BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020729
         (322 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225461477|ref|XP_002282453.1| PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera]
 gi|302142996|emb|CBI20291.3| unnamed protein product [Vitis vinifera]
          Length = 321

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/322 (75%), Positives = 279/322 (86%), Gaps = 1/322 (0%)

Query: 1   MAAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQA 60
           MAA     P +LR+A+ +F LP  L H+N    ++   R F   T L  +ASG+ HL QA
Sbjct: 1   MAATGFTTPSVLRKALHSF-LPLRLTHINNTLFYYKNLRSFPLSTHLNSSASGMCHLAQA 59

Query: 61  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
           +KG+ + LLKGV D++ IE VKHILEMA+RAS+RREVLH+DFLTPPVLKESM+ LEKLAD
Sbjct: 60  MKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLAD 119

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
           +KAVAQGGYPQAERCRLSVGH E LT+ PDIVAAL ITGNFGFQ CSHGDFLG+ILGTGI
Sbjct: 120 MKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAILGTGI 179

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
           AREK+GDIILQGEKGAQ L+VPEL D+L++SLEKVGNVSVSCT++PLLALEYE PRT +F
Sbjct: 180 AREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTF 239

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
           KTIE SLRVDALASAGFKLSRSKLV+LISNGDVRVNWTTVTKNGTTL+TGD+VSVSGKGR
Sbjct: 240 KTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGR 299

Query: 301 IKIGEINSTRKGKFAVELIQYL 322
           +KIGEINST+KGK+AVELI++L
Sbjct: 300 LKIGEINSTKKGKYAVELIRFL 321


>gi|147798253|emb|CAN67613.1| hypothetical protein VITISV_010260 [Vitis vinifera]
          Length = 269

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/267 (83%), Positives = 250/267 (93%)

Query: 56  HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
           HL QA+KG+ + LLKGV D++ IE VKHILEMA+RAS+RREVLH+DFLTPPVLKESM+ L
Sbjct: 3   HLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVL 62

Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
           EKLAD+KAVAQGGYPQAERCRLSVGH E LT+ PDIVAAL ITGNFGFQ CSHGDFLG+I
Sbjct: 63  EKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAI 122

Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
           LGTGIAREK+GDIILQGEKGAQ L+VPEL D+L++SLEKVGNVSVSCT++PLLALEYE P
Sbjct: 123 LGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEYEEP 182

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           RT +FKTIE SLRVDALASAGFKLSRSKLV+LISNGDVRVNWTTVTKNGTTL+TGD+VSV
Sbjct: 183 RTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSV 242

Query: 296 SGKGRIKIGEINSTRKGKFAVELIQYL 322
           SGKGR+KIGEINST+KGK+AVELI++L
Sbjct: 243 SGKGRLKIGEINSTKKGKYAVELIRFL 269


>gi|449457021|ref|XP_004146247.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
 gi|449495519|ref|XP_004159865.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
          Length = 319

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/321 (72%), Positives = 276/321 (85%), Gaps = 7/321 (2%)

Query: 3   AISLAAPWILRRAVRTFSLPQPL-LHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61
           A S+AA W LRRA +  S  +PL L+LN   CF+       FP+S   T SGI  L+QAV
Sbjct: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNR-LCFNEAR----FPSSPLGT-SGICQLVQAV 58

Query: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121
           KG+ D LL GVGDK  I +VK IL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 59  KGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 118

Query: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
           KA+AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLGSILGTGIA
Sbjct: 119 KAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIA 178

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
           REK+GDI+LQ E GAQ ++VPEL D+LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FK
Sbjct: 179 REKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFK 238

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
           TIEASLRVDA+ASAGFK+SRSKLV+LIS+GDVRVNWT++TKNGT L+TGDIVSVSGKGR+
Sbjct: 239 TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRL 298

Query: 302 KIGEINSTRKGKFAVELIQYL 322
           KIGEINST+KGKFAVELI+Y+
Sbjct: 299 KIGEINSTKKGKFAVELIRYV 319


>gi|359807576|ref|NP_001241156.1| uncharacterized protein LOC100793767 [Glycine max]
 gi|255642537|gb|ACU21532.1| unknown [Glycine max]
          Length = 324

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/329 (68%), Positives = 269/329 (81%), Gaps = 14/329 (4%)

Query: 1   MAAISLAAPWILRRAVRTFSLPQP-------LLHLNPGSCFHGTHRPFTFPTSLRHTASG 53
           + A S    W LRRA + F++           L L    C H      +  TSL   ASG
Sbjct: 3   VTASSFGTTWCLRRAAQAFAISHSHILRNNVKLSLQRNFCSH----LLSVSTSL---ASG 55

Query: 54  IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM 113
           +   +QA+KG  D LLKGVG+++  +EVKHILEMARRAS +RE+LH+DFLTPPVLKESM 
Sbjct: 56  VSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQ 115

Query: 114 ALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLG 173
            LEKLADVKA+AQGGYPQAERCR+SVGHPE LTSDPDI++ALSITGNF F+PCSHGDFLG
Sbjct: 116 VLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLG 175

Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
           SILGTGI REK+GDIILQGE+GAQ +VVPEL ++L+++L KV NV VSCT+IPL++L+YE
Sbjct: 176 SILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYE 235

Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
           PPRTKSFKTIEASLRVDALASAGFK+SRSKLV++ISNGDVR+NW  VT  GTTL++GDIV
Sbjct: 236 PPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIV 295

Query: 294 SVSGKGRIKIGEINSTRKGKFAVELIQYL 322
           S+SGKGR+KIGEINST+KGKFAVELI+YL
Sbjct: 296 SISGKGRLKIGEINSTKKGKFAVELIRYL 324


>gi|18404337|ref|NP_564622.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
 gi|16648939|gb|AAL24321.1| Unknown protein [Arabidopsis thaliana]
 gi|24899783|gb|AAN65106.1| Unknown protein [Arabidopsis thaliana]
 gi|27311617|gb|AAO00774.1| Unknown protein [Arabidopsis thaliana]
 gi|30984534|gb|AAP42730.1| At1g53120 [Arabidopsis thaliana]
 gi|332194772|gb|AEE32893.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
          Length = 320

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/323 (69%), Positives = 271/323 (83%), Gaps = 4/323 (1%)

Query: 1   MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
           MA  SLA PW ILR A R+ +     LH N  +       P +FP  LR +A    +  +
Sbjct: 1   MAVTSLAPPWVILRLAFRSVA-ASSCLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 57

Query: 60  AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
           A+KG+ D LLKGVGD+   +EVK ILEMARRASS+REVLH+DFLTPP++KES+  LEK A
Sbjct: 58  AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 117

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 118 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 177

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I+REK+GDI++Q EKGAQ L+VPEL D+++T+L+KVGNV V+C++IPLLALEYEPPRT S
Sbjct: 178 ISREKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNS 237

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           FKT+EASLR+DA+ASAGFK+SRSKLV+LIS+ DVRVNW TVTKNGT ++TGD+VSVSGKG
Sbjct: 238 FKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKG 297

Query: 300 RIKIGEINSTRKGKFAVELIQYL 322
           R+KIGEIN T+KGKFAVE+I+YL
Sbjct: 298 RLKIGEINETKKGKFAVEIIRYL 320


>gi|357452969|ref|XP_003596761.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
 gi|355485809|gb|AES67012.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
          Length = 325

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/328 (65%), Positives = 264/328 (80%), Gaps = 9/328 (2%)

Query: 1   MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
           MAA   S    W LRR  + F+L         G+        T    +F TS   + SG 
Sbjct: 1   MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57

Query: 55  RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
              +QA K   D LLKGVG+K+   EVKH+LEMARRAS +RE+LH++FLTPPVLKESM  
Sbjct: 58  STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQV 117

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
           LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177

Query: 175 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
           ILGTGIAREK+GDIILQGE+GAQ +VVPEL ++L ++L+KV NV V+CT+IPL++L+YEP
Sbjct: 178 ILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDKVRNVPVTCTKIPLISLDYEP 237

Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 294
           PRTKSFKTIEASLRVDA+ASAGFK+SRSKLV++ISNGDVR+NW  +T  GTT+++GD+VS
Sbjct: 238 PRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPITTKGTTVKSGDLVS 297

Query: 295 VSGKGRIKIGEINSTRKGKFAVELIQYL 322
           VSG GR+KIGE+N+T+KGKFAVELI+YL
Sbjct: 298 VSGLGRLKIGEVNTTKKGKFAVELIRYL 325


>gi|217074322|gb|ACJ85521.1| unknown [Medicago truncatula]
          Length = 325

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/328 (65%), Positives = 264/328 (80%), Gaps = 9/328 (2%)

Query: 1   MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
           MAA   S    W LRR  + F+L         G+        T    +F TS   + SG 
Sbjct: 1   MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57

Query: 55  RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
              +QA K   D LLKGVG+K+   EVKH+LEMARRAS +RE+LH++FLTPPVLKESM  
Sbjct: 58  STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMRV 117

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
           LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177

Query: 175 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
           ILGTGIAREK+GDIILQGE+GAQ +VVPEL ++L ++L+KV NV V+CT+IPL++L+YEP
Sbjct: 178 ILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDKVRNVPVTCTKIPLISLDYEP 237

Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 294
           PRTKSFKTIEASLRVDA+ASAGFK+SRSKLV++ISNGDVR+NW  +T  GTT+++GD+VS
Sbjct: 238 PRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPITTKGTTVKSGDLVS 297

Query: 295 VSGKGRIKIGEINSTRKGKFAVELIQYL 322
           VSG GR+KIGE+N+T+KGKFAVELI+YL
Sbjct: 298 VSGLGRLKIGEVNTTKKGKFAVELIRYL 325


>gi|224114944|ref|XP_002316899.1| predicted protein [Populus trichocarpa]
 gi|222859964|gb|EEE97511.1| predicted protein [Populus trichocarpa]
          Length = 268

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/267 (80%), Positives = 240/267 (89%), Gaps = 1/267 (0%)

Query: 56  HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
           H+ QA KG     LKGV DK+ IEEVK IL+MARRAS RREVLH+DFLTPP LKES+  L
Sbjct: 3   HVAQATKGEVV-ALKGVEDKSVIEEVKRILDMARRASLRREVLHTDFLTPPTLKESLHVL 61

Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
           EKLADVKA+AQGGYPQAERCRLSVGHPE LTSDPDIVAALSITGNFGFQ CSHGDFLG+I
Sbjct: 62  EKLADVKAIAQGGYPQAERCRLSVGHPETLTSDPDIVAALSITGNFGFQLCSHGDFLGAI 121

Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
           LGTGIAR K+GDII+ G K AQ L+VP+L DY+++SL+KVG+VSVSCT IPL A+EYEPP
Sbjct: 122 LGTGIARNKLGDIIVLGGKRAQVLLVPDLVDYIVSSLDKVGDVSVSCTPIPLHAIEYEPP 181

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           RTKSFKT+EASLRVDALASAGFK+SRSKLV+LISN DVRVNWTT+TKN TTL+TGD+VSV
Sbjct: 182 RTKSFKTVEASLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDVVSV 241

Query: 296 SGKGRIKIGEINSTRKGKFAVELIQYL 322
           SGKGR+KIGEIN+TRKGKFAVELI YL
Sbjct: 242 SGKGRLKIGEINTTRKGKFAVELIHYL 268


>gi|297847696|ref|XP_002891729.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337571|gb|EFH67988.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 759

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/316 (64%), Positives = 247/316 (78%), Gaps = 27/316 (8%)

Query: 1   MAAISLAAPWI-LRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
           MA  SLA PWI LR+  R+ +     LH N  +       P +FP  LRH+A    ++ +
Sbjct: 439 MAVTSLAPPWIILRQTFRSVA-ASSYLHSNHKTLISNLSIPASFP--LRHSALRRCYIAE 495

Query: 60  AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
           A+KG+ D LLKGVGD+   +EVK ILEMARRA+S+REVLH+DFLTPP++KES++ L K A
Sbjct: 496 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRAASKREVLHTDFLTPPIVKESVLVLGKFA 555

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           DVK VAQGGYP+AERCR+S+GHP+ LT+DPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 556 DVKIVAQGGYPEAERCRISIGHPDVLTNDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 615

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I+REK+GDI++Q                       VGNV V+CT+IPLLALEYEPPRT S
Sbjct: 616 ISREKLGDILIQ-----------------------VGNVGVTCTKIPLLALEYEPPRTNS 652

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           FKT+EASLR+DA+ASAGFK+SRSKLV+LISN DVRVNW TVTKNGTT++TGD+VSVSGKG
Sbjct: 653 FKTVEASLRIDAVASAGFKISRSKLVDLISNKDVRVNWATVTKNGTTVKTGDVVSVSGKG 712

Query: 300 RIKIGEINSTRKGKFA 315
           R+KIGEIN T+KGKFA
Sbjct: 713 RLKIGEINETKKGKFA 728


>gi|242054411|ref|XP_002456351.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
 gi|241928326|gb|EES01471.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
          Length = 304

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/263 (73%), Positives = 235/263 (89%)

Query: 60  AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
           AV    D  +KG  D+N+ EEV++IL+MA+RAS RR+V H++FLTPP++KE+M+A+EKLA
Sbjct: 42  AVAAARDSAVKGSVDRNSAEEVRNILDMAQRASQRRDVFHTNFLTPPIVKEAMLAVEKLA 101

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           D+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF  +PCSHGDFLG+ILGTG
Sbjct: 102 DIKAVAQGGYPQAERCRISVGHPDFMTSNPDVVAALSISGNFRLEPCSHGDFLGAILGTG 161

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I REK+GDI+LQGE+GAQ LV P L DYLI++LEKVG V VSCT+IPLLALEYEPPRT S
Sbjct: 162 ITREKVGDILLQGERGAQVLVDPGLVDYLISTLEKVGKVGVSCTQIPLLALEYEPPRTNS 221

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           FKT+E+SLRVDALASAGFK+SR+KL +LIS+GDVRVNWT  TKNG TL++GD+VSVSG G
Sbjct: 222 FKTVESSLRVDALASAGFKISRTKLASLISSGDVRVNWTPTTKNGVTLKSGDVVSVSGMG 281

Query: 300 RIKIGEINSTRKGKFAVELIQYL 322
           R+KIGEI +TRKGK+AVELI+YL
Sbjct: 282 RLKIGEIVTTRKGKYAVELIRYL 304


>gi|212274707|ref|NP_001130102.1| uncharacterized protein LOC100191195 [Zea mays]
 gi|194688290|gb|ACF78229.1| unknown [Zea mays]
 gi|223975061|gb|ACN31718.1| unknown [Zea mays]
 gi|414880496|tpg|DAA57627.1| TPA: RNA-binding S4 isoform 1 [Zea mays]
 gi|414880497|tpg|DAA57628.1| TPA: RNA-binding S4 isoform 2 [Zea mays]
 gi|414880498|tpg|DAA57629.1| TPA: RNA-binding S4 isoform 3 [Zea mays]
          Length = 304

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/263 (73%), Positives = 230/263 (87%)

Query: 60  AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
           AV    D  +KG  D+N+ EEV++IL MA RAS RR V H++FLTPP++KE+M+ALEK A
Sbjct: 42  AVAAARDLAVKGSVDRNSAEEVRNILNMAERASQRRNVFHTNFLTPPIVKEAMLALEKFA 101

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           D KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF  + CSHGDFLG+ILGTG
Sbjct: 102 DTKAVAQGGYPQAERCRISVGHPDVMTSNPDVVAALSISGNFRLESCSHGDFLGAILGTG 161

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I REK+GDI+LQGE+GAQ LV PEL DYLI++LEKVG V VSCT+IPLLALEYEPPRT S
Sbjct: 162 ITREKVGDILLQGERGAQVLVDPELVDYLISTLEKVGKVGVSCTQIPLLALEYEPPRTNS 221

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           FKT+E+SLRVDALASAGFK+SR+KL +LIS+GDVRVNWT  TKNG TL++GD+VSVSG G
Sbjct: 222 FKTVESSLRVDALASAGFKISRTKLASLISSGDVRVNWTPTTKNGVTLKSGDVVSVSGMG 281

Query: 300 RIKIGEINSTRKGKFAVELIQYL 322
           R+KIGEI +TRKGK+AVELI+YL
Sbjct: 282 RLKIGEIVTTRKGKYAVELIRYL 304


>gi|218189042|gb|EEC71469.1| hypothetical protein OsI_03722 [Oryza sativa Indica Group]
          Length = 305

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/326 (62%), Positives = 251/326 (76%), Gaps = 28/326 (8%)

Query: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFT---FPTSLRHTASGIRHLI 58
           AA+SLA+P  LRR +                     H PF     PTS     SG  H  
Sbjct: 3   AAVSLASP--LRRVL---------------------HVPFARRAIPTSYHFIPSGRCHAA 39

Query: 59  QAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE 116
            +       D  +K   D+NA EE++ IL+MA+RAS RR+V H++FLTPP++KE M+A+E
Sbjct: 40  LSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRASQRRDVFHTNFLTPPIVKECMLAIE 99

Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
           KLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF  +PCSHGDFLG+IL
Sbjct: 100 KLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVVAALSISGNFRLEPCSHGDFLGAIL 159

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
           GTGI R+K+GDI+LQGE+GAQ LV PEL DYL ++LEKVG V VSCT+IPLLALEYEPPR
Sbjct: 160 GTGITRDKVGDILLQGERGAQVLVDPELVDYLTSTLEKVGKVGVSCTQIPLLALEYEPPR 219

Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
           TKSFKT+E+SLRVDAL SAGFK+SR+KL +LIS GDVRVNW+ V+KNG TL+ GD+VSVS
Sbjct: 220 TKSFKTVESSLRVDALGSAGFKISRTKLASLISAGDVRVNWSPVSKNGVTLKAGDVVSVS 279

Query: 297 GKGRIKIGEINSTRKGKFAVELIQYL 322
           G GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 280 GMGRLKIGEIVTTRKGKYAVELIRYL 305


>gi|195639066|gb|ACG39001.1| RNA-binding S4 [Zea mays]
          Length = 304

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/263 (72%), Positives = 230/263 (87%)

Query: 60  AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
           AV    D  +KG  D+N+ EEV++IL MA RAS RR+V H++FLTPP++KE+M+ALEK A
Sbjct: 42  AVAAARDSAVKGSVDRNSAEEVRNILNMAERASQRRDVFHTNFLTPPIVKETMLALEKFA 101

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           D KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF  + CSHGDFLG+ILGTG
Sbjct: 102 DTKAVAQGGYPQAERCRISVGHPDVMTSNPDVVAALSISGNFRLESCSHGDFLGAILGTG 161

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I REK+GDI+LQGE+GAQ LV PEL DYLI++LEKVG V VSCT+IPLLALEYEPPRT S
Sbjct: 162 ITREKVGDILLQGERGAQVLVDPELVDYLISTLEKVGKVGVSCTQIPLLALEYEPPRTNS 221

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           FKT+E+SLRVDALASAGFK+SR+KL +LIS+GDVRVNWT  TKNG TL++ D+VSVSG G
Sbjct: 222 FKTVESSLRVDALASAGFKISRTKLASLISSGDVRVNWTPTTKNGVTLKSRDVVSVSGMG 281

