++.++..++.+|++|++|+|++|. ++..+ ..+...+++|++|
T Consensus 475 l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 475 ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 7766666666667777777777765 42111 2234456666666
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=5.7e-14 Score=126.88 Aligned_cols=160 Identities=20% Similarity=0.323 Sum_probs=126.8
Q ss_pred cCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 020727 79 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK 156 (322)
Q Consensus 79 ~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~ 156 (322)
..++|++|+++++. ++.....++ .+++|++|+|.+| .+++.++..+...+++|++|++++|..+++.++..+...+|
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 45789999999875 445555554 4999999999999 89999899988999999999999976899988888888899
Q ss_pred -CcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHH
Q 020727 157 -LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 234 (322)
Q Consensus 157 -~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~ 234 (322)
+|++|.++.+.. .+.+..+..+...+|+|++|+|++|. +++..+..+ ..+++|++|++++|..++..+....
T Consensus 195 ~~L~~L~l~~~~~-----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 195 ETITQLNLSGYRK-----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp TTCCEEECCSCGG-----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred cCCCEEEeCCCcc-----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 999998765432 23445666676789999999999998 777766644 5789999999999975642222234
Q ss_pred hcCCCCeeeCC
Q 020727 235 GNFPNLKVLGP 245 (322)
Q Consensus 235 ~~~~~Lk~L~~ 245 (322)
..+++|++|.+
T Consensus 269 ~~~~~L~~L~l 279 (336)
T 2ast_B 269 GEIPTLKTLQV 279 (336)
T ss_dssp GGCTTCCEEEC
T ss_pred hcCCCCCEEec
Confidence 67899998854
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=2.4e-13 Score=131.97 Aligned_cols=141 Identities=15% Similarity=0.168 Sum_probs=77.9
Q ss_pred cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecC--------C-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH
Q 020727 79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLP--------R-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE 149 (322)
Q Consensus 79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~--------~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~ 149 (322)
.+++|++|+++++.++..+..++..+++|++|+|. . +.+++.++..++..|++|++|.++ |+.+++.++.
T Consensus 312 ~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~ 390 (594)
T 2p1m_B 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALI 390 (594)
T ss_dssp TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHH
T ss_pred cCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHH
Confidence 34667777777665566666666667777777772 2 267777777776666777777544 4667777776
Q ss_pred HHHhcCCCcceeeccccccCCCCC-CCC----chHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020727 150 AIGKHCKLLVVLCRNMHPLDTADK-LSQ----DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 150 ~l~~~c~~L~~L~l~~~~l~~~~~-~~~----~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c 223 (322)
.+++.||+|+.|++..... .+| .+. +.++.++...|++|++|+|++ .+++.++..+...+++|+.|+|++|
T Consensus 391 ~l~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEP--KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHCTTCCEEEEEESST--TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHhhCCCcceeEeecccC--CCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence 6666667777776651100 000 011 223334444444444444444 4444444444444444444444444
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=3.5e-13 Score=109.94 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020727 106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 185 (322)
Q Consensus 106 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~ 185 (322)
+|++|+|++|.|++.++..+ ..|++|++|+|++|..+++.++..+++. ..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~-----------------------------~~ 111 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL-----------------------------EN 111 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC-----------------------------HH
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc-----------------------------cc
Confidence 57777777777777777766 4677777777777777777776666531 00
Q ss_pred cCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh---HHHHhcCCCCee
Q 020727 186 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKV 242 (322)
Q Consensus 186 ~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~---~~l~~~~~~Lk~ 242 (322)
.+++|++|+|++|. ||+.++..+. .|++|++|+|++|..++..+ ..+.+..|++++
T Consensus 112 ~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 112 LQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred ccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 24678888888885 8999888775 68999999999998887433 345677888775
No 10
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.37 E-value=3.2e-13 Score=88.09 Aligned_cols=50 Identities=38% Similarity=0.633 Sum_probs=40.1
Q ss_pred cCCCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeec
Q 020727 5 SEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEID 55 (322)
Q Consensus 5 ~~~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~ 55 (322)
.+...|..||+|++.+||++|+..++.+ +++|||+|+.++.++.+|+.+|
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~-~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC----
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCChHHHHhcC
Confidence 3467899999999999999999999998 7999999999999999999875
No 11
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.36 E-value=4.8e-13 Score=109.14 Aligned_cols=103 Identities=15% Similarity=0.263 Sum_probs=80.1
Q ss_pred CCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhcC
Q 020727 81 GSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHC 155 (322)
Q Consensus 81 ~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~l~~l~~~c 155 (322)
-.|++|++++|. ++..+..+ ..|++|++|+|++| .|||.++..++.. +++|++|+|++|..+|+.++.+++ .|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 469999999876 67777776 57999999999999 8999999999873 679999999999999999998886 46
Q ss_pred CCcceeeccccccCCCCCCCCchH--HHHHHhcCCCCC
Q 020727 156 KLLVVLCRNMHPLDTADKLSQDDE--ANAIASTMPKLK 191 (322)
Q Consensus 156 ~~L~~L~l~~~~l~~~~~~~~~~~--~~~l~~~~p~L~ 191 (322)
++|++|.+..++. +++.+ ...+.+.+|+++
T Consensus 139 ~~L~~L~L~~c~~------Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPG------VKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTT------CCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCC------CCchHHHHHHHHHHCCCcE
Confidence 7777776554332 33433 344555666654
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2.1e-11 Score=112.01 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=113.7
Q ss_pred eeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh--
Q 020727 51 WQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG-- 127 (322)
Q Consensus 51 w~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~-- 127 (322)
-+.+++..... ...... .+...+...+..++.|+|+++. ++..+..++..+++|+.|+|++|.+++.++..++.
T Consensus 74 L~~L~Ls~n~l--~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 74 LRQLNLAGVRM--TPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp CCEEECTTSCC--CHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred CCEEEecCCCC--CHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34566655432 222222 2333334445678999998765 56667777777778999999999888888777654
Q ss_pred --cCCCccEEeccCCCCCCHHHHHHHH---hcCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcc
Q 020727 128 --RLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHV 199 (322)
Q Consensus 128 --~~~~L~~L~l~~c~~i~~~~l~~l~---~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~ 199 (322)
..++|++|+|++ +.+++.++..++ +.+++|++|+++.+ .+.+.++..++ ..+++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-------~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSN-NPLTAAGVAVLMEGLAGNTSVTHLSLLHT-------GLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCS-SCCHHHHHHHHHHHHHTCSSCCEEECTTS-------SCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCC-CCCChHHHHHHHHHHhcCCCcCEEeCCCC-------CCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 357899999998 478887776665 45788888866544 34445554443 356789999999999
Q ss_pred cCHHHHHHHHh---cCCCCCEEeecCCCCcC
Q 020727 200 ISTEIVLKILS---SCALLEFLDLRGCWDVK 227 (322)
Q Consensus 200 i~~~~l~~i~~---~~~~L~~L~L~~c~~~~ 227 (322)
|++.++..++. .+++|++|+|++|. ++
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~ 252 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE-LS 252 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS-CC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC-CC
Confidence 98887766654 56889999999885 53
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.7e-11 Score=112.60 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=119.9
Q ss_pred CCCeeEEEecCCC-ChHHHHHHHH----hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh-
Q 020727 80 SGSLRKLCVSGLH-NDMMFSLIAE----NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK- 153 (322)
Q Consensus 80 ~~~l~~L~l~~~~-~~~~l~~l~~----~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~- 153 (322)
...++.|+++++. +......++. .+++|++|+|++|.+++.++..++..+++|++|+|++ +.+++.++..++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHHH
Confidence 4569999998865 4433333333 2469999999999999999999998889999999999 5899988887764
Q ss_pred ---cCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHHHHHHH---hcCCCCCEEeecCCC
Q 020727 154 ---HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCW 224 (322)
Q Consensus 154 ---~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~---~~~~~L~~L~L~~c~ 224 (322)
.+++|+.|.++.+. +.+.++..++ ..+++|++|+|++|.|++.++..+. ..+++|+.|+|++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~-------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSC-------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC-------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 46889999776554 4445555443 4689999999999999998877665 456899999999995
Q ss_pred CcCCCh-HHH---HhcCCCCeeeCC
Q 020727 225 DVKLDD-KFM---KGNFPNLKVLGP 245 (322)
Q Consensus 225 ~~~~~~-~~l---~~~~~~Lk~L~~ 245 (322)
++..+ ..+ ...++.|++|.+
T Consensus 223 -i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 223 -AGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEec
Confidence 54232 222 456789999965
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=1.1e-10 Score=109.85 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=111.5
Q ss_pred CCCeeEEEecCCC-ChH---HHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCC----CccEEeccCCCCCCHHHHHH-
Q 020727 80 SGSLRKLCVSGLH-NDM---MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALEA- 150 (322)
Q Consensus 80 ~~~l~~L~l~~~~-~~~---~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~----~L~~L~l~~c~~i~~~~l~~- 150 (322)
.++++.|+++++. ++. .+......+++|++|+|++|.+++.++..++..++ +|++|++++| .+++.++..
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHH
Confidence 4569999998875 333 34444566899999999999999988888888877 7999999984 788765443
Q ss_pred --HHhcCCCcceeeccccccCCCCCCCCchHHHHHHh----cCCCCCEEEecCcccCHHHH---HHHHhcCCCCCEEeec
Q 020727 151 --IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIV---LKILSSCALLEFLDLR 221 (322)
Q Consensus 151 --l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~----~~p~L~~L~L~~~~i~~~~l---~~i~~~~~~L~~L~L~ 221 (322)
....+++|++|.++.+. +.+.++..++. ..++|++|+|++|.+++.++ ...+..+++|++|+++
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~-------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNL-------LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp HHHTTSCTTCCEEECCSSB-------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHccCCceeEEECCCCc-------CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 34567889999765443 33445554443 35689999999998887654 3445578999999999
Q ss_pred CCCCcCCCh-HHH----HhcCCCCeeeCC
Q 020727 222 GCWDVKLDD-KFM----KGNFPNLKVLGP 245 (322)
Q Consensus 222 ~c~~~~~~~-~~l----~~~~~~Lk~L~~ 245 (322)
+|. ++..+ ..+ ....++|++|.+
T Consensus 179 ~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 179 NND-INEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp SSB-CHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred CCC-cchHHHHHHHHHHhcCCCCceEEEc
Confidence 986 43222 222 224668998865
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=4.2e-10 Score=105.74 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=108.1
Q ss_pred CCCeeEEEecCCC-ChHHHHHHHHhCC----CCCEEecCCCCCCHHH---HHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 020727 80 SGSLRKLCVSGLH-NDMMFSLIAENAG----SLQTLRLPRSEMSDSI---VAQIAGRLSAVTFLDLSYCSKIGAPALEAI 151 (322)
Q Consensus 80 ~~~l~~L~l~~~~-~~~~l~~l~~~~~----~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l 151 (322)
.+.+++|++++.. ++..+..++..++ +|++|+|++|.+++.+ +......+++|++|++++ +.+++.++..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l 133 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLL 133 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHH
Confidence 5679999998865 4556667777666 7999999999999754 344446789999999999 57888888777
Q ss_pred Hhc----CCCcceeeccccccCCCCCCCCchHHHHH---HhcCCCCCEEEecCcccCHHHHHHHHh----cCCCCCEEee
Q 020727 152 GKH----CKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEMAYHVISTEIVLKILS----SCALLEFLDL 220 (322)
Q Consensus 152 ~~~----c~~L~~L~l~~~~l~~~~~~~~~~~~~~l---~~~~p~L~~L~L~~~~i~~~~l~~i~~----~~~~L~~L~L 220 (322)
+.. .++|++|.++.+.+ ...++..+ ...+++|++|+|++|.+++.++..+.. ..++|++|++
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l-------~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSL-------SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCC-------BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHhcCCCcceEEECCCCCC-------CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 664 45799997765533 33332222 235778888888888777776666654 2457788888
Q ss_pred cCCCCcCCCh----HHHHhcCCCCeeeCC
Q 020727 221 RGCWDVKLDD----KFMKGNFPNLKVLGP 245 (322)
Q Consensus 221 ~~c~~~~~~~----~~l~~~~~~Lk~L~~ 245 (322)
++|. ++..+ ......+++|++|.+
T Consensus 207 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 207 ESCG-VTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp TTSC-CBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred cCCC-CcHHHHHHHHHHHHhCCCccEEec
Confidence 7774 33222 122346677777754
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.18 E-value=6.8e-10 Score=91.77 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=94.8
Q ss_pred hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhc---CCCcceeecccc
Q 020727 94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMH 166 (322)
Q Consensus 94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~l~~l~~~---c~~L~~L~l~~~ 166 (322)
...+..+...+++|++|+|++| .+++.++..++.. .++|++|+|++ +.+++.+..+++.. .++|++|.++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~-- 101 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVE-- 101 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECC--
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECc--
Confidence 4456666777899999999998 9999888776654 57899999998 58898887766553 4778888654
Q ss_pred ccCCCCCCCCchHHHHHHh---cCCCCCEEEe--cCcccCHHHHHHHHh---cCCCCCEEeecCCC
Q 020727 167 PLDTADKLSQDDEANAIAS---TMPKLKRLEM--AYHVISTEIVLKILS---SCALLEFLDLRGCW 224 (322)
Q Consensus 167 ~l~~~~~~~~~~~~~~l~~---~~p~L~~L~L--~~~~i~~~~l~~i~~---~~~~L~~L~L~~c~ 224 (322)
++.+.+.++.+++. ..++|++|+| ++|.|++.+...++. ..+.|++|+|++|.
T Consensus 102 -----~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 102 -----SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -----SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -----CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 44455677766654 4678999999 889999988666654 56899999999885
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.09 E-value=5e-10 Score=102.32 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCeeEEEecCCC-C---hHHHHHHHHhC-CCCCEEecCCCCCCHHHHHHHHh---c-CCCccEEeccCCCCCCHHHHHHH
Q 020727 81 GSLRKLCVSGLH-N---DMMFSLIAENA-GSLQTLRLPRSEMSDSIVAQIAG---R-LSAVTFLDLSYCSKIGAPALEAI 151 (322)
Q Consensus 81 ~~l~~L~l~~~~-~---~~~l~~l~~~~-~~L~~L~L~~~~i~~~~l~~l~~---~-~~~L~~L~l~~c~~i~~~~l~~l 151 (322)
..|+.|+++++. + ...+......+ ++|+.|+|++|.+++.+...++. . +++|++|++++ +.+++.+...+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHH
Confidence 456666665543 1 12222222333 56666666666544433333322 2 24666666665 35554333332
Q ss_pred Hh---cCC-CcceeeccccccCCCCCCCCchHHHHHHhcC-CCCCEEEecCcccCHHHHHHHHh---c-CCCCCEEeecC
Q 020727 152 GK---HCK-LLVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILS---S-CALLEFLDLRG 222 (322)
Q Consensus 152 ~~---~c~-~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~-p~L~~L~L~~~~i~~~~l~~i~~---~-~~~L~~L~L~~ 222 (322)
+. .++ +|++|.++.+.+.-.+ ...+......+ ++|++|+|++|.+++.++..+.. . +++|++|+|++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKN----CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSC----HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHhcCCccccEeeecCCCCchhh----HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 22 222 5666655444331111 11111122234 36666666666655533332222 2 34666666666
Q ss_pred CC
Q 020727 223 CW 224 (322)
Q Consensus 223 c~ 224 (322)
|.
T Consensus 235 N~ 236 (362)
T 3goz_A 235 NC 236 (362)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=5.9e-11 Score=94.30 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=81.1
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.++|+.|++++|.+++..+......+++|+.|++++| .++.. .....+++|+.|.++.+.+. .. ....
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~-------~~-~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVS-------GG-LEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCC-------SC-THHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCccc-------ch-HHHH
Confidence 3567777777776653333334455677777777774 55443 22345677777766555431 11 2233
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeCC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~~ 245 (322)
...+++|++|++++|.++.......+..+++|++|++++|....... ......+++|++|..
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 34688888888888888775444556678888888888885443222 135677888888843
No 19
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=6.7e-09 Score=94.78 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=113.6
Q ss_pred CCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCC-C---hHHHHHHHHh-CCCCCEEecCCCCCCHHH-
Q 020727 48 PYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLH-N---DMMFSLIAEN-AGSLQTLRLPRSEMSDSI- 121 (322)
Q Consensus 48 ~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~-~---~~~l~~l~~~-~~~L~~L~L~~~~i~~~~- 121 (322)
+..-+.+++....-. ......+... +......+++|+++++. + ...+..+... +++|++|+|++|.+++.+
T Consensus 21 ~~~L~~L~Ls~n~l~--~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLY--SISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGG--GSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCC--hHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 443566777654321 1111122222 22223379999998765 2 2333333333 489999999999766543
Q ss_pred --HHHHHhcC-CCccEEeccCCCCCCHHHHHHHHhc----CCCcceeeccccccCCCCCCCCchHHHHH---HhcCC-CC
Q 020727 122 --VAQIAGRL-SAVTFLDLSYCSKIGAPALEAIGKH----CKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMP-KL 190 (322)
Q Consensus 122 --l~~l~~~~-~~L~~L~l~~c~~i~~~~l~~l~~~----c~~L~~L~l~~~~l~~~~~~~~~~~~~~l---~~~~p-~L 190 (322)
+......+ ++|++|++++ +.++..+...++.. +++|++|.++.+.+. +.++..+ ...++ +|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG-------IKSSDELIQILAAIPANV 169 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG-------GSCHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC-------HHHHHHHHHHHhcCCccc
Confidence 44444445 8999999998 56777666655443 579999987665443 2233222 23455 99
Q ss_pred CEEEecCcccCHHHH---HHHHhcC-CCCCEEeecCCCCcCCChH----HHHhcCCCCeeeCC
Q 020727 191 KRLEMAYHVISTEIV---LKILSSC-ALLEFLDLRGCWDVKLDDK----FMKGNFPNLKVLGP 245 (322)
Q Consensus 191 ~~L~L~~~~i~~~~l---~~i~~~~-~~L~~L~L~~c~~~~~~~~----~l~~~~~~Lk~L~~ 245 (322)
++|+|++|.+++.+. ...+..+ ++|++|+|++|........ .+....++|++|.+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 999999998765444 4444566 4999999999963321222 22333568999865
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.99 E-value=1.3e-10 Score=92.30 Aligned_cols=138 Identities=15% Similarity=0.186 Sum_probs=96.7
Q ss_pred HHHHHhcCCCeeEEEecCCCCh-HHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 020727 73 EMLITRSSGSLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI 151 (322)
Q Consensus 73 ~~l~~r~~~~l~~L~l~~~~~~-~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l 151 (322)
........+.++.|+++++.-. ..+......+++|+.|++++|.++.. .....+++|++|++++ +.++.. +...
T Consensus 9 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~-n~i~~~-~~~~ 83 (149)
T 2je0_A 9 LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSD-NRVSGG-LEVL 83 (149)
T ss_dssp HHHTTCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCS-SCCCSC-THHH
T ss_pred HHHhcCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCC-Ccccch-HHHH
Confidence 3344445567999999876432 22233345689999999999977654 3445689999999999 566653 4455
Q ss_pred HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHH--HHHHhcCCCCCEEeecC
Q 020727 152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRG 222 (322)
Q Consensus 152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l--~~i~~~~~~L~~L~L~~ 222 (322)
...+++|+.|.++.+.+ ..-........+|+|++|++++|.++.... ...+..+++|+.|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 56689999998765543 232222334589999999999998765432 24677899999999863
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.93 E-value=1.3e-10 Score=94.31 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=75.4
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.++|+.|++++|.+++..+......+++|++|++++| .++.. .....+++|+.|.++.+.+.- . ...+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~l~~-------~-~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENRIFG-------G-LDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCCCCS-------C-CCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCcCch-------H-HHHH
Confidence 3567777777776653333333445677777777774 45433 223346777777666554321 0 1223
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeCC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~~ 245 (322)
...+++|++|+|++|.++.......+..+++|++|++++|....... ......+++|++|..
