Query 020728
Match_columns 322
No_of_seqs 158 out of 755
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 5.3E-43 1.2E-47 309.0 15.0 146 13-160 2-156 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 3.7E-37 8.1E-42 262.4 13.0 141 16-160 2-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 9.5E-26 2.1E-30 183.9 10.7 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 2.9E-23 6.4E-28 162.5 4.6 72 89-160 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 3.5E-17 7.6E-22 122.9 5.5 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.5 3E-14 6.6E-19 116.9 7.1 98 13-116 14-112 (112)
7 PF00651 BTB: BTB/POZ domain; 98.0 3.7E-05 8.1E-10 61.0 8.6 99 15-129 10-109 (111)
8 PHA02713 hypothetical protein; 97.8 0.0001 2.2E-09 76.5 9.7 107 15-141 25-133 (557)
9 smart00225 BTB Broad-Complex, 97.4 0.00046 1E-08 51.2 5.9 85 22-124 5-90 (90)
10 PHA03098 kelch-like protein; P 97.1 0.0025 5.5E-08 64.7 10.0 98 16-135 10-109 (534)
11 PHA02790 Kelch-like protein; P 97.0 0.0013 2.7E-08 67.0 6.7 98 17-132 22-121 (480)
12 KOG4441 Proteins containing BT 96.5 0.0072 1.6E-07 63.3 7.4 95 17-130 38-133 (571)
13 KOG2716 Polymerase delta-inter 90.3 1.4 3E-05 41.8 8.1 103 15-134 4-108 (230)
14 KOG3433 Protein involved in me 87.5 0.58 1.3E-05 43.1 3.4 31 115-150 170-200 (203)
15 COG5124 Protein predicted to b 85.6 0.6 1.3E-05 42.9 2.4 31 115-150 174-204 (209)
16 KOG2422 Uncharacterized conser 78.7 1 2.2E-05 47.9 1.4 35 287-321 150-192 (665)
17 KOG4682 Uncharacterized conser 73.4 5.8 0.00013 40.8 5.1 111 24-155 77-191 (488)
18 KOG0783 Uncharacterized conser 72.3 5.2 0.00011 44.6 4.7 116 10-141 707-825 (1267)
19 KOG4350 Uncharacterized conser 64.3 33 0.00072 35.7 8.2 148 16-174 45-215 (620)
20 PF02214 BTB_2: BTB/POZ domain 63.6 3.8 8.2E-05 32.2 1.2 83 24-123 6-94 (94)
21 PF03962 Mnd1: Mnd1 family; I 57.0 9.4 0.0002 34.8 2.8 42 104-150 144-187 (188)
22 KOG2002 TPR-containing nuclear 55.2 15 0.00033 41.3 4.4 7 203-209 882-888 (1018)
23 PF07928 Vps54: Vps54-like pro 49.7 5.5 0.00012 34.6 0.0 120 24-183 1-125 (135)
24 PF11822 DUF3342: Domain of un 49.4 27 0.00059 34.7 4.7 89 26-130 14-103 (317)
25 PRK05365 malonic semialdehyde 32.7 25 0.00054 31.3 1.5 34 106-149 130-163 (195)
26 COG4957 Predicted transcriptio 32.1 59 0.0013 28.9 3.6 36 133-186 98-133 (148)
27 KOG2422 Uncharacterized conser 29.0 26 0.00056 37.7 1.1 18 142-159 24-41 (665)
28 cd02148 Nitroreductase_5 Nitro 28.8 30 0.00064 30.5 1.3 33 107-149 124-156 (185)
29 PF06375 BLVR: Bovine leukaemi 27.7 20 0.00044 32.1 0.0 6 150-155 2-7 (154)
30 PF03131 bZIP_Maf: bZIP Maf tr 24.5 99 0.0021 24.8 3.5 41 130-178 5-45 (92)
31 PF11978 MVP_shoulder: Shoulde 24.0 56 0.0012 28.2 2.0 42 107-148 36-90 (118)
32 KOG1665 AFH1-interacting prote 24.0 83 0.0018 30.5 3.3 91 15-123 8-103 (302)
33 KOG0511 Ankyrin repeat protein 23.4 2.1E+02 0.0046 29.8 6.2 106 23-132 298-431 (516)
34 PF09278 MerR-DNA-bind: MerR, 23.0 1E+02 0.0022 22.3 3.1 38 133-184 14-51 (65)
35 PF08266 Cadherin_2: Cadherin- 22.3 31 0.00066 27.6 0.1 15 304-318 58-72 (84)
36 PRK11053 dihydropteridine redu 22.0 60 0.0013 29.3 2.0 34 104-147 147-180 (217)
37 PRK12540 RNA polymerase sigma 20.5 2.8E+02 0.006 24.3 5.9 18 130-147 124-141 (182)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-43 Score=309.03 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=134.0
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--------
Q 020728 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (322)
Q Consensus 13 ~~~~~IkL~SsDG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~-------- 84 (322)
|++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 667899999999999999999999999999999999986432 599999 7999999999999999998642
Q ss_pred -CccccchhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 020728 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (322)
Q Consensus 85 -s~~ei~eWD~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEE~Ei~k~ 160 (322)
....+++||++||++|..+||+||.|||||+|++|+++||++||+||+||||+|||.+|||++|+|+||+.+++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e 156 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE 156 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999888777664
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=262.38 Aligned_cols=141 Identities=34% Similarity=0.514 Sum_probs=128.7
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC---C------c
Q 020728 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---S------N 86 (322)
Q Consensus 16 ~~IkL~SsDG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~---s------~ 86 (322)