Query: 300 RIKIGEINSTRKGKFAVELIQYL 322
           R+KIGEI +TRKGK+AVELI+YL
Sbjct: 282 RLKIGEIVTTRKGKYAVELIRYL 304


>gi|297597609|ref|NP_001044235.2| Os01g0747700 [Oryza sativa Japonica Group]
 gi|57899502|dbj|BAD86964.1| S4 domain protein-like [Oryza sativa Japonica Group]
 gi|255673682|dbj|BAF06149.2| Os01g0747700 [Oryza sativa Japonica Group]
          Length = 305

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/290 (67%), Positives = 239/290 (82%), Gaps = 5/290 (1%)

Query: 38  HRPFT---FPTSLRHTASGIRHLIQAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRAS 92
           H PF     PTS     SG  H   +       D  +K   D+NA EE++ IL+MA+RAS
Sbjct: 16  HVPFARRAIPTSYHFFPSGRCHAALSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRAS 75

Query: 93  SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
            RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+V
Sbjct: 76  QRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVV 135

Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
           AALSI+GNF  +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL DYL ++L
Sbjct: 136 AALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVDYLTSTL 195

Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
           EKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +LIS GD
Sbjct: 196 EKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLASLISAGD 255

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322
           VRVNW+ V+KNG TL+ GD+VSVSG GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 256 VRVNWSPVSKNGVTLKAGDVVSVSGMGRLKIGEIVTTRKGKYAVELIRYL 305


>gi|9454543|gb|AAF87866.1|AC022520_10 Unknown protein [Arabidopsis thaliana]
          Length = 773

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/313 (64%), Positives = 240/313 (76%), Gaps = 27/313 (8%)

Query: 1   MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
           MA  SLA PW ILR A R+ +     LH N  +       P +FP  LR +A    +  +
Sbjct: 453 MAVTSLAPPWVILRLAFRSVA-ASSCLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 509

Query: 60  AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
           A+KG+ D LLKGVGD+   +EVK ILEMARRASS+REVLH+DFLTPP++KES+  LEK A
Sbjct: 510 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 569

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 570 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 629

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I+REK+GDI++Q                       VGNV V+C++IPLLALEYEPPRT S
Sbjct: 630 ISREKLGDILIQ-----------------------VGNVGVTCSKIPLLALEYEPPRTNS 666

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           FKT+EASLR+DA+ASAGFK+SRSKLV+LIS+ DVRVNW TVTKNGT ++TGD+VSVSGKG
Sbjct: 667 FKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKG 726

Query: 300 RIKIGEINSTRKG 312
           R+KIGEIN T+K 
Sbjct: 727 RLKIGEINETKKA 739


>gi|326523405|dbj|BAJ88743.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 305

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 225/257 (87%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           D   KG   ++  EEV  IL+MA+RAS RR+V H+ FLTPP++ E+M+A+EKLAD+KA+A
Sbjct: 49  DSSAKGSVHRHVTEEVMGILDMAQRASQRRDVFHTSFLTPPIITEAMLAIEKLADIKAIA 108

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           QGGYPQAERCR+SVGHP+++ +DPD+VAALSI+GNF  +PCSHGDFLG+ILG GI R+K+
Sbjct: 109 QGGYPQAERCRISVGHPDSMRNDPDVVAALSISGNFRLEPCSHGDFLGAILGAGITRDKV 168

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI+LQGE+GAQ LV PEL DYL ++LEKVG V VSCT+IPLLA+EYEPPRTKSFKT+E+
Sbjct: 169 GDILLQGERGAQVLVDPELVDYLTSTLEKVGKVGVSCTQIPLLAIEYEPPRTKSFKTVES 228

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLRVDA+ASAGFK+SR+KL ++IS+GDVRVNW+ V+K+G TL+ GD+VSVSG GR+KIGE
Sbjct: 229 SLRVDAVASAGFKISRTKLGSMISSGDVRVNWSLVSKSGATLKAGDVVSVSGMGRLKIGE 288

Query: 306 INSTRKGKFAVELIQYL 322
           I +T+KGK+ V+LIQYL
Sbjct: 289 IVTTKKGKYVVQLIQYL 305


>gi|222619243|gb|EEE55375.1| hypothetical protein OsJ_03443 [Oryza sativa Japonica Group]
          Length = 290

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 221/271 (81%), Gaps = 5/271 (1%)

Query: 38  HRPFT---FPTSLRHTASGIRHLIQAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRAS 92
           H PF     PTS     SG  H   +       D  +K   D+NA EE++ IL+MA+RAS
Sbjct: 16  HVPFARRAIPTSYHFFPSGRCHAALSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRAS 75

Query: 93  SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
            RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+V
Sbjct: 76  QRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVV 135

Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
           AALSI+GNF  +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL DYL ++L
Sbjct: 136 AALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVDYLTSTL 195

Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
           EKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +LIS GD
Sbjct: 196 EKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLASLISAGD 255

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           VRVNW+ V+KNG TL+ GD+VSVSG GR+KI
Sbjct: 256 VRVNWSPVSKNGVTLKAGDVVSVSGMGRLKI 286


>gi|255586534|ref|XP_002533905.1| RNA binding protein, putative [Ricinus communis]
 gi|223526138|gb|EEF28479.1| RNA binding protein, putative [Ricinus communis]
          Length = 231

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 198/218 (90%)

Query: 51  ASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKE 110
           A GI  L QA+K    DLLK VGDK+ +EEVKHIL+MARRASSRRE LH+DFLTPP+LKE
Sbjct: 13  ALGICQLAQAMKSEVSDLLKSVGDKSVVEEVKHILDMARRASSRREALHTDFLTPPILKE 72

Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
           SM+ LEKLAD+KAV QGGYPQAERCRLSVGHPEAL +DPDI+AALSITGNF FQPCSHGD
Sbjct: 73  SMLLLEKLADIKAVGQGGYPQAERCRLSVGHPEALMNDPDIIAALSITGNFAFQPCSHGD 132

Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
           FLGSILGTGI+REK+GDIILQGEKGAQ L VPEL D++++SL+KVGNVSVSC RIPLLAL
Sbjct: 133 FLGSILGTGISREKVGDIILQGEKGAQILTVPELVDFIMSSLDKVGNVSVSCARIPLLAL 192

Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
           EYEPPRT++F TIEASLRVDALASAGFK+SRSKLV+LI
Sbjct: 193 EYEPPRTRTFNTIEASLRVDALASAGFKISRSKLVDLI 230


>gi|116784861|gb|ABK23497.1| unknown [Picea sitchensis]
          Length = 332

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 220/257 (85%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +D LKG+   +A   VK IL  A++A+S RE+ HSDFL PPV+++++ A++KL+DV+A+ 
Sbjct: 76  EDHLKGLSKGSAESPVKLILVQAQKAASGREIFHSDFLMPPVVEDALSAIKKLSDVEALV 135

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           QGGYPQAERCRLS+GH + ++S PD V+ALSI+GNF F P SHGDFLG++L TGI REK+
Sbjct: 136 QGGYPQAERCRLSIGHTDVISSAPDAVSALSISGNFTFDPASHGDFLGAVLATGIRREKV 195

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI+LQGEKGAQ +VVPEL DY+++SL +V NV VSC+ IPLLALE++PPRTK  K++EA
Sbjct: 196 GDILLQGEKGAQIIVVPELVDYIVSSLTQVHNVPVSCSPIPLLALEFQPPRTKVLKSVEA 255

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLRVDA+ASAGF++SRSKLVNLIS GDVRVNW+ VTKNGT L+TGDI+S+ GKGR+++GE
Sbjct: 256 SLRVDAIASAGFQMSRSKLVNLISGGDVRVNWSEVTKNGTLLKTGDIISIKGKGRVQLGE 315

Query: 306 INSTRKGKFAVELIQYL 322
           I +TRKGKFAV+LI+YL
Sbjct: 316 IKTTRKGKFAVDLIRYL 332


>gi|357136417|ref|XP_003569801.1| PREDICTED: putative RNA-binding protein ylmH-like [Brachypodium
           distachyon]
          Length = 222

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 158/219 (72%), Positives = 196/219 (89%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           IL+MA  AS RR+V H+ FLTPPV+KE+M+A+EKLA +KAVAQGGYPQAERCR+SVGHP+
Sbjct: 3   ILDMAETASQRRDVFHTSFLTPPVIKEAMLAIEKLAGIKAVAQGGYPQAERCRISVGHPD 62

Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
           ++ S+PD+VAALSI+GNF  +PCSHGDFLG+ILG GI REK+GDI+LQ E+GAQ LV P+
Sbjct: 63  SMKSNPDVVAALSISGNFRLEPCSHGDFLGAILGAGITREKVGDILLQEERGAQVLVDPD 122

Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           L DYL ++LEKVG V VSCT+IPLLALEYEPP+TKSFKT+E+SLRVDA+ASAGFK+SR+K
Sbjct: 123 LVDYLTSTLEKVGKVGVSCTQIPLLALEYEPPKTKSFKTVESSLRVDAVASAGFKISRTK 182

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           L +LIS+GDVRVNW+ V+K+G TL+ GD+VSVSG GR+K
Sbjct: 183 LGSLISSGDVRVNWSPVSKSGATLKAGDVVSVSGMGRLK 221


>gi|168015016|ref|XP_001760047.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688797|gb|EDQ75172.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 276

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 200/266 (75%), Gaps = 10/266 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LL GV DK  +++V  ILE AR A+ R EV HS FLTPPVL +++ A+ +L+DV  + 
Sbjct: 12  NHLLLGV-DKAHVDDVARILEQARTAADRWEVAHSAFLTPPVLNDALTAVRRLSDVGVLV 70

Query: 126 QGGYPQAERCRLSVGHPEALTSD---------PDIVAALSITGNFGFQPCSHGDFLGSIL 176
            GGY QAERCRLSVGH E + +          P  VAALS++GNF F+  +HGDFLGSIL
Sbjct: 71  SGGYAQAERCRLSVGHVETIEAGSLEGGNAGYPGAVAALSVSGNFMFESATHGDFLGSIL 130

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
           GTG+ R+K+GDII+QGEKGAQ LVVPEL ++  +SL +V NV+V  + IPL AL+ + PR
Sbjct: 131 GTGVTRDKVGDIIMQGEKGAQILVVPELVEFFCSSLVQVRNVAVQTSAIPLSALQVKAPR 190

Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
             +FK++EASLRVDAL SAGF++SRSKL  LIS+G+VRVNW  VTK   TL+TGD+VSV 
Sbjct: 191 VDTFKSVEASLRVDALTSAGFRMSRSKLAELISSGEVRVNWKEVTKTSLTLKTGDVVSVR 250

Query: 297 GKGRIKIGEINSTRKGKFAVELIQYL 322
           GKGRI++GEI  T+KG++AVEL +YL
Sbjct: 251 GKGRIQVGEIVMTKKGRYAVELTRYL 276


>gi|302767986|ref|XP_002967413.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
 gi|300165404|gb|EFJ32012.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
          Length = 245

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/244 (56%), Positives = 182/244 (74%), Gaps = 9/244 (3%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
            A RA  R+EVLH+DFLTPP L+ES+  + KLADV  V  GGY QAERCRLS+G  + + 
Sbjct: 1   QADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIR 60

Query: 147 SD-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII-LQGEKGAQF 198
           +        P  V+ALS++G F     +HGDFLG++LGTGI REK+GDII L   +GAQ 
Sbjct: 61  ASQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIVLDCSQGAQI 120

Query: 199 LVVPELADYLITSLEKV-GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           LVVPEL +YLI SL++  G + + C  IPL  +E   PR K+ K++EASLR+DA+ASAGF
Sbjct: 121 LVVPELVEYLIASLKQASGRIRLQCKEIPLAEIEIHKPRVKALKSVEASLRLDAVASAGF 180

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           KLSRSKL +LIS GDVR+NW   TK+ T+L++GD++S++GKGR++IGEI +T+KGKF+VE
Sbjct: 181 KLSRSKLADLISKGDVRLNWKEATKSNTSLKSGDVISLAGKGRLQIGEIETTKKGKFSVE 240

Query: 318 LIQY 321
           +I+Y
Sbjct: 241 MIRY 244


>gi|302753752|ref|XP_002960300.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
 gi|300171239|gb|EFJ37839.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
          Length = 245

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/244 (55%), Positives = 180/244 (73%), Gaps = 9/244 (3%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
            A RA  R+EVLH+DFLTPP L+ES+  + KLADV  V  GGY QAERCRLS+G  + + 
Sbjct: 1   QADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIR 60

Query: 147 SD-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII-LQGEKGAQF 198
           +        P  V+ALS++G F     +HGDFLG++LGTGI REK+GDII L   +GAQ 
Sbjct: 61  ASQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIVLDCSQGAQI 120

Query: 199 LVVPELADYLITSLEKV-GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           LV PEL +YLI SL++  G + + C  IPL  +E   PR K+ K++EASLR+DA+ASAGF
Sbjct: 121 LVAPELVEYLIASLKQASGRIRLQCKEIPLAEIEIHKPRVKALKSVEASLRLDAVASAGF 180

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           KLSRSKL +LIS GDVR+NW   TK+ T+L++GD++S++GKGR++IGEI +T+KGKF+VE
Sbjct: 181 KLSRSKLADLISKGDVRLNWKEATKSNTSLKSGDVISLAGKGRLQIGEIETTKKGKFSVE 240

Query: 318 LIQY 321
           +I Y
Sbjct: 241 MICY 244


>gi|307106329|gb|EFN54575.1| hypothetical protein CHLNCDRAFT_35967 [Chlorella variabilis]
          Length = 332

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 183/263 (69%), Gaps = 7/263 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           DDLL+GV D    E V  ++E+A+RA+    VLHSDF TPPV+ +++M L+++ADV  VA
Sbjct: 71  DDLLRGV-DAEHRESVARVVELAQRAADSWAVLHSDFHTPPVVADALMVLQRMADVAGVA 129

Query: 126 QGGYPQAERCRLSVGHPEA---LTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTG 179
            GGYPQAERCRL+VG  EA   L  DP     VAA+ +TGNF F P SH DFLG+ LGTG
Sbjct: 130 WGGYPQAERCRLAVGREEAVEGLAGDPSQLGGVAAVEVTGNFMFDPASHRDFLGACLGTG 189

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I R K+GDI+++GE+GAQ LV P L ++L  +L +V  V V    + L  L+   PR + 
Sbjct: 190 IERGKVGDIVVRGEQGAQILVAPNLVEHLEAALTQVRTVPVRAAAVALSELQVRAPRVEE 249

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
             ++E+SLR+DA+ASAGF++SRSK+ +LI  GDVRVNW    K    ++ GD+VSV+GKG
Sbjct: 250 LSSVESSLRLDAVASAGFRMSRSKMADLIKAGDVRVNWRAAGKASAEVQAGDVVSVAGKG 309

Query: 300 RIKIGEINSTRKGKFAVELIQYL 322
           R+++     T+KGK +V++++YL
Sbjct: 310 RLEVKAAAMTKKGKHSVQMVRYL 332


>gi|388517071|gb|AFK46597.1| unknown [Medicago truncatula]
          Length = 222

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 163/220 (74%), Gaps = 9/220 (4%)

Query: 1   MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
           MAA   S    W LRR  + F+L         G+        T    +F TS   + SG 
Sbjct: 1   MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57

Query: 55  RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
              +QA K   D LLKGVG+K+   EVKH+LEMARRAS +RE+LH++FLTPPVLKESM  
Sbjct: 58  STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMRV 117

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
           LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177

Query: 175 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
           ILGTGIAREK+GDIILQGE+GAQ +VVPEL ++L ++L++
Sbjct: 178 ILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDR 217


>gi|159465535|ref|XP_001690978.1| hypothetical protein CHLREDRAFT_128015 [Chlamydomonas reinhardtii]
 gi|158279664|gb|EDP05424.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 291

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/250 (50%), Positives = 175/250 (70%), Gaps = 7/250 (2%)

Query: 80  EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139
           EV  +LE+A RA+ R +V+ +DFLTPP++ +SM AL+   DV  V  GGY QAERCRL++
Sbjct: 42  EVARVLEIAERATDRWDVVWTDFLTPPIVADSMAALQGRQDVICVPWGGYAQAERCRLAL 101

Query: 140 GHPE---ALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
           G  E   +L SDP   D V AL + GNF F P  H DFLG+ILGT G+ REK+GDI++QG
Sbjct: 102 GREELMESLRSDPQQLDGVVALQVKGNFMFDPAKHPDFLGAILGTAGVVREKVGDILVQG 161

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           E GAQ LV P+L ++  TSL +V  V V   RIPL  L   PPR + F ++EAS+R+DA+
Sbjct: 162 ESGAQILVDPDLVEHFETSLVQVRTVPVETRRIPLSELSVRPPRQEEFSSVEASMRLDAI 221

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ASAGF++SR+K+ ++I  GDVR+NW  VTK    ++ GD++S SGKGR++I     T+K 
Sbjct: 222 ASAGFRMSRTKIGDMIKAGDVRLNWRPVTKPSVEVKEGDVISCSGKGRVEIKACEMTKKE 281

Query: 313 KFAVELIQYL 322
           K+AV +++Y+
Sbjct: 282 KYAVTMMRYV 291


>gi|443328134|ref|ZP_21056736.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
 gi|442792216|gb|ELS01701.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
          Length = 259

 Score =  254 bits (648), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/257 (49%), Positives = 180/257 (70%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +DLLKGV ++   EEV  +++ A +A    E++ +DFL+PPVL E      KL D++ +A
Sbjct: 5   EDLLKGVENR---EEVARVIDKAEQAVRTWEIVLTDFLSPPVLFEVQRIFGKLTDIELLA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   E    +  I +AAL I GNF F   +H DFLGSILGTGI REK
Sbjct: 62  WGGYPQAERQRLGLARLEMPLDNSHIELAALDIAGNFLFDTATHRDFLGSILGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPE+ ++L TSL +V +V+V   +I    L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQVIVVPEMVEFLTTSLTQVRSVAVKTRQIDFSELKIRPPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+ N+I+ GDVR+NW  +T+    ++ GD++SV GKGR++IG
Sbjct: 182 ASLRLDAIASAGFGMSRSKMANVITAGDVRINWKDITQASYNVKAGDLISVRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQY 321
           E++ T+K ++ V L++Y
Sbjct: 242 EVSVTKKQRYRVNLVRY 258


>gi|428205885|ref|YP_007090238.1| photosystem II S4 domain-containing protein [Chroococcidiopsis
           thermalis PCC 7203]
 gi|428007806|gb|AFY86369.1| photosystem II S4 domain protein [Chroococcidiopsis thermalis PCC
           7203]
          Length = 259