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 33577888888888877653222334567888888888875443222 134567777777743
No 22
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=2.3e-08 Score=82.44 Aligned_cols=127 Identities=9% Similarity=0.121 Sum_probs=94.8
Q ss_pred HHHHHHHhcCCCeeEEEecCC-C-ChHHHHHHH---HhCCCCCEEecCCCCCCHHHHHHHHhc---CCCccEEeccCCCC
Q 020727 71 MVEMLITRSSGSLRKLCVSGL-H-NDMMFSLIA---ENAGSLQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSK 142 (322)
Q Consensus 71 ~l~~l~~r~~~~l~~L~l~~~-~-~~~~l~~l~---~~~~~L~~L~L~~~~i~~~~l~~l~~~---~~~L~~L~l~~c~~ 142 (322)
.+..++.. ...+++|+|+++ . ++.....++ ..+++|++|+|++|.+++.+...++.. .++|++|+|++ +.
T Consensus 27 ~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~ 104 (185)
T 1io0_A 27 TLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NF 104 (185)
T ss_dssp HHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred HHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence 34444433 567999999886 4 555444443 457899999999999999988776654 48999999998 69
Q ss_pred CCHHHHHHHHhc---CCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHH
Q 020727 143 IGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEI 204 (322)
Q Consensus 143 i~~~~l~~l~~~---c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~ 204 (322)
+++.++.+++.. ++.|++|.++. .++.+.+.++.+++ +..++|++|+|++|.+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~-----~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDN-----QSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCC-----CSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecC-----CCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 999998888765 46799997721 33445566665554 35789999999999998876
No 23
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.4e-09 Score=99.33 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=102.6
Q ss_pred CCeeEEEecCCCC---------hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH
Q 020727 81 GSLRKLCVSGLHN---------DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA 150 (322)
Q Consensus 81 ~~l~~L~l~~~~~---------~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~ 150 (322)
++|+.|.+..... ...+..+...+|+|++|.|.++ .+.- ..+ ..++|++|+|.. ..++..++..
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~-~~l~~~~l~~ 212 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIIS-GGLPDSVVED 212 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEEC-SBCCHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEec-CCCChHHHHH
Confidence 4699998865321 1135566778999999999887 3321 111 368999999997 4788999888
Q ss_pred HHh-cCCCcceeeccccccCCCCCCCCchHHHH-HH-hcCCCCCEEEecCcccCHHHHHHHHh--cCCCCCEEeecCCCC
Q 020727 151 IGK-HCKLLVVLCRNMHPLDTADKLSQDDEANA-IA-STMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGCWD 225 (322)
Q Consensus 151 l~~-~c~~L~~L~l~~~~l~~~~~~~~~~~~~~-l~-~~~p~L~~L~L~~~~i~~~~l~~i~~--~~~~L~~L~L~~c~~ 225 (322)
++. .+|+|++|.|........+... -..+.. +. ..+|+|++|+|.+|.+++.+...++. .+|+|++|+|+.|.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~-~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGD-MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSC-GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHccCCCCcEEEEeccccccccchh-HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 875 6899999988542211112110 011111 11 35899999999999998877776765 56899999998774
Q ss_pred cCCCh-HHHH---hcCCCCeeeCC
Q 020727 226 VKLDD-KFMK---GNFPNLKVLGP 245 (322)
Q Consensus 226 ~~~~~-~~l~---~~~~~Lk~L~~ 245 (322)
++..+ ..+. ..+++|+.|.+
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred CChHHHHHHHhhcccCCcceEEEC
Confidence 53222 2232 45677777744
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=9.6e-10 Score=91.60 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=86.7
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020727 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.++.|++++..-.. +.. ...+++|+.|.+++|.++.. . ....+++|++|++++ +.++......+. .+++|+.|
T Consensus 45 ~L~~L~l~~n~i~~-l~~-l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~-~l~~L~~L 117 (197)
T 4ezg_A 45 SLTYITLANINVTD-LTG-IEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMG-KDVTSDKIPNLS-GLTSLTLL 117 (197)
T ss_dssp TCCEEEEESSCCSC-CTT-GGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEEC-TTCBGGGSCCCT-TCTTCCEE
T ss_pred CccEEeccCCCccC-hHH-HhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeEC-CccCcccChhhc-CCCCCCEE
Confidence 47777776543111 111 34577888888888755432 1 234568888888887 466654444433 46778888
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
.++.+.+ .+.....+. .+++|++|+|++|. +++-. .+..+++|+.|++++|..... . ....+++|
T Consensus 118 ~Ls~n~i-------~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L 183 (197)
T 4ezg_A 118 DISHSAH-------DDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY--R-GIEDFPKL 183 (197)
T ss_dssp ECCSSBC-------BGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCC--T-TGGGCSSC
T ss_pred EecCCcc-------CcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcCh--H-HhccCCCC
Confidence 6654433 233344444 67888888888886 65532 355778888888888753321 1 34567777
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
++|..
T Consensus 184 ~~L~l 188 (197)
T 4ezg_A 184 NQLYA 188 (197)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 77743
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=2.3e-10 Score=92.78 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=98.4
Q ss_pred HHHhcCCCeeEEEecCCCCh-HHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh
Q 020727 75 LITRSSGSLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK 153 (322)
Q Consensus 75 l~~r~~~~l~~L~l~~~~~~-~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~ 153 (322)
........++.|+++++.-. ..+......+++|+.|+|++|.++.. .....+++|++|++++ +.++.. +..+..
T Consensus 18 ~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~ 92 (168)
T 2ell_A 18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSE-NRIFGG-LDMLAE 92 (168)
T ss_dssp HTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEES-CCCCSC-CCHHHH
T ss_pred hccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcC-CcCchH-HHHHHh
Confidence 33445577999999876422 22233345689999999999977654 3445679999999999 466553 445556
Q ss_pred cCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHH--HHHHhcCCCCCEEeecCCCCc
Q 020727 154 HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 154 ~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l--~~i~~~~~~L~~L~L~~c~~~ 226 (322)
.+++|+.|.++.+.+. +. ..... ...+++|++|+|++|.++.... ...+..+++|++|++++|...
T Consensus 93 ~l~~L~~L~Ls~N~l~--~~----~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLK--DI----STLEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HCTTCCEEECBSSSCC--SS----GGGGG-GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hCCCCCEEeccCCccC--cc----hhHHH-HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7899999988766542 10 11122 3479999999999998765432 246778999999999998644
No 26
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1.6e-09 Score=98.93 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=98.9
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh-cCCCccEEeccCCCC--CCHH---HHHHHH-
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG-RLSAVTFLDLSYCSK--IGAP---ALEAIG- 152 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~-~~~~L~~L~l~~c~~--i~~~---~l~~l~- 152 (322)
.+.|+.|.|+++.... +..+ ..++|++|.|..|.++...+..++. .+|+|++|+|+.+.. .++. .+..+.
T Consensus 171 ~P~L~~L~L~g~~~l~-l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS-IGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTCB-CCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCce-eccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 5689999998763211 1111 3789999999999999999998875 689999999964211 1121 222222
Q ss_pred -hcCCCcceeeccccccCCCCCCCCchHHHHHHh--cCCCCCEEEecCcccCHHHHHHHHh---cCCCCCEEeecCCCCc
Q 020727 153 -KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS--TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDV 226 (322)
Q Consensus 153 -~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~--~~p~L~~L~L~~~~i~~~~l~~i~~---~~~~L~~L~L~~c~~~ 226 (322)
..+|+|+.|.+..+. +.+.++.+++. .+|+|++|+|+.|.+++.++.+++. .+++|++|+|++|. +
T Consensus 248 ~~~~p~Lr~L~L~~~~-------i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i 319 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAE-------EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-L 319 (362)
T ss_dssp TTTCTTCCEEEEESCT-------THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-C
T ss_pred cCCCCCcCEEeCCCCC-------CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-C
Confidence 358999999876443 33445556653 5899999999999999999888875 47999999999985 5
Q ss_pred C
Q 020727 227 K 227 (322)
Q Consensus 227 ~ 227 (322)
+
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 3
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.71 E-value=1.9e-08 Score=90.80 Aligned_cols=142 Identities=19% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
.+.++.|+++++.-..... ...+++|+.|.+.+|.++.... ...+++|++|++++| .++.... ...+++|+
T Consensus 176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~ 246 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLT 246 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCC
T ss_pred CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCC
Confidence 4567888887653211111 3456667777776665443221 345566666666663 3332211 34556666
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
.|.++.+.+.. - .. ...+++|++|++++|.++.. ..+..+++|+.|++++|.... ........+++
T Consensus 247 ~L~l~~n~l~~-------~--~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~ 312 (347)
T 4fmz_A 247 WLEIGTNQISD-------I--NA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTN 312 (347)
T ss_dssp EEECCSSCCCC-------C--GG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCG-GGHHHHHTCTT
T ss_pred EEECCCCccCC-------C--hh-HhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCC-cChhHhhcccc
Confidence 66655443211 0 11 12455555555555554432 123345555555555553221 22222344555
Q ss_pred CeeeC
Q 020727 240 LKVLG 244 (322)
Q Consensus 240 Lk~L~ 244 (322)
|++|.
T Consensus 313 L~~L~ 317 (347)
T 4fmz_A 313 LTTLF 317 (347)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 55553
No 28
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.71 E-value=1.2e-07 Score=78.52 Aligned_cols=122 Identities=8% Similarity=0.128 Sum_probs=77.1
Q ss_pred hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcC---CCccEEeccCCCCCCHHHHHHHHhc---CCCcceeecccc
Q 020727 94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRL---SAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMH 166 (322)
Q Consensus 94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~---~~L~~L~l~~c~~i~~~~l~~l~~~---c~~L~~L~l~~~ 166 (322)
+..+..+..+.+.|++|+|+++ .|.+.+...++..+ ..|+.|+|++ +.+++.+..+|+.. -+.|++|.|..+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4456666666777888888775 77877777666654 5688888887 57777776655543 255666654433
Q ss_pred ccCCCCCCCCchHHHHHHhcC---CCCCEEEecCc---ccCHHHHHHHHh---cCCCCCEEeecCC
Q 020727 167 PLDTADKLSQDDEANAIASTM---PKLKRLEMAYH---VISTEIVLKILS---SCALLEFLDLRGC 223 (322)
Q Consensus 167 ~l~~~~~~~~~~~~~~l~~~~---p~L~~L~L~~~---~i~~~~l~~i~~---~~~~L~~L~L~~c 223 (322)
.+.+.++.+|+..+ +.|++|+|+++ .+.+.+..+|+. .-+.|+.|+++.+
T Consensus 109 -------~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 -------FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp -------BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred -------cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 34456666655443 45777777643 566666554443 3467777777654
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=3.3e-08 Score=88.19 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=36.9
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..+++.|+++++.-..... ...+++|+.|+|++|.++.. . -...+++|++|++++| .++.- .. ...+++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~ 132 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTST-QITDV--TP-LAGLSNLQ 132 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTS-CCCCC--GG-GTTCTTCC
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCC-CCCCc--hh-hcCCCCCC
Confidence 3456666665543111111 23456666666666644432 1 1234566666666653 33321 11 23455666
Q ss_pred eeecccc
Q 020727 160 VLCRNMH 166 (322)
Q Consensus 160 ~L~l~~~ 166 (322)
.|.++.+
T Consensus 133 ~L~l~~n 139 (308)
T 1h6u_A 133 VLYLDLN 139 (308)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6655443
No 30
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.69 E-value=3.6e-09 Score=86.42 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
+++|+.|.+.+|.++. +..+...+++|+.|++++ +.++.- .....+++|+.|.++.+.+. + + ...+
T Consensus 18 ~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~-N~l~~~---~~l~~l~~L~~L~Ls~N~l~--~--~----~~~~ 83 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSD-NEIRKL---DGFPLLRRLKTLLVNNNRIC--R--I----GEGL 83 (176)
T ss_dssp TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCS-SCCCEE---CCCCCCSSCCEEECCSSCCC--E--E----CSCH
T ss_pred cCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCC-CCCCcc---cccccCCCCCEEECCCCccc--c--c----Ccch
Confidence 4455666666654442 122333334666666665 344431 11223455666655444331 0 0 0011
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG 244 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~ 244 (322)
...+|+|++|+|++|.++.-.....+..+++|+.|++++|....... ..+...+|+|++|.
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 12566666666666665432211133456666666666665332211 11345666666663
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.69 E-value=6.7e-09 Score=86.42 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=89.9
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020727 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
.+++|+.|+++++.+++ +. -...+++|++|++++| .++.- . ....+++|++|.++.+.+. ......
T Consensus 42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n~l~-------~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGKDVT-------SDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECTTCB-------GGGSCC
T ss_pred hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECCccC-------cccChh
Confidence 46799999999997763 22 2456899999999996 55432 2 2345899999988766542 111222
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
+ ..+++|++|+|++|.+++.... .+..+++|++|++++|..++.- . ....+++|++|.+
T Consensus 108 l-~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 108 L-SGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNI 166 (197)
T ss_dssp C-TTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEEC
T ss_pred h-cCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEEC
Confidence 3 3789999999999999875544 3457999999999999745422 2 3567889988854
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.68 E-value=2e-08 Score=88.87 Aligned_cols=141 Identities=21% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..+++.|+++++.-..... ...+++|+.|.|++|.++.. .. ...+++|++|++++| .++.- .. ...+++|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n-~i~~~--~~-l~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHN-GISDI--NG-LVHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTS-CCCCC--GG-GGGCTTCC
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCC-cCCCC--hh-hcCCCCCC
Confidence 3557777776543111111 34567777777777765542 22 345677777777773 44432 12 23567777
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
.|.++.+.+. .- .. ...+++|++|+|++|.+++... +..+++|+.|++++|.... -. . ...+++
T Consensus 138 ~L~l~~n~l~-------~~--~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~-l~-~-l~~l~~ 201 (291)
T 1h6t_A 138 SLYLGNNKIT-------DI--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD-LR-A-LAGLKN 201 (291)
T ss_dssp EEECCSSCCC-------CC--GG-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB-CG-G-GTTCTT
T ss_pred EEEccCCcCC-------cc--hh-hccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCC-Ch-h-hccCCC
Confidence 7766555432 11 12 2367888888888887665332 5567888888888874332 11 2 456777
Q ss_pred CeeeCC
Q 020727 240 LKVLGP 245 (322)
Q Consensus 240 Lk~L~~ 245 (322)
|+.|.+
T Consensus 202 L~~L~l 207 (291)
T 1h6t_A 202 LDVLEL 207 (291)
T ss_dssp CSEEEE
T ss_pred CCEEEC
Confidence 777754
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.68 E-value=2.2e-08 Score=90.43 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=90.2
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...++.|+++++.-..... ...+++|+.|++++|.++.... ...+++|+.|+++++ .++.... ...+++|+
T Consensus 154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~ 224 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVN-QITDITP---VANMTRLN 224 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCC
T ss_pred CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc---ccCCCccceeecccC-CCCCCch---hhcCCcCC
Confidence 4568888887754211111 3468888888888886654221 456788888888874 5443222 45678888
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
.|.++.+.+. .... ...+++|++|++++|.++.. ..+..+++|+.|++++|.... - .....+++
T Consensus 225 ~L~l~~n~l~-------~~~~---~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~ 288 (347)
T 4fmz_A 225 SLKIGNNKIT-------DLSP---LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISD-I--SVLNNLSQ 288 (347)
T ss_dssp EEECCSSCCC-------CCGG---GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC-C--GGGGGCTT
T ss_pred EEEccCCccC-------CCcc---hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCC-C--hhhcCCCC
Confidence 8877655432 1111 34788888888888876653 234577888888888885332 1 22467788
Q ss_pred CeeeCC
Q 020727 240 LKVLGP 245 (322)
Q Consensus 240 Lk~L~~ 245 (322)
|++|.+
T Consensus 289 L~~L~L 294 (347)
T 4fmz_A 289 LNSLFL 294 (347)
T ss_dssp CSEEEC
T ss_pred CCEEEC
Confidence 888854
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.65 E-value=1.8e-08 Score=89.20 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=97.5
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020727 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.++.|+++++.-... .. ...+++|+.|+|++|.++... . ...+++|+.|++++ +.++. +.. ...+++|+.|
T Consensus 47 ~L~~L~l~~~~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~-n~l~~--~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-QG-IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDE-NKVKD--LSS-LKDLKKLKSL 117 (291)
T ss_dssp TCCEEECTTSCCCCC-TT-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCS-SCCCC--GGG-GTTCTTCCEE
T ss_pred cccEEEccCCCcccC-hh-HhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCC-CcCCC--Chh-hccCCCCCEE
Confidence 488899877542111 12 356899999999999776532 2 56789999999998 45554 222 4567999999
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020727 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 241 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk 241 (322)
.++.+.+. + +..+ ..+++|++|+|++|.++.- ..+..+++|+.|++++|.... ... ...+++|+
T Consensus 118 ~L~~n~i~--~-------~~~l-~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~ 181 (291)
T 1h6t_A 118 SLEHNGIS--D-------INGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQ 181 (291)
T ss_dssp ECTTSCCC--C-------CGGG-GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred ECCCCcCC--C-------Chhh-cCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCcccc-chh--hcCCCccC
Confidence 88766542 1 1123 3789999999999987754 345678999999999985432 222 67888999
Q ss_pred eeCC
Q 020727 242 VLGP 245 (322)
Q Consensus 242 ~L~~ 245 (322)
+|.+
T Consensus 182 ~L~L 185 (291)
T 1h6t_A 182 NLYL 185 (291)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9865
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.61 E-value=3.1e-08 Score=88.35 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=83.5
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020727 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.+++|+++++.-.. +.. ...+++|+.|+|++|.++.... ...+++|++|+++++ .++.- .. ...+++|+.|
T Consensus 42 ~L~~L~l~~~~i~~-l~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L 112 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN-PLKNV--SA-IAGLQSIKTL 112 (308)
T ss_dssp TCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC-CCSCC--GG-GTTCTTCCEE
T ss_pred CcCEEEeeCCCccC-chh-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCC-cCCCc--hh-hcCCCCCCEE
Confidence 58999998764211 112 3568999999999997765322 567899999999994 55542 22 3467999999
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020727 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 241 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk 241 (322)
.++.+.+.- . .. ...+++|++|+|++|.++.... +..+++|+.|++++|.... -.. ...+++|+
T Consensus 113 ~l~~n~l~~--~-------~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~ 176 (308)
T 1h6u_A 113 DLTSTQITD--V-------TP-LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLT 176 (308)
T ss_dssp ECTTSCCCC--C-------GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred ECCCCCCCC--c-------hh-hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCC-Chh--hcCCCCCC
Confidence 887665421 1 11 2356666666666665543221 3455666666666653221 111 34455555
Q ss_pred eeC
Q 020727 242 VLG 244 (322)
Q Consensus 242 ~L~ 244 (322)
+|.
T Consensus 177 ~L~ 179 (308)
T 1h6u_A 177 TLK 179 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.58 E-value=2.5e-08 Score=97.15 Aligned_cols=141 Identities=22% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
.+.|+.|+|+++.-..... ...+++|+.|.|++|.++.. . ....+++|+.|+|++| .++. +.. ...+++|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~L~ 134 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHN-GISD--ING-LVHLPQLE 134 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTS-CCCC--CGG-GGGCTTCS
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCC-CCCC--Ccc-ccCCCccC
Confidence 5678999998754211111 45788999999999866542 2 2356789999999984 5554 222 34678999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
.|.++.+.+. + - .. ...+++|+.|+|++|.++.... +..+++|+.|+|++|..... .....+++
T Consensus 135 ~L~Ls~N~l~--~-----l--~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~ 198 (605)
T 1m9s_A 135 SLYLGNNKIT--D-----I--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKN 198 (605)
T ss_dssp EEECCSSCCC--C-----C--GG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTT
T ss_pred EEECCCCccC--C-----c--hh-hcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC---hHHccCCC
Confidence 9988766542 1 1 22 3478899999999988765332 56789999999998853321 22467788
Q ss_pred CeeeCC
Q 020727 240 LKVLGP 245 (322)
Q Consensus 240 Lk~L~~ 245 (322)
|+.|.+
T Consensus 199 L~~L~L 204 (605)
T 1m9s_A 199 LDVLEL 204 (605)
T ss_dssp CSEEEC
T ss_pred CCEEEc
Confidence 888865
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.58 E-value=1.2e-08 Score=91.08 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=80.6
Q ss_pred CCCeeEEEecCCCCh-HHHHHH-HHhCCCCCEEecCCCCCCHH--HHHHHHhc-CCCccEEeccCCCCCCHHHHHHHHhc
Q 020727 80 SGSLRKLCVSGLHND-MMFSLI-AENAGSLQTLRLPRSEMSDS--IVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGKH 154 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~-~~l~~l-~~~~~~L~~L~L~~~~i~~~--~l~~l~~~-~~~L~~L~l~~c~~i~~~~l~~l~~~ 154 (322)
..++++|+++++.-. .....+ ...+++|+.|+|++|.++.. .+..+... +++|++|++++ +.++......+ ..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~-~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQV-RV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTC-CC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHh-cc
Confidence 345777777543211 111111 14466777777777754432 22222211 26777777776 34443222222 24
Q ss_pred CCCcceeeccccccCCCCCCCCch-HH-HHH-HhcCCCCCEEEecCcccCH--HHHHHHHhcCCCCCEEeecCCCCcCCC
Q 020727 155 CKLLVVLCRNMHPLDTADKLSQDD-EA-NAI-ASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDVKLD 229 (322)
Q Consensus 155 c~~L~~L~l~~~~l~~~~~~~~~~-~~-~~l-~~~~p~L~~L~L~~~~i~~--~~l~~i~~~~~~L~~L~L~~c~~~~~~ 229 (322)
+++|+.|.++.+.+ ... .. ..+ ...+++|++|+|++|.++. .....++..+++|++|+|++|......