+.|.|.|.||++|.|+..+|..|-+|++|+.+.+- .+.|||+| +|.|.+|.+|++||+||..... . .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 57999999999999999999999999998866542 47889999 8999999999999999997431 1 1
Q ss_pred cccchhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 020728 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (322)
Q Consensus 87 ~ei~eWD~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEE~Ei~k~ 160 (322)
.....||..|+.+|+++|++++.|||||+|++|+++||+.||.||+||||+|||++|||++||||||++.++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 24567999999999999999999999999999999999999999999999999999999999999999999886
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.93 E-value=9.5e-26 Score=183.92 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=89.1
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCc---cccchh
Q 020728 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (322)
Q Consensus 16 ~~IkL~SsDG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~---~ei~eW 92 (322)
++|+|+|+||++|.|+.++|++|++|++|+.+.|.+.+...+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998777654333689999 899999999999999999875432 358999
Q ss_pred hhhhccCChHHHHHHHhhcccCCC
Q 020728 93 DEKFIRMDTKRLCELTSAADSLQL 116 (322)
Q Consensus 93 D~eFL~iD~~~LfeLI~AAnyLdI 116 (322)
|.+|++++++.||+|+.||+||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.88 E-value=2.9e-23 Score=162.47 Aligned_cols=72 Identities=40% Similarity=0.658 Sum_probs=62.1
Q ss_pred cchhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 020728 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (322)
Q Consensus 89 i~eWD~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEE~Ei~k~ 160 (322)
+++||++|++++.+.||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999987764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.68 E-value=3.5e-17 Score=122.85 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.6
Q ss_pred cEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcc
Q 020728 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (322)
Q Consensus 17 ~IkL~SsDG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk 80 (322)
+|+|+|+||+.|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999998866543 2289999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.51 E-value=3e-14 Score=116.88 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=84.3
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCC-CCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccch
Q 020728 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGS-SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (322)
Q Consensus 13 ~~~~~IkL~SsDG~~F~Vs~eaA~qS~tIr~mL~d~g~~~-~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~e 91 (322)
|.+.+|+|+|+||.+|.|.+++|+.|+||+.|+...|..+ ...+.+.++ +|++.+|+||++|+.+...+..+..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 4467999999999999999999999999999987665433 245679999 79999999999999997766555568898
Q ss_pred hhhhhccCChHHHHHHHhhcccCCC
Q 020728 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (322)
Q Consensus 92 WD~eFL~iD~~~LfeLI~AAnyLdI 116 (322)
| .+.+++.++|+.|||||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 8 5889999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.00 E-value=3.7e-05 Score=61.02 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=75.5
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhh
Q 020728 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (322)
Q Consensus 15 ~~~IkL~SsDG~~F~Vs~eaA~-qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD 93 (322)
...++|+..||..|.|.+.++. .|+.+++++...+........|+++ ++++..+..+++||...... ++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC---
Confidence 4678999999999999999985 6999999887663222222468888 89999999999999543211 11
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 020728 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (322)
Q Consensus 94 ~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~ 129 (322)
..+.+.+|+.+|++|+|+.|...|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 246699999999999999999999998753
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.79 E-value=0.0001 Score=76.46 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=85.0
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchh
Q 020728 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (322)
Q Consensus 15 ~~~IkL~SsDG~~F~Vs~eaA~-qS~tIr~mL~d~g~~~~-~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eW 92 (322)
-..|+|...+|+.|.+.+.++. .|+.++.|+.. ++.+. ....|.|. .|++.+|+.||+|+....