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/258 (48%), Positives = 182/258 (70%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +DLLKGV ++ AI     ++++A +A    EV+ +DFL+PP L ES     +L DV+ VA
Sbjct: 5   EDLLKGVENREAI---VRVIDLAEQAIKTWEVVLTDFLSPPELAESQQIFSRLTDVQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E  L S    VAA+ I GNF F   +H DFLG++LGTGI R+K
Sbjct: 62  WGGYPQAERQRLAIARAEVPLDSSQVTVAAIDIAGNFLFDTATHRDFLGAMLGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPEL ++L  +L++V +V V   +I L  L  + P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELVEFLAMNLKQVRSVPVKIQQIELSELRIKEPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI  GDVRVNW  ++++ T ++TGD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIEGGDVRVNWKEMSQSSTQVKTGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +Y+
Sbjct: 242 EVAVTKKERYRVQLTRYM 259


>gi|302832532|ref|XP_002947830.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
           nagariensis]
 gi|300266632|gb|EFJ50818.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
           nagariensis]
          Length = 300

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/272 (46%), Positives = 178/272 (65%), Gaps = 6/272 (2%)

Query: 57  LIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE 116
           L  A+KG   D      D     +V  +LE+A RA+ R +V+ +DFL PP++ +SM AL 
Sbjct: 29  LASALKGQGTDTALAWVDPANRRDVARVLEIAERAAQRWDVVWTDFLPPPIVADSMAALA 88

Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPE---ALTSDP---DIVAALSITGNFGFQPCSHGD 170
              D+  +  GGY QAERCR+++G  E    L SDP   D VAAL + GNF F P  H D
Sbjct: 89  SRTDIVCLPWGGYAQAERCRIALGREELMEPLQSDPQQLDGVAALQVKGNFMFDPAKHPD 148

Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
           FLG+ILGTG+ R+K+GDI++QGE GAQ LV PEL ++   SL +V  V V   RI L  L
Sbjct: 149 FLGAILGTGVVRDKVGDILVQGEAGAQILVDPELVEHFEMSLVQVRTVPVEVRRIALSEL 208

Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG 290
              PPR +   ++EASLR+DA+ASAGF++SR+K+ +LI  GDVR+NW  VTK    ++ G
Sbjct: 209 SVRPPRQEEVSSVEASLRLDAIASAGFRMSRTKMGDLIKAGDVRLNWRPVTKTSVDVKAG 268

Query: 291 DIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322
           D++S +GKGR+++  ++ TRK K+ V L++Y+
Sbjct: 269 DVISCAGKGRLEVRAVDVTRKEKYLVTLLRYV 300


>gi|428220252|ref|YP_007104422.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
           7502]
 gi|427993592|gb|AFY72287.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7502]
          Length = 258

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 178/258 (68%), Gaps = 6/258 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL G+  +   E +  +L++  +A    EV+ SDFL+P  L E+    +K  +VK V  
Sbjct: 5   DLLTGLEHR---EVISRLLDLGDQALQTWEVVCSDFLSPSELIEAQQVFKKFTEVKFVIY 61

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGY QAERCR+++ H + L  +P++V  AA+ I+GNF F P SH DFLG+ILGTGI R+K
Sbjct: 62  GGYAQAERCRMAIAHID-LPLEPEMVNLAAIDISGNFLFDPASHRDFLGAILGTGIERQK 120

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GD+IL GEKGAQ +VVPEL +YL  SL +V  V V    I L  L+  PP+TK   T+E
Sbjct: 121 VGDLILLGEKGAQVIVVPELVEYLSVSLNQVRTVPVKVRSIELANLKIRPPQTKEIATVE 180

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+ I   DVRVNW +VT+    L++GD+V+VSGKGR+ +G
Sbjct: 181 ASLRLDAIASAGFGMSRSKMVDFIDGDDVRVNWKSVTQPSYQLKSGDLVAVSGKGRLAVG 240

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ V L ++L
Sbjct: 241 EITVTKKNRYRVLLTRFL 258


>gi|434397141|ref|YP_007131145.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
 gi|428268238|gb|AFZ34179.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
          Length = 259

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 122/257 (47%), Positives = 179/257 (69%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LL GV ++   EEV  I++ A +A    EV+ +DFL+P VL E+     KL +V+ VA
Sbjct: 5   EELLAGVENR---EEVARIIDQAEQAIKTWEVVLTDFLSPRVLIETQAIFSKLTEVEIVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +       I + AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62  WGGYPQAERQRLGIARQDIPIDQSQIDLVALDIAGNFLFDPATHRDFLGAILGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI++ GE+GAQ +VVPE+ ++L TSL +V +V V   RI L  L+  PP+ K   T+E
Sbjct: 122 VGDILVLGERGAQVIVVPEMVEFLETSLTQVRSVPVKTQRIDLSELKVRPPQKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ + IS+GDVRVNW  +T+   +++ GD++SVSGKGR+++G
Sbjct: 182 ASMRLDAIASAGFGMSRSKMADAISSGDVRVNWKEITQPSYSVKAGDLISVSGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQY 321
           E+  T+K ++ + L+++
Sbjct: 242 EVAVTKKQRYRINLVRF 258


>gi|67923764|ref|ZP_00517228.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
 gi|67854391|gb|EAM49686.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
          Length = 275

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 121/257 (47%), Positives = 175/257 (68%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LLKGV ++    E+  I++ A  A    EV+ SDF +PPV+ E      +L D++ V 
Sbjct: 21  ETLLKGVENRT---EITRIVDQAEIAVKTWEVVVSDFFSPPVIAEVENGFSRLTDIEIVV 77

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +  PE     P I +AAL I GNF F P SH DFLG+IL TGI REK
Sbjct: 78  WGGYPQAERRRIGIARPEIPLEQPQIPLAALDIAGNFLFDPASHRDFLGAILATGIVREK 137

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+G Q +VVPEL ++L TSL +V +V V   +I L  L+  PP+TK   T+E
Sbjct: 138 IGDIIVLGERGGQVIVVPELVEFLETSLTQVRSVPVKTQQIELSELKIRPPKTKEMTTVE 197

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ + I+ GDVRVNW   +++   +++GD+++V GKGR+++G
Sbjct: 198 ASMRLDAIASAGFGMSRSKMSDAINRGDVRVNWKETSQSSYNVKSGDLITVRGKGRLEVG 257

Query: 305 EINSTRKGKFAVELIQY 321
           E+  T+K ++ ++L ++
Sbjct: 258 EVAITKKQRYRIQLTRF 274


>gi|416399374|ref|ZP_11686955.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
 gi|357262400|gb|EHJ11533.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
          Length = 259

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 121/257 (47%), Positives = 175/257 (68%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LLKGV ++    E+  I++ A  A    EV+ SDF +PPV+ E      +L D++ V 
Sbjct: 5   ETLLKGVENRT---EITRIVDQAEIAVKTWEVVVSDFFSPPVIAEVENGFSRLTDIEIVV 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +  PE     P I +AAL I GNF F P SH DFLG+IL TGI REK
Sbjct: 62  WGGYPQAERRRIGIARPEIPLEQPQIPLAALDIAGNFLFDPASHRDFLGAILATGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+G Q +VVPEL ++L TSL +V +V V   +I L  L+  PP+TK   T+E
Sbjct: 122 IGDIIVLGERGGQVIVVPELVEFLETSLTQVRSVPVKTQQIELSELKIRPPKTKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ + I+ GDVRVNW   +++   +++GD+++V GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGMSRSKMSDAINRGDVRVNWKETSQSSYNVKSGDLITVRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQY 321
           E+  T+K ++ ++L ++
Sbjct: 242 EVAITKKQRYRIQLTRF 258


>gi|334119785|ref|ZP_08493869.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
 gi|333457426|gb|EGK86049.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
          Length = 261

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 179/258 (69%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKG+ +++    V   L+ A +A    EV  +DFL+PP L +++   ++L DV+ VA
Sbjct: 7   EELLKGIENRDC---VARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVA 63

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   +       + VAA+ I GNF F   SH DFLG++LGTGI REK
Sbjct: 64  WGGYPQAERQRIAIARSDIPIDSASVNVAAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 123

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GD+I+ GE+GAQ +V+PE+ +YL  SL++V +V V   RI L  L+   P+ K   T+E
Sbjct: 124 TGDVIVLGERGAQAIVMPEMVEYLEMSLQQVRSVPVQTRRIELSELKIREPKKKEMTTVE 183

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ +LI +GDVRVNW  VT+    +++GD+++V+GKGR++IG
Sbjct: 184 ASMRLDAVASAGFAMSRSKMADLIDSGDVRVNWKDVTQASYNVKSGDLIAVTGKGRLEIG 243

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +YL
Sbjct: 244 EVAVTKKERYRVQLTRYL 261


>gi|428319799|ref|YP_007117681.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
           7112]
 gi|428243479|gb|AFZ09265.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
           7112]
          Length = 259

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 179/258 (69%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKG+ ++   E V   L+ A +A    EV  +DFL+PP L +++   ++L DV+ VA
Sbjct: 5   EELLKGIENR---ECVARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   +       + +AA+ I GNF F   SH DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRIAIARSDIPIDSASVSIAAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GD+I+ GE+GAQ +V+PE+ +YL  SL++V +V V   RI L  L+   P+ K   T+E
Sbjct: 122 TGDVIVLGERGAQAIVMPEMVEYLEMSLQQVRSVPVKTQRIELSELKIREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ +LI +GDVRVNW  VT+    +++GD+++V+GKGR++IG
Sbjct: 182 ASMRLDAVASAGFAMSRSKMADLIGSGDVRVNWKDVTQASYNVKSGDLIAVTGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +YL
Sbjct: 242 EVAVTKKERYRVQLTRYL 259


>gi|218441671|ref|YP_002380000.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
           7424]
 gi|218174399|gb|ACK73132.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7424]
          Length = 259

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +DLLKGV ++   EE+  IL+ A +A    E+  +DF +PPVL E     ++L +V+ + 
Sbjct: 5   EDLLKGVENR---EEIARILDKAEQAIRTWEITLTDFFSPPVLAEVQQIFKRLTEVQLIT 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +   E       I +AA+ I GNF F P +H DFLG++LGTGI R+K
Sbjct: 62  WGGYPQAERQRIGLSRSEIPLDISQIELAAVDIAGNFLFDPANHRDFLGAMLGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPEL D+L TSL +V +V V    I L  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELVDFLQTSLVQVRSVPVKTQPIELTDLKIRPPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+   IS+GDVRVNW  +T     +++GD++SV GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGMSRSKMAEAISSGDVRVNWKEITSTSHNIQSGDLISVRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ ++L +Y+
Sbjct: 242 EVAVTKKERYRIQLTRYI 259


>gi|434391054|ref|YP_007126001.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
 gi|428262895|gb|AFZ28841.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
          Length = 259

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/258 (46%), Positives = 179/258 (69%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++I     +++ A++A    EV+ +DFL+PP L E+     +L +V+ +A
Sbjct: 5   EELLKGVENRDSI---ARVIDQAQQAIKTWEVVLTDFLSPPELAETQQVFSRLTEVQTIA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++  PE  L      VAAL I+GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLAIARPEIPLDLSHVAVAALDISGNFLFDTATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPEL ++L  +L++V +V V   RI L  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELVEFLEMNLQQVRSVPVKIQRIELSELKIREPKKKDLTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF  SRSK+ ++I  GDVRVNW  VT+    ++ GD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGTSRSKMADMIDAGDVRVNWKEVTQASAQVKPGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +Y+
Sbjct: 242 EVAVTKKERYRVQLTRYV 259


>gi|428300093|ref|YP_007138399.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
           6303]
 gi|428236637|gb|AFZ02427.1| photosystem II S4 domain protein [Calothrix sp. PCC 6303]
          Length = 259

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/258 (46%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++   V  +++ A +A    E++ +DFL+PP L E+  A  +L +V  VA
Sbjct: 5   EELLKGVENRDS---VARVIDHAEQAIKTWEIVFTDFLSPPELAEAQRAFNRLTEVHLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   +       + +A L + GNF F   +H DFLGS+LGTGI REK
Sbjct: 62  WGGYPQAERQRIAIARSDLPLEQAQVEIAVLDVAGNFLFDTATHRDFLGSMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPEL ++L  SL++V +V V   RI +  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQVIVVPELVEFLEMSLQQVRSVPVKTRRIDISELKIREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI  GDVRVNW   ++    L+TGD+V+V GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIDGGDVRVNWKDTSQASFQLKTGDLVAVRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ V+L +Y+
Sbjct: 242 EIAVTKKDRYRVQLTRYM 259


>gi|443646827|ref|ZP_21129505.1| photosystem II S4 domain protein [Microcystis aeruginosa
           DIANCHI905]
 gi|159028854|emb|CAO90659.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|443335656|gb|ELS50120.1| photosystem II S4 domain protein [Microcystis aeruginosa
           DIANCHI905]
          Length = 259

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/258 (47%), Positives = 178/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERFFQRLTDVSMEK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL AL+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTALKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS+GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISSGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|172036251|ref|YP_001802752.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
 gi|354553046|ref|ZP_08972353.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
 gi|171697705|gb|ACB50686.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
 gi|353554876|gb|EHC24265.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
          Length = 259

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/254 (48%), Positives = 173/254 (68%), Gaps = 4/254 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LLKG+ ++   EE+  I++ A  A    EV+ SDF +PPV  E   A  +L +++ + 
Sbjct: 5   EKLLKGIENR---EEMTRIIDQAEIAIKTWEVVVSDFFSPPVTAEVEKAFNQLTEIEIMV 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +  PE       I +AAL I GNF F P SH DFLG+IL TGI R+K
Sbjct: 62  WGGYPQAERRRIGITRPEIPLEQSQIPLAALDIAGNFLFDPASHRDFLGAILATGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+G Q +VVPEL ++L TSL +V +V V   RI L  L+  PP+TK   T+E
Sbjct: 122 IGDIIVLGERGGQVIVVPELVEFLETSLTQVRSVPVKTQRIELSELKIRPPKTKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+V+ I+ GDVRVNW  +T+    + +GD+++V GKGR++IG
Sbjct: 182 ASMRLDAIASAGFGMSRSKMVDAINKGDVRVNWKEITQASHNVESGDLIAVRGKGRLEIG 241

Query: 305 EINSTRKGKFAVEL 318
           E+  T+K ++ ++L
Sbjct: 242 EVAITKKQRYRIQL 255


>gi|428203950|ref|YP_007082539.1| photosystem II S4 domain-containing protein [Pleurocapsa sp. PCC
           7327]
 gi|427981382|gb|AFY78982.1| photosystem II S4 domain protein [Pleurocapsa sp. PCC 7327]
          Length = 259

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 180/258 (69%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  I++ A +A    EV  +DFL+PPVL E+     +L +++ +A
Sbjct: 5   EELLKGVENR---EEIARIVDKAEQALRTWEVALTDFLSPPVLAEAQQIFGRLTEIEYIA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +   +       I + AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62  WGGYPQAERQRIGMARSDIPLDLSQIQITALDIAGNFLFDPANHRDFLGAILGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ LVVPE+A++L TSL +V +V V   RI L  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQVLVVPEIAEFLETSLVQVRSVPVKTQRIDLSELKVCPPQKKEITTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ + I+ G+VRVNW  VT+   T++ GD++SV GKGR+++ 
Sbjct: 182 ASMRLDAIASAGFGMSRSKMADAIAAGEVRVNWKEVTQASYTVKMGDLISVRGKGRLQVN 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E++ T+K ++ V+L +++
Sbjct: 242 EVDLTKKQRYRVQLTRFI 259


>gi|425448148|ref|ZP_18828127.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
 gi|389731129|emb|CCI04764.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
          Length = 259

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/260 (47%), Positives = 177/260 (68%), Gaps = 8/260 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMEK 61

Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GGYPQAER RL +     P A+T  P  ++AL I GNF F   +H DFLG++LGTGI R
Sbjct: 62  WGGYPQAERQRLGIARVDLPLAVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EK+GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINT 179

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR++
Sbjct: 180 VEASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLE 239

Query: 303 IGEINSTRKGKFAVELIQYL 322
           +GE+  T+K ++ V L +++
Sbjct: 240 VGEVTVTKKERYRVHLTRFI 259


>gi|126654802|ref|ZP_01726336.1| RNA-binding S4 [Cyanothece sp. CCY0110]
 gi|126623537|gb|EAZ94241.1| RNA-binding S4 [Cyanothece sp. CCY0110]
          Length = 259

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 174/257 (67%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LLKG+ ++   EE+  I++ A  A    EV+ SDF +PPV+ E   A  +L +V+ + 
Sbjct: 5   ETLLKGIENR---EEMTRIIDQAEMAIKTWEVVVSDFFSPPVVAEVENAFSQLTEVEIMV 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +  PE       I +AAL I GNF F P SH DFLG+IL TGI R+K
Sbjct: 62  WGGYPQAERRRIGITRPEIPLEQSQIPLAALDIAGNFLFDPASHRDFLGAILATGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+G Q ++VPEL ++L TSL +V +V V    I L  L+  PP+TK   T+E
Sbjct: 122 IGDIIVLGERGGQVIIVPELVEFLETSLTQVRSVPVKTQSIELSELKIRPPKTKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+V+ I+ GDVRVNW  +T+    + +GD+++V GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGMSRSKMVDAINKGDVRVNWKEITQASHNIESGDLIAVRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQY 321
           E+  T+K ++ + L ++
Sbjct: 242 EVGITKKQRYRIHLTRF 258


>gi|428219626|ref|YP_007104091.1| photosystem II S4 domain-containing protein [Pseudanabaena sp. PCC
           7367]
 gi|427991408|gb|AFY71663.1| photosystem II S4 domain protein [Pseudanabaena sp. PCC 7367]
          Length = 258

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/257 (47%), Positives = 179/257 (69%), Gaps = 4/257 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL G+ +K   E +  + +   RA +  EV+ SDFL+PP L E+   L+KL ++ AV+ 
Sbjct: 5   DLLDGLENK---EILSRLFDQGDRALNTWEVVCSDFLSPPELAEAHEVLKKLTEIHAVSW 61

Query: 127 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAERCRL++   +   +  ++ +AA+ + GNF F   +H DFLG+ LG+GI R+K+
Sbjct: 62  GGYPQAERCRLALARVDLPLAPENVELAAIDVAGNFLFDAATHRDFLGACLGSGIERQKV 121

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE+GAQ +VVPEL +YL  +L +V  V+V    I L  L+  PPRTK   T+EA
Sbjct: 122 GDIIVIGERGAQIIVVPELVEYLTMNLTQVRTVTVKTQPIELSELKIRPPRTKEMTTVEA 181

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+V+LI+  +VRVNW +V ++   L+ GD+V+V G+GR+ IG+
Sbjct: 182 SLRLDAIASAGFGMSRSKMVDLIAGDEVRVNWKSVKQSSHQLQAGDLVAVRGRGRLSIGD 241

Query: 306 INSTRKGKFAVELIQYL 322
           I  T+K ++ V+L +YL
Sbjct: 242 IMITKKNRYRVQLTRYL 258


>gi|427730945|ref|YP_007077182.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7524]
 gi|427366864|gb|AFY49585.1| photosystem II S4 domain protein [Nostoc sp. PCC 7524]
          Length = 259

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 179/258 (69%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++I     +++ A +A    EV+ +DFL+PP L E      +L +++ VA
Sbjct: 5   EELLKGVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTELQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E       + +  L I GNF F P +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRVAIARSELPLDQSQVNLVLLEIAGNFLFDPATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPELA++L  +L++V +V V   +I L  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQQIDLSELKVREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI  GDVRVNW  VT+  + +++GD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIDAGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +Y+
Sbjct: 242 EVAVTKKERYRVQLTRYM 259