T Consensus 172 l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CSSCCEEECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCCCEEECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 56777776654432 111 11 122 1467888888888887763 333355567788888888887533211
Q ss_pred hHHHHhcCCCCeeeCC
Q 020727 230 DKFMKGNFPNLKVLGP 245 (322)
Q Consensus 230 ~~~l~~~~~~Lk~L~~ 245 (322)
.......+++|++|.+
T Consensus 245 ~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CCSCCCCCTTCCEEEC
T ss_pred chhhhhhcCCCCEEEC
Confidence 1122234567777643
No 38
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.57 E-value=1.2e-08 Score=90.92 Aligned_cols=154 Identities=15% Similarity=0.055 Sum_probs=81.3
Q ss_pred CeeEEEecCCCChHHH-HHHH-HhCCCCCEEecCCCCCCHHH----HHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcC
Q 020727 82 SLRKLCVSGLHNDMMF-SLIA-ENAGSLQTLRLPRSEMSDSI----VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC 155 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l-~~l~-~~~~~L~~L~L~~~~i~~~~----l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c 155 (322)
.+++|+++++.-.... ..++ ..+++|++|+|++|.++... ...+ ..+++|++|++++ +.++..... ....+
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~-n~l~~~~~~-~~~~l 168 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQ-AHSPAFSCE-QVRAF 168 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEEC-CSSCCCCTT-SCCCC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeC-CCcchhhHH-HhccC
Confidence 3777777654311111 1111 45677777777777665311 1122 2567777777777 344322111 12345
Q ss_pred CCcceeeccccccCCCCCCCCchH-HH--HHHhcCCCCCEEEecCcccC--HHHHHHHHhcCCCCCEEeecCCCCcCCCh
Q 020727 156 KLLVVLCRNMHPLDTADKLSQDDE-AN--AIASTMPKLKRLEMAYHVIS--TEIVLKILSSCALLEFLDLRGCWDVKLDD 230 (322)
Q Consensus 156 ~~L~~L~l~~~~l~~~~~~~~~~~-~~--~l~~~~p~L~~L~L~~~~i~--~~~l~~i~~~~~~L~~L~L~~c~~~~~~~ 230 (322)
++|++|.++.+.+ .... .. .....+|+|++|+|++|.++ ......++..+++|++|+|++|.......
T Consensus 169 ~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 169 PALTSLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TTCCEEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred CCCCEEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 7777776654432 1111 11 11136788888888888876 33333455677888888888875433211
Q ss_pred HHHH--hcCCCCeeeCC
Q 020727 231 KFMK--GNFPNLKVLGP 245 (322)
Q Consensus 231 ~~l~--~~~~~Lk~L~~ 245 (322)
..+. ...++|++|.+
T Consensus 242 ~~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNL 258 (310)
T ss_dssp SCCSSCCCCTTCCCEEC
T ss_pred hhHHhccCcCcCCEEEC
Confidence 1121 11257777754
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.56 E-value=6.8e-09 Score=93.55 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=78.7
Q ss_pred cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 020727 79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 158 (322)
Q Consensus 79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L 158 (322)
....++.|++++..-......+ ..+++|+.|+|++|.++ .+......+++|++|+|++ +.++ .+..-...+++|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~-n~l~--~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLAR-NPLR--ALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEES-CCCC--CCCGGGGGCTTC
T ss_pred cccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCC-Cccc--cCcHHHhcCcCC
Confidence 3466888888764322111112 24778888888888666 2333335568888888887 4555 222223456788
Q ss_pred ceeeccccccCCCCCC-CCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcC
Q 020727 159 VVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 237 (322)
Q Consensus 159 ~~L~l~~~~l~~~~~~-~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~ 237 (322)
+.|.++.+.....-.. +...........+++|++|+|++|.++ .+..-+..+++|++|+|++|....... . ...+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~-~-l~~l 228 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP-A-IHHL 228 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG-G-GGGC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch-h-hccC
Confidence 8887765432110000 000000000113566666666666554 222223455666666666654332111 1 3455
Q ss_pred CCCeeeC
Q 020727 238 PNLKVLG 244 (322)
Q Consensus 238 ~~Lk~L~ 244 (322)
++|++|.
T Consensus 229 ~~L~~L~ 235 (328)
T 4fcg_A 229 PKLEELD 235 (328)
T ss_dssp TTCCEEE
T ss_pred CCCCEEE
Confidence 5555554
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.56 E-value=3.7e-09 Score=91.44 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=97.6
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++.-.. .....+++|+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLAN-NQLASLPL-GVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTT-SCCCCCCT-TTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCC-CcccccCh-hHhcccCCCCE
Confidence 468999998754221111123468899999999996664211 2234679999999998 56653221 22346789999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+. +. . ......+++|++|+|++|.++.... ..+..+++|++|+|++|.... -.......+++|
T Consensus 112 L~L~~N~l~--~~--~----~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 181 (251)
T 3m19_A 112 LYLGGNQLK--SL--P----SGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKL 181 (251)
T ss_dssp EECCSSCCC--CC--C----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred EEcCCCcCC--Cc--C----hhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCC
Confidence 988766543 11 0 1112368999999999998763221 234578999999999986443 222334677888
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
++|.+
T Consensus 182 ~~L~l 186 (251)
T 3m19_A 182 QTITL 186 (251)
T ss_dssp CEEEC
T ss_pred CEEEe
Confidence 88854
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.54 E-value=7.6e-09 Score=90.58 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=69.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
+.++.|++++..-.. +. ....+++|+.|.|++|.++... ......+++|++|++++| .++... ......+++|+.
T Consensus 63 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~ 137 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTY 137 (272)
T ss_dssp TTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCC-cCCccC-HHHhccCCCCCE
Confidence 446666665432111 11 1234566666666666444211 111234566666666653 333111 111234566666
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+. +. . ......+++|++|+|++|.++... ...+..+++|++|++++|.... ........+++|
T Consensus 138 L~L~~n~l~--~~-----~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 207 (272)
T 3rfs_A 138 LNLAHNQLQ--SL-----P-KGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSL 207 (272)
T ss_dssp EECCSSCCC--CC-----C-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred EECCCCccC--cc-----C-HHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCC
Confidence 655544332 10 0 011135667777777776655211 1223456677777777664332 222233456666
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
++|.+
T Consensus 208 ~~L~l 212 (272)
T 3rfs_A 208 QYIWL 212 (272)
T ss_dssp CEEEC
T ss_pred CEEEc
Confidence 66643
No 42
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.54 E-value=1.5e-08 Score=88.13 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=44.1
Q ss_pred CcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccc
Q 020727 9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE 57 (322)
Q Consensus 9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~ 57 (322)
.|++||.||+.+||+||+.+|+++ +++|||+|+.++.++.+|+.+-..
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~-l~~vcr~Wr~la~D~~LWr~~l~r 51 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLLR 51 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHH-HHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhccchHHHHHHhc
Confidence 578999999999999999999888 799999999999999999987443
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.54 E-value=2.1e-08 Score=89.53 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=66.6
Q ss_pred CCCeeEEEecCCCC---hHHHHHHHH-hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHH-HH-HHH-H
Q 020727 80 SGSLRKLCVSGLHN---DMMFSLIAE-NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP-AL-EAI-G 152 (322)
Q Consensus 80 ~~~l~~L~l~~~~~---~~~l~~l~~-~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~-~l-~~l-~ 152 (322)
...++.|++++..- ...+..+.. ..++|+.|+|++|.++..... ....+++|++|++++ +.+... .+ ..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSD-NPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCS-CTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCC-CCcCcchHHHHHHHh
Confidence 34577777765321 112222111 126777777777654432111 123456777777776 343332 22 122 1
Q ss_pred hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 153 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 153 ~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
..+++|+.|.++.+.+. + .......+...+++|++|+|++|.++.......+..+++|++|+|++|.
T Consensus 198 ~~l~~L~~L~L~~N~l~--~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGME--T---PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TSCTTCCEEECTTSCCC--C---HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCc--c---hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 45566777765544331 0 0112233444566777777777665543211122345667777777664
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.54 E-value=3.4e-09 Score=88.84 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=85.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|+|++|.++.. .......+++|++|++++ +.++.-. ......+++|+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~-n~l~~~~-~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLST-NQLQSLP-NGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCC-CcCCccC-HhHhcCccCCCE
Confidence 4588888876532222222234578899999988866521 112234578888999887 4554211 122245688888
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+. +. . ......+++|++|+|++|.++... ...+..+++|++|++++|... ..|++|
T Consensus 105 L~L~~N~l~--~~--~----~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~--------~~~~~l 167 (208)
T 2o6s_A 105 LALNTNQLQ--SL--P----DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD--------CTCPGI 167 (208)
T ss_dssp EECCSSCCC--CC--C----TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC--------CCTTTT
T ss_pred EEcCCCcCc--cc--C----HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee--------cCCCCH
Confidence 877665442 11 0 011236788888888888765321 123456788888888887543 245566
Q ss_pred eeeC
Q 020727 241 KVLG 244 (322)
Q Consensus 241 k~L~ 244 (322)
+.|.
T Consensus 168 ~~L~ 171 (208)
T 2o6s_A 168 RYLS 171 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 45
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.53 E-value=1.9e-08 Score=87.71 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=92.9
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|+++++.-.. +.. ...+++|+.|+|++|.++.... ...+++|+.|++++ +.++. +..+.. ++|+.
T Consensus 41 ~~L~~L~l~~n~i~~-l~~-l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~-N~l~~--l~~~~~--~~L~~ 110 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LAG-MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNR-NRLKN--LNGIPS--ACLSR 110 (263)
T ss_dssp TTCSEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCS-SCCSC--CTTCCC--SSCCE
T ss_pred CcCcEEECcCCCccc-chH-HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCC-CccCC--cCcccc--CcccE
Confidence 458888887753211 112 3468899999999987665322 46789999999998 45543 112222 78888
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+. + - .. ...+++|++|+|++|.+++.. .+..+++|+.|++++|..... .....+++|
T Consensus 111 L~L~~N~l~--~-----~--~~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L 174 (263)
T 1xeu_A 111 LFLDNNELR--D-----T--DS-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKV 174 (263)
T ss_dssp EECCSSCCS--B-----S--GG-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCC
T ss_pred EEccCCccC--C-----C--hh-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCC
Confidence 887766442 1 1 12 347899999999999877642 356789999999999864432 334567888
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
+.|.+
T Consensus 175 ~~L~l 179 (263)
T 1xeu_A 175 NWIDL 179 (263)
T ss_dssp CEEEE
T ss_pred CEEeC
Confidence 88754
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.51 E-value=1.4e-08 Score=88.82 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=99.5
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|.++++.-.. +.. ...+++|+.|+|++|.++.. . ....+++|++|++++| .++.-. ......+++|+.
T Consensus 41 ~~L~~L~l~~~~i~~-~~~-l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-VQG-IQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGN-QLQSLP-NGVFDKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTSCCCC-CTT-GGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCE
T ss_pred cceeeeeeCCCCccc-ccc-cccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCC-ccCccC-hhHhcCCcCCCE
Confidence 458899997754211 111 34689999999999977652 2 3356899999999984 555321 122346799999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+.... ......+++|++|+|++|.++... ...+..+++|+.|++++|.... -.......+++|
T Consensus 114 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L 183 (272)
T 3rfs_A 114 LVLVENQLQSLP--------DGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQL 183 (272)
T ss_dssp EECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred EECCCCcCCccC--------HHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCc-cCHHHhcCCccC
Confidence 988766543110 111247899999999999876322 2234578999999999995432 233345678999
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
++|.+
T Consensus 184 ~~L~L 188 (272)
T 3rfs_A 184 KDLRL 188 (272)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99965
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.51 E-value=1.7e-09 Score=97.45 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH--------
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI-------- 151 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l-------- 151 (322)
..+|+.|++++..-.. +......+++|+.|+|++|.++ .+......+++|++|++++|+.++. ....+
T Consensus 103 l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGE 178 (328)
T ss_dssp GTTCSEEEEESSCCCC-CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCC
T ss_pred CCCCCEEECCCCCccc-hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhh
Confidence 3569999998754221 1122356899999999999776 3343456789999999998754432 11111
Q ss_pred HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChH
Q 020727 152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 231 (322)
Q Consensus 152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~ 231 (322)
...+++|+.|.++.+.+. . +. . . ...+++|++|+|++|.++. +..-+..+++|+.|+|++|.......
T Consensus 179 ~~~l~~L~~L~L~~n~l~--~--lp-~---~-l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p- 246 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR--S--LP-A---S-IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYP- 246 (328)
T ss_dssp EEESTTCCEEEEEEECCC--C--CC-G---G-GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCC-
T ss_pred hccCCCCCEEECcCCCcC--c--ch-H---h-hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhH-
Confidence 124789999998877553 1 11 1 1 2478899999999998763 22235678999999999986554222
Q ss_pred HHHhcCCCCeeeCC
Q 020727 232 FMKGNFPNLKVLGP 245 (322)
Q Consensus 232 ~l~~~~~~Lk~L~~ 245 (322)
.....+++|++|.+
T Consensus 247 ~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 247 PIFGGRAPLKRLIL 260 (328)
T ss_dssp CCTTCCCCCCEEEC
T ss_pred HHhcCCCCCCEEEC
Confidence 22356778888754
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=1.1e-07 Score=92.64 Aligned_cols=140 Identities=19% Similarity=0.166 Sum_probs=99.2
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..|+.|.++++.-... .. ...+++|+.|+|++|.++.... ...+++|+.|+|++| .++. +.. ...+++|+.
T Consensus 43 ~~L~~L~l~~n~i~~l-~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~L~~ 113 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-QG-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSS-LKDLKKLKS 113 (605)
T ss_dssp TTCCCCBCTTCCCCCC-TT-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSS-CCCC--CTT-STTCTTCCE
T ss_pred CCCCEEECcCCCCCCC-hH-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCC-CCCC--Chh-hccCCCCCE
Confidence 3477788876532111 12 3569999999999997664322 567899999999995 5544 222 346799999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+. + +..+ ..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.... ... ...+++|
T Consensus 114 L~Ls~N~l~--~-------l~~l-~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L 177 (605)
T 1m9s_A 114 LSLEHNGIS--D-------INGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKL 177 (605)
T ss_dssp EECTTSCCC--C-------CGGG-GGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTC
T ss_pred EEecCCCCC--C-------Cccc-cCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCC-chh--hccCCCC
Confidence 988766542 1 1123 4799999999999988764 345689999999999996443 222 6788999
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
+.|.+
T Consensus 178 ~~L~L 182 (605)
T 1m9s_A 178 QNLYL 182 (605)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99975
No 49
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=4.1e-09 Score=87.77 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=94.4
Q ss_pred eeEEEecCCCC-hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020727 83 LRKLCVSGLHN-DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 83 l~~L~l~~~~~-~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
++...+.+... -..+......+++|+.|+|++|.++. +. ....+++|+.|++++| .++. +......+++|+.|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEEL 98 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEE
Confidence 55566654321 11111133568899999999985544 22 2345699999999984 5552 23334456889999
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCC------h---HH
Q 020727 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---KF 232 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~------~---~~ 232 (322)
.++.+.+. + +..+. .+++|++|+|++|.++.-.....+..+++|++|++++|...... . ..
T Consensus 99 ~L~~N~l~--~-------l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 99 WISYNQIA--S-------LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp EEEEEECC--C-------HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred ECcCCcCC--c-------CCccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 88776542 1 22343 67899999999999886544455668999999999998543210 1 12
Q ss_pred HHhcCCCCeeeC
Q 020727 233 MKGNFPNLKVLG 244 (322)
Q Consensus 233 l~~~~~~Lk~L~ 244 (322)
+...+++|++|.
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 367889999883
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.48 E-value=9.5e-09 Score=90.41 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=29.0
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+++|++|+|++|.++.... ..+..+++|+.|++++|.... ........+++|++|.+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRL 232 (285)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEEC
T ss_pred CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEec
Confidence 45666666666665443211 122345666666666664322 22233345666666643
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.48 E-value=9.9e-08 Score=84.99 Aligned_cols=115 Identities=16% Similarity=0.076 Sum_probs=53.6
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHH--HhcCCCcceeeccccccCCCCCCCCchH
Q 020727 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAI--GKHCKLLVVLCRNMHPLDTADKLSQDDE 179 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l--~~~c~~L~~L~l~~~~l~~~~~~~~~~~ 179 (322)
.+++|+.|+|++|.++.... .....+++|++|+++++ .+.. .++... ...+++|++|.++.+.+.. ....
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~ 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMET-----PTGV 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----HHHH
T ss_pred hccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----hHHH
Confidence 46667777776665432111 11234566667777663 3332 222211 1345666666554433210 0111
Q ss_pred HHHHHhcCCCCCEEEecCcccCHHHHHHHHh--cCCCCCEEeecCCC
Q 020727 180 ANAIASTMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGCW 224 (322)
Q Consensus 180 ~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~--~~~~L~~L~L~~c~ 224 (322)
...+...+++|++|+|++|.++......+.. .+++|++|+|++|.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence 2233345666666666666654421111111 12566666666664
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.47 E-value=4.3e-08 Score=93.56 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=70.6
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcce
Q 020727 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVV 160 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l~~~c~~L~~ 160 (322)
.++.|+++++.-.... +...+++|+.|++++|.++......+ ..+++|+.|++++ +.++. ..+......+++|+.
T Consensus 303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~-N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCS-SCCCBHHHHHHHHTTCTTCCE
T ss_pred ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccC-CccCccccchHHHhhCCCCCE
Confidence 4777777654311100 00356677777777776654322222 4567777777776 35543 223333445677777
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcC-CCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~-~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
|.++.+.+.. .........+++|++|+|++|.++... .... ++|+.|++++|.... -...+. .+++
T Consensus 379 L~Ls~N~l~~-------~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~~-ip~~~~-~l~~ 445 (520)
T 2z7x_B 379 LDISQNSVSY-------DEKKGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIKS-IPKQVV-KLEA 445 (520)
T ss_dssp EECCSSCCBC-------CGGGCSCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCCC-CCGGGG-GCTT
T ss_pred EECCCCcCCc-------ccccchhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCcccc-cchhhh-cCCC
Confidence 7665554321 000001123556666666666554321 1122 456666666553221 111222 5555
Q ss_pred CeeeC
Q 020727 240 LKVLG 244 (322)
Q Consensus 240 Lk~L~ 244 (322)
|++|.