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 4578998888999999999887 79999998753 33221 24568897 799999999999987632
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 020728 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (322)
Q Consensus 93 D~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe 141 (322)
++.+.+.+|+.||++|+|+.|.+.||..+...+.-.+-=+|+.
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~ 133 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH 133 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence 2346699999999999999999999999988777665555543
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.39 E-value=0.00046 Score=51.16 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=65.5
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhhhhhccCC
Q 020728 22 TADGSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (322)
Q Consensus 22 SsDG~~F~Vs~eaA~q-S~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD~eFL~iD 100 (322)
..+|..|.|.+.++.. |+.++.|+..... ......|.++ ++++.++..|++||..-.. .++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~-~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~----------------~~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK-ESKKSEIYLD-DVSPEDFRALLEFLYTGKL----------------DLP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCc-cCCCCEEEec-CCCHHHHHHHHHeecCcee----------------ecC
Confidence 5577999999988874 7899988754322 1135678898 7999999999999986432 123
Q ss_pred hHHHHHHHhhcccCCCchHHHHHH
Q 020728 101 TKRLCELTSAADSLQLKPLVDLTS 124 (322)
Q Consensus 101 ~~~LfeLI~AAnyLdI~~LldL~c 124 (322)
...+.+|+.+|++++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 346889999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.13 E-value=0.0025 Score=64.65 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=76.8
Q ss_pred ccEEEEe-CCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhh
Q 020728 16 SYIWLQT-ADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (322)
Q Consensus 16 ~~IkL~S-sDG~~F~Vs~eaA~-qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD 93 (322)
..|+|.- .+|+.|.+.+.++. .|+.++.|+... +. ...|.|+ . +..+|+.|++|+..-.-
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~~------------ 71 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGKI------------ 71 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCce------------
Confidence 4566664 68999999999987 589999987533 22 4568897 5 99999999999876431
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 020728 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKT 135 (322)
Q Consensus 94 ~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKT 135 (322)
.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 72 ----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 72 ----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred ----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 24556799999999999999999999999877665444
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=97.04 E-value=0.0013 Score=66.95 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=69.6
Q ss_pred cEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhccCCCCCccccchhhh
Q 020728 17 YIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (322)
Q Consensus 17 ~IkL~SsDG~~F~Vs~eaA-~qS~tIr~mL~d~g~~~~~~~~IpLP-~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD~ 94 (322)
.-.+...-|..|.+.+.++ ..|++++.|+.. ++.++. ..|.+. ..|+..+|+.||+|+..-+
T Consensus 22 ~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~-------------- 85 (480)
T PHA02790 22 FKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK-------------- 85 (480)
T ss_pred hceEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee--------------
Confidence 3344555688999999995 468999998754 343322 234431 2699999999999974322
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 020728 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (322)
Q Consensus 95 eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~Ik 132 (322)
+.++.+.+.+|+.||++|+|+.+++.||+.+...|.
T Consensus 86 --l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 86 --VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred --EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 234556688889999999999999999888765544
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.46 E-value=0.0072 Score=63.28 Aligned_cols=95 Identities=26% Similarity=0.324 Sum_probs=75.3
Q ss_pred cEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhhhh
Q 020728 17 YIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEK 95 (322)
Q Consensus 17 ~IkL~SsDG~~F~Vs~eaA~-qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD~e 95 (322)
.+.|.-.+ +.|.+.+.++. .|++++.|+.. +..+.....|.|. .|++.+|..+++|+.....