>gi|425460161|ref|ZP_18839643.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
 gi|389827156|emb|CCI21733.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
          Length = 259

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS+GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISSGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|440682854|ref|YP_007157649.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
 gi|428679973|gb|AFZ58739.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
          Length = 259

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK V ++++I     +++ A +A    EV+++DFL+PP L E      +L +V  VA
Sbjct: 5   EELLKSVENRDSI---ARVIDQAEQAIKTWEVVYTDFLSPPELAEIQRVFSRLTEVHLVA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E  L      +AAL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRIAIARSELPLDQSQVAIAALEIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPEL ++L  SL++V +V V   RI +  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQVIVVPELTEFLEMSLQQVRSVPVKTQRIDINELKIREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI + DVRVNW  VT+    L++GD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIDSNDVRVNWKEVTQASFQLKSGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ ++L +Y+
Sbjct: 242 EIAVTKKDRYRMQLTRYM 259


>gi|425434483|ref|ZP_18814952.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
 gi|389676027|emb|CCH94899.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
          Length = 259

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|425469652|ref|ZP_18848571.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
 gi|389880482|emb|CCI38776.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
          Length = 259

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   ++ DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLAETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|425457020|ref|ZP_18836726.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
 gi|389801734|emb|CCI19139.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
          Length = 259

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMEK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|414078898|ref|YP_006998216.1| photosystem II S4 domain-containing protein [Anabaena sp. 90]
 gi|413972314|gb|AFW96403.1| photosystem II S4 domain protein [Anabaena sp. 90]
          Length = 259

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 178/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV +++    V  +++ A +A    EV+ +DFL+PP L E      +L +V +VA
Sbjct: 5   EELLKGVENRDT---VARVIDQADQAIKTWEVVFTDFLSPPELAEIQRVFSRLTEVHSVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   +      ++ + AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLAIARADLPLDQSEVAIVALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GD+I+ GE+GAQ +VVPEL ++L  SL++V +V V   RI +  L+   P+ K   T+E
Sbjct: 122 TGDVIVLGERGAQVIVVPELVEFLEMSLQQVRSVPVKTRRIEINELKIREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI + DVRVNW  VT+  + ++TGD++++ GKGR+++G
Sbjct: 182 ASLRLDAVASAGFGMSRSKMVDLIDSNDVRVNWKEVTQASSHVKTGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ V+L +Y+
Sbjct: 242 EIAVTKKDRYRVQLTRYM 259


>gi|427723367|ref|YP_007070644.1| photosystem II S4 domain-containing protein [Leptolyngbya sp. PCC
           7376]
 gi|427355087|gb|AFY37810.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7376]
          Length = 260

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 180/258 (69%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           DDLLKG  ++   EE+  IL+ A +A    +++ +DFL+PPVL E+   L +L +   + 
Sbjct: 6   DDLLKGAENR---EELSRILDQADQAFRTWDIVQTDFLSPPVLYEATAILGRLTEFSFIK 62

Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E  L ++   +AA+ I+GNF F   +H DFLGS+LGTG+ REK
Sbjct: 63  GGGYPQAERQRLAIARNEIPLEAEHIEIAAIDISGNFLFDTATHRDFLGSLLGTGLVREK 122

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI++ G++GAQ LV+PEL  +L TSL +V +V V    IP+  L+  PP+ K   T+E
Sbjct: 123 VGDILVLGDRGAQALVIPELVSFLETSLVQVRSVPVKTRPIPIEELKVRPPKKKELTTVE 182

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAG  +SRSK+ + IS G+V+VNW T+T+    ++ GD++S+ GKGR+++G
Sbjct: 183 ASLRLDAIASAGLGMSRSKMADAISKGNVKVNWKTITQTSYNVKDGDLISLRGKGRVEVG 242

Query: 305 EINSTRKGKFAVELIQYL 322
           E+N T+K ++ V+L +++
Sbjct: 243 EVNMTKKERYRVQLTRFV 260


>gi|422301480|ref|ZP_16388848.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
 gi|389789624|emb|CCI14403.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
          Length = 259

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   ++ DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGISRVDLPLAETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|425450199|ref|ZP_18830031.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
 gi|389769055|emb|CCI05983.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
          Length = 259

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLRQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|298493122|ref|YP_003723299.1| photosystem II S4 domain-containing protein ['Nostoc azollae' 0708]
 gi|298235040|gb|ADI66176.1| photosystem II S4 domain protein ['Nostoc azollae' 0708]
          Length = 259

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 176/257 (68%), Gaps = 4/257 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL+GV ++++I     +++ A +A    EV+ +DFL+PP L E      +L DV  VA 
Sbjct: 6   ELLRGVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTDVHLVAW 62

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER R+++   E  L      + AL I GNF F   +H DFLG+ILGTGI REK 
Sbjct: 63  GGYPQAERQRVTIARSELPLDQSQVAITALEIVGNFLFDTATHRDFLGAILGTGIVREKT 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI++ GE+GAQ +VVPEL ++L  SL++V +V V    I +  L+   P+ K   T+EA
Sbjct: 123 GDIMVLGERGAQVIVVPELTEFLEMSLKQVRSVPVKTQPIDINELKIREPKKKELTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+V+LI +GDVRVNW  +T+  + L+TGD++++ GKGR+++GE
Sbjct: 183 SLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEITQASSQLKTGDLIAIPGKGRLEVGE 242

Query: 306 INSTRKGKFAVELIQYL 322
           I  T+K ++ ++L +Y+
Sbjct: 243 ITVTKKDRYRMQLTRYM 259


>gi|119513374|ref|ZP_01632408.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
 gi|119461983|gb|EAW42986.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
          Length = 259

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 121/259 (46%), Positives = 178/259 (68%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++   V  +++ A +A    EV+ +DFL+PP L E      +L DV+ VA
Sbjct: 5   EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEINRVFSRLTDVQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GGYPQAER R+++   E L  +P  V   AL   GNF F   SH DFLG++LGTGI RE
Sbjct: 62  WGGYPQAERQRMAIARSE-LPLEPSQVDLVALEFAGNFLFDTASHRDFLGAMLGTGIVRE 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GDI++ GE+GAQ +V PELA++L  SL++V +V V   RI +  L+   P+ K   T+
Sbjct: 121 KTGDILVLGERGAQAIVAPELAEFLEMSLQQVRSVPVKTQRIDINELKVREPKKKELTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+VN I +GDVRVNW  VT+  + +++GD++++  KGR+++
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVNYIESGDVRVNWKDVTQASSQVKSGDLIAIRSKGRLEV 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           GEI  T+K ++ V+L +Y+
Sbjct: 241 GEIAVTKKERYRVQLTRYM 259


>gi|440752557|ref|ZP_20931760.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
 gi|440177050|gb|ELP56323.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
          Length = 259

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLLQVRSVPVKTSLIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|300866534|ref|ZP_07111224.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
 gi|300335491|emb|CBN56384.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
          Length = 259

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKG+ ++   E V   ++ A +A    E+  +DFL+PP L E+     +L +V+ +A
Sbjct: 5   EELLKGIENR---ECVARAIDQAEQALKTWEISLTDFLSPPELAETQKVFSRLTEVQLIA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E    +  + VAAL I GNF F   SH DFLGSILG+GI REK
Sbjct: 62  WGGYPQAERQRLAIARSELPLDNSSVSVAALEIAGNFLFDTASHRDFLGSILGSGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+G+Q +VVPEL +YL   L++V +V V   RI L  L+ + P+ K   T+E
Sbjct: 122 TGDIIVLGERGSQAIVVPELVEYLEMHLKQVRSVPVQIQRIELSELKIKEPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+V+LI  GDVRVNW  + ++   +++GD+V++ GKGR++IG
Sbjct: 182 ASMRLDAIASAGFGMSRSKMVDLIEGGDVRVNWKDIAQSSHIIKSGDLVAIRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ ++L +Y+
Sbjct: 242 EVMVTKKDRYRIQLTRYI 259


>gi|218247630|ref|YP_002373001.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
           8801]
 gi|257061035|ref|YP_003138923.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
           8802]
 gi|218168108|gb|ACK66845.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8801]
 gi|256591201|gb|ACV02088.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8802]
          Length = 259

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 175/257 (68%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LLKG+ ++   EE+  I+++A  A    EV  SDFL+PPV+ E     + L +++ + 
Sbjct: 5   EQLLKGIENR---EEIARIIDLAEIALKTWEVAISDFLSPPVIAEVQRLFKGLTELEMLP 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +   E     P I +AAL I GNF F P +H DFLG+ILGTGI REK
Sbjct: 62  WGGYPQAERQRVGIVRAEIPLETPQITLAALDIAGNFLFDPATHRDFLGAILGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+GAQ +VVPE+ ++L TSL +V +V V    I L  L+  PP+TK   T+E
Sbjct: 122 IGDIIVLGERGAQVIVVPEMVNFLETSLVQVRSVPVKVQLIDLSELKIRPPKTKEMNTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+   IS GDVRVNW  +T+    +++GD+++  GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGISRSKMAEAISAGDVRVNWKEITQASYNVQSGDLITFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQY 321
           E+  T+K ++ ++L ++
Sbjct: 242 EVAVTKKERYRIQLTRF 258


>gi|307152717|ref|YP_003888101.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
           7822]
 gi|306982945|gb|ADN14826.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7822]
          Length = 259

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 175/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  I++ A  A    EV  +DFL+PPVL E     ++L +V  + 
Sbjct: 5   EELLKGVENR---EEIARIIDKAETAMRTWEVTLTDFLSPPVLAEVQRIFQRLTEVDLIP 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   E       + VAA+ I GNF F   +H DFLG++LGTG+ REK
Sbjct: 62  WGGYPQAERQRLGISRSEVPFDLSGVAVAAVDIAGNFLFDAANHRDFLGAMLGTGLVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPEL ++L TSL +V +V V   RI L  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELVEFLETSLVQVRSVPVKTERIELTDLKVRPPQKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+   IS+GDVRVNW  +T+    + +GD++S+ GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGMSRSKMAEAISSGDVRVNWKEITQASHNVSSGDLISMRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +Y+
Sbjct: 242 EVAVTKKERYRVQLTRYI 259


>gi|75907235|ref|YP_321531.1| RNA-binding protein S4 [Anabaena variabilis ATCC 29413]
 gi|75700960|gb|ABA20636.1| RNA-binding S4 [Anabaena variabilis ATCC 29413]
          Length = 259

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 175/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++   V  +++ A +A    EV+ +DF +PP L E      +L DV+ VA
Sbjct: 5   EELLKGVENRDS---VARVIDQAEQAIKTWEVVVTDFFSPPELAEIQRVFSRLTDVQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E       + +  L I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLAIARAELPLDQSQVSLVVLEIAGNFLFDSATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPELA++L   L +V +V V    I L  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELAELKVREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI +GDVRVNW  VT+  + +++GD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ V+L +Y+
Sbjct: 242 EIAVTKKERYRVQLTRYM 259


>gi|17230382|ref|NP_486930.1| hypothetical protein alr2890 [Nostoc sp. PCC 7120]
 gi|17131984|dbj|BAB74589.1| alr2890 [Nostoc sp. PCC 7120]
          Length = 259

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/259 (47%), Positives = 177/259 (68%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++   V  +++ A +A    EV+ +DFL+PP L E      +L DV+ VA
Sbjct: 5   EELLKGVENRDS---VARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GGYPQAER RL++   E L  D   V+   L I GNF F   +H DFLG++LGTGI RE
Sbjct: 62  WGGYPQAERQRLAIARAE-LPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVRE 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GDII+ GE+GAQ +VVPELA++L   L +V +V V    I L  L+   P+ K   T+
Sbjct: 121 KTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+V+ I +GDVRVNW  VT+  + +++GD++++ GKGR+++
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           GEI  T+K ++ V+L +Y+
Sbjct: 241 GEIAVTKKERYRVQLTRYM 259


>gi|354567372|ref|ZP_08986541.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
 gi|353542644|gb|EHC12105.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
          Length = 259

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKG+ +++    V  +++ A +A    EV+ +DFL+PP L E      +L +V+ +A
Sbjct: 5   EELLKGIENRDT---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E  L      +AAL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRMAIARSELPLDLSQVAIAALDIAGNFLFDTATHRDFLGAMLGTGIIREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPEL ++L  +L++V +V V   RI L  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGEQGAQAIVVPELVEFLEMNLKQVRSVPVKTQRIDLSELKVREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V LI  GDVRVNW  +T+  + ++TGD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVELIDGGDVRVNWKEITQANSQVKTGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           +I  T+K ++ V+L +Y+
Sbjct: 242 DIAVTKKDRYRVQLTRYM 259


>gi|166365176|ref|YP_001657449.1| RNA-binding protein S4 [Microcystis aeruginosa NIES-843]
 gi|425465358|ref|ZP_18844667.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
 gi|166087549|dbj|BAG02257.1| RNA-binding S4 [Microcystis aeruginosa NIES-843]
 gi|389832398|emb|CCI23996.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
          Length = 259

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   +   +  DI ++AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLSANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +++
Sbjct: 242 EVTVTKKERYRVHLTRFI 259


>gi|390441638|ref|ZP_10229680.1| RNA-binding S4 [Microcystis sp. T1-4]
 gi|389835056|emb|CCI33806.1| RNA-binding S4 [Microcystis sp. T1-4]
          Length = 259

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/260 (46%), Positives = 177/260 (68%), Gaps = 8/260 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   E++  +++ A +A    EV  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EDIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GGYPQAER RL +     P A+T  P  ++AL I GNF F   +H DFLG++LGTGI R
Sbjct: 62  WGGYPQAERQRLGIARVDLPLAVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EK+GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLSANLLQVRSVPVKTSPIPLTELKVRPPQKKEINT 179

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR++
Sbjct: 180 VEASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLE 239

Query: 303 IGEINSTRKGKFAVELIQYL 322
           +GE+  T+K ++ V L +++
Sbjct: 240 VGEVTVTKKERYRVHLTRFI 259


>gi|425440202|ref|ZP_18820510.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
 gi|389719422|emb|CCH96747.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
          Length = 259

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/260 (46%), Positives = 176/260 (67%), Gaps = 8/260 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   EE+  +++ A +A    E+  +DFL+P VL E     ++L DV    
Sbjct: 5   EELLKGVENR---EEIAKVIDKAEQAIKTWEMTVTDFLSPAVLAEVERVFQRLTDVSMQK 61

Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GGYPQAER RL +     P  +T  P  ++AL I GNF F   +H DFLG++LGTGI R
Sbjct: 62  WGGYPQAERQRLGIARVDLPWTVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EK+GDII+ GE+GAQ +VVPELAD+L  +L +V +V V  + IPL  L+  PP+ K   T
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINT 179

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EASLR+DA+ASAGF +SRSK+   IS GDVRVNW  ++++   ++TGD++S  GKGR++
Sbjct: 180 VEASLRLDAIASAGFGISRSKMAEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLE 239

Query: 303 IGEINSTRKGKFAVELIQYL 322
           +GE+  T+K ++ V L +++
Sbjct: 240 VGEVTVTKKERYRVHLTRFI 259


>gi|434405253|ref|YP_007148138.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
           7417]
 gi|428259508|gb|AFZ25458.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
           7417]
          Length = 259

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/259 (46%), Positives = 175/259 (67%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV +++    V  +++ A +A    EV+ +DFL+PP L E      +L DV+ VA
Sbjct: 5   EELLKGVENRDT---VARVIDQAEQAIKTWEVVVTDFLSPPELAEVQRVFSRLTDVQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GGYPQAER R+++   E L  D   VA   L I GNF F   +H DFLG++LGTGI RE
Sbjct: 62  WGGYPQAERQRIAIARSE-LPLDQSQVALVVLEIAGNFLFDTATHRDFLGAMLGTGIIRE 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GD+I+ GE+GAQ +V PELA++L  SL++V +V V   RI    L+   P+ K   T+
Sbjct: 121 KTGDVIVLGERGAQTIVAPELAEFLEMSLQQVRSVPVKTRRIDFSELKVREPKKKELTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+V+ I +GDVRVNW  VT+    +++GD++++  KGR+++
Sbjct: 181 EASLRLDAIASAGFAMSRSKMVDFIDSGDVRVNWKEVTQPSAQVKSGDLIAIRSKGRLEV 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           GEI  T+K ++ V+L +Y+
Sbjct: 241 GEIAVTKKDRYRVQLTRYM 259


>gi|81300312|ref|YP_400520.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
 gi|81169193|gb|ABB57533.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
          Length = 259

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/257 (47%), Positives = 174/257 (67%), Gaps = 4/257 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL G  +++ +     ++++A ++    E   SDFL+PP L E+   L +L +++ +  
Sbjct: 6   DLLAGADNRDCL---ARLIDLAEQSIRTWEPAISDFLSPPELAEAQERLGRLTELQLLPW 62

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER RL++   E  L  D   +AA+ I GNF F P SH DFLGS+LGTG+ REK+
Sbjct: 63  GGYPQAERQRLAIARSEMPLDVDQIAIAAVEIAGNFLFDPASHRDFLGSLLGTGLVREKV 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI++ G++GAQ LV+PEL ++L   L +V +V V    IPL  L    PR K   T+EA
Sbjct: 123 GDILVLGDRGAQALVMPELVEFLGLQLTQVRSVPVKVREIPLAELRIPAPRIKQLTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF LSRSK+V+LI+ G+VRVNW   T+  T L+TGD+V+V GKGR+ IG+
Sbjct: 183 SLRLDAIASAGFGLSRSKMVDLINRGEVRVNWKAATQPSTQLKTGDLVAVRGKGRLAIGD 242

Query: 306 INSTRKGKFAVELIQYL 322
           +  T+K ++ +EL +Y+
Sbjct: 243 VQVTKKERYRLELTRYV 259


>gi|423067872|ref|ZP_17056662.1| photosystem II S4 domain protein [Arthrospira platensis C1]
 gi|406710615|gb|EKD05822.1| photosystem II S4 domain protein [Arthrospira platensis C1]
          Length = 287

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 176/256 (68%), Gaps = 4/256 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL G+ +++ I     I+++A +A    E+  ++FL+PP + E+     +L +++A++ 
Sbjct: 34  ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 90

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER R+++   E  L S    +AA+ I+GNF F   +H DFLGS+LGTGI REK 
Sbjct: 91  GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 150

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GD+I+ GE+GAQ +V+PEL +YL  +L +V  V V    I L  L+   P+ K+  T+EA
Sbjct: 151 GDLIVLGERGAQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 210

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+VNLI  GDVRVNW  V +    ++TGD++++ GKGR++IGE
Sbjct: 211 SLRLDAIASAGFGMSRSKMVNLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEIGE 270

Query: 306 INSTRKGKFAVELIQY 321
           ++ T+K ++ VEL +Y
Sbjct: 271 VSVTKKQRYRVELTRY 286


>gi|282897968|ref|ZP_06305963.1| RNA-binding S4 [Raphidiopsis brookii D9]
 gi|281197112|gb|EFA72013.1| RNA-binding S4 [Raphidiopsis brookii D9]
          Length = 259