T Consensus 446 L~~L~ 450 (520)
T 2z7x_B 446 LQELN 450 (520)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 55554
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.47 E-value=7.2e-09 Score=90.57 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=38.6
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..+++|++++..-..........+++|+.|+|++|.++.. ...+...+++|++|++++ +.++.-.. .....+++|+.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTD-NKLQALPI-GVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCS-SCCCCCCT-TTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCC-CcCCcCCH-hHcccccCCCE
Confidence 3466777665431111111123456677777766644421 111223456666776666 34432111 11234566666
Q ss_pred eecccc
Q 020727 161 LCRNMH 166 (322)
Q Consensus 161 L~l~~~ 166 (322)
|.++.+
T Consensus 114 L~l~~n 119 (270)
T 2o6q_A 114 LRLDRN 119 (270)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 665544
No 54
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.47 E-value=3.1e-08 Score=80.82 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=90.7
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
+..++.|+++++.-.. +..+....++|+.|+|++|.++.. .....+++|++|++++ +.++.-. ..+...+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~-N~l~~~~-~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNN-NRICRIG-EGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCS-SCCCEEC-SCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCC-CcccccC-cchhhcCCCCC
Confidence 4568999998764221 233445566999999999987753 2335679999999998 5676421 22335689999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHHhcCCCCCEEeecCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~~~~~~L~~L~L~~c~ 224 (322)
.|.++.+.+. .. ..+..+ ..+|+|++|++++|.++... -..++..+|+|+.|+++++.
T Consensus 92 ~L~L~~N~i~--~~----~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV--EL----GDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC--CG----GGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC--cc----hhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9988766542 10 111233 37999999999999875421 12356789999999999875
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.45 E-value=1.2e-09 Score=97.84 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=67.4
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
+++|+.|.+++|.++...-. ....+++|++|++++ +.++......+...+++|+.|.++.+.+... ...
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~ 187 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDV---------KGQ 187 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------ECC
T ss_pred cCCCCEEECCCCCCCCccch-hhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCccc---------ccc
Confidence 56788888888766542111 123457888888887 5666555555555677788887765543210 000
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
..+++|++|+|++|.++.-.. -+..+++|+.|+|++|....... ....+++|+.|.
T Consensus 188 -~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~ 243 (317)
T 3o53_A 188 -VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFD 243 (317)
T ss_dssp -CCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEE
T ss_pred -cccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchhh--HhhcCCCCCEEE
Confidence 135666666666665542111 13355666666666664322111 123445555554
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.45 E-value=8.8e-09 Score=90.03 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=99.6
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..+|+.|++++..-......+...+++|+.|.|++|.++.... .....+++|++|++++ +.++...... ...+++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDR-NQLKSLPPRV-FDSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCS-SCCCCCCTTT-TTTCTTCC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCC-CccCeeCHHH-hCcCcCCC
Confidence 4579999997754222222223568899999999996653211 2335679999999998 4554322222 24679999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
.|.++.+.+.... . .....+++|++|+|++|.++.... ..+..+++|++|+|++|.... -.......+++
T Consensus 137 ~L~Ls~n~l~~~~-------~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 206 (270)
T 2o6q_A 137 YLSLGYNELQSLP-------K-GVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEK 206 (270)
T ss_dssp EEECCSSCCCCCC-------T-TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTT
T ss_pred EEECCCCcCCccC-------H-hHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCc-CCHHHhccccC
Confidence 9988766543111 1 112468999999999998654321 224578999999999985443 23334467888
Q ss_pred CeeeCC
Q 020727 240 LKVLGP 245 (322)
Q Consensus 240 Lk~L~~ 245 (322)
|+.|.+
T Consensus 207 L~~L~l 212 (270)
T 2o6q_A 207 LKMLQL 212 (270)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 988865
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.44 E-value=8.6e-09 Score=96.62 Aligned_cols=135 Identities=16% Similarity=0.049 Sum_probs=67.8
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
+++++|++++..-..........+++|+.|+|++|.++..........+++|++|+|++ +.++......+ ..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAF-NGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECTTTT-TTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccChhhc-cCcccCCE
Confidence 44677777654321111111234667777777776443111111223457777777776 34443222222 34566777
Q ss_pred eeccccccCCCCCCCCchHHHH-HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~-l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
|.+..+.+ ....... ....+++|++|+|++|.++......++.++++|++|++++|.
T Consensus 108 L~L~~n~l-------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 108 LTLTQCNL-------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp EECTTSCC-------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred EeCCCCCC-------CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 76554433 1111111 123566777777777765543322334566777777777664
No 58
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.44 E-value=1.7e-06 Score=71.67 Aligned_cols=120 Identities=12% Similarity=0.177 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcC---CCcceeeccccccCCCCCCCCchHHHHHHh---cCCCCCE
Q 020727 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKR 192 (322)
Q Consensus 119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c---~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~---~~p~L~~ 192 (322)
+..+..+...-+.|++|+|++++.+++.++.++++.+ ..|+.|.|. ++.+.+.++.+|+. .-+.|++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~ 102 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRV 102 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCe
Confidence 4567777777799999999985599999988887754 568888654 44556677766653 4578999
Q ss_pred EEecCcccCHHHHHHHHhcC---CCCCEEeecCCCC--cCCCh----HHHHhcCCCCeeeCC
Q 020727 193 LEMAYHVISTEIVLKILSSC---ALLEFLDLRGCWD--VKLDD----KFMKGNFPNLKVLGP 245 (322)
Q Consensus 193 L~L~~~~i~~~~l~~i~~~~---~~L~~L~L~~c~~--~~~~~----~~l~~~~~~Lk~L~~ 245 (322)
|+|+.|.|++.++.+|+..+ +.|++|+|+++.+ ++..+ ...++..+.|+.|..
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 99999999999999999866 5799999987643 32122 123567788888854
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.43 E-value=4.3e-08 Score=88.95 Aligned_cols=58 Identities=24% Similarity=0.205 Sum_probs=26.4
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccC
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY 139 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 139 (322)
.+++.|++++..-..........+++|+.|+|++|.++... ......+++|++|++++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTT
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCC
Confidence 45666666553211111111233556666666666444211 11223456666666665
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.41 E-value=2.4e-07 Score=87.34 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=37.6
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...++.|+++++.-.. +.. ...+++|+.|++.+|.++.... ...+++|+.|++++| .++.... ...+++|+
T Consensus 220 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~ 290 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKD-IGT-LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALT 290 (466)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCS
T ss_pred cCCCCEEECCCCCccc-chh-hhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccC
Confidence 3457777776543111 011 2346666666666664443211 344566666666653 3332111 23455566
Q ss_pred eeecccc
Q 020727 160 VLCRNMH 166 (322)
Q Consensus 160 ~L~l~~~ 166 (322)
.|.++.+
T Consensus 291 ~L~L~~n 297 (466)
T 1o6v_A 291 NLELNEN 297 (466)
T ss_dssp EEECCSS
T ss_pred eEEcCCC
Confidence 6655433
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.41 E-value=1.5e-06 Score=83.32 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=48.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHH--HhcCCCccEEeccCCCCCCHHH-HHHHHhcCCC
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQI--AGRLSAVTFLDLSYCSKIGAPA-LEAIGKHCKL 157 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l--~~~~~~L~~L~l~~c~~i~~~~-l~~l~~~c~~ 157 (322)
+.++.|++++..-...-..+...+++|+.|+|++|.++....... ...+++|+.|++++| .++.-. .......+++
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCC
Confidence 456677776543222222333457777777777777776543321 245677777777773 454322 1233455677
Q ss_pred cceeeccccc
Q 020727 158 LVVLCRNMHP 167 (322)
Q Consensus 158 L~~L~l~~~~ 167 (322)
|+.|+++.+.
T Consensus 389 L~~L~Ls~N~ 398 (549)
T 2z81_A 389 LTSLDISRNT 398 (549)
T ss_dssp CCEEECTTCC
T ss_pred CCEEECCCCC
Confidence 7777765553
No 62
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.41 E-value=9.9e-08 Score=83.82 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=43.7
Q ss_pred CCCcccCCHHHHHHHHccCChHHHh-hhhhhhhHHHHHHhcCCCceeeec
Q 020727 7 FRHWDELIPDALGLIFRNLSLQEVL-TVIPGVCKSWRRAVIGPYCWQEID 55 (322)
Q Consensus 7 ~~~w~~LP~eiL~~IF~~L~~~~~l-~~~~~VCk~W~~~~~~~~lw~~i~ 55 (322)
......||+|+|..||.+|+.++++ + |++|||+|+.++.++.+|++.-
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r-~~~VCk~Wr~l~~~~~~w~~~~ 96 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQA-CRLVCLRWKELVDGAPLWLLKC 96 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHT-GGGTCHHHHHHHTSHHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHH-HHHHhHHHHHHhcChHHHHHHh
Confidence 4577899999999999999999999 7 8999999999999999998653
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.40 E-value=2.7e-08 Score=99.76 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCeeEEEecCCCChHHHHH--HHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH--HHhcCC
Q 020727 81 GSLRKLCVSGLHNDMMFSL--IAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA--IGKHCK 156 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~--l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~--l~~~c~ 156 (322)
.+|++|+++++.-...+.. ...++++|++|+|++|.++......+..++++|++|++++ +.++...... ....++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA-NSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS-SCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC-CccCCcCChhhhhhccCC
Confidence 4577778776531111111 2345788888888887443221112224567888888887 4555433322 245677
Q ss_pred CcceeeccccccC---------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeec
Q 020727 157 LLVVLCRNMHPLD---------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLR 221 (322)
Q Consensus 157 ~L~~L~l~~~~l~---------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~ 221 (322)
+|++|.+..+.+. +.++.+... ... ...+++|++|+|++|.++.... ..+..+++|++|+++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNIS 255 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECC
Confidence 7777776544331 111111110 001 2245666666666665543222 223456666666666
Q ss_pred CCCCcCCChHHHHhcCCCCeeeC
Q 020727 222 GCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 222 ~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
+|........ ..+++|++|.
T Consensus 256 ~n~l~~~~~~---~~l~~L~~L~ 275 (768)
T 3rgz_A 256 SNQFVGPIPP---LPLKSLQYLS 275 (768)
T ss_dssp SSCCEESCCC---CCCTTCCEEE
T ss_pred CCcccCccCc---cccCCCCEEE
Confidence 6643211111 1455666654
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.40 E-value=1.2e-08 Score=90.29 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=18.2
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+++|+.|+|++|.++.- ...++..+++|+.|+|++|.
T Consensus 146 ~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCc
Confidence 455555555555554321 11122345556666665554
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.39 E-value=5.8e-07 Score=84.63 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=16.2
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c 223 (322)
.+++|+.|+|++|.++.... +..+++|+.|++++|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSS
T ss_pred CCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCC
Confidence 44555555555554432111 234455555555554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.39 E-value=1e-08 Score=90.13 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=17.7
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+++|++|+|++|.++.... ..+..+++|+.|++++|.
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred cCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCc
Confidence 45555555555554432110 112345555555555553
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.37 E-value=4.7e-09 Score=93.28 Aligned_cols=154 Identities=19% Similarity=0.098 Sum_probs=84.3
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...|+.|++++..-..... ....+++|+.|++++|.++..........+++|++|+++++ .++.... .....+++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~ 153 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLE 153 (306)
T ss_dssp CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECST-TTTTTCTTCC
T ss_pred ccccCEEECCCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccch-hhcccCcCCC
Confidence 4668888887753111000 12347888888888875443221123345688888888874 4432211 1223567888
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~ 239 (322)
.|.+..+.+.- .........+++|++|+|++|.++.... ..+..+++|++|+|++|..... .......+++
T Consensus 154 ~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~ 224 (306)
T 2z66_A 154 VLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNS 224 (306)
T ss_dssp EEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTT
T ss_pred EEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCcc-ChhhccCccc
Confidence 88776554321 0011112356777777777776554211 2234567777777777753332 2222356677
Q ss_pred CeeeCC
Q 020727 240 LKVLGP 245 (322)
Q Consensus 240 Lk~L~~ 245 (322)
|++|.+
T Consensus 225 L~~L~L 230 (306)
T 2z66_A 225 LQVLDY 230 (306)
T ss_dssp CCEEEC
T ss_pred CCEeEC
Confidence 777754
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.35 E-value=6.9e-08 Score=90.41 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=90.5
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|+|++|.++.... .....+++|++|+++++ .++..........+++|++|.++.+.+. ......+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~- 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFL-------QLETGAF- 99 (455)
T ss_dssp TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTC-------EECTTTT-
T ss_pred CccCEEEecCCccCcCCh-hHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccC-------ccChhhc-
Confidence 689999999997764322 22356899999999995 4432211222346799999988766542 1111223
Q ss_pred hcCCCCCEEEecCcccCHHHHHH-HHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 185 STMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~-i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
..+++|++|+|++|.++...+.. .+..+++|++|+|++|.........+...+++|++|.+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 37899999999999987644332 25578999999999997554333444678899999975
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.34 E-value=1.6e-08 Score=94.70 Aligned_cols=58 Identities=12% Similarity=-0.047 Sum_probs=26.6
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+++|++|+|++|.++.... ..+..+++|+.|+|++|.... ........+++|+.|.+
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHL 286 (440)
T ss_dssp TCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEEC
T ss_pred cCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEc
Confidence 34455555555544332211 112345666666666664322 22223345566666653
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.34 E-value=1.7e-08 Score=90.32 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccC
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY 139 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~ 139 (322)
.+.++.|++++..-..........+++|+.|+|++|.++... . ...+++|++|++++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNN 89 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcC
Confidence 445777877765422222222345777777777777554211 1 34557777777776
No 71
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.34 E-value=4.9e-08 Score=81.69 Aligned_cols=129 Identities=14% Similarity=0.083 Sum_probs=87.0
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.++|+.|+|+++.++.. .......+++|++|++++ +.++.- .......+++|++|.++.+.+. +. . ...
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~--~~--~----~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGG-NKLQSL-PNGVFNKLTSLTYLNLSTNQLQ--SL--P----NGV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSCCC--CC--C----TTT
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCC-CccCcc-ChhhcCCCCCcCEEECCCCcCC--cc--C----HhH
Confidence 46899999999976632 122335679999999998 566532 1222356799999988766543 11 0 111
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
...+++|++|+|++|.++... ...+..+++|++|+|++|.... ........+++|++|.+
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred hcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEe
Confidence 247899999999999876321 1234578999999999985443 22334567888988865
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.33 E-value=2e-08 Score=94.42 Aligned_cols=58 Identities=17% Similarity=-0.036 Sum_probs=26.1
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+++|+.|+|++|.++.... ..+.++++|+.|+|++|...+ -.......+++|+.|.+
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEEC
T ss_pred CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEc
Confidence 34555555555554332111 112345666666666653222 12222345566666643
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.33 E-value=1.3e-08 Score=99.08 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=7.8
Q ss_pred CCCCCEEecCCCCCC
Q 020727 104 AGSLQTLRLPRSEMS 118 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~ 118 (322)
+++|+.|++.+|.++
T Consensus 300 l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 300 LSTLKKLVLSANKFE 314 (606)
T ss_dssp CTTCCEEECTTCCCS
T ss_pred cccCCEEECccCCcC
Confidence 455555555555443
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.30 E-value=6.8e-08 Score=82.31 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|.|++|.++... ......+++|+.|+|++ +.++.-. ......+++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~-N~l~~l~-~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGT-NQLTVLP-SAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCC-CcCCccC-hhHhCcchhhCe
Confidence 45777877664322111122245677888888877553211 11224567788888877 4554211 112235677777
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
|.++.+.+. . +. . .+ ..+++|++|+|++|.++.-.. ..+..+++|+.|+|+++.
T Consensus 117 L~Ls~N~l~--~--lp-~---~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNKLT--E--LP-R---GI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCC--S--CC-T---TG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred EeccCCccc--c--cC-c---cc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 776655442 1 10 1 11 367777777777776553211 234466777777777765
No 75
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.30 E-value=9.8e-09 Score=91.82 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=24.7
Q ss_pred CCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 190 LKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 190 L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
|+.|+|++|.++.. ....+..+++|+.|+|++|.... .... ...+++|++|.+
T Consensus 199 L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~~l~~L~~L~L 251 (313)
T 1ogq_A 199 LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDL 251 (313)
T ss_dssp CSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECC-BGGG-CCCCTTCCEEEC
T ss_pred ccEEECcCCcccCc-CCHHHhcCCCCCEEECCCCceee-ecCc-ccccCCCCEEEC
Confidence 55555555543321 11223355666666666664321 1111 334556666543
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.30 E-value=3.4e-08 Score=85.27 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=90.1
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...|+.|++++..-..........+++|+.|+|++|.++... ......+++|++|+|++ +.++.-. ......+++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-N~l~~~~-~~~~~~l~~L~ 134 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGG-NQLKSLP-SGVFDRLTKLK 134 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCC-CcCCCcC-hhHhccCCccc
Confidence 467999999875422222222346889999999999776321 12335679999999998 5665321 12234679999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
.|.++.+.+. +. . ...+ ..+++|++|+|++|.++.... ..+..+++|+.|+|++|...
T Consensus 135 ~L~Ls~N~l~--~~--~---~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 135 ELRLNTNQLQ--SI--P---AGAF-DKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp EEECCSSCCC--CC--C---TTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBC
T ss_pred EEECcCCcCC--cc--C---HHHc-CcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCcee
Confidence 9998766543 11 0 1112 368999999999998763221 23457899999999998643
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.29 E-value=4e-08 Score=92.78 Aligned_cols=130 Identities=23% Similarity=0.077 Sum_probs=61.3
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020727 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
.+++|+.|+|++|.++.... .....+++|++|+|++ +.++...... ...+++|+.|.+..+.+.. ....+
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~~~ 147 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISE-NKIVILLDYM-FQDLYNLKSLEVGDNDLVY-------ISHRA 147 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCT-TSSTTCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEEECCTTCCE-------ECTTS
T ss_pred CCccCCEEECCCCcCCccCc-ccccCCCCCCEEECCC-CccccCChhH-ccccccCCEEECCCCccce-------eChhh
Confidence 35555555555554332110 1112345555555555 3333211111 1344556666554333211 11111
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
+ ..+++|++|+|++|.++... ...+..+++|+.|+|++|..... .......+++|++|.+
T Consensus 148 ~-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 148 F-SGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEI 207 (477)
T ss_dssp S-TTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEE
T ss_pred c-cCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeC
Confidence 2 25677777777777654322 12345677777777777643321 1222346667777653
No 78
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.28 E-value=2.6e-08 Score=84.90 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=87.1
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|.|++|.++... ......+++|++|+|++ +.++.-. ......+++|+.|.++.+.+..-. ....
T Consensus 40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~-N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGS-NQLGALP-VGVFDSLTQLTVLDLGTNQLTVLP--------SAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC--------TTTT
T ss_pred CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCC-CCCCCcC-hhhcccCCCcCEEECCCCcCCccC--------hhHh
Confidence 79999999999766421 12235679999999998 5664321 122356799999998776553111 1122
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
..+++|++|+|++|.++. +..-+..+++|++|+|++|...... ......+++|++|.+
T Consensus 109 ~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEe
Confidence 378999999999998772 2233468899999999998644322 234567888988855
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.27 E-value=7.7e-09 Score=99.63 Aligned_cols=58 Identities=24% Similarity=0.309 Sum_probs=27.2
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
.+++|++|+|++|.+++..+...+..+++|+.|+|++|.... ........+++|++|.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEe
Confidence 455666666666554432222233455666666666653221 1111223455555554
No 80
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=5.7e-07 Score=78.28 Aligned_cols=120 Identities=23% Similarity=0.143 Sum_probs=87.3
Q ss_pred HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020727 102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 181 (322)
Q Consensus 102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~ 181 (322)
..+++|+.|++.+|.++.. . -...+++|+.|++++ +.++.-.. ...+++|+.|.++.+.+.- . .