T Consensus 38 Dv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i-------------- 100 (571)
T KOG4441|consen 38 DVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL-------------- 100 (571)
T ss_pred eEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE--------------
Confidence 45555555 88999888876 68999998764 3334456779997 6999999999999876542
Q ss_pred hccCChHHHHHHHhhcccCCCchHHHHHHHHHHHH
Q 020728 96 FIRMDTKRLCELTSAADSLQLKPLVDLTSRALARI 130 (322)
Q Consensus 96 FL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~ 130 (322)
.++.+.+-+|+.||.+|+|..+++.||..+...
T Consensus 101 --~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 101 --EISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred --EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456778899999999999999999999887653
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=90.29 E-value=1.4 Score=41.79 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=76.0
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCC-CCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchh
Q 020728 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGM-GSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (322)
Q Consensus 15 ~~~IkL~SsDG~~F~Vs~eaA~-qS~tIr~mL~d~g~-~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eW 92 (322)
+..|+| --.|.+|.-+...+. +.+.++.|+..... ..+....|=| +-++.-+..|+.|++--... +|+
T Consensus 4 ~~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe- 73 (230)
T KOG2716|consen 4 SETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE- 73 (230)
T ss_pred cceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc-
Confidence 344554 346889999888886 56888887754421 2223345666 58999999999999853221 332
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 020728 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 134 (322)
Q Consensus 93 D~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGK 134 (322)
+...|-+|+.=|.|..+.+|+++|..+++..+.+.
T Consensus 74 -------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 -------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred -------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 45779999999999999999999999999998875
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.49 E-value=0.58 Score=43.11 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 020728 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (322)
Q Consensus 115 dI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (322)
+|--|.++||+.. |.-|.+||+.||||+||.
T Consensus 170 nI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 170 NIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred hHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 7888889998876 999999999999999984
No 15
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=85.62 E-value=0.6 Score=42.91 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=26.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 020728 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (322)
Q Consensus 115 dI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (322)
+|.-|.++.|+.. |.-|+|||+.||||+||.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 6777888888776 889999999999999874
No 16
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.75 E-value=1 Score=47.89 Aligned_cols=35 Identities=37% Similarity=0.390 Sum_probs=17.8
Q ss_pred cccccCCCCCCC---cCCHHHHHhh-----hhcccCCcccccc
Q 020728 287 RKVDFDDVDIDD---EIDPALKEKL-----DRGRLCPQTEFRL 321 (322)
Q Consensus 287 ~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~ 321 (322)
|.|.+.|.+.++ +|+-.+-.+. |---.+|.|||++
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~~~~lnpdtE~k~ 192 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVDFKKLNPDTEFKL 192 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHhhhccCCCchhhh
Confidence 346666655544 2333332222 3334778888854
No 17
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.45 E-value=5.8 Score=40.80 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=74.4
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCc----ccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhhhhhccC
Q 020728 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNY----AISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRM 99 (322)
Q Consensus 24 DG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~----~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD~eFL~i 99 (322)
=|.+.++..--+.||+.+..|....-..+ ... .|+=| +|+...|.-++-=+.+.- +.+
T Consensus 77 lg~eWrlHk~yL~QS~yf~smf~Gtw~es-~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------veI 138 (488)
T KOG4682|consen 77 LGFEWRLHKPYLFQSEYFKSMFSGTWKES-SMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VEI 138 (488)
T ss_pred ccceeeeeeeeeeccHHHHHHhccccChh-hCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------eec
Confidence 36777777777888888888765332211 122 35555 688777776665433211 247
Q ss_pred ChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhh
Q 020728 100 DTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKL 155 (322)
Q Consensus 100 D~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EEE~ 155 (322)
+.+.+..++.||.+|..++|++-|...+-. .-+|+-+..++...+-+-.|.-.