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 175/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV +++ I    H+++ A +A    EV+ +DFL+PP L E      +L +V  VA
Sbjct: 5   EELLKGVENRDVI---AHVIDQAEQAIKTWEVVITDFLSPPELAEIERVFNRLTEVHLVA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E  L      V  L I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRVAIIRSEMPLDVSQVAVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPELA++L  +L++V +V V    I    L+   P+ K   T+E
Sbjct: 122 TGDIIILGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQVIDPSELKIREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI +GDVRVNW  +T++   L+ GD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEITQSSYQLKMGDLIAIRGKGRLQVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ ++L +Y+
Sbjct: 242 EIAVTKKDRYRIQLTRYM 259


>gi|254423526|ref|ZP_05037244.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
 gi|196191015|gb|EDX85979.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
          Length = 259

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 123/257 (47%), Positives = 174/257 (67%), Gaps = 4/257 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLLK   +K A+     I++ A +A    E + +DFL+PP + E+     +L+DV A+A 
Sbjct: 6   DLLKHSENKEAL---SRIIDQAEQAIRTWEPVATDFLSPPEVFEAQATFGRLSDVHAIAN 62

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER RL +   E  L   P  +AA+SI GNF F   +H DFLGS+LGTGI R K+
Sbjct: 63  GGYPQAERQRLIIARAEIPLDETPVPLAAISIAGNFLFDTATHRDFLGSLLGTGIVRAKV 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE+GAQ +VVPEL ++L TSL +V +VSV    I +  L    P+ K   T+EA
Sbjct: 123 GDIIVLGERGAQAVVVPELVEFLTTSLTQVRSVSVKTRPIEMSELRVREPKKKEMTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           S+R+DALASAGF +SRSK+ ++I+ GDVRVNW  VT+   TL+ GD+V++ GKGR+++GE
Sbjct: 183 SMRLDALASAGFGMSRSKMADMITGGDVRVNWKPVTQASQTLQPGDLVAIRGKGRLEVGE 242

Query: 306 INSTRKGKFAVELIQYL 322
           +  T+K ++ V+L + +
Sbjct: 243 MAVTKKQRYRVQLTRLV 259


>gi|209525233|ref|ZP_03273776.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
 gi|209494418|gb|EDZ94730.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
          Length = 259

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 176/256 (68%), Gaps = 4/256 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL G+ +++ I     I+++A +A    E+  ++FL+PP + E+     +L +++A++ 
Sbjct: 6   ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 62

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER R+++   E  L S    +AA+ I+GNF F   +H DFLGS+LGTGI REK 
Sbjct: 63  GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GD+I+ GE+GAQ +V+PEL +YL  +L +V  V V    I L  L+   P+ K+  T+EA
Sbjct: 123 GDLIVLGERGAQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+VNLI  GDVRVNW  V +    ++TGD++++ GKGR++IGE
Sbjct: 183 SLRLDAIASAGFGMSRSKMVNLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEIGE 242

Query: 306 INSTRKGKFAVELIQY 321
           ++ T+K ++ VEL +Y
Sbjct: 243 VSVTKKQRYRVELTRY 258


>gi|170079381|ref|YP_001736019.1| S4 domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169887050|gb|ACB00764.1| S4 domain protein [Synechococcus sp. PCC 7002]
          Length = 253

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/256 (45%), Positives = 177/256 (69%), Gaps = 4/256 (1%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           +LKGV ++    E+  +L+ A +A    E++ +DFL+PPVL E++    KL +V+ V  G
Sbjct: 1   MLKGVENR---AELSRLLDQADQAIRTWEIVQTDFLSPPVLYEALEIFGKLTEVQVVHGG 57

Query: 128 GYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GYPQAER RL++   E  L +    +AAL I GNF F   +H DFLGS+LGTG+ R+K+G
Sbjct: 58  GYPQAERQRLAIAREEIPLDASHVEIAALDIAGNFLFDTATHRDFLGSLLGTGLVRDKVG 117

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
           DI++ G++GAQ LV+PEL  +L TSL +V +V V    IPL  L+  PP+ K   T+EAS
Sbjct: 118 DILVLGDRGAQTLVIPELVSFLETSLVQVRSVPVKTRSIPLEELKVRPPKKKELTTVEAS 177

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           LR+DA+ SAG  +SR+K+   I++G+VRVNW T+T++   ++ GD++S+ GKGR+++GEI
Sbjct: 178 LRLDAIGSAGLGMSRTKMAEAIASGNVRVNWKTITQSSYNVKAGDLISLRGKGRVEVGEI 237

Query: 307 NSTRKGKFAVELIQYL 322
           N T+K ++ V L +++
Sbjct: 238 NMTKKERYRVNLTRFV 253


>gi|376002425|ref|ZP_09780258.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
 gi|375329165|emb|CCE16011.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
          Length = 259

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 176/256 (68%), Gaps = 4/256 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL G+ +++ I     I+++A +A    E+  ++FL+PP + E+     +L +++A++ 
Sbjct: 6   ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 62

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER R+++   E  L S    +AA+ I+GNF F   +H DFLGS+LGTGI REK 
Sbjct: 63  GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GD+I+ GE+GAQ +V+PEL +YL  +L +V  V V    I L  L+   P+ K+  T+EA
Sbjct: 123 GDLIVLGERGAQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+VNLI  GDVRVNW  V +    ++TGD++++ GKGR++IGE
Sbjct: 183 SLRLDAIASAGFGMSRSKMVNLIDGGDVRVNWKEVKQASIAVKTGDLIAIRGKGRLEIGE 242

Query: 306 INSTRKGKFAVELIQY 321
           ++ T+K ++ VEL +Y
Sbjct: 243 VSVTKKQRYRVELTRY 258


>gi|427736647|ref|YP_007056191.1| photosystem II S4 domain-containing protein [Rivularia sp. PCC
           7116]
 gi|427371688|gb|AFY55644.1| photosystem II S4 domain protein [Rivularia sp. PCC 7116]
          Length = 259

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK V +++    V  +++ A +A    EV+ +DFL+PP L E+     KL +V+ +A
Sbjct: 5   EELLKNVENRDT---VARVIDCAEQAIRTWEVVFTDFLSPPELAEAQQGFSKLTEVELLA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E    +  + + AL+I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERKRIAIARNELPLDESQVELVALNIAGNFLFDTATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPELAD+L TSL +V +V V   RI    L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQVIVVPELADFLETSLTQVRSVPVKTQRIDFGELKIREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+ I+ GDVRVNW  + +    ++TGD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDFINAGDVRVNWKEIKQASHQVKTGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ ++L +++
Sbjct: 242 EIAVTKKERYRMQLTKFV 259


>gi|186683162|ref|YP_001866358.1| RNA-binding S4 domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186465614|gb|ACC81415.1| RNA-binding S4 domain protein [Nostoc punctiforme PCC 73102]
          Length = 259

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 174/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++   V  +++ A +A    EV+ +DFL+PP L E      +L +V+ VA
Sbjct: 5   EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E       + + A+ I GNF F   SH DFLG++LGTGI REK
Sbjct: 62  WGGYPQAERQRIAIARSELPLDQSQVSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GD+I+ GE+GAQ +V PEL ++L  SL++V +V V   RI +  L    P+ K   T+E
Sbjct: 122 TGDVIVLGERGAQAIVAPELVEFLEMSLKQVRSVPVKTQRIEITELRVREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+ I  GDVRVNW  VT+  + +++GD++++  KGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDFIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ V+L +Y+
Sbjct: 242 EIAVTKKDRYRVQLTRYM 259


>gi|282899112|ref|ZP_06307093.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
 gi|281196028|gb|EFA70944.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
          Length = 259

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 175/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV +++ I    H+++ A +A    EV+ +DFL+PP L E      +L +V  VA
Sbjct: 5   EELLKGVENRDII---AHVIDQAEQAIKTWEVVITDFLSPPELAEIERVFSRLMEVHLVA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGY QAER R+++   E  L     +V  L I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYLQAERQRVAIARSEMPLDISQVVVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVPELA++L  +L++V +V V    I    L+   P+ K   T+E
Sbjct: 122 TGDIIILGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQVIDSSELKIREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LI +GDVRVNW  +T++   L+ GD++++ GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEITQSSYQLKMGDLIAIRGKGRLQVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ ++L +Y+
Sbjct: 242 EIAVTKKDRYRIQLTRYM 259


>gi|428305393|ref|YP_007142218.1| photosystem II S4 domain-containing protein [Crinalium epipsammum
           PCC 9333]
 gi|428246928|gb|AFZ12708.1| photosystem II S4 domain protein [Crinalium epipsammum PCC 9333]
          Length = 259

 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 120/258 (46%), Positives = 174/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   E    +++ A +A    EV+ +DFL+PP L E      +L +V  VA
Sbjct: 5   EELLKGVENR---ETAARVIDQAEQALKTWEVVVTDFLSPPELVEMQQMFGRLTEVHLVA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E     P + +AA+SI GNF F   +H DFLGS+LG GI REK
Sbjct: 62  GGGYPQAERQRLAIARSELPLELPQVPLAAVSIAGNFLFDSATHRDFLGSMLGCGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +++PE+ +YL T L +V +V V+  RI L  L+   P+ K   T+E
Sbjct: 122 TGDIIVLGEQGAQAIIIPEMVEYLETHLTQVRSVPVNTRRIELSELKIREPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V  IS GDVRVNW  +T+    ++TGD+++  GKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMVEFISAGDVRVNWKEITQPSQLVKTGDLIATRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ V+L +++
Sbjct: 242 EIMVTKKERYRVQLTRFI 259


>gi|56752497|ref|YP_173198.1| hypothetical protein syc2488_d [Synechococcus elongatus PCC 6301]
 gi|56687456|dbj|BAD80678.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 259

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 121/257 (47%), Positives = 173/257 (67%), Gaps = 4/257 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DL  G  +++ +     ++++A ++    E   SDFL+PP L E+   L +L +++ +  
Sbjct: 6   DLPAGADNRDCL---ARLIDLAEQSIRTWEPAISDFLSPPELAEAQERLGRLTELQLLPW 62

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER RL++   E  L  D   +AA+ I GNF F P SH DFLGS+LGTG+ REK+
Sbjct: 63  GGYPQAERQRLAIARSEMPLDVDQIAIAAVEIAGNFLFDPASHRDFLGSLLGTGLVREKV 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI++ G++GAQ LV+PEL ++L   L +V +V V    IPL  L    PR K   T+EA
Sbjct: 123 GDILVLGDRGAQALVMPELVEFLGLQLTQVRSVPVKVREIPLAELRIPAPRIKQLTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF LSRSK+V+LIS G+VRVNW   T+  T L+TGD+V+V GKGR+ IG+
Sbjct: 183 SLRLDAIASAGFGLSRSKMVDLISRGEVRVNWKAATQPSTQLKTGDLVAVRGKGRLAIGD 242

Query: 306 INSTRKGKFAVELIQYL 322
           +  T+K ++ +EL +Y+
Sbjct: 243 VQVTKKERYRLELTRYV 259


>gi|427707479|ref|YP_007049856.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7107]
 gi|427359984|gb|AFY42706.1| photosystem II S4 domain protein [Nostoc sp. PCC 7107]
          Length = 259

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 179/259 (69%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++++   V  +++ A +A    EV+ +DFL+PP L E      +L +V+ +A
Sbjct: 5   EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRIFNRLTEVQLLA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GGYPQAER R+++   E L  D   VA   L + GNF F   +H DFLG++LGTGI RE
Sbjct: 62  WGGYPQAERQRMAIARGE-LPLDESQVALVVLEVAGNFLFDTATHRDFLGAMLGTGIVRE 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GD+I+ GE+GAQ +VVPE+A++L  +L++V +V V   RI +  L+   P+ K   T+
Sbjct: 121 KTGDVIVLGERGAQVIVVPEIAEFLEMNLQQVRSVPVKTQRIDISELKIREPKKKELTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+V+LI  GDVRVNW  +T+    +++GD+V++ GKGR+++
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDLIDAGDVRVNWKDITQASFQVKSGDLVAIRGKGRLEV 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           GE+  T+K ++ V+L +Y+
Sbjct: 241 GEVAITKKDRYRVQLTRYM 259


>gi|434387463|ref|YP_007098074.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
 gi|428018453|gb|AFY94547.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
          Length = 259

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/259 (47%), Positives = 177/259 (68%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK V ++   E V   +++A RA    EV+ +DFL+PP + E      +L+DV+ +A
Sbjct: 5   EELLKRVENR---EVVARAIDLADRAIKNWEVVETDFLSPPEIAEIKSVFSRLSDVEIIA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GGYPQAER RL +   E L  +P  V  AA+ I GNF F P +H DFLG++LG GI R+
Sbjct: 62  TGGYPQAERQRLGICRAE-LPFEPSQVPLAAIQIAGNFLFDPPTHRDFLGAMLGCGIVRD 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GDII+ GE+GAQ +V PEL ++L T+L +V +V V   RI L  L+   P+ K   T+
Sbjct: 121 KTGDIIVLGEQGAQAIVAPELVEFLETNLTQVRSVPVKTQRIDLSELKIREPKKKEMTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+V+LIS+GDVRVNW  + ++   L+ GD+V++ GKGR++I
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDLISSGDVRVNWKEIGQSAHALKAGDLVAIRGKGRLEI 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           GE+  T+K ++ V L +Y+
Sbjct: 241 GEVAITKKERYRVNLTRYM 259


>gi|428224087|ref|YP_007108184.1| photosystem II S4 domain-containing protein [Geitlerinema sp. PCC
           7407]
 gi|427983988|gb|AFY65132.1| photosystem II S4 domain protein [Geitlerinema sp. PCC 7407]
          Length = 259

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 173/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           D+LL+   ++ A      +++ A RA    EV+ +DFL+PP + ++     +L +V+ + 
Sbjct: 5   DELLQKAQNREA---AAQLIDAAERAIKTWEVVLTDFLSPPEMADAQQMFGRLTEVQLMG 61

Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++  PE  L +    VA L I GNF F P +H DFLG++LGTGI R+K
Sbjct: 62  WGGYPQAERQRLAIARPEIPLEASQVEVAVLEIAGNFLFDPATHRDFLGAVLGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI++ G++GAQ LVVPE+ D+L  SL +V +V V    I L  L+   P+ K   T+E
Sbjct: 122 VGDIVVLGDRGAQALVVPEMVDFLAMSLTQVRSVPVKTQPIDLAELKVREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ +LI+ GDVRVNW  VT+    ++ GD+V+V GKGR++IG
Sbjct: 182 ASMRLDAIASAGFGMSRSKMADLITGGDVRVNWRDVTQASYQVKAGDLVAVRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ ++L + +
Sbjct: 242 EVAVTKKDRYRIQLTRLM 259


>gi|409990192|ref|ZP_11273604.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
 gi|409938945|gb|EKN80197.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
          Length = 259

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 174/256 (67%), Gaps = 4/256 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL G+ +++ I     I+++A +A    E+  ++FL+PP + E+    ++L +V+A + 
Sbjct: 6   ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSW 62

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER R+++   E  L S    +AA+ I+GNF F   +H DFLGS+LGTGI REK 
Sbjct: 63  GGYPQAERQRMAIARSELPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE+G Q +V+PEL +YL  +L +V  V V    I L  L+   P+ K+  T+EA
Sbjct: 123 GDIIVLGERGGQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+V LI  GDVRVNW  V +    ++TGD++++ GKGR++IGE
Sbjct: 183 SLRLDAIASAGFGMSRSKMVTLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEIGE 242

Query: 306 INSTRKGKFAVELIQY 321
           ++ T+K ++ VEL +Y
Sbjct: 243 VSVTKKQRYRVELTRY 258


>gi|291568923|dbj|BAI91195.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 259

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/256 (44%), Positives = 174/256 (67%), Gaps = 4/256 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL G+ +++ I     I+++A +A    E+  ++FL+PP + E+    ++L +V+A + 
Sbjct: 6   ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSW 62

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER R+++   E  L S    +AA+ I+GNF F   +H DFLGS+LGTGI REK 
Sbjct: 63  GGYPQAERQRMAIARSELPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE+G Q +V+PEL +YL  +L +V  V V    I L  L+   P+ K+  T+EA
Sbjct: 123 GDIIVLGERGGQAIVIPELVEYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+V LI  GDVRVNW  V +    ++TGD++++ GKGR+++GE
Sbjct: 183 SLRLDAIASAGFGMSRSKMVTLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEVGE 242

Query: 306 INSTRKGKFAVELIQY 321
           ++ T+K ++ VEL +Y
Sbjct: 243 VSVTKKQRYRVELTRY 258


>gi|119491309|ref|ZP_01623363.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
 gi|119453473|gb|EAW34635.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
          Length = 259

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/257 (44%), Positives = 174/257 (67%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LL  V +++ I     +++ A +A    EV ++DFL+PP L E+     +L +V+ V 
Sbjct: 5   EELLNSVENRDCI---ARVIDQAEQAIKTWEVTYTDFLSPPELAEAQRIFNRLTEVQLVT 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E    D  + V A+ I+GNF F   +H DFLGS+LGTGI REK
Sbjct: 62  GGGYPQAERQRIAIAREELPLDDSSVAVEAIDISGNFLFDTATHRDFLGSMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GA  +VVPEL ++L  +L +V +V V   RI L  L+  PP+ K   T+E
Sbjct: 122 TGDIIVLGERGAHAVVVPELVEFLEMNLTQVRSVPVKTKRIELSELKIRPPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+V+LI  GDVRVNW  +++    +++GD++++ GKGR+++G
Sbjct: 182 ASMRLDAVASAGFGMSRSKMVSLIDGGDVRVNWKDISQASYQVKSGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQY 321
           E+  T+K ++ V+L +Y
Sbjct: 242 EVAVTKKERYRVQLTRY 258


>gi|428215265|ref|YP_007088409.1| photosystem II S4 domain-containing protein [Oscillatoria acuminata
           PCC 6304]
 gi|428003646|gb|AFY84489.1| photosystem II S4 domain protein [Oscillatoria acuminata PCC 6304]
          Length = 259

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/260 (46%), Positives = 177/260 (68%), Gaps = 8/260 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   E++  IL++A RA    EV  +DFL+P  L E+  A  +L +V  VA
Sbjct: 5   EELLKGVENR---EQMARILDLADRALKTWEVAVTDFLSPIELMETQTAFNRLTEVHLVA 61

Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GGYPQAER R+++     P   TS P  +AAL I GNF F   SH DFLGSILGTGI R
Sbjct: 62  FGGYPQAERQRVAIARIDLPLDATSVP--LAALEIAGNFLFDSASHRDFLGSILGTGIVR 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EK+GDII+ GE+GAQ +V P+L ++L  SL +V +V V   RI L  L+   P+ K   T
Sbjct: 120 EKVGDIIVLGERGAQAVVSPDLVEFLEMSLTQVRSVPVKTQRIELGELKIREPKKKELTT 179