T Consensus 38 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~-N~i~~~~~---l~~l~~L~~L~L~~N~l~~--l-------~ 101 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSH-NQISDLSP---LKDLTKLEELSVNRNRLKN--L-------N 101 (263)
T ss_dssp HHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCS-SCCCCCGG---GTTCSSCCEEECCSSCCSC--C-------T
T ss_pred hhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCC-CccCCChh---hccCCCCCEEECCCCccCC--c-------C
Confidence 3578999999999977642 2 235689999999998 46654332 5678999999988775531 1 1
Q ss_pred HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+. . ++|++|+|++|.++.-. -+..+++|+.|++++|.... -. ....+++|++|.+
T Consensus 102 ~~~-~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L 157 (263)
T 1xeu_A 102 GIP-S-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDL 157 (263)
T ss_dssp TCC-C-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEEC
T ss_pred ccc-c-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEEC
Confidence 112 2 89999999999887632 25689999999999996443 22 3567899999965
No 81
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.26 E-value=2.9e-08 Score=90.05 Aligned_cols=85 Identities=19% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
+.+++|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++.-.. .....+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSY-NYLSNLSS-SWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCS-SCCSSCCH-HHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCCCCEEECCC-CcCCcCCH-hHhCCCccCCE
Confidence 468899987754221111123468899999999887664211 1234578999999998 46654222 22356788999
Q ss_pred eecccccc
Q 020727 161 LCRNMHPL 168 (322)
Q Consensus 161 L~l~~~~l 168 (322)
|.++.+.+
T Consensus 129 L~L~~n~l 136 (353)
T 2z80_A 129 LNLLGNPY 136 (353)
T ss_dssp EECTTCCC
T ss_pred EECCCCCC
Confidence 98876544
No 82
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=1.8e-07 Score=90.54 Aligned_cols=123 Identities=21% Similarity=0.360 Sum_probs=83.1
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
.+|+.|+|++|.++. +.. ...+++|+.|+|++ +.++ .+..-...+++|+.|.++.+.+. +. ..+
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~-N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~l-------p~l- 504 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSH-NRLR--ALPPALAALRCLEVLQASDNALE--NV-------DGV- 504 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCS-SCCC--CCCGGGGGCTTCCEEECCSSCCC--CC-------GGG-
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCc-cccc--ccchhhhcCCCCCEEECCCCCCC--CC-------ccc-
Confidence 368899999886654 233 45678999999998 5666 22223346788999988766542 21 123
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeee
Q 020727 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVL 243 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L 243 (322)
..+++|+.|+|++|.++.......+..+++|+.|+|++|....... ..+...+|+|++|
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 3789999999999987654212334578999999999986443222 3456678888887
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.24 E-value=5.3e-08 Score=91.94 Aligned_cols=129 Identities=18% Similarity=0.057 Sum_probs=56.9
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020727 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
.+++|+.|+|++|.++..... ....+++|++|+|++ +.++.-.. .....+++|+.|.++.+.+.. .....
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-------~~~~~ 123 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRS-NRLKLIPL-GVFTGLSNLTKLDISENKIVI-------LLDYM 123 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS-SCCCSCCT-TSSTTCTTCCEEECTTSCCCE-------ECTTT
T ss_pred CCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCC-CcCCccCc-ccccCCCCCCEEECCCCcccc-------CChhH
Confidence 455666666666544432111 123446666666665 33332111 111235566666554433211 00011
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
+ ..+++|++|+|++|.++..... .+.++++|+.|+|++|.... ........+++|+.|.
T Consensus 124 ~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 124 F-QDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLR 182 (477)
T ss_dssp T-TTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEE
T ss_pred c-cccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEe
Confidence 1 2456666666666554322111 12345666666666653222 2223334555666554
No 84
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.24 E-value=4.8e-08 Score=91.72 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=25.4
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+++|++|+|++|.++.... ..+.++++|+.|+|++|..... .......+++|+.|.+
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNL 273 (452)
T ss_dssp TCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred ccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEEC
Confidence 34455555555554332111 1223455555555555532211 1122345566666643
No 85
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.22 E-value=5.1e-08 Score=91.27 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=25.4
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+++|++|+|++|.++.... ..+.++++|+.|+|++|.... ........+++|++|.+
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINL 262 (440)
T ss_dssp TCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEEC
T ss_pred CCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEEC
Confidence 34455555555554432111 122345555555555553221 11122345566666643
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.22 E-value=3.8e-08 Score=86.07 Aligned_cols=134 Identities=24% Similarity=0.103 Sum_probs=75.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++......+ ..+++|+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTG-NPIQSLALGAF-SGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTT-CCCCEECTTTT-TTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCC-CccCccChhhh-cCCccccE
Confidence 357788886643211111112357788888888876553211 1224567888888887 45543322222 34677888
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 225 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~ 225 (322)
|.+..+.+.... ... ...+++|++|+|++|.++...+...+..+++|++|++++|..
T Consensus 105 L~l~~n~l~~~~-------~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 105 LVAVETNLASLE-------NFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EECTTSCCCCST-------TCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCCccccC-------chh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 877655432111 001 235777888888877765433333445677888888877753
No 87
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.22 E-value=1.5e-08 Score=90.10 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=96.9
Q ss_pred CCCeeEEEecCCCChHHHH-HHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 020727 80 SGSLRKLCVSGLHNDMMFS-LIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 158 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~-~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L 158 (322)
...|++|++++..-..... .....+++|+.|++++|.++... ......+++|++|++++ +.++...+......+++|
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCC-CccccccchhHHhhCcCC
Confidence 4568999997643111110 12346889999999998654321 12234579999999998 455543333334567899
Q ss_pred ceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcC-
Q 020727 159 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF- 237 (322)
Q Consensus 159 ~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~- 237 (322)
+.|.++.+.+. ......+ ..+++|++|+|++|.++..... .+..+++|+.|+|++|.... ........+
T Consensus 178 ~~L~Ls~n~l~-------~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~ 247 (306)
T 2z66_A 178 TFLDLSQCQLE-------QLSPTAF-NSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMT-SKKQELQHFP 247 (306)
T ss_dssp CEEECTTSCCC-------EECTTTT-TTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCB-CSSSSCCCCC
T ss_pred CEEECCCCCcC-------CcCHHHh-cCCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCcc-cCHHHHHhhh
Confidence 99988766442 1111222 3689999999999987653221 24578999999999996443 222223344
Q ss_pred CCCeeeCC
Q 020727 238 PNLKVLGP 245 (322)
Q Consensus 238 ~~Lk~L~~ 245 (322)
++|++|.+
T Consensus 248 ~~L~~L~L 255 (306)
T 2z66_A 248 SSLAFLNL 255 (306)
T ss_dssp TTCCEEEC
T ss_pred ccCCEEEc
Confidence 47888854
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.21 E-value=2.5e-08 Score=96.91 Aligned_cols=162 Identities=21% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCCeeEEEecCCCCh-HHHHHHHHhCCCCCEEecCCCCCCHHHH-HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020727 80 SGSLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIV-AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 157 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~-~~l~~l~~~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~ 157 (322)
.+.++.|+++++... .........+++|+.|++++|.++.... ......+++|++|++++| .++...... ...+++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~ 401 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQ 401 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHH-hcCCcc
Confidence 356777777664311 1111112346677777777765543210 111234566666666663 332211111 123455
Q ss_pred cceeeccccccC------------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHH--HHHhcCCCCCE
Q 020727 158 LVVLCRNMHPLD------------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL--KILSSCALLEF 217 (322)
Q Consensus 158 L~~L~l~~~~l~------------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~--~i~~~~~~L~~ 217 (322)
|+.|.++.+.+. +.++.+.......+ ..+|+|++|+|++|.++...+. ..+..+++|+.
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-hCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 666655433221 11111111111111 2466666666666665432111 12345666666
Q ss_pred EeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 218 LDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 218 L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
|++++|...... ......+++|++|.+
T Consensus 481 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 481 LVLSFCDLSSID-QHAFTSLKMMNHVDL 507 (606)
T ss_dssp EECTTSCCCEEC-TTTTTTCTTCCEEEC
T ss_pred EECCCCccCccC-hhhhccccCCCEEEC
Confidence 666666433211 122345566666643
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.21 E-value=1.7e-08 Score=95.90 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
+++|+.|.|++|.++...-.. ...+++|+.|+|++ +.++......+...+++|+.|.++.+.+.-. ...
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------~~~ 187 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDV---------KGQ 187 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------ECC
T ss_pred cCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccccc---------ccc
Confidence 577888888887665432111 23467888888887 5666655555555677888887765543210 001
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
..+++|+.|+|++|.++.... -+..+++|+.|+|++|...+... ....+++|+.|.
T Consensus 188 -~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~ 243 (487)
T 3oja_A 188 -VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFD 243 (487)
T ss_dssp -CCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEE
T ss_pred -ccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccch--hhccCCCCCEEE
Confidence 135666666666665543111 13355666666666654332111 123445555554
No 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.20 E-value=4.9e-08 Score=97.88 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...|+.|+++++.-...+.. ...+++|+.|+|.+|.++..... ....+++|++|++++| .++..... ..+++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n-~l~~~~~~---~~l~~L~ 272 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSN-QFVGPIPP---LPLKSLQ 272 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSS-CCEESCCC---CCCTTCC
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCC-cccCccCc---cccCCCC
Confidence 56788888876542211112 34678888888888877644333 3356788888888875 33211100 0455666
Q ss_pred eeeccccccC------------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeec
Q 020727 160 VLCRNMHPLD------------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLR 221 (322)
Q Consensus 160 ~L~l~~~~l~------------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~ 221 (322)
+|.+..+.+. +.++.+.......+ ..+++|++|+|++|.++.......+..+++|++|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 6655443321 11111100001112 3567777777777755422222234466777777777
Q ss_pred CCC
Q 020727 222 GCW 224 (322)
Q Consensus 222 ~c~ 224 (322)
+|.
T Consensus 352 ~n~ 354 (768)
T 3rgz_A 352 FNE 354 (768)
T ss_dssp SSE
T ss_pred CCc
Confidence 764
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.20 E-value=4.6e-08 Score=82.91 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=72.6
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|+|++ +.++.- ...+...+++|+.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCE
Confidence 357777776543111111112346778888888876653211 1224567888888887 455421 1122245677777
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 225 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~ 225 (322)
|.++.+.+.... ...+ ..+++|++|+|++|.++.... ..+..+++|+.|+|+++..
T Consensus 109 L~L~~N~l~~~~-------~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLR-------VDAF-QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCC-------TTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeC-------HHHc-CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCc
Confidence 777655442111 1112 256778888888776543221 1234567778888877753
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.19 E-value=1.4e-07 Score=91.09 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcc
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLV 159 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l~~~c~~L~ 159 (322)
..++.|+++++.-.... +...+++|+.|++++|.++..... ....+++|+.|++++ +.++. ..+......+++|+
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCS-SCCCBTTHHHHTTTTCTTCC
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCC-CCcCCcccchhhhcCCCCCC
Confidence 45778887664311000 013567888888888766653222 224567888888887 45553 12233335667888
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcC-CCCCEEeecCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCW 224 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~-~~L~~L~L~~c~ 224 (322)
.|.++.+.+..... ......+++|++|+|++|.++.. +...+ ++|+.|+|++|.
T Consensus 407 ~L~l~~N~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~ 461 (562)
T 3a79_B 407 TLDVSLNSLNSHAY-------DRTCAWAESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNR 461 (562)
T ss_dssp EEECTTSCCBSCCS-------SCCCCCCTTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSC
T ss_pred EEECCCCcCCCccC-------hhhhcCcccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCc
Confidence 88776555421000 00112455666666666655432 12223 456666666653
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.19 E-value=6.6e-09 Score=89.03 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=67.7
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC-CCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..++.|++++..-..........+++|+.|++++|. ++...- .....+++|++|++++|+.++.-... ....+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCC
Confidence 357778776643211111112357788888888874 543211 11245678888888765566532211 123567788
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCC---EEEecCc-ccCHHHHHHHHhcCCCCC-EEeecCCC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLK---RLEMAYH-VISTEIVLKILSSCALLE-FLDLRGCW 224 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~---~L~L~~~-~i~~~~l~~i~~~~~~L~-~L~L~~c~ 224 (322)
.|.+..+.+. + +.. ...+++|+ +|++++| .++.-.. ..+.++++|+ .|++++|.
T Consensus 109 ~L~l~~n~l~--~--lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 109 FLGIFNTGLK--M--FPD------LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEEEECCC--S--CCC------CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC
T ss_pred EEeCCCCCCc--c--ccc------cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCC
Confidence 8877655432 1 110 12445555 6666666 4432111 1123456666 66666653
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.18 E-value=9.8e-08 Score=90.66 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=74.4
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
+.++.|++++..-..........+++|+.|+|++|.++... . ...+++|++|+|++| .++.- ...++|+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l------~~~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN-YVQEL------LVGPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSS-EEEEE------EECTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCC-cCCCC------CCCCCcCE
Confidence 35777777664321111111245677777777777554311 1 345677777777763 43321 12255555
Q ss_pred eeccccccC--------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 161 LCRNMHPLD--------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 161 L~l~~~~l~--------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
|.++.+.+. ++++.+.......+ ..+++|++|+|++|.++......+...+++|++|+|++|...
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 555433221 11221211111112 246677777777776655433344445677777777776432
Q ss_pred CCChHHHHhcCCCCeeeCC
Q 020727 227 KLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 227 ~~~~~~l~~~~~~Lk~L~~ 245 (322)
.. .....+++|++|.+
T Consensus 183 ~~---~~~~~l~~L~~L~L 198 (487)
T 3oja_A 183 DV---KGQVVFAKLKTLDL 198 (487)
T ss_dssp EE---ECCCCCTTCCEEEC
T ss_pred cc---cccccCCCCCEEEC
Confidence 21 11123566666643
No 95
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.17 E-value=1.5e-07 Score=86.56 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-...-..+...+++|+.|+|+++.++..... ....+++|++|+++++ .++...... ...+++|+.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHV-FQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCC-CCCcCCHHH-hcCCCCCCE
Confidence 3456666655431111122234466677777766655432111 1234566666666663 443221111 134566666
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
|.++.+.+.. + ...+...+++|++|+|++|.++.... ..+..+++|++|++++|.
T Consensus 122 L~L~~n~l~~----l----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 122 LVLERNDLSS----L----PRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp EECCSSCCCC----C----CTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSC
T ss_pred EECCCCccCc----C----CHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCc
Confidence 6655443320 0 00111245666666666665442111 112345666666666654
No 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.17 E-value=1.4e-07 Score=84.55 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHH-HHHHhcCCCc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLL 158 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l-~~l~~~c~~L 158 (322)
..+|+.|++++..-...- ....++|++|.+.+|.++.... .....+++|+.|++++ +.++..++ ......+++|
T Consensus 99 l~~L~~L~Ls~n~l~~l~---~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELP---EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp CTTCCEEECCSSCCSBCC---SSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCS-SCCCGGGBCTTGGGGCTTC
T ss_pred CCCCCEEECCCCcCCccC---hhhcccccEEECCCCcccccCH-hHhcCCccccEEECCC-CcCCccCcChhhccCCCCc
Confidence 356888888764311100 0113678888888886653222 2335678888888887 45543221 2223456778
Q ss_pred ceeeccccc
Q 020727 159 VVLCRNMHP 167 (322)
Q Consensus 159 ~~L~l~~~~ 167 (322)
+.|.++.+.
T Consensus 174 ~~L~l~~n~ 182 (330)
T 1xku_A 174 SYIRIADTN 182 (330)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888776543
No 97
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.16 E-value=2.1e-08 Score=97.55 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=16.4
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c 223 (322)
.+++|++|+|++|.++.... ..+.++++|++|+|++|
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCC
Confidence 34555555555554432111 11234455555555555
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.15 E-value=1e-07 Score=84.34 Aligned_cols=148 Identities=22% Similarity=0.155 Sum_probs=73.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|.|++|.++.... . ..+++|++|++++ +.++. +......+++|+.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~Ls~-N~l~~--l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--D-GTLPVLGTLDLSH-NQLQS--LPLLGQTLPALTV 104 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--C-SCCTTCCEEECCS-SCCSS--CCCCTTTCTTCCE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--C-CCCCcCCEEECCC-CcCCc--CchhhccCCCCCE
Confidence 346677776543211111112346677777777765543211 1 3566777777776 44441 1122234566777
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+..-. ...+ ..+++|++|+|++|.++.. ...++..+++|+.|+|++|.... -.......+++|
T Consensus 105 L~l~~N~l~~l~-------~~~~-~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 174 (290)
T 1p9a_G 105 LDVSFNRLTSLP-------LGAL-RGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 174 (290)
T ss_dssp EECCSSCCCCCC-------SSTT-TTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTC
T ss_pred EECCCCcCcccC-------HHHH-cCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCC
Confidence 766555432100 0111 2566777777777765421 11223456677777777664332 222233455666
Q ss_pred eeeC
Q 020727 241 KVLG 244 (322)
Q Consensus 241 k~L~ 244 (322)
++|.
T Consensus 175 ~~L~ 178 (290)
T 1p9a_G 175 DTLL 178 (290)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6654
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.13 E-value=1.5e-07 Score=90.28 Aligned_cols=154 Identities=15% Similarity=0.058 Sum_probs=99.2
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
+.+++|++++..-..........+++|++|+|++|.++.... .....+++|++|++++ +.++......+ ..+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSD-NHLSSLSSSWF-GPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTT-SCCCSCCHHHH-TTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCC-CccCccCHHHh-ccCCCCcE
Confidence 469999998764211111112568999999999997764321 2234679999999998 56665444444 46899999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+...+. ......+++|++|++++|.+........+.++++|++|++++|..... .......+++|
T Consensus 103 L~Ls~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 174 (549)
T 2z81_A 103 LNLMGNPYQTLGV-------TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDI 174 (549)
T ss_dssp EECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEE
T ss_pred EECCCCcccccch-------hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccC
Confidence 9987765532111 011247899999999998732211112345789999999999864321 12233567788
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
++|.+
T Consensus 175 ~~L~l 179 (549)
T 2z81_A 175 HHLTL 179 (549)
T ss_dssp EEEEE
T ss_pred ceEec
Confidence 88854
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.12 E-value=1.5e-06 Score=82.85 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=82.6
Q ss_pred cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHH-HHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020727 79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS-IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 157 (322)
Q Consensus 79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~ 157 (322)
..+.++.|+++++.-..........+++|+.|.|++|.++.. .+......+++|++|++++ +.++..........+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC-CcCCcccccchhccCcc
Confidence 345677777766532211111124567777788877766642 2334445677788888777 45543221122234577
Q ss_pred cceeeccccccCCCCCCCCchHHHHHHhcC-CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhc
Q 020727 158 LVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 236 (322)
Q Consensus 158 L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~-p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~ 236 (322)
|+.|.++.+.+. .. +...+ ++|+.|+|++|.++ .+..-+..+++|++|+|++|...+... .....
T Consensus 401 L~~L~Ls~N~l~-------~~----~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~ 466 (520)
T 2z7x_B 401 LLSLNMSSNILT-------DT----IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPD-GIFDR 466 (520)
T ss_dssp CCEEECCSSCCC-------GG----GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTT
T ss_pred CCEEECcCCCCC-------cc----hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCH-HHhcc
Confidence 777766554431 11 11122 57777888777766 222222367777888877775332222 23345
Q ss_pred CCCCeeeCC
Q 020727 237 FPNLKVLGP 245 (322)
Q Consensus 237 ~~~Lk~L~~ 245 (322)
+++|++|.+
T Consensus 467 l~~L~~L~l 475 (520)
T 2z7x_B 467 LTSLQKIWL 475 (520)
T ss_dssp CTTCCEEEC
T ss_pred CCcccEEEC
Confidence 666666643
No 101
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.11 E-value=4.3e-07 Score=89.07 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=51.1
Q ss_pred hcCCCccEEeccCCCCCCHH-----------------HHHHHH-hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCC
Q 020727 127 GRLSAVTFLDLSYCSKIGAP-----------------ALEAIG-KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP 188 (322)
Q Consensus 127 ~~~~~L~~L~l~~c~~i~~~-----------------~l~~l~-~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p 188 (322)
..+++|++|+|++ +.++.. ....++ ..+++|++|.+..+.+. + .....+ ..++
T Consensus 203 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~-----~~p~~l-~~l~ 273 (636)
T 4eco_A 203 MRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--T-----KLPTFL-KALP 273 (636)
T ss_dssp GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--S-----SCCTTT-TTCS
T ss_pred hcccCCCEEECcC-CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--c-----cChHHH-hcCC
Confidence 3467777777777 345542 111111 15677777776554321 1 000112 2456
Q ss_pred CCCEEEecCcc-cCHHHHHHHHh------cCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 189 KLKRLEMAYHV-ISTEIVLKILS------SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 189 ~L~~L~L~~~~-i~~~~l~~i~~------~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
+|++|+|++|. ++...+..-+. .+++|++|++++|.............+++|++|.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEe
Confidence 66666666665 55412222111 2356666666665433211111234555555554
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=1.8e-07 Score=79.16 Aligned_cols=128 Identities=14% Similarity=0.087 Sum_probs=87.2
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|.|.++.++.... .....+++|+.|+|++ +.++.-...++ ..+++|+.|.++.+.+.. +. ..+.