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie---~lspkta~~yYea~ckYgle~vk 191 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIE---TLSPKTACGYYEAACKYGLESVK 191 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---hcChhhhhHhhhhhhhhhhHHHH
Confidence 888999999999999999999999877644 44556666677666666554433
No 18
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=72.30 E-value=5.2 Score=44.58 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCCCCCccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccc
Q 020728 10 KPEMMKSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKE 88 (322)
Q Consensus 10 ~pe~~~~~IkL~SsDG~~F~Vs~eaA~-qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~e 88 (322)
+||.+-..|+++ ||++|....-++. .+.++.-|+.-..+..+.-.+--.| ++.+.|+-|+.|+.---
T Consensus 707 h~e~~d~~i~~K--DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d-------- 774 (1267)
T KOG0783|consen 707 HEETMDTVIKLK--DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDD-------- 774 (1267)
T ss_pred CccceeEEEEec--CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccc--------
Confidence 356544445554 9998876554442 2445555544443322111122233 77999999999975321
Q ss_pred cchhhhhhcc--CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 020728 89 RKSFDEKFIR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (322)
Q Consensus 89 i~eWD~eFL~--iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe 141 (322)
...|++ -..+-+|+++..|+-|=|..|-++|-..+-+.+.=|+..++-+
T Consensus 775 ----~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 775 ----KVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred ----hHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 122333 2445699999999999999999999999998888887665544
No 19
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.25 E-value=33 Score=35.71 Aligned_cols=148 Identities=15% Similarity=0.199 Sum_probs=97.2
Q ss_pred ccEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCC--CC-------
Q 020728 16 SYIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPG--SS------- 85 (322)
Q Consensus 16 ~~IkL~SsDG~~F~Vs~eaA-~qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~--~s------- 85 (322)
..|+++-.| ..|...+-++ ..|..++.+|- .|+.++....|||. .-++..++.++.|+..-+-.- -.
T Consensus 45 ~DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~ 121 (620)
T KOG4350|consen 45 SDVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDY 121 (620)
T ss_pred cceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHH
Confidence 356666666 6677666554 46899988654 55555556789996 677999999999987655321 00
Q ss_pred ------------ccccchhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHh
Q 020728 86 ------------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 153 (322)
Q Consensus 86 ------------~~ei~eWD~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T~EE 153 (322)
...++++-.+.+ ..+.+|-++.||.+.+++.|.++||..+ .+...++-.--+.. -++.+-
T Consensus 122 LslAh~Ygf~~Le~aiSeYl~~iL--~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sFn-~LSk~s 193 (620)
T KOG4350|consen 122 LSLAHRYGFIQLETAISEYLKEIL--KNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSFN-RLSKDS 193 (620)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHH--cccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcchh-hhhHHH
Confidence 112344444443 4566888999999999999999999655 77777775422221 244444
Q ss_pred hhccc-ccCCCChhHHHHHHHH
Q 020728 154 KLEPL-KNTTDDPRIRLLNRLY 174 (322)
Q Consensus 154 E~Ei~-k~~~~dp~~~~ln~~~ 174 (322)
.++++ +.-|+.|-...++-+.
T Consensus 194 L~e~l~RDsFfApE~~IFlAv~ 215 (620)
T KOG4350|consen 194 LKELLARDSFFAPELKIFLAVR 215 (620)
T ss_pred HHHHHhhhcccchHHHHHHHHH
Confidence 44444 3367888888776553
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=63.59 E-value=3.8 Score=32.19 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCCEEEecHHHHHHc--HHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-cCCCCCccccchhhhhhcc
Q 020728 24 DGSIQQVEQEVAMFC--PLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 98 (322)
Q Consensus 24 DG~~F~Vs~eaA~qS--~tIr~mL~d~--g~~~~~~~~IpLP~nVss~iLkkIIEyCe~H-k~~~~s~~ei~eWD~eFL~ 98 (322)
.|+.|.++.+.+..- ..+..++... .........+=| +-++..++.|+.|++.. .-+.