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EAS+R+DA+ASAGF +SRSK+ +LI+ GDVRVNW  +++    ++  D++++ GKGR++
Sbjct: 180 VEASMRLDAIASAGFGMSRSKMADLINGGDVRVNWKDISQTSYQVKPNDLIAIRGKGRLE 239

Query: 303 IGEINSTRKGKFAVELIQYL 322
           +G++  T+K ++ ++L +YL
Sbjct: 240 VGDVQVTKKERYRIQLTRYL 259


>gi|16330752|ref|NP_441480.1| hypothetical protein sll1252 [Synechocystis sp. PCC 6803]
 gi|383322494|ref|YP_005383347.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
           substr. GT-I]
 gi|383325663|ref|YP_005386516.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
           substr. PCC-P]
 gi|383491547|ref|YP_005409223.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
           substr. PCC-N]
 gi|384436814|ref|YP_005651538.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
 gi|451814910|ref|YP_007451362.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
 gi|1653245|dbj|BAA18160.1| sll1252 [Synechocystis sp. PCC 6803]
 gi|339273846|dbj|BAK50333.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
 gi|359271813|dbj|BAL29332.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
           substr. GT-I]
 gi|359274983|dbj|BAL32501.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
           substr. PCC-N]
 gi|359278153|dbj|BAL35670.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
           substr. PCC-P]
 gi|407958671|dbj|BAM51911.1| hypothetical protein BEST7613_2980 [Bacillus subtilis BEST7613]
 gi|451780879|gb|AGF51848.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
          Length = 259

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 172/258 (66%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + LLKG  D+ AI     +++ A +A    EV+ SDF  PP++ E     + L ++  + 
Sbjct: 5   EALLKGAPDREAI---ARVIDQAEQALRTWEVVVSDFCAPPLIAEIQTRFDSLTELHFLP 61

Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E  L ++   + AL + GNF F P SH DFLG++LGTG+ REK
Sbjct: 62  WGGYPQAERQRLAIARAEIPLETEQIPLTALDVAGNFLFDPASHRDFLGALLGTGLVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDIIL GE+GAQ +VVPE+A+++   L +V  V V    I L  L+  PP+TK   T+E
Sbjct: 122 VGDIILLGERGAQAIVVPEVAEFISLHLTQVRTVPVKAKAIALEELKIRPPKTKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF LSRSK+ + ++ G+V+VNW  VT++   L+ GD+V+  GKGR++IG
Sbjct: 182 ASLRLDAIASAGFGLSRSKMADAVTQGNVQVNWKPVTQSSYALKAGDLVTYRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ ++L +YL
Sbjct: 242 EITVTKKERYRIQLTRYL 259


>gi|220907729|ref|YP_002483040.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
           7425]
 gi|219864340|gb|ACL44679.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7425]
          Length = 259

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/257 (45%), Positives = 173/257 (67%), Gaps = 4/257 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LLKGV ++   E +  +L+   +A    +V+ SDFL+PP L ES   L +L ++ ++  
Sbjct: 6   ELLKGVENR---ETLSRVLDQVEQALKTWDVVCSDFLSPPELAESQTLLARLTEIHSLGW 62

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGYPQAER RL++   E  L  +   + AL I GNF F P SH DFLG+ILGTGI REK+
Sbjct: 63  GGYPQAERQRLAIARQEVPLEGEQVPLVALEIAGNFLFDPASHRDFLGAILGTGIVREKV 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE+GAQ +   E+A++L   L +V  V V   RI L  L+  PP+ K   T+EA
Sbjct: 123 GDIIVLGERGAQAIATTEMAEFLELHLTQVRTVPVQTRRIELSELKIRPPQKKELTTVEA 182

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+ASAGF +SRSK+ +LI+ GDVRVNW  +++   TL+ GD+V++ GKGR+++G+
Sbjct: 183 SLRLDAIASAGFGMSRSKMADLIAAGDVRVNWKDISQPSFTLKAGDLVAIRGKGRLEVGD 242

Query: 306 INSTRKGKFAVELIQYL 322
           +  T+K ++ V+L + +
Sbjct: 243 VQVTKKERYRVQLTRLI 259


>gi|428780106|ref|YP_007171892.1| photosystem II S4 domain-containing protein [Dactylococcopsis
           salina PCC 8305]
 gi|428694385|gb|AFZ50535.1| photosystem II S4 domain protein [Dactylococcopsis salina PCC 8305]
          Length = 259

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 172/258 (66%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           + +LKGV ++   EE+  I+++A +A    EV+ +DFL+PPV+ E+      L +++ + 
Sbjct: 5   EQILKGVENR---EEITRIIDIAEQAMKTWEVVCTDFLSPPVMVEARERFSSLTEIQFIV 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   +       + +AAL + GNF F   +H DFLG+ILGTG+ R K
Sbjct: 62  WGGYPQAERSRMAIARSDLPLDQSQVPIAALDVAGNFLFDTANHRDFLGAILGTGVVRGK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ LVVPEL  +L  +L +V +V V    I L  L+  PP+ K   T+E
Sbjct: 122 VGDIIVLGERGAQILVVPELVSFLEANLNQVRSVPVKTREITLEELKIRPPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASA F +SRSK+ + I  G+VRVNW  +T+    L+ GD+V+V GKGR +IG
Sbjct: 182 ASMRLDAVASAAFGMSRSKMASAIEQGNVRVNWKPITQTSHALKEGDLVAVQGKGRAEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E++ T+K ++ V+L +YL
Sbjct: 242 EVSITKKQRYRVQLTRYL 259


>gi|254416092|ref|ZP_05029847.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196177025|gb|EDX72034.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 259

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 174/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +DLLKGV +++    V  +++ A +A    EV+ +DFL+PPVL E      +L +V+ + 
Sbjct: 5   EDLLKGVENRDT---VARVIDQAEQAIKTWEVVLTDFLSPPVLVEIQQQFARLTEVQLLP 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL +   E       + VAAL I GNF F P +H DFLG+ILGTGI REK
Sbjct: 62  WGGYPQAERQRLGITREELPLDQSQVEVAALDIEGNFLFDPATHRDFLGAILGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +V+PE+  +L T L +V +V V    I L  L+   P+ K   T+E
Sbjct: 122 VGDIIVLGERGAQVIVIPEIVPFLETQLTQVRSVPVKTRPIQLSQLKIREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF  SRSK+ +LI  GDVRVNW  V++   +++ GD++++ GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGTSRSKMADLIGAGDVRVNWKEVSQASYSVKPGDLIAIRGKGRLQVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           +++ T+K ++ ++L +++
Sbjct: 242 DVSITKKERYRIQLTRFI 259


>gi|443312798|ref|ZP_21042413.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
 gi|442777254|gb|ELR87532.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
          Length = 259

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 176/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +++LKGV ++++I     +++ A +A    EV+ +DFL+PP L E      +L +V+ +A
Sbjct: 5   EEILKGVENRDSI---ARVIDRAEQAIKTWEVVLTDFLSPPELAELQKVFSRLTEVQLLA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGY QAER RL+V   E  L      + AL I GNF F   +H DFLG++LGTGI REK
Sbjct: 62  WGGYEQAERQRLAVARSEMPLERHQVELVALEIAGNFLFDTATHRDFLGAMLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GD+I+ GE+GAQ +V PE+A++L  SL++V +V V   RI L  L+   P+ K   T+E
Sbjct: 122 TGDVIVLGERGAQAIVTPEIAEFLEMSLQQVRSVPVKTQRIDLSELKIREPKKKESTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+ +LI  GDVRVNW  +T+    +++GD+++VSGKGR+++G
Sbjct: 182 ASLRLDAIASAGFGMSRSKMSDLIDGGDVRVNWKDITQASYQVKSGDLIAVSGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           EI  T+K ++ ++L +Y+
Sbjct: 242 EIMITKKERYRIQLTRYM 259


>gi|443314925|ref|ZP_21044448.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
 gi|442785487|gb|ELR95304.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
          Length = 276

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 122/258 (47%), Positives = 174/258 (67%), Gaps = 6/258 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLLK V  K+A+     +L+ A +A    EV+ +DFL+PP L E+    ++L +V+ +A 
Sbjct: 23  DLLKAVDHKDAL---TRLLDQADQAIRTWEVVVTDFLSPPELVEAQSLFQRLTEVQFIAS 79

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGYPQAER R ++   E L  DP  +    + I GNF F   +H DFLG++LGTG+ REK
Sbjct: 80  GGYPQAERQRGAIARAE-LPLDPSQIPLTLVDIAGNFLFDTATHRDFLGALLGTGLVREK 138

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ ++VPEL D+L  SL +V +V V    I    L    P+ K   T+E
Sbjct: 139 VGDIIVLGERGAQAIMVPELVDFLTLSLTQVRSVPVKTRPIDWQELRVREPKKKELTTVE 198

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ASAGF +SRSK+V+LIS GDVRVNW ++ ++  TL +GD+V++ GKGR++IG
Sbjct: 199 ASLRLDAVASAGFGMSRSKMVDLISAGDVRVNWKSIDQSSHTLHSGDLVAIRGKGRLEIG 258

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V L +YL
Sbjct: 259 EVVVTKKQRYRVNLTRYL 276


>gi|86606443|ref|YP_475206.1| S4 domain-containing protein [Synechococcus sp. JA-3-3Ab]
 gi|86554985|gb|ABC99943.1| S4 domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 262

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/260 (46%), Positives = 175/260 (67%), Gaps = 7/260 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LLKG   +   E +  IL++  +A    +V+ SDFL+P  + E    L  LA+++ +A 
Sbjct: 6   ELLKGAEYR---ETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVMAW 62

Query: 127 GGYPQAERCRLSVGHPEALT----SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           GGY QAER RL++  PE       ++   +AA+ I GNF F P +H DFLG++L TGIAR
Sbjct: 63  GGYAQAERQRLALARPEVSLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGIAR 122

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EK+GDI++ GE GAQ +VVPEL DYL  +L +V +V V  +RIPL  L+ +PPR KS  +
Sbjct: 123 EKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPVKVSRIPLSQLKVQPPRVKSITS 182

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EASLR+DA+ASAGF LSRSK+V  I  G+VRVNW  +T+   T+   D +++ G+GR++
Sbjct: 183 VEASLRLDAVASAGFGLSRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGRLQ 242

Query: 303 IGEINSTRKGKFAVELIQYL 322
           I E+  T+KG+F +++ +YL
Sbjct: 243 IEEVAETKKGRFRIQMKRYL 262


>gi|428310855|ref|YP_007121832.1| photosystem II S4 domain-containing protein [Microcoleus sp. PCC
           7113]
 gi|428252467|gb|AFZ18426.1| photosystem II S4 domain protein [Microcoleus sp. PCC 7113]
          Length = 259

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/258 (43%), Positives = 177/258 (68%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKGV ++   E +  ++++A +A    EV+ +DFL+PP + +     ++L +V+ +A
Sbjct: 5   EELLKGVENR---ESIARVIDLAEQAIKTWEVVFTDFLSPPEVAQIQQQFQRLTEVQLLA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+++   E       + VAAL I GNF F P +H DFLG+ILGTG+ R+K
Sbjct: 62  WGGYPQAERQRIAIARSELPLDRAQVAVAALDIAGNFLFDPATHRDFLGAILGTGLVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+G Q +VVPE+  +L T L +V +V V    I L  L+   P+ K   T+E
Sbjct: 122 IGDIIVLGERGGQVIVVPEIMGFLETQLTQVRSVPVKTRPIDLSELKIREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SR+K+ +LI+ GDVRVNW  +++    +++GD++++ GKGR++IG
Sbjct: 182 ASMRLDAIASAGFGMSRNKMADLITGGDVRVNWKDISQASHIVKSGDLIAIRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +++
Sbjct: 242 EVAVTKKDRYRVQLTRFM 259


>gi|86609679|ref|YP_478441.1| S4 domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558221|gb|ABD03178.1| S4 domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 259

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 167/252 (66%), Gaps = 8/252 (3%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E +  +L++  +A    +V+ SDFL+PP + E    L  L +++  A GGYPQAER RL+
Sbjct: 8   ETLARVLDLGEQALKTWQVVWSDFLSPPEIAEVQARLCNLTELQVWAWGGYPQAERQRLA 67

Query: 139 VGHPEA------LTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
           +   E         SDP+ +  AA+ I GNF F P +H DFLG++LG GIAREK+GDI+L
Sbjct: 68  LARSEVGLDVRDPKSDPEGIPLAAIQIQGNFLFDPATHRDFLGALLGAGIAREKVGDILL 127

Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
            G+ GAQ +VVPE+ DYL  +L +V  V V   RIPL  L  +PPR KS  ++EASLR+D
Sbjct: 128 LGDSGAQAIVVPEMVDYLTLNLTQVRTVPVKVGRIPLSQLNIQPPRVKSITSVEASLRLD 187

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTR 310
           A+ASAGF +SRSK+V  I  G+VRVNW  +T+   T+   D +++ G+GR++I E+  T+
Sbjct: 188 AVASAGFGISRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGRLQIEEVAETK 247

Query: 311 KGKFAVELIQYL 322
           KG+F V++ +YL
Sbjct: 248 KGRFRVQMRRYL 259


>gi|113477614|ref|YP_723675.1| RNA-binding protein S4 [Trichodesmium erythraeum IMS101]
 gi|110168662|gb|ABG53202.1| RNA-binding S4 [Trichodesmium erythraeum IMS101]
          Length = 259

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 175/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLKG+ ++   E +  I+++A +A    E+  SDFL+PP + ES    +KL +V  V+
Sbjct: 5   EELLKGIQNR---ETITRIIDLAEQAIKTWEITQSDFLSPPEIFESETIFQKLTEVDIVS 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   +       + + A++I GNF F   +H DFLGS+LGTGI REK
Sbjct: 62  WGGYPQAERKRLAIARSDLPIDTSSVELKAINIEGNFLFDTATHRDFLGSMLGTGIEREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII+ GE+GAQ +VVP+L +YL  + ++V +V V    I    L+   P+ K   T+E
Sbjct: 122 TGDIIVLGERGAQAIVVPKLVEYLEMNFQQVRSVPVKIKPIEFSELKIRQPKKKELTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+V+LI  GDVRVNW  +++   T++TGD++++ GKGR+++G
Sbjct: 182 ASMRLDAVASAGFGMSRSKMVDLIDGGDVRVNWKEISQASYTVKTGDLIAIRGKGRLEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           +I  T+K ++ V L +Y+
Sbjct: 242 DIAITKKERYRVHLTRYV 259


>gi|427720370|ref|YP_007068364.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
           7507]
 gi|427352806|gb|AFY35530.1| photosystem II S4 domain protein [Calothrix sp. PCC 7507]
          Length = 259

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 116/259 (44%), Positives = 173/259 (66%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK V ++++I     +++ A +A    EV+ +DFL+PP L E      +L +V+ V 
Sbjct: 5   EELLKSVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVT 61

Query: 126 QGGYPQAERCRLSVGHPEA--LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GGYPQAER R+++   E     S  D+V  L I GNF F   SH DFLG++LGTGI RE
Sbjct: 62  WGGYPQAERQRIAIARAEMPLDQSQVDLVL-LEIAGNFLFDTASHRDFLGAMLGTGIVRE 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GDI++ GE+GAQ +V P+L ++L  SL +V +V V   RI    L+   P+ K   T+
Sbjct: 121 KTGDIVVLGERGAQAIVAPDLVEFLEMSLNQVRSVPVKTRRIDFSELKVREPKKKELTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+V+LI +GDVRVNW  VT+  + ++ GD++++  KGR+++
Sbjct: 181 EASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVTQASSQVKAGDLIAIRTKGRLEV 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           GEI  T+K ++ V+L +Y+
Sbjct: 241 GEIAVTKKDRYRVQLTRYM 259


>gi|359460617|ref|ZP_09249180.1| S4-like domain-containing protein [Acaryochloris sp. CCMEE 5410]
          Length = 259

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 170/255 (66%), Gaps = 4/255 (1%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LL GV   + +     +L+ A +A    EV+ S FL+PP L E+      L +V  +A G
Sbjct: 7   LLNGVEHTDCM---SRLLDQATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWG 63

Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GYPQAER R+++ H +       + +AALSI+GNF F P SH DFLG++LGTGI R+++G
Sbjct: 64  GYPQAERQRIAIAHSDLPLDQSQVDLAALSISGNFLFDPASHRDFLGALLGTGIVRDQVG 123

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
           DI++ GE+GAQ +  P+L  +L T L +V  V V    IP   L+   PR K   T+EAS
Sbjct: 124 DILVLGERGAQAIASPQLVPFLQTHLTQVRTVPVQVEPIPFEQLKVREPRCKEMTTVEAS 183

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           +R+DA+ASAGF LSRSK+VNLI+ GDVRVNW  ++++   L+TGD+V++ GKGR+++GE+
Sbjct: 184 MRLDAVASAGFGLSRSKMVNLINTGDVRVNWKEISQSSYGLKTGDLVTIRGKGRLELGEV 243

Query: 307 NSTRKGKFAVELIQY 321
             T+K ++ ++L ++
Sbjct: 244 QITKKERYRIQLKRF 258


>gi|158337091|ref|YP_001518266.1| S4-like domain-containing protein [Acaryochloris marina MBIC11017]
 gi|158307332|gb|ABW28949.1| uncharacterized conserved protein, contains S4-like domain
           [Acaryochloris marina MBIC11017]
          Length = 259

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 170/255 (66%), Gaps = 4/255 (1%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LL GV   + +     +L+ A +A    EV+ S FL+PP L E+      L +V  +A G
Sbjct: 7   LLNGVEHTDCM---SRLLDQATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWG 63

Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GYPQAER R+++ H +       + +AALSI+GNF F P SH DFLG++LGTGI R+++G
Sbjct: 64  GYPQAERQRIAIAHSDLPLDQSQVELAALSISGNFLFDPASHRDFLGALLGTGIVRDQVG 123

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
           DI++ GE+GAQ +  P+L  +L T L +V  V V    IP   L+   PR K   T+EAS
Sbjct: 124 DILVLGERGAQAIASPQLVPFLQTHLTQVRTVPVQVEPIPFEQLKVREPRCKEMTTVEAS 183

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           +R+DA+ASAGF LSRSK+VNLI+ GDVRVNW  ++++   L+TGD+V++ GKGR+++GE+
Sbjct: 184 MRLDAVASAGFGLSRSKMVNLINTGDVRVNWKEISQSSYGLKTGDLVTIRGKGRLELGEV 243

Query: 307 NSTRKGKFAVELIQY 321
             T+K ++ ++L ++
Sbjct: 244 QITKKERYRIQLKRF 258


>gi|384249277|gb|EIE22759.1| photosystem II S4 domain protein [Coccomyxa subellipsoidea C-169]
          Length = 298

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 179/269 (66%), Gaps = 14/269 (5%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           DDLLKGV  ++  ++V  ++E A+RA+S    + +DF  PPV+ ++M A+++LA V A++
Sbjct: 32  DDLLKGVNPQHR-DDVARVVEQAQRAASMWTTICTDFHPPPVVADAMNAMKQLAGVAALS 90