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~-N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~----l~----~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSN-NQISELAPDAF-QGLRSLNSLVLYGNKITE----LP----KSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCS-SCCCEECTTTT-TTCSSCCEEECCSSCCCC----CC----TTTT
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCC-CcCCCcCHHHh-hCCcCCCEEECCCCcCCc----cC----HhHc
Confidence 589999999997764211 1234579999999998 56664322222 457999999988775531 11 1122
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
..+++|++|+|++|.++.... ..+..+++|++|+|++|...+.. ......+++|++|.+
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHL 159 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEEC
T ss_pred cCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEe
Confidence 478999999999998764322 23457899999999999654422 333457888998865
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=5.9e-07 Score=90.89 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=79.5
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC-CCH-H---HHHHHH---hcCCCccEEeccCCCCCCHHHHHH-
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSD-S---IVAQIA---GRLSAVTFLDLSYCSKIGAPALEA- 150 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~-~---~l~~l~---~~~~~L~~L~l~~c~~i~~~~l~~- 150 (322)
..+|+.|+++++.-...+......+++|+.|+|++|. ++. . .+..+. ..+|+|+.|+|++ +.++ .+..
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~--~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLE--EFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCC--BCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCC--ccCCh
Confidence 4579999998764211122223568999999999996 876 2 233332 3456999999998 5666 2322
Q ss_pred -HHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC-CCEEeecCCC
Q 020727 151 -IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCW 224 (322)
Q Consensus 151 -l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~-L~~L~L~~c~ 224 (322)
....+++|+.|.++.+.+. . +. .+ ..+++|++|+|++|.++ .+..-+..+++ |+.|+|++|.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~--~--lp-----~~-~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR--H--LE-----AF-GTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC--B--CC-----CC-CTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCCcc--c--ch-----hh-cCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence 3456789999988766542 1 11 11 35667777777776655 22222344555 7777776664
No 104
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.10 E-value=2.7e-07 Score=80.59 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=60.6
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...++.|+++++.-..........+++|+.|+|++|.++..... ....+++|++|+++++ .++...... ...+++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~ 127 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVET-NLASLENFP-IGHLKTLK 127 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEECCCC-CccccCchh-cccCCCCC
Confidence 35578888876532111111124567888888888765532211 2245678888888773 443211111 23567788
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCH
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 202 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~ 202 (322)
.|.++.+.+...+ +......+++|++|+|++|.++.
T Consensus 128 ~L~l~~n~l~~~~-------l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 128 ELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSSCCCE
T ss_pred EEECcCCccceec-------CchhhccCCCCCEEECCCCCCCc
Confidence 8776655432100 01112356777777777776543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.10 E-value=1.3e-07 Score=79.98 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=77.3
Q ss_pred CCeeEEEecCCCChHH-HHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 81 GSLRKLCVSGLHNDMM-FSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~-l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..++.|++++..-... ...+...+++|+.|+|++|.++...- .....+++|++|+|++ +.++..... ....+++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTS-NRLENVQHK-MFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS-SCCCCCCGG-GGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCC-CccCccCHh-HhcCCcCCC
Confidence 3467788765431111 01112467888888888886653211 1224568888888887 455432222 224568888
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
.|.++.+.+.... ...+ ..+++|++|+|++|.++.... ..+..+++|+.|+|++|...
T Consensus 109 ~L~Ls~N~l~~~~-------~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 109 TLMLRSNRITCVG-------NDSF-IGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBC-------TTSS-TTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCeEC-------HhHc-CCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCc
Confidence 8877665442110 1112 257888888888887654211 22346788888888887533
No 106
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.09 E-value=3.2e-07 Score=89.31 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=63.3
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020727 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.++.+.+++..-......+...+++|+.|+|++|.++..... ....+++|++|+|++| .++..... ....+++|+.|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L 128 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVL 128 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEE
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCC-cCCCCCHH-HHcCCCCCCEE
Confidence 356666655432112222334566777777777655432111 1234567777777763 44332111 12345667777
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.++.+.+. +. ...+...+++|++|+|++|.++.... ..+..+++|++|+|++|.
T Consensus 129 ~L~~n~l~--~l------~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 129 VLERNDLS--SL------PRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp ECCSSCCC--CC------CTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSC
T ss_pred EeeCCCCC--CC------CHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCC
Confidence 66554332 10 00111356666666666665443211 122355666666666664
No 107
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.08 E-value=4.5e-07 Score=83.23 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=17.4
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+|+|++|+|++|.++. +..-+..+++|+.|+|++|.
T Consensus 293 ~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSC
T ss_pred CCCCCCEEECCCCccee--cCccccccCcCCEEECCCCc
Confidence 35555555555555432 11112234555555555554
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.08 E-value=1.4e-07 Score=91.62 Aligned_cols=135 Identities=24% Similarity=0.103 Sum_probs=87.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..+++|+|++-.-..........+++|+.|+|++|.|+... ......+++|++|+|++ +.++.-.. .....+++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~-N~l~~l~~-~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG-NPIQSLAL-GAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTT-CCCCEECG-GGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccC-CcCCCCCH-HHhcCCCCCCE
Confidence 45899999764311111112346889999999999765311 11234679999999998 46653221 12356789999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
|.++.+.+..-. . .++ ..+++|++|+|++|.++...+...+..+++|++|++++|...
T Consensus 129 L~Ls~N~l~~l~----~---~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 129 LVAVETNLASLE----N---FPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EECTTSCCCCST----T---CCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCC----h---hhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 988766542110 0 112 378999999999998765434445567899999999988543
No 109
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.07 E-value=7.9e-07 Score=82.88 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=43.9
Q ss_pred CcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcC-CCceeeecccc
Q 020727 9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIG-PYCWQEIDIEE 58 (322)
Q Consensus 9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~-~~lw~~i~l~~ 58 (322)
-+..||+|++.+||+||+.+++++ |++|||+|+.++.+ +.+|+++-+..
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHH-HHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 356799999999999999999998 89999999999998 89999876543
No 110
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.07 E-value=1.1e-07 Score=92.42 Aligned_cols=133 Identities=20% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..+++|++++..-..........+++|+.|+|++|.++.... .....+++|++|+++++ .++......+ ..+++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~-~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGN-PIQSFSPGSF-SGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTC-CCCCCCTTSS-TTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCC-cccccChhhc-CCcccCCE
Confidence 457777776643211111122457778888887776553211 12245677888888773 4443222222 35677777
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
|.++.+.+.... ...+ ..+++|++|+|++|.++...+...+.++++|++|++++|.
T Consensus 109 L~L~~n~l~~~~-------~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 109 LVAVETKLASLE-------SFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTSCCCCSS-------SSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EEccCCcccccc-------cccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 776655432110 0012 3566777777777765532222334566777777777664
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.07 E-value=2.9e-07 Score=90.72 Aligned_cols=130 Identities=16% Similarity=0.009 Sum_probs=58.4
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020727 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 182 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~ 182 (322)
.+++|+.|+|++|.++... ......+++|++|+++++ .++.-...+ ...+++|++|.++.+.+.... ...
T Consensus 71 ~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~-------~~~ 140 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHNGLSSTK-------LGT 140 (680)
T ss_dssp HCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSSCCSCCC-------CCS
T ss_pred cccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCCcccccC-------chh
Confidence 4556666666655443210 011234556666666653 332111011 124556666655544331100 001
Q ss_pred HHhcCCCCCEEEecCcccCHHHHHHHH-hcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 183 IASTMPKLKRLEMAYHVISTEIVLKIL-SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 183 l~~~~p~L~~L~L~~~~i~~~~l~~i~-~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
+ ..+++|++|+|++|.++......+. ..+++|+.|++++|.... ........+++|+.|.
T Consensus 141 ~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 141 Q-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF 201 (680)
T ss_dssp S-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEE
T ss_pred h-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhh
Confidence 1 2566777777777655432222221 145667777777664322 1122234555666654
No 112
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.06 E-value=9.1e-07 Score=79.29 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=53.3
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...|+.|++++..-..........+++|+.|+|++|.++.- . ...+++|++|++++ +.++......+ ..+++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~--~~~~~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~ 148 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQELRVHE-NEITKVRKSVF-NGLNQMI 148 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCEEECCS-SCCCBBCHHHH-TTCTTCC
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--C--hhhcccccEEECCC-CcccccCHhHh-cCCcccc
Confidence 45689999987542211111234688999999999866521 1 01237899999998 56664333333 4679999
Q ss_pred eeecccccc
Q 020727 160 VLCRNMHPL 168 (322)
Q Consensus 160 ~L~l~~~~l 168 (322)
.|.+..+.+
T Consensus 149 ~L~l~~n~l 157 (330)
T 1xku_A 149 VVELGTNPL 157 (330)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 998876654
No 113
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.05 E-value=1.5e-07 Score=90.64 Aligned_cols=132 Identities=25% Similarity=0.139 Sum_probs=63.1
Q ss_pred CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020727 82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161 (322)
Q Consensus 82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L 161 (322)
.++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++.....++ ..+++|++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTG-NPIQSLALGAF-SGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTT-CCCCEECTTTT-TTCTTCCEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcC-CcCCccCHhhh-cCccccccc
Confidence 46666666543111111112346677777777765543211 1223456777777776 34433221122 345667776
Q ss_pred eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
.+..+.+..-+ ...+ ..+++|++|+|++|.++...+...+.++++|++|++++|.
T Consensus 106 ~L~~n~l~~l~-------~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 106 VAVETNLASLE-------NFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTSCCCCST-------TCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccccccCC-------Cccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 66544331100 0011 2566666666666655432222223456666666666654
No 114
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.03 E-value=2.1e-07 Score=91.68 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=6.3
Q ss_pred CCeeEEEecCC
Q 020727 81 GSLRKLCVSGL 91 (322)
Q Consensus 81 ~~l~~L~l~~~ 91 (322)
+.++.|++++.
T Consensus 405 ~~L~~L~L~~N 415 (680)
T 1ziw_A 405 GHLEVLDLGLN 415 (680)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEeCCCC
Confidence 45666666543
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.02 E-value=2.1e-07 Score=91.31 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=55.7
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC-CCH-HHHHHHHh-----cCCCccEEeccCCCCCCHHHHHH--
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSD-SIVAQIAG-----RLSAVTFLDLSYCSKIGAPALEA-- 150 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~-~~l~~l~~-----~~~~L~~L~l~~c~~i~~~~l~~-- 150 (322)
..+|+.|+++++.-...+......+++|+.|+|++|. ++. .....+.. .+++|++|++++ +.++ .+..
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~--~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLK--TFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCS--SCCCHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCC--ccCchh
Confidence 4578999998764211111223468899999999997 887 33323322 348999999998 4665 2322
Q ss_pred HHhcCCCcceeecccccc
Q 020727 151 IGKHCKLLVVLCRNMHPL 168 (322)
Q Consensus 151 l~~~c~~L~~L~l~~~~l 168 (322)
....+++|+.|.++.+.+
T Consensus 325 ~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp HHTTCTTCCEEECCSCCC
T ss_pred hhccCCCCCEEeCcCCcC
Confidence 345678899998766544
No 116
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.02 E-value=7.6e-08 Score=97.48 Aligned_cols=136 Identities=18% Similarity=0.079 Sum_probs=62.0
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
+.+++|++++..-..........+++|+.|+|++|......-......+++|++|+|++ +.++.....++ ..+++|++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~-~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAF-QGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSS-CSCSSCCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHc-cCCcccCE
Confidence 34666666553211111111234566666666666221110011224456666666666 34433211122 24566666
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
|.++.+.+.-... . ......+++|++|+|++|.++.......+.++++|++|+|++|.
T Consensus 102 L~Ls~n~l~~~~~---~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 102 LRLYFCGLSDAVL---K---DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp EECTTCCCSSCCS---T---TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred eeCcCCCCCcccc---c---CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 6665443321000 0 00012466666666666655433222234456666666666654
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.02 E-value=3.9e-06 Score=78.96 Aligned_cols=51 Identities=20% Similarity=0.078 Sum_probs=23.5
Q ss_pred cCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020727 186 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 244 (322)
Q Consensus 186 ~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~ 244 (322)
.+++|++|++++|. ++.. -+..+++|+.|++++|...... ...+++|+.|.
T Consensus 146 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~ 197 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLN 197 (457)
T ss_dssp TCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEE
T ss_pred cCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec----cccCCCCCEEE
Confidence 44555555555552 2111 0224556666666655322211 34556666664
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.01 E-value=3.1e-07 Score=83.69 Aligned_cols=153 Identities=19% Similarity=0.068 Sum_probs=92.9
Q ss_pred CCeeEEEecCCCChHHHHHHHH-hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAE-NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~-~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..++.|+|++..-......... .+++|+.|+|++|.++...- .....+++|++|+|++ +.++.-.. .....+++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSS-NHLHTLDE-FLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS-SCCCEECT-TTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCC-CcCCcCCH-HHhCCCcCCC
Confidence 4588999976532111111122 68899999999997764221 1234679999999998 56653221 1234679999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHH--HhcCCCCCEEeecCCCCcCCChHHHHhcC
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI--LSSCALLEFLDLRGCWDVKLDDKFMKGNF 237 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i--~~~~~~L~~L~L~~c~~~~~~~~~l~~~~ 237 (322)
.|.++.+.+.. -....+ ..+++|++|+|++|.++.-....+ ...+++|+.|+|++|....... .....+
T Consensus 116 ~L~L~~N~i~~-------~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l 186 (361)
T 2xot_A 116 VLLLYNNHIVV-------VDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKL 186 (361)
T ss_dssp EEECCSSCCCE-------ECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHS
T ss_pred EEECCCCcccE-------ECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhc
Confidence 99887665421 111122 368999999999998764221111 1468999999999986443332 233455
Q ss_pred CC--CeeeCC
Q 020727 238 PN--LKVLGP 245 (322)
Q Consensus 238 ~~--Lk~L~~ 245 (322)
+. |+.|.+
T Consensus 187 ~~~~l~~l~l 196 (361)
T 2xot_A 187 PAWVKNGLYL 196 (361)
T ss_dssp CHHHHTTEEC
T ss_pred cHhhcceEEe
Confidence 54 355543
No 119
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=1.2e-06 Score=88.65 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=99.0
Q ss_pred CCeeEEEecCCCChH------------------HHHHH-HHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCC
Q 020727 81 GSLRKLCVSGLHNDM------------------MFSLI-AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCS 141 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~------------------~l~~l-~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 141 (322)
.+|+.|+|++..-.. ....+ ...+++|+.|+|++|.+.... ......+++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCC
Confidence 568999997654221 11111 126899999999998554322 2334568999999999953
Q ss_pred CCCH-HHHHHHH------hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC
Q 020727 142 KIGA-PALEAIG------KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL 214 (322)
Q Consensus 142 ~i~~-~~l~~l~------~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~ 214 (322)
.++. .....+. ..+|+|+.|.++.+.+. . +.. ...+ ..+++|++|+|++|.++ .+. .+..+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~--ip~--~~~l-~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~ 596 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--E--FPA--SASL-QKMVKLGLLDCVHNKVR--HLE-AFGTNVK 596 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--B--CCC--HHHH-TTCTTCCEEECTTSCCC--BCC-CCCTTSE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC--c--cCC--hhhh-hcCCCCCEEECCCCCcc--cch-hhcCCCc
Confidence 3776 3333332 35579999988766553 1 111 1133 37999999999999887 333 4567899
Q ss_pred CCEEeecCCCCcCCChHHHHhcCCC-CeeeCC
Q 020727 215 LEFLDLRGCWDVKLDDKFMKGNFPN-LKVLGP 245 (322)
Q Consensus 215 L~~L~L~~c~~~~~~~~~l~~~~~~-Lk~L~~ 245 (322)
|+.|+|++|...... .. ...+++ |++|.+
T Consensus 597 L~~L~Ls~N~l~~lp-~~-l~~l~~~L~~L~L 626 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIP-ED-FCAFTDQVEGLGF 626 (876)
T ss_dssp ESEEECCSSCCSCCC-TT-SCEECTTCCEEEC
T ss_pred ceEEECcCCccccch-HH-HhhccccCCEEEC
Confidence 999999998644222 12 345666 888764
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.00 E-value=5.4e-07 Score=87.46 Aligned_cols=129 Identities=17% Similarity=0.060 Sum_probs=86.2
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++++.|+|++|.|+.-.- .....+++|++|+|++| .++.-.-.+ ...+++|++|.++.+.+.. -... ..
T Consensus 52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~l~~-------l~~~-~f 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQS-------LALG-AF 120 (635)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCCE-------ECGG-GG
T ss_pred cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCcCCC-------CCHH-Hh
Confidence 479999999997764211 12356799999999994 555321112 2467999999887665421 1111 22
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
..+++|++|+|++|.++.-.- ..+.++++|++|+|++|.............+++|++|.+
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 478999999999998764211 124578999999999986443222344567888998864
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.99 E-value=9.8e-06 Score=76.19 Aligned_cols=136 Identities=17% Similarity=0.050 Sum_probs=97.2
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-... .. ...+++|+.|+|++|.++... ...+++|++|+++++ .++.-. ...+++|+.
T Consensus 42 ~~L~~L~Ls~n~l~~~-~~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-TG-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC-TT-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC-hh-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCC-CCceee----cCCCCcCCE
Confidence 5689999987532111 12 356899999999999776531 456799999999984 565532 356899999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L 240 (322)
|.++.+.+. +. . ...+++|++|++++|.++... +..+++|+.|++++|..++.- -...+++|
T Consensus 111 L~L~~N~l~--~l--------~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L 172 (457)
T 3bz5_A 111 LNCDTNKLT--KL--------D-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL---DVTPQTQL 172 (457)
T ss_dssp EECCSSCCS--CC--------C-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred EECCCCcCC--ee--------c-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc---ccccCCcC
Confidence 988766542 21 1 347899999999999877631 457899999999999655421 23567888
Q ss_pred eeeCC
Q 020727 241 KVLGP 245 (322)
Q Consensus 241 k~L~~ 245 (322)
++|.+
T Consensus 173 ~~L~l 177 (457)
T 3bz5_A 173 TTLDC 177 (457)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 88865
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.99 E-value=5.4e-07 Score=73.27 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|.++++.++.. .......+++|++|++++ +.++.-. ......+++|+.|.++.+.+. +. . ....
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~l~~L~~L~l~~N~l~--~~--~----~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQ-NQIQSLP-DGVFDKLTKLTILYLHENKLQ--SL--P----NGVF 96 (177)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCC--CC--C----TTTT
T ss_pred CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCC-CcceEeC-hhHccCCCccCEEECCCCCcc--cc--C----HHHh
Confidence 4677777777654421 111224457777777776 3444211 111234566777766554432 10 0 0112
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020727 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 225 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~ 225 (322)
..+++|++|+|++|.++.- ...++..+++|++|+|++|..
T Consensus 97 ~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred hCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCe
Confidence 3577788888887776521 112334577888888877753
No 123
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.98 E-value=3.1e-07 Score=82.46 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=40.5
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..+|+.|+++++.-..........+++|+.|+|++|.++.- .. ..+++|++|++++ +.++.-. ......+++|+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~--~~~~~L~~L~l~~-n~i~~~~-~~~~~~l~~L~ 150 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PP--NLPSSLVELRIHD-NRIRKVP-KGVFSGLRNMN 150 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC--CS--SCCTTCCEEECCS-SCCCCCC-SGGGSSCSSCC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc--Cc--cccccCCEEECCC-CccCccC-HhHhCCCccCC
Confidence 35688888876532111111124567788888877755421 10 1125666666666 3443211 11123456666
Q ss_pred eeecccc
Q 020727 160 VLCRNMH 166 (322)
Q Consensus 160 ~L~l~~~ 166 (322)
.|.+..+
T Consensus 151 ~L~l~~n 157 (332)
T 2ft3_A 151 CIEMGGN 157 (332)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 6665444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=1.2e-06 Score=84.75 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=87.3
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-.. +.. ...+++|+.|+|++|.++ .+......+++|+.|+|++ +.++. +. -...+++|+.