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 589999999998732 3555555432 111113445555 58999999999999994 2111
Q ss_pred CChHHHHHHHhhcccCCCchH-HHHH
Q 020728 99 MDTKRLCELTSAADSLQLKPL-VDLT 123 (322)
Q Consensus 99 iD~~~LfeLI~AAnyLdI~~L-ldL~ 123 (322)
.+...+-.|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 123457788999999999998 5543
No 21
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.03 E-value=9.4 Score=34.81 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=31.2
Q ss_pred HHHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 020728 104 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (322)
Q Consensus 104 LfeLI~AAnyL--dI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~T 150 (322)
+..+..|||.. +|..|..+|++.. |.+.++||+.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k~-----~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKKF-----GMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc-----CCCHHHHHHHcCCccccC
Confidence 34445566654 6777777777653 999999999999999883
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=55.15 E-value=15 Score=41.30 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHhhh
Q 020728 203 DDLLQFI 209 (322)
Q Consensus 203 d~ll~fi 209 (322)
++.+.|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 23
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=49.72 E-value=5.5 Score=34.59 Aligned_cols=120 Identities=21% Similarity=0.324 Sum_probs=12.8
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhhhhhccCChHH
Q 020728 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (322)
Q Consensus 24 DG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD~eFL~iD~~~ 103 (322)
||+.|.|...++..-+.|.+.+. ....+| .+.++++.++++|.+.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~---------~~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQ---------LASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHH---------HHHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 67778887777766666655432 123466 57778888888776543 345
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCC-----CHHHHHhHcCCCCCCChHhhhcccccCCCChhHHHHHHHHHHHH
Q 020728 104 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (322)
Q Consensus 104 LfeLI~AAnyLdI~~LldL~ck~VA~~IkGK-----TpEEIRe~FgI~~D~T~EEE~Ei~k~~~~dp~~~~ln~~~~~~~ 178 (322)
.++|+..|-....-+|-.++.+.+|-..+.- -.--||.+|.-. .++- ..-++. .|+.+.+.|..-+
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~~-~~~~~~------~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPSK-QQSLLR------EFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-cchHHH------HHHHHHHHHHHHH
Confidence 7888888888888888888777766543321 233455555433 1111 111111 4666777777766
Q ss_pred HHHHH
Q 020728 179 KELKE 183 (322)
Q Consensus 179 ~e~~~ 183 (322)
.|+-.
T Consensus 121 ~eI~~ 125 (135)
T PF07928_consen 121 NEIFS 125 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=49.40 E-value=27 Score=34.73 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=59.7
Q ss_pred CEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccccchhhhhhccCChHHH
Q 020728 26 SIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRL 104 (322)
Q Consensus 26 ~~F~Vs~eaA~q-S~tIr~mL~d~g~~~~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei~eWD~eFL~iD~~~L 104 (322)
+.|..+...+.. .++++..+...-.+.....+|+|-+.=+-.|++=+++|++... + .++.+..
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---------p-------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---------P-------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---------C-------cCCcCcE
Confidence 568888888764 6888877643100111244566643456677777777776611 1 2456678
Q ss_pred HHHHhhcccCCCchHHHHHHHHHHHH
Q 020728 105 CELTSAADSLQLKPLVDLTSRALARI 130 (322)
Q Consensus 105 feLI~AAnyLdI~~LldL~ck~VA~~ 130 (322)
..|+.-|+||+|++|++.|-.++...
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHh
Confidence 88999999999999999999888543
No 25
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=32.70 E-value=25 Score=31.25 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCC
Q 020728 106 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (322)
Q Consensus 106 eLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~ 149 (322)
.|+.||..|++.. .++.|-..+.+++.|||++++
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~ 163 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTW 163 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCe
Confidence 3888888888876 245577889999999998655
No 26
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=32.13 E-value=59 Score=28.89 Aligned_cols=36 Identities=33% Similarity=0.494 Sum_probs=28.2
Q ss_pred CCCHHHHHhHcCCCCCCChHhhhcccccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 020728 133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREK 186 (322)
Q Consensus 133 GKTpEEIRe~FgI~~D~T~EEE~Ei~k~~~~dp~~~~ln~~~~~~~~e~~~~~~ 186 (322)
|.||+|-|+.||++.|+.. .---||..|.+|-+.-.