Query: 126 QGGYPQAERCRLSVGHP---EALTSDP---------DIVAALSITGNFGFQPCSHGDFLG 173
            GGY QAER R+ +G     EAL +DP         + VAAL + GNF F   +H DFLG
Sbjct: 91  FGGYAQAERTRIFLGQEDIIEALKADPQQVSCKAQAEGVAALRVQGNFMFDAATHRDFLG 150

Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
           +ILGTGI R K+GDIIL GE GAQ LV  EL D+   +L +V +V V   R+ L  L   
Sbjct: 151 AILGTGIERSKVGDIILVGETGAQILVAEELLDHFELNLTQVRSVPVVSRRMELAELSVR 210

Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
           P +T++ +++EASLR+DA+ASAGF++SR+K  +LI  GDVRVNW    K  + ++ GD++
Sbjct: 211 PAKTETVRSVEASLRLDAVASAGFRISRAKAADLIKQGDVRVNWIQ-AKGSSLVKEGDVI 269

Query: 294 SVSGKGRIKIGEINSTRKGKFAVELIQYL 322
           S SGKGRI+I   + T+K + AVE+ +Y+
Sbjct: 270 SCSGKGRIEIISTSLTKKDRHAVEMTRYV 298


>gi|428772974|ref|YP_007164762.1| photosystem II S4 domain-containing protein [Cyanobacterium
           stanieri PCC 7202]
 gi|428687253|gb|AFZ47113.1| photosystem II S4 domain protein [Cyanobacterium stanieri PCC 7202]
          Length = 259

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/259 (45%), Positives = 174/259 (67%), Gaps = 6/259 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +D+L  V ++    E+  +L+ A +A    E++ +DFL+PPVL E      +L +V+ + 
Sbjct: 5   EDILNRVENR---AEIAKVLDKAEQAIKTWELVVTDFLSPPVLAEVNEIFAQLTEVQIIP 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GG+PQAER R+ + H E +  D     VAAL I GNF F   +H DFLG+ILG G+ RE
Sbjct: 62  WGGFPQAERKRVGI-HREEIPCDVSQMPVAALDIAGNFLFDTATHRDFLGAILGAGVVRE 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K+GDII+ GE+GAQ +V PE+ D+  +SL +V +V V   RI L  L+   P+ K   T+
Sbjct: 121 KVGDIIVLGERGAQVVVNPEMVDFFESSLVQVRSVPVKTKRIELSDLKVREPKKKEMTTV 180

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+AS GF LSRSK+V+ I+NGDVRVNW  VT++   L+TGD+VS  GKGR++I
Sbjct: 181 EASLRLDAIASYGFGLSRSKMVDAINNGDVRVNWKEVTQSSYNLKTGDLVSFRGKGRLEI 240

Query: 304 GEINSTRKGKFAVELIQYL 322
           G+I+ T+K ++ + L +++
Sbjct: 241 GDISITKKERYRIALTRFV 259


>gi|428769447|ref|YP_007161237.1| photosystem II S4 domain-containing protein [Cyanobacterium
           aponinum PCC 10605]
 gi|428683726|gb|AFZ53193.1| photosystem II S4 domain protein [Cyanobacterium aponinum PCC
           10605]
          Length = 259

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 171/258 (66%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK V +K   E++  +++ A +A    E++ +DFL+PPVL E       L +VK V 
Sbjct: 5   EELLKRVENK---EDIARVIDKAEKAVKTWELVVTDFLSPPVLAEVNEIFASLTEVKIVC 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +   E      +I + AL + GNF F   +H DFLG+ILGTGI R+K
Sbjct: 62  WGGYPQAERQRVGIHREEVYAGVAEIPLMALDVAGNFLFDTATHRDFLGAILGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+GAQ +V PE+ ++L TSL +V +V V   +I L  L+  PP+ K   T+E
Sbjct: 122 IGDIIVLGERGAQVIVTPEIGEFLETSLTQVRSVPVKTGKIDLSDLKIRPPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+AS GF +SRSK+ + I+NGDVRVNW  +T+    ++ GD+VS  GKGR++IG
Sbjct: 182 ASLRLDAIASFGFGISRSKMADAINNGDVRVNWKEITQPSYNVKDGDLVSFRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
            I  T+K ++ + L +++
Sbjct: 242 AIALTKKERYRINLTRFV 259


>gi|411119486|ref|ZP_11391866.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
           JSC-12]
 gi|410711349|gb|EKQ68856.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
           JSC-12]
          Length = 259

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 172/258 (66%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           DDLLKGV ++ AI     +++ +  A    EV+ +DFL+PP L E       L +V+ VA
Sbjct: 5   DDLLKGVENREAI---ARVIDQSELAIKTWEVVCTDFLSPPELAEIQEVFSCLTEVQMVA 61

Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGY QAER RL++   E  L+ +   ++AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62  WGGYLQAERQRLAIARAELPLSVEQVSLSALEIAGNFLFDPATHRDFLGAILGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GD+++ GE+GAQ +VVPE+ ++LI +L +V +V V    I    L+   P+ K   T+E
Sbjct: 122 VGDVLVLGERGAQAIVVPEMVEFLIMNLTQVRSVPVKTRAIAFDELKIREPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SR+K+V+LI  G+VRVNW   T     ++  D++++ GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGISRNKMVDLIEAGEVRVNWKETTSASYVVKAKDLIAIRGKGRVEVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +Y+
Sbjct: 242 EVAVTKKDRYRVQLTRYV 259


>gi|427420696|ref|ZP_18910879.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
 gi|425756573|gb|EKU97427.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
          Length = 259

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 172/258 (66%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           DDLLKGV +    E +  +++ A ++    E + +DFL+PP L E+     +L D+    
Sbjct: 5   DDLLKGVENT---ETLTRVIDQADQSIRTWEPVTTDFLSPPELYEAQAIFGRLTDIHTQV 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER RL++   E      ++ +A LS+ GNF F   +H DFLG++LGTGI REK
Sbjct: 62  HGGYPQAERQRLTIARTEIPLEGQELPLALLSVAGNFLFDTATHRDFLGALLGTGIVREK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII+ GE+GAQ +VVPEL ++L  SL +V +V V    I    L    P+ K   T+E
Sbjct: 122 VGDIIVLGERGAQLIVVPELVEFLEISLTQVRSVPVKTKPIDWSELRVREPKKKEITTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF +SRSK+ ++I+ GDVRVNW T++++   L++GD+V++ GKGR++IG
Sbjct: 182 ASMRLDAVASAGFGMSRSKMADMITAGDVRVNWKTISQSSHGLKSGDLVAIRGKGRLEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           ++  T+K ++ + L +Y+
Sbjct: 242 DVMITKKQRYRIGLTRYV 259


>gi|428777211|ref|YP_007168998.1| photosystem II S4 domain-containing protein [Halothece sp. PCC
           7418]
 gi|428691490|gb|AFZ44784.1| photosystem II S4 domain protein [Halothece sp. PCC 7418]
          Length = 259

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 173/258 (67%), Gaps = 4/258 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           +++L+GV ++   EE+  ++++A +A    E + +DFL+PPV  E+      L +++ + 
Sbjct: 5   EEILRGVENR---EEITRVIDIAEQAIKTWETVCTDFLSPPVAVEAQDKFSLLTEIQFMV 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGYPQAER R+ +   E       + +AAL ++GNF F   +H DFLG+ILGTG+ R+K
Sbjct: 62  WGGYPQAERVRMGITRAELPLDQSQVPIAALDVSGNFLFDTANHRDFLGAILGTGVVRQK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI++ GE+GAQ LVVPEL  +L  +L +V +V V    I L  L+  PP+ K   T+E
Sbjct: 122 VGDIVVLGERGAQILVVPELVSFLEANLNQVRSVPVKTREIGLEELKIRPPKKKEMTTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ SA F +SRSK+ + I+ G+VRVNW  +T+   +L+ GD+++V GKGR +IG
Sbjct: 182 ASMRLDAVGSAAFGMSRSKMASAIAQGNVRVNWKPITQASHSLQEGDLIAVQGKGRAEIG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E++ T+K ++ V+L +Y+
Sbjct: 242 EVSITKKQRYRVQLTRYV 259


>gi|303285910|ref|XP_003062245.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456656|gb|EEH53957.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 244

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 164/242 (67%), Gaps = 3/242 (1%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           I E A  AS    V  + FL P +  +++  + ++ADV A   GGY +AER RL +G  E
Sbjct: 3   IAERAEAASDAWSVHVTPFLDPALAADALAVVGRMADVDARPWGGYDRAERVRLVIGRAE 62

Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
            L + P  V+A  ++GNF F    H DFLG++LGTGI R+++GDI++QGE+GAQ L  PE
Sbjct: 63  VLDAPPACVSAYKLSGNFMFDAADHRDFLGAVLGTGIERDRVGDILVQGERGAQVLATPE 122

Query: 204 LADYLITS---LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 260
           +A +L  +   L  V +V V+C   PL  L   PPR  +F ++EAS+R+DA+ASAGF++S
Sbjct: 123 MATFLSQARPALTSVRSVPVACAAAPLSDLRVPPPRVDAFNSVEASMRLDAIASAGFRMS 182

Query: 261 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 320
           RSK+ +L+++G VRVNW    K  T + TGD++S+ GKGR+++GE+ +T+KGKF+V+L +
Sbjct: 183 RSKMSDLVTSGAVRVNWREGCKPKTVVATGDVISLRGKGRVEVGEVETTKKGKFSVQLTR 242

Query: 321 YL 322
           YL
Sbjct: 243 YL 244


>gi|443320974|ref|ZP_21050044.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
 gi|442789300|gb|ELR98963.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
          Length = 259

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 176/258 (68%), Gaps = 6/258 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           ++LK V ++   EE+  IL+++ +A     ++ +DFL+P +L E++     L ++  +A 
Sbjct: 6   EILKRVENR---EEIARILDLSEQAWKTWSIVLTDFLSPTILVEALPLFTDLTELHCLAW 62

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGYPQAER RL +G  E +  D ++V  A L I GNF F   +H DFLG+ILGTGI R+K
Sbjct: 63  GGYPQAERQRLGLGRTE-VPIDTEVVELAVLKIEGNFLFDVATHRDFLGAILGTGIVRDK 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDII+ GE+GAQ +VVPE+ D+L  ++ +V +VSV    I +  L+  P +TK  +T+E
Sbjct: 122 IGDIIVLGERGAQVIVVPEMVDFLCGTVVQVRSVSVQTKPIAVGELKITPAKTKEIQTVE 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS+R+DA+ASAGF LSRSK+   IS+GDVRVNW  V+     L +GD++S  GKGR+++G
Sbjct: 182 ASMRLDAIASAGFGLSRSKMAEAISSGDVRVNWKEVSSPSYQLHSGDLISFQGKGRLQVG 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K ++ V+L +YL
Sbjct: 242 EVAITKKERYRVQLTRYL 259


>gi|443475431|ref|ZP_21065381.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
 gi|443019738|gb|ELS33786.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
          Length = 258

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/254 (44%), Positives = 167/254 (65%), Gaps = 6/254 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL  V +++ +     +L++  RA    EV+ SDFL+PP + E++    K+ ++  +A 
Sbjct: 5   DLLNHVENRDTL---SRLLDLGDRAVQTWEVVCSDFLSPPEITEALQVFGKMTEIHCLAW 61

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGY QAER RL++   E L  DP +V+  A+SI GNF F   +H DFLG+ILGTGI R+K
Sbjct: 62  GGYEQAERQRLAIARSE-LPLDPSMVSLTAISIAGNFLFDTATHRDFLGAILGTGIERQK 120

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GD+ + GEKGAQ +VVPEL +YL     +V  V V    I    L+   P TK   + E
Sbjct: 121 VGDVNVLGEKGAQAIVVPELVEYLQLHFNQVRTVPVKVNAIAWEELKIRIPVTKELTSTE 180

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+AS GF +SRSK+V+LI+  DVRVNW T+++    L++GD++++ GKGR+ IG
Sbjct: 181 ASLRLDAIASFGFGMSRSKMVDLINGEDVRVNWKTISQPNYQLKSGDLIAIRGKGRVTIG 240

Query: 305 EINSTRKGKFAVEL 318
           +I  T+K ++ V++
Sbjct: 241 DIMITKKERYRVQM 254


>gi|37519960|ref|NP_923337.1| hypothetical protein gll0391 [Gloeobacter violaceus PCC 7421]
 gi|35210952|dbj|BAC88332.1| gll0391 [Gloeobacter violaceus PCC 7421]
          Length = 262

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 166/257 (64%), Gaps = 4/257 (1%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK    ++A+  V  + E A R  S   V+ SDF +PP + E +    +L +V A A
Sbjct: 8   EELLKRAEHRDALARVLDLAETALRDWS---VVTSDFYSPPEVGECLDVFSRLVEVHAAA 64

Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGY QAER R++V     A+ +    +AA+ I GNF F   SH DFLG+ILGTGI R K
Sbjct: 65  WGGYSQAERQRIAVSRDNIAIETAAIPLAAVDIRGNFLFDAASHRDFLGAILGTGIVRGK 124

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI++ G++GAQ LV PEL  +L TSL  V  V V    I    L   PP+TK   ++E
Sbjct: 125 VGDILVLGDRGAQTLVAPELVPFLQTSLTSVRTVPVQVVPIGFEELRIRPPQTKEITSVE 184

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+ SAGF LSR+K+V  I  G+V +NW TVT+    ++TGD +++ G+GR+++G
Sbjct: 185 ASLRIDAIGSAGFGLSRNKMVESIEAGEVTLNWKTVTQPSKNVQTGDRITLRGRGRLEVG 244

Query: 305 EINSTRKGKFAVELIQY 321
            +++T+KG++ V++I+Y
Sbjct: 245 PVDTTKKGRYRVQMIRY 261


>gi|255081170|ref|XP_002507807.1| predicted protein [Micromonas sp. RCC299]
 gi|226523083|gb|ACO69065.1| predicted protein [Micromonas sp. RCC299]
          Length = 311

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 166/267 (62%), Gaps = 13/267 (4%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LL GV    +I  V  I E A+ AS R     ++FL P +  ++ + ++++AD +A   G
Sbjct: 46  LLSGV-HPESIAAVSAIAERAQAASDRWGTEVTEFLDPALAADARVVIDRMADCEARPWG 104

Query: 128 GYPQAERCRLSVGHPEALTSDPD------------IVAALSITGNFGFQPCSHGDFLGSI 175
           GY +AER RL +G  E L  D D             VA L ++GNF F    H DFLG+ 
Sbjct: 105 GYDRAERVRLVIGRREVLDGDGDDSFAALTDATNGCVALLQVSGNFMFDAADHRDFLGAA 164

Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
           LG GI R+++GDI++QGE+GAQ L    +A +L +++  V  V V+ +  PL  L   PP
Sbjct: 165 LGAGIERDRLGDILVQGERGAQILATRPMAAFLSSAMTSVRKVPVATSIAPLTDLRVPPP 224

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           R  +F ++E S+R+DA+ASAGF++SRSK+ +LI+ G V+VNW    K  T  ++GD++S+
Sbjct: 225 RVDTFASVEKSMRLDAVASAGFRMSRSKMSDLIAAGAVKVNWREGAKPKTECKSGDVISL 284

Query: 296 SGKGRIKIGEINSTRKGKFAVELIQYL 322
            GKGR+++GE+ +T+KG F V+L +YL
Sbjct: 285 RGKGRVEVGEVTTTKKGSFNVQLTRYL 311


>gi|422293742|gb|EKU21042.1| rna-binding s4 [Nannochloropsis gaditana CCMP526]
          Length = 325

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 107/246 (43%), Positives = 157/246 (63%), Gaps = 8/246 (3%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL------- 137
           +E A +A S  E+   DF  PP +      L ++AD+     GG+PQAER R+       
Sbjct: 80  VEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALD 139

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +V   +A       +AA+S+ GNF F   +H DFLG++LGTGIAREK+GDI+LQGE+GA
Sbjct: 140 YAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGA 199

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
             +V P++A+Y++ SL  V +V V    I L  L   PP TK  +++EAS+R+DA+ASAG
Sbjct: 200 HVVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEMQSVEASMRLDAVASAG 259

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAV 316
             +SRSKL ++I  GDV VNW  +T     L+ GDIV++ GKGR+++ E+ +T KGKF V
Sbjct: 260 MGMSRSKLKDMIEGGDVLVNWKEITSANAQLKGGDIVTIRGKGRLEVNEVETTSKGKFRV 319

Query: 317 ELIQYL 322
           ++ +++
Sbjct: 320 KMTKFV 325


>gi|308805044|ref|XP_003079834.1| unnamed protein product [Ostreococcus tauri]
 gi|116058291|emb|CAL53480.1| unnamed protein product [Ostreococcus tauri]
          Length = 306

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/250 (39%), Positives = 152/250 (60%), Gaps = 6/250 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE-KLADVKAVAQ-GGYPQAERCR 136
           E V   +E   RA  R  V  ++F+ P  +   + ++  +  D  A+ Q GG+  AER R
Sbjct: 57  ETVSRAIERGERALERWSVETTEFMDPGAMTSVVSSVRARFGDEVAIEQWGGFSAAERRR 116

Query: 137 LSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
            ++   E   SD ++   V  L ++GNF F   +H DFLG+ILGTGI RE++GDI++ GE
Sbjct: 117 ATISRSETPASDEEVRANVKVLRVSGNFMFDAATHRDFLGAILGTGIKRERVGDIVVTGE 176

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
           +GA  +V PE+ ++L T+L  V  V V    +    L+   P+T+  +T E+S R+DA+ 
Sbjct: 177 RGADVMVTPEMCEFLSTALTSVRTVKVEAREVDASELKVPEPKTEEMQTSESSTRLDAIG 236

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-G 312
           SAGF++SRSK +  + +GDV+VNW  V+K    L  GD++S  GKGR+++ EIN  RK G
Sbjct: 237 SAGFRMSRSKFMAHVDSGDVKVNWKEVSKGRHDLNAGDVISCRGKGRVEVLEINPARKEG 296

Query: 313 KFAVELIQYL 322
           +F V L++++
Sbjct: 297 RFFVRLLRFV 306


>gi|145348001|ref|XP_001418446.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578675|gb|ABO96739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 303

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 145/247 (58%), Gaps = 5/247 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
           VK  +E A R   R  V   +FL P  L     A+  +   +V+  A GG+  AER R +
Sbjct: 57  VKRAVERAERVRDRWTVETIEFLDPGALHSVENAVRAVCGDEVEVRAWGGFASAERRRAT 116

Query: 139 VGHPEALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           +   +++  +   D V  L + GNF F   +H DFLG+ILGTGI REK+GDI++ GE+GA
Sbjct: 117 IARADSVDEEEIRDTVRVLRVQGNFMFDAATHRDFLGAILGTGIKREKVGDIVVTGERGA 176

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
             +V PE+A++L T+L  V  V V    +    L+   P+ +   + E+S R+DAL SAG
Sbjct: 177 DVMVSPEMAEFLSTALTSVRTVKVEAREVDASELKVPEPKVEDIFSSESSTRLDALGSAG 236