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~-N~l~~--lp-~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASD-NALEN--VD-GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCS-SCCCC--CG-GGTTCSSCCE
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCC-CCCCC--Cc-ccCCCCCCcE
Confidence 358999998754221 122 456889999999999777 3333456789999999998 67764 33 2356899999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHH--HHHHHHhcCCCCCEEee
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDL 220 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~--~l~~i~~~~~~L~~L~L 220 (322)
|.++.+.+. +.. ....+ ..+++|+.|+|++|.++.. ....+...+|+|+.|++
T Consensus 513 L~Ls~N~l~--~~~----~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQ--QSA----AIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCC--SSS----TTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCC--CCC----CcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 988766542 110 01223 3799999999999987543 34456667999999975
No 125
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.98 E-value=2.6e-06 Score=79.14 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=43.5
Q ss_pred CCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeec
Q 020727 7 FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEID 55 (322)
Q Consensus 7 ~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~ 55 (322)
...+..||+|++.+||+||+..++.+ +++|||+|+.++.++.+|+++-
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~-~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHH-HHHHhHHHHhhcCchhHhhhhe
Confidence 44577899999999999999999998 7999999999999999999764
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.96 E-value=3.8e-07 Score=75.74 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=85.0
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...++.|++++..-.. +. ....+++|+.|++++|.++. +......+++|+.|++++ +.++. +..+ ..+++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~-N~l~~--l~~~-~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY-NQIAS--LSGI-EKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEE-EECCC--HHHH-HHHHHSS
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcC-CcCCc--CCcc-ccCCCCC
Confidence 4569999997642111 12 23467999999999996552 333444568999999998 46664 3333 3568999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHH---------HHHHHHhcCCCCCEEe
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---------IVLKILSSCALLEFLD 219 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~---------~l~~i~~~~~~L~~L~ 219 (322)
.|.+..+.+ ..-........+++|++|++++|.++.. ....++..+|+|+.|+
T Consensus 119 ~L~l~~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcC-------CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 998876654 2222222334899999999999986543 2334567899999998
No 127
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.94 E-value=1e-07 Score=85.12 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=96.0
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
...|+.|++++..-...+......+++|+.|+|++|.++... ......+++|++|++++ +.++......+....++|+
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCC
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-ChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCc
Confidence 356899998764321111112346889999999998554211 12234578999999998 4665333334443334788
Q ss_pred eeeccccccC----------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020727 160 VLCRNMHPLD----------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 223 (322)
Q Consensus 160 ~L~l~~~~l~----------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c 223 (322)
.|.++.+.+. +.++.+.... ......+++|+.|+|++|.++.... .+..+++|++|+|++|
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNN 254 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSS
T ss_pred EEECcCCeeeccCChHHhCCcccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCC
Confidence 8877654332 2222111111 1222468999999999998763211 1456799999999998
Q ss_pred CCcCCChHHHHhcCCCCeeeCC
Q 020727 224 WDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 224 ~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
...... ......+++|++|.+
T Consensus 255 ~l~~~~-p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 255 RIYGTL-PQGLTQLKFLHSLNV 275 (313)
T ss_dssp CCEECC-CGGGGGCTTCCEEEC
T ss_pred cccCcC-ChHHhcCcCCCEEEC
Confidence 644222 223467889999865
No 128
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.94 E-value=1.2e-06 Score=85.16 Aligned_cols=120 Identities=22% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020727 106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 185 (322)
Q Consensus 106 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~ 185 (322)
+|+.|.|.+|.++.. .....+++|+.|+|++ +.++......+ ..+++|+.|.++.+.+.- +.....
T Consensus 233 ~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~---------l~~~~~ 298 (597)
T 3oja_B 233 ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSY-NELEKIMYHPF-VKMQRLERLYISNNRLVA---------LNLYGQ 298 (597)
T ss_dssp CCCEEECCSSCCCCC---GGGGGCTTCSEEECCS-SCCCEEESGGG-TTCSSCCEEECTTSCCCE---------EECSSS
T ss_pred CCCEEECCCCCCCCC---hhhccCCCCCEEECCC-CccCCCCHHHh-cCccCCCEEECCCCCCCC---------CCcccc
Confidence 455555555544432 2234567777777776 45543322222 345777777665544311 001113
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+|+|+.|+|++|.++. +..-+..+++|+.|+|++|...+.. ...+++|+.|.+
T Consensus 299 ~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l 352 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTL 352 (597)
T ss_dssp CCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEEC
T ss_pred cCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEe
Confidence 57888888888887662 2222346788888888888644321 456677777764
No 129
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.92 E-value=3.8e-07 Score=92.38 Aligned_cols=132 Identities=16% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.++|+.|+|++|.++..... ....+++|++|+|++|..+..-...+ ...+++|+.|.++.+.+.. ....++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l~~-------~~p~~~ 93 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYF-------LHPDAF 93 (844)
T ss_dssp CTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCCCE-------ECTTSS
T ss_pred CCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcCcc-------cCHhHc
Confidence 47899999999977643222 23567999999999964433211122 2578999999887665421 111222
Q ss_pred HhcCCCCCEEEecCcccCHHHHHH-HHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~-i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
..+++|++|+|++|.++...+.. .+..+++|++|+|++|...+.........+++|++|.+
T Consensus 94 -~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 94 -QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp -CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred -cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 37999999999999876532221 24578999999999996544322234568888988864
No 130
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.92 E-value=2.2e-06 Score=79.46 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=42.4
Q ss_pred CcccCCHH----HHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecc
Q 020727 9 HWDELIPD----ALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDI 56 (322)
Q Consensus 9 ~w~~LP~e----iL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l 56 (322)
.+..||+| ++.+||+||+..++.+ |++|||+|+.++.++.+|+++-.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~w~~~~~ 60 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLIE 60 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcChHHHHHHHH
Confidence 35679999 9999999999999998 79999999999999999997743
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.88 E-value=1.1e-06 Score=74.40 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=87.2
Q ss_pred CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020727 104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183 (322)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l 183 (322)
.+.++.|.|++|.++..........+++|++|+|++ +.++.-...+ ...+++|+.|.++.+.+.. -....
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~-------~~~~~- 100 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGA-FEGASGVNEILLTSNRLEN-------VQHKM- 100 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSCCCC-------CCGGG-
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHH-hCCCCCCCEEECCCCccCc-------cCHhH-
Confidence 346899999999776432122245689999999998 5666432222 2457999999887665521 11112
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
...+++|++|+|++|.++.... ..+..+++|++|+|++|...+.. ......+++|++|.+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL 160 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred hcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence 2478999999999998764321 22347899999999998644322 233457888998865
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.88 E-value=5.6e-07 Score=81.95 Aligned_cols=138 Identities=17% Similarity=0.044 Sum_probs=85.8
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 159 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~ 159 (322)
..+|+.|+|++..-..........+++|+.|+|++|.++... ......+++|+.|+|++ +.++.-...+ ...+++|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~-N~i~~~~~~~-~~~l~~L~ 139 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYN-NHIVVVDRNA-FEDMAQLQ 139 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS-SCCCEECTTT-TTTCTTCC
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCCCEEECCC-CcccEECHHH-hCCcccCC
Confidence 467899999765321111112346889999999999765321 12234679999999998 5665432222 24578999
Q ss_pred eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC--CCEEeecCCCCc
Q 020727 160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL--LEFLDLRGCWDV 226 (322)
Q Consensus 160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~--L~~L~L~~c~~~ 226 (322)
.|.++.+.+.. +....+..+ ..+++|++|+|++|.++.-... .+..++. |+.|+|.+|+..
T Consensus 140 ~L~L~~N~l~~----l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 140 KLYLSQNQISR----FPVELIKDG-NKLPKLMLLDLSSNKLKKLPLT-DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCS----CCGGGTC-----CTTCCEEECCSSCCCCCCHH-HHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCcCCe----eCHHHhcCc-ccCCcCCEEECCCCCCCccCHH-HhhhccHhhcceEEecCCCcc
Confidence 99887765531 111111111 3689999999999987643322 2345665 588999998643
No 133
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.86 E-value=9.8e-07 Score=79.20 Aligned_cols=156 Identities=18% Similarity=0.075 Sum_probs=87.2
Q ss_pred CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH-HHHhcCCCc
Q 020727 80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE-AIGKHCKLL 158 (322)
Q Consensus 80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~-~l~~~c~~L 158 (322)
...|+.|++++..-...-. ...++|++|++++|.++... ......+++|++|++++ +.++..++. .....+ +|
T Consensus 101 l~~L~~L~L~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPP---NLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp CTTCCEEECCSSCCCSCCS---SCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CC
T ss_pred cCCCCEEECCCCcCCccCc---cccccCCEEECCCCccCccC-HhHhCCCccCCEEECCC-CccccCCCCcccccCC-cc
Confidence 4568899987643111000 11268999999888665321 12235678899999888 455432211 111111 45
Q ss_pred ceeeccccc--------------cCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 159 VVLCRNMHP--------------LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 159 ~~L~l~~~~--------------l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
+.|.++.+. +++.++.+.......+ ..+++|++|+|++|.++.... ..+..+++|+.|+|++|.
T Consensus 175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSC
T ss_pred CEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCc
Confidence 555543322 1222222222211222 368899999999987665321 124578999999999885
Q ss_pred CcCCChHHHHhcCCCCeeeCC
Q 020727 225 DVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 225 ~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
...... . ...+++|++|.+
T Consensus 253 l~~lp~-~-l~~l~~L~~L~l 271 (332)
T 2ft3_A 253 LSRVPA-G-LPDLKLLQVVYL 271 (332)
T ss_dssp CCBCCT-T-GGGCTTCCEEEC
T ss_pred CeecCh-h-hhcCccCCEEEC
Confidence 443222 2 457888888865
No 134
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=3e-05 Score=67.38 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHhcCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC--CCHHHHHHHHhcCCCccEEeccCCC
Q 020727 64 QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE--MSDSIVAQIAGRLSAVTFLDLSYCS 141 (322)
Q Consensus 64 ~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~ 141 (322)
.+..+..+-..+..|....-+.|+++.+..+..+... .+.++.+. .-...+..+...+|+|++|+|++ +
T Consensus 110 ~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~--------~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~-N 180 (267)
T 3rw6_A 110 KPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ--------NIDVVLNRRSCMAATLRIIEENIPELLSLNLSN-N 180 (267)
T ss_dssp CHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHT--------TCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTT-S
T ss_pred CHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhc--------CccccCCHHHHHHHHHHHHHhhCCCCCEEECCC-C
Confidence 3455566666667788777888998876555544431 12233331 11223333445677888888887 5
Q ss_pred CCC
Q 020727 142 KIG 144 (322)
Q Consensus 142 ~i~ 144 (322)
.++
T Consensus 181 ~l~ 183 (267)
T 3rw6_A 181 RLY 183 (267)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.84 E-value=1.8e-06 Score=71.47 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|.|.++.++. +......+++|+.|+|++ +.++.-...+ ...+++|+.|.++.+.+.... ..++
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~-------~~~f- 98 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSN-NRISTLSNQS-FSNMTQLLTLILSYNRLRCIP-------PRTF- 98 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCCBCC-------TTTT-
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCC-CcCCEeCHhH-ccCCCCCCEEECCCCccCEeC-------HHHh-
Confidence 467777777775552 212334567777777776 4554321111 234567777766655432111 0112
Q ss_pred hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020727 185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 225 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~ 225 (322)
..+++|++|+|++|.++.-. ...+..+++|+.|+|+++..
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCe
Confidence 35778888888888765311 12234677888888887753
No 136
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.81 E-value=4.2e-06 Score=80.64 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=17.3
Q ss_pred hCCCCCEEecCCCCCCHH-HHHHHHhcCCCccEEeccC
Q 020727 103 NAGSLQTLRLPRSEMSDS-IVAQIAGRLSAVTFLDLSY 139 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~ 139 (322)
.+++|+.|.|++|.++.. .+......+++|+.|++++
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 345555555555544421 1122223445555555555
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.78 E-value=6.9e-07 Score=73.85 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020727 106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 185 (322)
Q Consensus 106 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~ 185 (322)
+|+.|.|.++.++......+...+++|++|+|++ +.++.....++ ..+++|+.|.++.+.+.... ...+ .
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-------~~~~-~ 99 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAF-EGASHIQELQLGENKIKEIS-------NKMF-L 99 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTT-TTCTTCCEEECCSCCCCEEC-------SSSS-T
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHc-CCcccCCEEECCCCcCCccC-------HHHh-c
Confidence 6677777776554321111234567777777776 45543211122 34567777766555432100 0111 3
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
.+++|++|+|++|.++.... ..+..+++|++|+|+++...
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence 57888888888887654211 22346788889988887543
No 138
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.66 E-value=1e-06 Score=75.24 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=83.6
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccc-cccCCCCCCCCchHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAI 183 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~-~~l~~~~~~~~~~~~~~l 183 (322)
++|+.|+|+++.++...- .....+++|++|+++++..++.-... ....+++|++|.+.. +.+..-. .. .
T Consensus 31 ~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~-------~~-~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYID-------PD-A 100 (239)
T ss_dssp TTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEEC-------TT-S
T ss_pred CcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcC-------HH-H
Confidence 489999999997764221 12346799999999985335432111 125689999999875 4432100 01 1
Q ss_pred HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCC---EEeecCCCCcCCChHHHHhcCCCCe-eeCC
Q 020727 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLE---FLDLRGCWDVKLDDKFMKGNFPNLK-VLGP 245 (322)
Q Consensus 184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~---~L~L~~c~~~~~~~~~l~~~~~~Lk-~L~~ 245 (322)
...+++|++|++++|.++. +.. +..+++|+ .|++++|..++.-.......+++|+ +|.+
T Consensus 101 f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 2368999999999998764 222 45778888 9999998444322223346788888 8864
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.59 E-value=6.2e-05 Score=73.46 Aligned_cols=53 Identities=11% Similarity=-0.037 Sum_probs=31.0
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+++|+.|+|++|.++. +. ..+++|+.|+|++|...... .. ...+++|+.|.+
T Consensus 239 ~l~~L~~L~Ls~N~L~~--lp---~~~~~L~~L~Ls~N~L~~lp-~~-l~~l~~L~~L~L 291 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS--LP---MLPSGLLSLSVYRNQLTRLP-ES-LIHLSSETTVNL 291 (622)
T ss_dssp CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCCSCC-GG-GGGSCTTCEEEC
T ss_pred CCCcCcEEECCCCCCCc--CC---cccccCcEEeCCCCCCCcCC-HH-HhhccccCEEEe
Confidence 45677777777776552 11 15567777777777433221 22 356677777754
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.58 E-value=5.8e-06 Score=67.04 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=72.1
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 160 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~ 160 (322)
..++.|++++..-..........+++|+.|+|++|.++.. .......+++|++|++++ +.++.-. ......+++|+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-N~l~~~~-~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHE-NKLQSLP-NGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCC-CCccccC-HHHhhCCcccCE
Confidence 4689999987532211122234678999999999976632 112234679999999998 5665321 122346789999
Q ss_pred eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccC
Q 020727 161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS 201 (322)
Q Consensus 161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~ 201 (322)
|.++.+.+. +. . ..+...+++|++|+|++|.++
T Consensus 105 L~l~~N~l~--~~--~----~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 105 LALDTNQLK--SV--P----DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSSCCS--CC--C----TTTTTTCTTCCEEECCSSCBC
T ss_pred EECcCCcce--Ee--C----HHHhcCCcccCEEEecCCCee
Confidence 998766553 11 1 112346899999999999865
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.54 E-value=5.2e-06 Score=82.61 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHH
Q 020727 101 AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180 (322)
Q Consensus 101 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~ 180 (322)
...+++|+.|+|++|.+.. +..-...+++|++|+|++ +.++ .+..-...+++|+.|.|+.+.+. . +..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~-N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~--lp~--- 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNG-NSLT--ELPAEIKNLSNLRVLDLSHNRLT--S--LPA--- 287 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTT-SCCS--CCCGGGGGGTTCCEEECTTSCCS--S--CCS---
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeC-CcCc--ccChhhhCCCCCCEEeCcCCcCC--c--cCh---
Confidence 3456788888888885541 111122578888888887 4665 22222245688888877766553 1 111
Q ss_pred HHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020727 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 225 (322)
Q Consensus 181 ~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~ 225 (322)
.+ ..+++|++|+|++|.++. +..-+..+++|+.|+|++|..
T Consensus 288 -~~-~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 288 -EL-GSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp -SG-GGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred -hh-cCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence 12 367788888888887652 222245678888888888753
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.53 E-value=1.3e-05 Score=79.79 Aligned_cols=106 Identities=23% Similarity=0.196 Sum_probs=70.7
Q ss_pred HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHH
Q 020727 124 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE 203 (322)
Q Consensus 124 ~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~ 203 (322)
.....+++|+.|+|++ +.+.. .-..+ ..+++|+.|.|+.+.+. . +. . .+ ..+++|+.|+|++|.|+
T Consensus 218 ~~~~~l~~L~~L~Ls~-n~l~~-l~~~~-~~l~~L~~L~Ls~N~l~--~--lp-~---~~-~~l~~L~~L~Ls~N~l~-- 283 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSN-LQIFN-ISANI-FKYDFLTRLYLNGNSLT--E--LP-A---EI-KNLSNLRVLDLSHNRLT-- 283 (727)
T ss_dssp ----CCCCCCEEECTT-SCCSC-CCGGG-GGCCSCSCCBCTTSCCS--C--CC-G---GG-GGGTTCCEEECTTSCCS--
T ss_pred hhhccCCCCcEEECCC-CCCCC-CChhh-cCCCCCCEEEeeCCcCc--c--cC-h---hh-hCCCCCCEEeCcCCcCC--
Confidence 3445679999999998 45542 11122 26899999988776553 1 11 1 23 47899999999999987
Q ss_pred HHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 204 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 204 ~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.+..-+..+++|++|+|++|...... .. ...+++|++|.+
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~~lp-~~-~~~l~~L~~L~L 323 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVTTLP-WE-FGNLCNLQFLGV 323 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCCCCC-SS-TTSCTTCCCEEC
T ss_pred ccChhhcCCCCCCEEECCCCCCCccC-hh-hhcCCCccEEeC
Confidence 33333567899999999999543322 22 467888888864
No 143
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.47 E-value=3.2e-05 Score=74.67 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=23.6
Q ss_pred CCCCEEEecCcccCHHHH-H-HHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 188 PKLKRLEMAYHVISTEIV-L-KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 188 p~L~~L~L~~~~i~~~~l-~-~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
++|+.|+|++|.|+.-.. . .+....+.|+.|+|++|..... ...+. .+++|++|.+
T Consensus 180 ~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~-~l~~L~~L~L 237 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENIL-SLDPTCTIIL 237 (571)
T ss_dssp TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCC-CGGGG-GSCTTEEEEC
T ss_pred CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceec-CHHHh-cCCCCCEEEe
Confidence 566666666665441000 0 1111122236666666643322 22222 2666666653
No 144
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.47 E-value=7.3e-05 Score=72.94 Aligned_cols=77 Identities=14% Similarity=0.010 Sum_probs=50.5
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020727 130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 209 (322)
Q Consensus 130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~ 209 (322)
++|+.|++++ +.++. +...+++|+.|.++.+.+. . +...+++|+.|+|++|.++ .+...+
T Consensus 221 ~~L~~L~Ls~-N~L~~-----lp~~l~~L~~L~Ls~N~L~--~----------lp~~~~~L~~L~Ls~N~L~--~lp~~l 280 (622)
T 3g06_A 221 SGLKELIVSG-NRLTS-----LPVLPSELKELMVSGNRLT--S----------LPMLPSGLLSLSVYRNQLT--RLPESL 280 (622)
T ss_dssp TTCCEEECCS-SCCSC-----CCCCCTTCCEEECCSSCCS--C----------CCCCCTTCCEEECCSSCCC--SCCGGG
T ss_pred CCCCEEEccC-CccCc-----CCCCCCcCcEEECCCCCCC--c----------CCcccccCcEEeCCCCCCC--cCCHHH
Confidence 5666666665 34432 1144566777766555432 1 1115789999999999887 333446
Q ss_pred hcCCCCCEEeecCCCCc
Q 020727 210 SSCALLEFLDLRGCWDV 226 (322)
Q Consensus 210 ~~~~~L~~L~L~~c~~~ 226 (322)
.++++|+.|+|++|...