T Consensus 98 gmTPd~YR~KW~LP~dYPM------------------vAPnYAa~RS~LAK~mG 133 (148)
T COG4957 98 GLTPDEYRAKWGLPPDYPM------------------VAPNYAAARSQLAKAMG 133 (148)
T ss_pred CCCHHHHHHhcCCCCCCCc------------------cchHHHHHHHHHHHHhC
Confidence 8999999999999998832 22348999999866543
No 27
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.01 E-value=26 Score=37.71 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=7.6
Q ss_pred HcCCCCCCChHhhhcccc
Q 020728 142 IFHLPDDLTEEEKLEPLK 159 (322)
Q Consensus 142 ~FgI~~D~T~EEE~Ei~k 159 (322)
.+...+|-..||.-.-+.
T Consensus 24 ~~d~esded~e~s~~k~e 41 (665)
T KOG2422|consen 24 ANDMESDEDTEESGQKRE 41 (665)
T ss_pred hccccccccchhcccccc
Confidence 444444444444433333
No 28
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=28.85 E-value=30 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCC
Q 020728 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (322)
Q Consensus 107 LI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~D~ 149 (322)
|+.||..|++.. .+|.|-..+++++.|||++++
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~ 156 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRW 156 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCe
Confidence 888888888875 345677889999999998765
No 29
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=27.66 E-value=20 Score=32.11 Aligned_cols=6 Identities=50% Similarity=0.329 Sum_probs=0.0
Q ss_pred ChHhhh
Q 020728 150 TEEEKL 155 (322)
Q Consensus 150 T~EEE~ 155 (322)
|+||.+
T Consensus 2 ~eEEl~ 7 (154)
T PF06375_consen 2 DEEELE 7 (154)
T ss_dssp ------
T ss_pred CHHHHH
Confidence 344443
No 30
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=24.53 E-value=99 Score=24.76 Aligned_cols=41 Identities=32% Similarity=0.356 Sum_probs=28.9
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhcccccCCCChhHHHHHHHHHHHH
Q 020728 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (322)
Q Consensus 130 ~IkGKTpEEIRe~FgI~~D~T~EEE~Ei~k~~~~dp~~~~ln~~~~~~~ 178 (322)
.|...+++|+..++ ..+|+++...+..- +=++=||.||...
T Consensus 5 eL~~m~v~efn~~L---~~lt~~q~~~lK~~-----RRr~KNR~~A~~c 45 (92)
T PF03131_consen 5 ELVSMSVREFNRLL---RGLTEEQIAELKQR-----RRRLKNRGYAQNC 45 (92)
T ss_dssp HHHHS-HHHHHHHC---TTS-HHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHH---HcCCHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45567889998888 78998887766542 4458899999853
No 31
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=23.98 E-value=56 Score=28.20 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=31.4
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCC------------CHHHHHh-HcCCCCC
Q 020728 107 LTSAADSLQLKPLVDLTSRALARIIEGK------------TPEEIRE-IFHLPDD 148 (322)
Q Consensus 107 LI~AAnyLdI~~LldL~ck~VA~~IkGK------------TpEEIRe-~FgI~~D 148 (322)
.-.|+....++..+-.+|++||.+|+|. |+.-||. .||....
T Consensus 36 ~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 36 PEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp HHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred hhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 3478888999999999999999999974 2455655 7887653
No 32
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=23.98 E-value=83 Score=30.50 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=59.5
Q ss_pred CccEEEEeCCCCEEEecHH--HHHH-cHHHHHHHhhcCCCC--CCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccc
Q 020728 15 KSYIWLQTADGSIQQVEQE--VAMF-CPLICQEVIQKGMGS--SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKER 89 (322)
Q Consensus 15 ~~~IkL~SsDG~~F~Vs~e--aA~q-S~tIr~mL~d~g~~~--~~~~~IpLP~nVss~iLkkIIEyCe~Hk~~~~s~~ei 89 (322)
+++|+|- -.|+.|.-..+ +.+. -..+..|+.+.|.+. +....+-| +-++.-++-|+.|+++-+-+
T Consensus 8 ~~~vrln-igGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~------- 77 (302)
T KOG1665|consen 8 SSMVRLN-IGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIP------- 77 (302)
T ss_pred hhhheee-cCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCcee-------
Confidence 4455554 35666654333 3332 245667777776432 23345556 58899999999999886533
Q ss_pred chhhhhhccCChHHHHHHHhhcccCCCchHHHHH
Q 020728 90 KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLT 123 (322)
Q Consensus 90 ~eWD~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ 123 (322)
....-.+.+++.+|.|++|-+|.+-.