T Consensus 281 ~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGSCTTCEEECCSCCCC
T ss_pred hhccccCEEEecCCCCC
Confidence 68999999999998643
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.45 E-value=2.4e-05 Score=64.55 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=79.3
Q ss_pred CEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcC
Q 020727 108 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 187 (322)
Q Consensus 108 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~ 187 (322)
+.++++++.++.. .. .-.++|++|++++ +.++. +......+++|+.|.++.+.+..- ...++ ..+
T Consensus 13 ~~l~~~~~~l~~i--p~--~~~~~l~~L~L~~-n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i-------~~~~f-~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVL--PK--GIPRDVTELYLDG-NQFTL--VPKELSNYKHLTLIDLSNNRISTL-------SNQSF-SNM 77 (193)
T ss_dssp TEEECTTSCCSSC--CS--CCCTTCCEEECCS-SCCCS--CCGGGGGCTTCCEEECCSSCCCCC-------CTTTT-TTC
T ss_pred CEEEcCCCCCCcC--CC--CCCCCCCEEECCC-CcCch--hHHHhhcccCCCEEECCCCcCCEe-------CHhHc-cCC
Confidence 5677777755421 10 1237899999998 56663 212345679999998876655311 11122 378
Q ss_pred CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
++|++|+|++|.++.... ..+.++++|+.|+|++|.... -.......+++|+.|.+
T Consensus 78 ~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEe
Confidence 999999999998764322 124578999999999986443 22333457888998865
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=4.6e-05 Score=68.17 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCC-EEeec
Q 020727 143 IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE-FLDLR 221 (322)
Q Consensus 143 i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~-~L~L~ 221 (322)
+....+..+...|++|+.|.+..+.+.. -...++ ..|++|+.|.|..+ ++.-+ ...+.+|++|+ .|.+.
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------I~~~aF-~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATT-------IPDFTF-AQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELP 282 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCE-------ECTTTT-TTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEEC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcce-------ecHhhh-hCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEc
Confidence 3444555666678889988876443211 111122 36788888888776 22111 11235778888 88887
Q ss_pred CCCCcCCChHHHHhcCCCCeeeCC
Q 020727 222 GCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 222 ~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
. .++.-+...+..|++|+.|.+
T Consensus 283 ~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 283 A--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp T--TCCEECTTTTTTCTTEEEEEE
T ss_pred c--cceEEchhhhhCCccCCEEEe
Confidence 6 333223344567888888753
No 147
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.32 E-value=4.7e-05 Score=73.46 Aligned_cols=39 Identities=8% Similarity=-0.195 Sum_probs=27.3
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
..+.|+.|+|++|.|+. +..-+..+++|+.|+|++|...
T Consensus 205 ~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 205 SEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ---CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCC
T ss_pred ccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCC
Confidence 34555999999998873 2222335899999999999644
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=0.00019 Score=62.27 Aligned_cols=90 Identities=23% Similarity=0.230 Sum_probs=61.1
Q ss_pred HHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCC
Q 020727 149 EAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 228 (322)
Q Consensus 149 ~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~ 228 (322)
..+...+|+|+.|.++.+.+. +. ..+..+...+|+|+.|+|++|.|++..-..-+..+ +|++|+|++|+....
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~--~l----~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLY--RL----DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCC--CC----GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG
T ss_pred HHHHhhCCCCCEEECCCCCCC--CC----ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc
Confidence 344467899999998877652 11 12223445899999999999998765222222334 999999999974420
Q ss_pred -C---h--HHHHhcCCCCeeeCC
Q 020727 229 -D---D--KFMKGNFPNLKVLGP 245 (322)
Q Consensus 229 -~---~--~~l~~~~~~Lk~L~~ 245 (322)
. . ..+...+|+|+.|+.
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCcchhHHHHHHHHCcccCeECC
Confidence 1 1 246789999999953
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.27 E-value=1.5e-05 Score=65.63 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=79.5
Q ss_pred CEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcC
Q 020727 108 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 187 (322)
Q Consensus 108 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~ 187 (322)
+.|++++++++.. .. .-.++|++|++++ +.++.-....+...+++|+.|.++.+.+... ...++ ..+
T Consensus 11 ~~l~~s~~~l~~i--p~--~~~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~-~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEI--PR--DIPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGI-------EPNAF-EGA 77 (192)
T ss_dssp TEEECTTSCCSSC--CS--CCCTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-------CTTTT-TTC
T ss_pred CEEEcCCCCcCcC--cc--CCCCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCc-------CHhHc-CCc
Confidence 6788888755421 11 1235899999998 5665432222345679999998877655311 11122 368
Q ss_pred CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
++|++|+|++|.++.... ..+.++++|++|+|++|...... ......+++|++|.+
T Consensus 78 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEe
Confidence 999999999998764321 22346899999999998644321 223456788888865
No 150
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.14 E-value=0.00012 Score=68.73 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.1
Q ss_pred cCCCCCEEEecCccc
Q 020727 186 TMPKLKRLEMAYHVI 200 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i 200 (322)
.+++|++|++++|.+
T Consensus 193 ~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 193 NLPFLTAIYADNNSL 207 (454)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcC
Confidence 455555555555544
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.00012 Score=65.48 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=52.9
Q ss_pred eeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCC--HH---HH--------------HHHHhc--------CCCccEE
Q 020727 83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMS--DS---IV--------------AQIAGR--------LSAVTFL 135 (322)
Q Consensus 83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~---~l--------------~~l~~~--------~~~L~~L 135 (322)
+++|.+++......+..+...+++|+.|+|+++.+. .. .+ ...... |++|+.|
T Consensus 27 l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l 106 (329)
T 3sb4_A 27 ITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKV 106 (329)
T ss_dssp CSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-
T ss_pred eeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEE
Confidence 789999886666677777666899999999988554 00 00 112235 8999999
Q ss_pred eccCCCCCCHHHHHHHHhcCCCcceeecccc
Q 020727 136 DLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 166 (322)
Q Consensus 136 ~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~ 166 (322)
+|.. .++.-+-.+ ...|++|+.|.+...
T Consensus 107 ~L~~--~i~~I~~~a-F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 107 ILSE--KIKNIEDAA-FKGCDNLKICQIRKK 134 (329)
T ss_dssp CBCT--TCCEECTTT-TTTCTTCCEEEBCCS
T ss_pred ECCc--cccchhHHH-hhcCcccceEEcCCC
Confidence 9986 333211111 257899999988644
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.94 E-value=0.00014 Score=58.64 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=57.7
Q ss_pred CCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhc
Q 020727 107 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 186 (322)
Q Consensus 107 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~ 186 (322)
.+.|+++++.++.. .. .-.++|++|+|++ +.++.-.... ...+++|+.|.++.+.+. +. .. .....
T Consensus 11 ~~~l~~s~n~l~~i--p~--~~~~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~--~l--~~----~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLASV--PT--GIPTTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQLT--VL--PA----GVFDK 76 (170)
T ss_dssp TTEEECTTSCCSSC--CS--CCCTTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSCCC--CC--CT----TTTTT
T ss_pred CCEEEeCCCCcCcc--Cc--cCCCCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCCcC--cc--Ch----hhccC
Confidence 45566666544321 00 1125667777766 4444321111 124566777766655432 11 00 11246
Q ss_pred CCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 187 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 187 ~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
+++|++|+|++|.++.-. ...+..+++|+.|+|+++...
T Consensus 77 l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence 889999999998865321 123457889999999988643
No 153
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.81 E-value=0.00051 Score=64.32 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=18.8
Q ss_pred CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020727 188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 224 (322)
Q Consensus 188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~ 224 (322)
++|++|++++|.++. +.. +..+++|+.|++++|.
T Consensus 173 ~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC
T ss_pred ccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCc
Confidence 366666666665443 111 3456666666666664
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.80 E-value=0.0002 Score=57.89 Aligned_cols=86 Identities=14% Similarity=0.030 Sum_probs=49.7
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020727 130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 209 (322)
Q Consensus 130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~ 209 (322)
++|+.|+|++ +.++.-.. .....+++|+.|.++.+.+. +. . ..+...+++|++|+|++|.++.-. ...+
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~--~i--~----~~~~~~l~~L~~L~L~~N~l~~l~-~~~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEP-GVFDHLVNLQQLYFNSNKLT--AI--P----TGVFDKLTQLTQLDLNDNHLKSIP-RGAF 101 (174)
T ss_dssp TTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCC--CC--C----TTTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred CCCcEEEeCC-CCccccCH-HHhcCCcCCCEEECCCCCCC--cc--C----hhHhCCcchhhEEECCCCccceeC-HHHh
Confidence 5666666666 44432111 11234566777766555432 11 0 012246889999999998876321 1234
Q ss_pred hcCCCCCEEeecCCCCc
Q 020727 210 SSCALLEFLDLRGCWDV 226 (322)
Q Consensus 210 ~~~~~L~~L~L~~c~~~ 226 (322)
..+++|++|+|++|...
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 56889999999988644
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.78 E-value=0.00017 Score=58.36 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=39.3
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|+|++|.++... ......+++|+.|+|++ +.++.-. ..+...+++|+.|.++.+.+. + +.. ...
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~~~l~~L~~L~L~~N~l~--~--l~~----~~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNS-NKLTAIP-TGVFDKLTQLTQLDLNDNHLK--S--IPR----GAF 101 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCC--C--CCT----TTT
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCC-CCCCccC-hhHhCCcchhhEEECCCCccc--e--eCH----HHh
Confidence 45666666666443211 11223456666666665 4444211 111234566666665544332 1 000 111
Q ss_pred hcCCCCCEEEecCccc
Q 020727 185 STMPKLKRLEMAYHVI 200 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i 200 (322)
..+++|++|+|++|.+
T Consensus 102 ~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCTTCSEEECCSSCB
T ss_pred ccccCCCEEEeCCCCc
Confidence 2456666666666654
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.63 E-value=0.00025 Score=57.09 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=45.6
Q ss_pred CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020727 105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 184 (322)
Q Consensus 105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~ 184 (322)
++|+.|+|++|.++... ......+++|++|+|++ +.++.-. ......+++|+.|.++.+.+.. . .. ...
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~-N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~--~--~~----~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDN-NQLTVLP-AGVFDKLTQLTQLSLNDNQLKS--I--PR----GAF 98 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCCC--C--CT----TTT
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCC-CCcCccC-hhhccCCCCCCEEECCCCccCE--e--CH----HHh
Confidence 56777777777554321 11223457777777776 4554211 1122455777777766554421 0 00 112
Q ss_pred hcCCCCCEEEecCcccC
Q 020727 185 STMPKLKRLEMAYHVIS 201 (322)
Q Consensus 185 ~~~p~L~~L~L~~~~i~ 201 (322)
..+++|++|+|++|.++
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 35677777777777653
No 157
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.30 E-value=2.4e-05 Score=70.72 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=20.8
Q ss_pred CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCC
Q 020727 81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEM 117 (322)
Q Consensus 81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i 117 (322)
..+++|+|++..-...-......+++|+.|+|++|.+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 3577787765431111111124577888888887754
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.15 E-value=0.00054 Score=61.43 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=25.9
Q ss_pred hCCCCCEEecCC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecccc
Q 020727 103 NAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 166 (322)
Q Consensus 103 ~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~ 166 (322)
.+++|+.|+|++ |.++...- .....+++|+.|+|++ +.++.-...+ ...+++|+.|.|+.+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSS
T ss_pred CCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCC-CccceeCHHH-hcCCcCCCEEeCCCC
Confidence 344566666654 44432100 1123345666666665 3443211111 123455555554444
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.88 E-value=0.00013 Score=65.80 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=6.9
Q ss_pred CCeeEEEecCC
Q 020727 81 GSLRKLCVSGL 91 (322)
Q Consensus 81 ~~l~~L~l~~~ 91 (322)
.+|+.|+|++.
T Consensus 54 ~~L~~L~Ls~N 64 (350)
T 4ay9_X 54 GDLEKIEISQN 64 (350)
T ss_dssp TTCCEEEEECC
T ss_pred CCCCEEECcCC
Confidence 45777777654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.66 E-value=0.0052 Score=54.87 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=37.1
Q ss_pred hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHH
Q 020727 127 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 206 (322)
Q Consensus 127 ~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~ 206 (322)
..+++|+.|+|++++.++.-.... ...+++|+.|.|+.+.+. +. .......+++|++|+|++|.++.-. .
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~--~~------~~~~~~~l~~L~~L~l~~N~l~~~~-~ 97 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLR--FV------APDAFHFTPRLSRLNLSFNALESLS-W 97 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSCCC--EE------CTTGGGSCSCCCEEECCSSCCSCCC-S
T ss_pred CCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCccc--ee------CHHHhcCCcCCCEEeCCCCccceeC-H
Confidence 344556666665434443211111 123556666655544331 10 0001124566666666666543210 1
Q ss_pred HHHhcCCCCCEEeecCCC
Q 020727 207 KILSSCALLEFLDLRGCW 224 (322)
Q Consensus 207 ~i~~~~~~L~~L~L~~c~ 224 (322)
.++..++ |+.|+|.++.
T Consensus 98 ~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp TTTCSCC-CCEEECCSSC
T ss_pred HHcccCC-ceEEEeeCCC
Confidence 1112222 6666666553
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.65 E-value=0.011 Score=54.18 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=24.7
Q ss_pred hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecc
Q 020727 103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 164 (322)
Q Consensus 103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~ 164 (322)
.|++|+.+.|+.+.++.-.-.++ .+.+|+.+.|.. .++.-+-. ....|++|+.+.+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~-aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTF--VYAGIEEVLLPV--TLKEIGSQ-AFLKTSQLKTIEIP 234 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTT--TTCCCSEEECCT--TCCEECTT-TTTTCTTCCCEECC
T ss_pred CcccCCeeecCCCcceEechhhE--eecccCEEEeCC--chheehhh-HhhCCCCCCEEecC
Confidence 46666666666543322111111 135566666543 12111111 11356666666653
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=90.38 E-value=0.043 Score=50.28 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=72.2
Q ss_pred cCCCeeEEEecCCC----ChHHHHHHHHhCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 020727 79 SSGSLRKLCVSGLH----NDMMFSLIAENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG 152 (322)
Q Consensus 79 ~~~~l~~L~l~~~~----~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~ 152 (322)
.|..|+.+.+.... ....+ .+.+|+.+.|+.+ .|... ....|++|+.+.+.. .++.-+-.++.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~--~l~~I~~~aF~ 246 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE--NVSTIGQEAFR 246 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT--TCCEECTTTTT
T ss_pred CcccCCeeecCCCcceEechhhE-----eecccCEEEeCCchheehhh----HhhCCCCCCEEecCC--CccCccccccc
Confidence 35667888775421 12222 2578888888865 33332 224578888888864 22221112222
Q ss_pred hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH----HHHHHhcCCCCCEEeecCCCCcCC
Q 020727 153 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI----VLKILSSCALLEFLDLRGCWDVKL 228 (322)
Q Consensus 153 ~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~----l~~i~~~~~~L~~L~L~~c~~~~~ 228 (322)
. .+|+.+.+......+ +..++ ..|++|+.+.+.++.+.... -...+.+|++|+.+.|... ++.
T Consensus 247 ~--~~L~~i~lp~~i~~I--------~~~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~ 313 (401)
T 4fdw_A 247 E--SGITTVKLPNGVTNI--------ASRAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRI 313 (401)
T ss_dssp T--CCCSEEEEETTCCEE--------CTTTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCE
T ss_pred c--CCccEEEeCCCccEE--------ChhHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEE
Confidence 2 467777663221111 11122 25777777777665432000 0112346777777777642 321
Q ss_pred ChHHHHhcCCCCeeeCC
Q 020727 229 DDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 229 ~~~~l~~~~~~Lk~L~~ 245 (322)
-+...+..|++|+.+.+
T Consensus 314 I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp ECTTTTTTCCSCCEEEE
T ss_pred EhhhhhcCCCCccEEEE
Confidence 22334456777776643
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.88 E-value=0.26 Score=44.61 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=18.7
Q ss_pred hCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccC
Q 020727 103 NAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSY 139 (322)
Q Consensus 103 ~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 139 (322)
.+.+|+.+.++.. .+... ....|++|+.+.+..
T Consensus 228 ~~~~l~~i~ip~~~~~i~~~----~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTELGKS----VFYGCTDLESISIQN 262 (394)
T ss_dssp TTCCCCEEEECTTCCEECSS----TTTTCSSCCEEEECC
T ss_pred ccCCCceEEECCCceecccc----cccccccceeEEcCC
Confidence 3567788877664 22221 223467777777654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.78 E-value=0.89 Score=41.01 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=28.6
Q ss_pred cCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.|++|+.+.|..+ .|.+.+ +.+|.+|+.+.|... ++.-+......|++|+.+..
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence 5666777766543 133222 346677777776432 22223344466777776643
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.34 E-value=1.3 Score=39.81 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=29.4
Q ss_pred cCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.|++|+.+.+... .|.+. .+.+|.+|+.+.|... ++.-+......|.+|+.+.+
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccCCCcccccCce----eecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEE
Confidence 5677777777543 13322 2346777777777542 22122334467777777653
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.03 E-value=0.58 Score=42.28 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=68.2
Q ss_pred HhCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchH
Q 020727 102 ENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179 (322)
Q Consensus 102 ~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~ 179 (322)
..|.+|+.+.++.+ .+... ....|+.|+.+.+.. ..+... ....|++|+.+.+......+ +
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~-~~i~~~----~F~~~~~L~~i~l~~~i~~I--------~ 312 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGS-VIVPEK----TFYGCSSLTEVKLLDSVKFI--------G 312 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECS-SEECTT----TTTTCTTCCEEEECTTCCEE--------C
T ss_pred cccccceeEEcCCCcceeecc----ccccccccceeccCc-eeeccc----ccccccccccccccccccee--------c
Confidence 45888999999876 22221 223567777777765 333332 23467788888763221111 1
Q ss_pred HHHHHhcCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 180 ANAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 180 ~~~l~~~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
..++ ..|++|+.+.|... .|...+ +.+|.+|+.+.+..+ ++.-+......|++|+.+.+
T Consensus 313 ~~aF-~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 313 EEAF-ESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTT-TTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred hhhh-cCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence 1122 36788888888653 133222 347888888888653 32123344578888888754
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.15 E-value=0.6 Score=41.81 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=34.0
Q ss_pred cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020727 186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 245 (322)
Q Consensus 186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~ 245 (322)
.|++|+.+.+..+.++.-+- ..+.+|.+|+.+.|... ++.-+......|++|+.+.+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccceehh-hhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 67888888887654332111 12347888888888542 32123334567888887754
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.70 E-value=0.45 Score=42.63 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=61.5
Q ss_pred hCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHH
Q 020727 103 NAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180 (322)
Q Consensus 103 ~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~ 180 (322)
.|.+|+.+.++.+ .+... ....|.+|+.+.+.. .+..-+- .....|++|+.+.+....+. .-+.
T Consensus 238 ~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~~L~~i~l~~~~i~-------~I~~ 303 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYA--KVKTVPY-LLCSGCSNLTKVVMDNSAIE-------TLEP 303 (379)
T ss_dssp TCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECC--CCSEECT-TTTTTCTTCCEEEECCTTCC-------EECT
T ss_pred CCccceEEEcCCCccEeCcc----ccceeehhccccccc--cceeccc-cccccccccccccccccccc-------eehh
Confidence 3556666666554 22221 223456677777653 2221111 12246788888876432221 1111
Q ss_pred HHHHhcCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020727 181 NAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 241 (322)
Q Consensus 181 ~~l~~~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk 241 (322)
.++ ..|++|+.+.|..+ .|...+ +.+|.+|+.+.+... ++.-+.....+|+.++
T Consensus 304 ~aF-~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~~--v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 304 RVF-MDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPKS--ITLIESGAFEGSSITK 359 (379)
T ss_dssp TTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCTT--CCEECTTTTTTSSCCC
T ss_pred hhh-cCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECCc--cCEEchhHhhCCCCCc
Confidence 222 37899999999754 243332 358999999988543 3212223345665443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.80 E-value=1.7 Score=32.68 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=25.6
Q ss_pred CCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020727 189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226 (322)
Q Consensus 189 ~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~ 226 (322)
+|++|+|++|.|+.-. ...+..+++|+.|+|.+++-.
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence 6888888888765322 123456788888888887544
Done!