T Consensus 78 --------~~s~i~~lgvLeeArff~i~sL~~hl 103 (302)
T KOG1665|consen 78 --------SLSDIDCLGVLEEARFFQILSLKDHL 103 (302)
T ss_pred --------ecCCccHHHHHHHhhHHhhHhHHhHH
Confidence 12334589999999999999998743
No 33
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.35 E-value=2.1e+02 Score=29.77 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=72.7
Q ss_pred CCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcc---cccCCCCCHHHHHHHHHHHHhccCCCC----C----------
Q 020728 23 ADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYA---ISLPQRVNPAMLSLILDYCRFHQVPGS----S---------- 85 (322)
Q Consensus 23 sDG~~F~Vs~eaA~qS~tIr~mL~d~g~~~~~~~~---IpLP~nVss~iLkkIIEyCe~Hk~~~~----s---------- 85 (322)
-......+...++..+.+...|+...-..++.+.. ..|| +..+.+.+.++.|+-.|+.+.+ +
T Consensus 298 ~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 298 PEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred cccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhh
Confidence 33344778888888888999887655443222443 4578 7889999999999988887521 0
Q ss_pred -----------ccccchhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 020728 86 -----------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (322)
Q Consensus 86 -----------~~ei~eWD~eFL~iD~~~LfeLI~AAnyLdI~~LldL~ck~VA~~Ik 132 (322)
...+..| .+| +|.-.+++++.-|.-+....|-.++...+|+.+.
T Consensus 377 l~~dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1123445 223 3444578888888888888888888888887655
No 34
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.99 E-value=1e+02 Score=22.30 Aligned_cols=38 Identities=37% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCHHHHHhHcCCCCCCChHhhhcccccCCCChhHHHHHHHHHHHHHHHHHH
Q 020728 133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER 184 (322)
Q Consensus 133 GKTpEEIRe~FgI~~D~T~EEE~Ei~k~~~~dp~~~~ln~~~~~~~~e~~~~ 184 (322)
|-|-+|||+++.+.++- ++.......+.+.+++++.++
T Consensus 14 GfsL~eI~~~l~l~~~~--------------~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQG--------------DPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp T--HHHHHHHHHHCCSH--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCC--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999887541 223344456667777777665
No 35
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=22.31 E-value=31 Score=27.60 Aligned_cols=15 Identities=40% Similarity=0.851 Sum_probs=9.6
Q ss_pred HHHhhhhcccCCccc
Q 020728 304 LKEKLDRGRLCPQTE 318 (322)
Q Consensus 304 ~~~~~~~~~~~~~~~ 318 (322)
..++||||..||++.
T Consensus 58 v~~rIDRE~LC~~~~ 72 (84)
T PF08266_consen 58 VSERIDREELCGQSS 72 (84)
T ss_dssp ESS--SCCCC-TTSS
T ss_pred eCCccCHHHHCCCCC
Confidence 457999999999864
No 36
>PRK11053 dihydropteridine reductase; Provisional
Probab=21.98 E-value=60 Score=29.25 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=25.8
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCC
Q 020728 104 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPD 147 (322)
Q Consensus 104 LfeLI~AAnyLdI~~LldL~ck~VA~~IkGKTpEEIRe~FgI~~ 147 (322)
+-.|+.||..|++..- +|.|-.++.+++.|||++
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 4467777777777653 456778999999999984
No 37
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=20.46 E-value=2.8e+02 Score=24.29 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.2
Q ss_pred HHhCCCHHHHHhHcCCCC
Q 020728 130 IIEGKTPEEIREIFHLPD 147 (322)
Q Consensus 130 ~IkGKTpEEIRe~FgI~~ 147 (322)
.+.|.|.+||.+.+||+.
T Consensus 124 ~~~g~s~~EIA~~Lgis~ 141 (182)
T PRK12540 124 GASGFSYEDAAAICGCAV 141 (182)
T ss_pred HHcCCCHHHHHHHHCCCH
Confidence 567999999999999883
Done!