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFA 315
           F++SRSK V  + +GDV+VNW  V K    L  GD+VS  GKGR+++ +I   RK G+FA
Sbjct: 237 FRMSRSKFVAHVESGDVKVNWKEVKKGRYDLSAGDVVSCRGKGRLEVVDIQPARKEGRFA 296

Query: 316 VELIQYL 322
             L +Y+
Sbjct: 297 CNLRRYV 303


>gi|22299704|ref|NP_682951.1| hypothetical protein tlr2161 [Thermosynechococcus elongatus BP-1]
 gi|22295888|dbj|BAC09713.1| tlr2161 [Thermosynechococcus elongatus BP-1]
          Length = 243

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAAL 155
           V+H+ FL P  + E++  LE+ ADV  +A GGYPQAERCRL++   E  L      +A  
Sbjct: 17  VVHTLFLPPDRVVEALGVLEQRADVHGLAWGGYPQAERCRLAIAPVELPLEGQQPPLALG 76

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            ITGNF F P ++ DF G+I   G+     GD+IL GE+GAQ +++PE    L   L++V
Sbjct: 77  RITGNFLFDPATYSDFEGAIASVGLDEGDYGDVILLGERGAQVILIPEKVSTLQKELKQV 136

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
             V V+        L   PP+ KS  T+EASLR+DA+ASAGF +SRSK+   IS G VRV
Sbjct: 137 RTVPVTVDLCDWSELAVAPPQRKSLSTVEASLRLDAVASAGFGVSRSKMSEWISQGLVRV 196

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           NW  V +    L+  D++++ GKG+++I EI  T+K ++ +++
Sbjct: 197 NWQVVQQPRYLLKVNDLIAIRGKGQLRIQEIQLTKKERYRIQM 239


>gi|427711215|ref|YP_007059839.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
           6312]
 gi|427375344|gb|AFY59296.1| photosystem II S4 domain protein [Synechococcus sp. PCC 6312]
          Length = 258

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/241 (40%), Positives = 148/241 (61%), Gaps = 2/241 (0%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           + +K IL  + +A    EV+ +DFL P V  E++ AL +L D+   A GGYPQAER R+ 
Sbjct: 15  QALKQILNQSEQAFKTWEVVVTDFLDPLVRLEAIAALNQLTDLHYQAWGGYPQAERQRMV 74

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +   +      +I +   +I GNF F P +  DF  +++  GI  ++IGDIIL G++GAQ
Sbjct: 75  LARTDIPLDQSNIGLELWAIAGNFLFDPPTDTDFHQALIMAGIPTDQIGDIILLGDRGAQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            ++VP L D  +  +++V  V V+        L   PP+ K+  T+EASLR+DALASAGF
Sbjct: 135 VILVPGL-DISLGQVKQVRTVPVNAQPQAWQELRVRPPQIKTLTTVEASLRLDALASAGF 193

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
            +SRSK+V +I+ G VRVNW  + +    L+TGD+V++  +G + IG I  T+K ++ VE
Sbjct: 194 GMSRSKMVEMINGGAVRVNWQPINQPSHLLKTGDLVTLKQRGHLTIGSIQVTKKERYRVE 253

Query: 318 L 318
           L
Sbjct: 254 L 254


>gi|449017158|dbj|BAM80560.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 340

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/273 (38%), Positives = 165/273 (60%), Gaps = 17/273 (6%)

Query: 66  DDLLKGVGDKNAIEEVK-HILEMARRASSRREVLHSDF-LTPPVLKESMMALEKLADVKA 123
           D +LK +      EEV   ++++A +A+   +V+ +DF L P  L     ALE LA V  
Sbjct: 69  DKVLKTLQTVQVAEEVAVRLVDLAIKATKNYQVVATDFFLRPNELHGMKQALESLAFVGV 128

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI------------VAALSITGNFGFQPCSHGDF 171
            + GGY  AER +++  +P+     P+             + AL + GNF F   SH DF
Sbjct: 129 TSSGGYAAAER-QIAAFYPKDFAPTPEQEQQVATTHCESQLLALELAGNFIFDRASHSDF 187

Query: 172 LGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA- 229
           LG+++G +G+ RE+ GDII+ G++GAQ +V+   A+ + +S++ V +V+V   ++  LA 
Sbjct: 188 LGALIGCSGLRRERFGDIIILGDRGAQVVVLKNDAETIRSSVKMVRSVTVRTRQLGSLAE 247

Query: 230 LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 289
           LE +PPRTK+  ++EASLR+DA+ SAGF +SR+K+V +I NGDV VNW  V      +  
Sbjct: 248 LEVQPPRTKTLTSVEASLRLDAVGSAGFGMSRTKMVEMIKNGDVHVNWVPVKSASRNVAE 307

Query: 290 GDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322
           GD ++  G+GR+++  I  T +G+F VEL +Y+
Sbjct: 308 GDTITARGRGRLQVISIAITSRGRFRVELKRYI 340


>gi|435853593|ref|YP_007314912.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
           5150]
 gi|433670004|gb|AGB40819.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
           5150]
          Length = 261

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 152/267 (56%), Gaps = 16/267 (5%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N + LL  +  K A   V  IL+ A  A    +   +DFL P  L  +   L ++ D+K 
Sbjct: 3   NKEKLLSHLDSKEA-SNVDKILDKAELALIDHKPTFTDFLNPRQLYIAKPVLAQIRDLKY 61

Query: 124 VAQGGYPQAERCRLSVGHPEALTSD---PDIV----AALSITGNFGFQPCSHGDFLGSIL 176
           +  GGY +AER  L      AL  D   PD++      L+ITG F FQ  SH DFLG+IL
Sbjct: 62  LEYGGYNKAERKML------ALVPDYYIPDMIDPPLTVLNITGQFKFQQVSHRDFLGAIL 115

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
           GTGI R+K+GD++L  +KG Q ++  ++ D+++ +LE+V  + V    I    L  EP R
Sbjct: 116 GTGIKRKKVGDLVLY-KKGCQAIIAEQIKDFIMLNLEQVHQIGVQVEEISTTELRIEPQR 174

Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
           TK  +   ASLR+D++AS+GF  SRSK+   I  G V+VNW  V      + T DI+S+ 
Sbjct: 175 TKEIRDTVASLRLDSVASSGFSTSRSKMSKQIEKGSVKVNWKIVDDTSYMVDTDDILSIR 234

Query: 297 GKGRIKIGEI-NSTRKGKFAVELIQYL 322
           G+GR++I EI   +R+G+  + L +YL
Sbjct: 235 GRGRVEIDEILGKSRRGRIKLRLKRYL 261


>gi|225181688|ref|ZP_03735128.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167669|gb|EEG76480.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 261

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 139/222 (62%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV--AALSI 157
           +DFL P   + +   L    DVK+V  GGYP+AER RL V +P    +D + V  A + +
Sbjct: 38  TDFLDPFQQRTADRVLHLFKDVKSVTWGGYPEAERARLLV-YPSQRQADKESVPLAFIEV 96

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
             +      +H D+LG++LG G+ REK+GDI+L GE  AQ +V PE+  +L+T+  +VG 
Sbjct: 97  EAHKA-DGLTHRDYLGAVLGLGLRREKLGDILLIGESKAQLVVHPEILSFLLTNWGEVGK 155

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            SVS   I    L   PPR +  KT  ASLR+D++ASAGF +SRSKL   + +G +++NW
Sbjct: 156 YSVSVKEITADELAPTPPRVREIKTTVASLRLDSVASAGFGMSRSKLSPAVKSGQIKLNW 215

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
            +VT    T++ GDI+S++G+GR+++ E+   ++KG+  + L
Sbjct: 216 QSVTSASATVKEGDIISLAGRGRVEVAEVRGQSKKGRIQLLL 257


>gi|302391658|ref|YP_003827478.1| RNA-binding S4 domain-containing protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203735|gb|ADL12413.1| RNA-binding S4 domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 264

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/264 (35%), Positives = 151/264 (57%), Gaps = 9/264 (3%)

Query: 64  NFDDLLKGVGDKNAIEEVK--HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121
           N +  L+ +  K+  EE+    +L+ AR A  + E   ++FL P   +     L+++ D+
Sbjct: 3   NREKFLRYIKAKDEEEELTAAKVLDKAREALQKHEPTFTNFLNPYQRELLTSILDQIYDL 62

Query: 122 KAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
           K +  GG+ +AER R+ +    +   +  +P  +    I+GNF F   SH DFLG+ILGT
Sbjct: 63  KYLLYGGFERAERKRIGLMPDYYMREIVDNP--LTIFEISGNFNFASVSHRDFLGAILGT 120

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           GI RE +GD+I+  +K  Q +V  E+ DYL+ +L++V NV V    I    LE EP   K
Sbjct: 121 GIKREVVGDLIVSSDK-CQVIVAEEIKDYLLFNLKRVHNVPVEVEEIDAEKLEVEPEHVK 179

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
             K+  ASLR+D++AS+GF  SR+K+   I  G+V++NW        T+   DI+S+ G+
Sbjct: 180 EIKSTVASLRLDSVASSGFSTSRTKMAREIEAGNVKLNWKIEDDPAQTVELDDIISIRGR 239

Query: 299 GRIKIGE-INSTRKGKFAVELIQY 321
           GR++I + +  +RK +  + L +Y
Sbjct: 240 GRVEIDQHLGRSRKDRIKLILKRY 263


>gi|296133619|ref|YP_003640866.1| RNA-binding S4 domain-containing protein [Thermincola potens JR]
 gi|296032197|gb|ADG82965.1| RNA-binding S4 domain protein [Thermincola potens JR]
          Length = 260

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 143/246 (58%), Gaps = 11/246 (4%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSV 139
            I++ A+ A    + + SDFL P    + +MA + ++ +  +     GGY  AER R+ +
Sbjct: 20  KIIDKAQSALKIYQPVFSDFLDPG---QQVMAKKLVSGIYGLTWKFDGGYDSAERKRMII 76

Query: 140 GHPEALT--SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
             PE L+    P+ +  L + GNF F+  +H DFLG++L TGI REK+GDII+  + G Q
Sbjct: 77  -FPEDLSWGEIPECICCLQVAGNFRFRKATHRDFLGAVLNTGIRREKLGDIIVV-DDGCQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +VVPE+ DYL  +L K+  V V  T I    L      TK   T  +SLR+DA+A AGF
Sbjct: 135 LIVVPEIKDYLAQNLFKIHQVPVKVTEISREELISPADNTKIIDTTVSSLRLDAVAGAGF 194

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
            +SRSK+V  I++  V+VN+ T+T     +  GD+VS  G GRI I ++   TRKG+  +
Sbjct: 195 GISRSKIVKYINSEKVKVNFETITDADYRINEGDVVSTRGLGRISIEKVKGDTRKGRIGI 254

Query: 317 ELIQYL 322
            + +YL
Sbjct: 255 VIKRYL 260


>gi|251797860|ref|YP_003012591.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JDR-2]
 gi|247545486|gb|ACT02505.1| RNA-binding S4 domain protein [Paenibacillus sp. JDR-2]
          Length = 257

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 139/245 (56%), Gaps = 7/245 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V   LE   R++   E+  +DFL P   +   M   +  DV+    GGYP+AERCR  +G
Sbjct: 17  VDRALEWVERSAQLHELKRTDFLDPRQAQILQMLANRNPDVQLRLAGGYPEAERCRAIIG 76

Query: 141 HPEA--LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
            PE   L  +P  ++ L++TG  G     HGD+LG++LG G+ R++IGDI +  E  +  
Sbjct: 77  -PEYRYLDDEPIGLSVLAVTG--GGSELDHGDYLGALLGLGVKRDRIGDIHVH-EDYSHI 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V+ E+ADYL   L +V   SV    IP L L+   P  +      AS+R+D +AS  ++
Sbjct: 133 IVLDEIADYLNVHLRQVHRASVLTEIIPTLKLKPVVPALQEMSFTVASMRLDGIASDVYR 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           +SR+K+V+ I  G  RVNW T       L+ GD+VS  G GR K+ EI+  T+KG+  V+
Sbjct: 193 ISRTKIVDPIRAGRCRVNWKTAENPSEQLKLGDVVSFKGLGRFKVMEIDGMTKKGRIRVK 252

Query: 318 LIQYL 322
           + +++
Sbjct: 253 VGKFI 257


>gi|87301211|ref|ZP_01084052.1| RNA-binding S4 [Synechococcus sp. WH 5701]
 gi|87284179|gb|EAQ76132.1| RNA-binding S4 [Synechococcus sp. WH 5701]
          Length = 264

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 146/259 (56%), Gaps = 7/259 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL+G  D  A+E    ++ +A  A    +   S FL+    +E+M  L  L+++   A+
Sbjct: 9   DLLRGSRDPAALEP---LIVLADHALRDWQPHWSGFLSALAWEEAMERLGSLSELHLEAE 65

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           GG PQAERCRL +   + A  S P    +A L ++GNF F P   GD    +L  G    
Sbjct: 66  GGRPQAERCRLLLQRRDLAAGSTPPTAPLAGLEVSGNFLFDPAEPGDVRAGLLAAGALDG 125

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFKT 242
           ++GD+ L+G++GAQ +V P+LA  L  +  +V +V V      L  L+    P+ +   T
Sbjct: 126 ELGDLWLRGDRGAQVIVDPQLAARLGGTTARVRSVEVKLEARGLDQLQPPTRPQPRQLAT 185

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EASLR+DA+ASAGF LSRS++ +L+  G  RVNW  VT     L+TGD + +  +G + 
Sbjct: 186 VEASLRLDAVASAGFGLSRSRMADLVRRGAARVNWQPVTTPSRDLKTGDRIQLENRGELT 245

Query: 303 IGEINSTRKGKFAVELIQY 321
           +  I  T++ ++ +EL ++
Sbjct: 246 VLSIQPTKRQRWRLELQRH 264


>gi|318042231|ref|ZP_07974187.1| hypothetical protein SCB01_11007 [Synechococcus sp. CB0101]
          Length = 263

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 142/256 (55%), Gaps = 11/256 (4%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           D LLKG       +E+  ++++A +A    E   SDF+   + +E+   L  L++V   A
Sbjct: 5   DTLLKG---SRRPQELAGLIDLAEQALRTWEPCWSDFVDAELKEEAEARLGALSEVDLWA 61

Query: 126 QGGYPQAERCRLSVGHPEA--LTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGI 180
            GG+PQAERCRL V   +   L   P  +A    L ++GNF F P    D    +   G+
Sbjct: 62  DGGWPQAERCRLLVRRADQADLVDAPAPLAEICGLVVSGNFLFDPAEPADVREGLRQAGL 121

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLE-KVGNVSVSCTRIPLLALEYEPPRT-K 238
               +GD+ ++G++GAQ L+  E A+ L    E +V +V V    +PL  L++   R  K
Sbjct: 122 QDSDLGDVWMRGDRGAQALIRKE-AEVLADQREAQVRSVPVQLQVVPLEQLQWPASRAPK 180

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              ++EASLR+DA+ASAG  LSRS++ +LI  G VRVNW  +T     LR GD V + G+
Sbjct: 181 QLSSVEASLRLDAVASAGLGLSRSRMADLIRQGSVRVNWQVITSPSKELRCGDRVRLDGR 240

Query: 299 GRIKIGEINSTRKGKF 314
           G ++I EI  T++ ++
Sbjct: 241 GELEILEIQPTKRDRW 256


>gi|298704938|emb|CBJ28441.1| RNA-binding S4 [Ectocarpus siliculosus]
          Length = 158

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 104/155 (67%)

Query: 166 CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI 225
             H DFLG+I+  G+ R+ IGDI++QGE+GAQ LV P +A++L  SL  V +V V    I
Sbjct: 2   ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPI 61

Query: 226 PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGT 285
           PL  L   P +TK   T+EASLR+D++ASAG  +SRSK+   I +G V VNW   +   T
Sbjct: 62  PLEELAVRPAKTKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAASSGTT 121

Query: 286 TLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 320
            +R GDIV+V GKGR++IG+I  T+KG++ + + +
Sbjct: 122 NVREGDIVTVRGKGRVEIGDITVTKKGRYKINMCR 156


>gi|150390561|ref|YP_001320610.1| RNA-binding S4 domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950423|gb|ABR48951.1| RNA-binding S4 domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 262

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 139/257 (54%), Gaps = 3/257 (1%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N D  ++ + D+        +L+       + EV +++FLTP  +K  +  L    ++  
Sbjct: 3   NRDQYIEHIQDEKLKLVAVKLLDKVEMVMRKHEVKYTNFLTPYEIKHMLAILNTFEEICF 62

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            A GG+  AER  L +       SD +  +AA+ I  +  F    H DFLG+ILG GI R
Sbjct: 63  FAIGGHEDAERKTLVIFQAYLDPSDIESPIAAIEIQSSTRFNQLMHRDFLGAILGLGIKR 122

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EKIGDI+LQ +   Q ++  EL DY++ +L KVGN+SV    I L  ++      K  + 
Sbjct: 123 EKIGDILLQDD-ICQVVITTELRDYVLLNLVKVGNMSVKVREIELEEIKAPDKVYKEIRL 181

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             ASLR+DA+ SAGFKLSRS+   LI      VNW  + K    +  GD++S+ GKGR+ 
Sbjct: 182 NVASLRLDAIVSAGFKLSRSEAHVLIQKQRCSVNWEVIDKPSNEVSCGDLISIRGKGRMI 241

Query: 303 IGEIN-STRKGKFAVEL 318
           +  I  +TR G+ +++L
Sbjct: 242 VENIEGTTRSGRTSIKL 258


>gi|158320443|ref|YP_001512950.1| RNA-binding S4 domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140642|gb|ABW18954.1| RNA-binding S4 domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 262

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 17/252 (6%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           D ++ +G KN + +   IL+     S + E+  +DFL P  +  +   L  + D++ V  
Sbjct: 9   DHIQDLGLKNTMLK---ILDRVEAVSKKHEIKTTDFLNPQEIVMACEILHTVRDIQYVVS 65

Query: 127 GGYPQAERCRLSVGHPEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           GGY +AER  +++  PE L       P  +A   I G   F+  +H D+LG+ILG G+ R
Sbjct: 66  GGYDEAERKLITI-FPEYLEGYGVEIP--IAVFEIKGTSQFEKLNHRDYLGAILGLGLKR 122

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EKIGDII+  E  +Q +V   L DY+  +L KVGNVSV    + +  +   PP+ + +K 
Sbjct: 123 EKIGDIIVHNEI-SQVIVHESLKDYIFYNLNKVGNVSVKIKELEISDI--IPPKIE-YKE 178

Query: 243 IE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           I    +SLR+DA+ S  +K+SRS+   LIS   V VNW   TK+   +  G+I+SV GKG
Sbjct: 179 IRGNVSSLRLDAILSLAYKISRSEAQELISKERVSVNWKNTTKSAQDVTEGNIISVKGKG 238

Query: 300 RIKIGEINSTRK 311
           R+KI  I    K
Sbjct: 239 RVKIAAIEGKTK 250


>gi|87123642|ref|ZP_01079492.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
 gi|86168211|gb|EAQ69468.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
          Length = 264

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 140/259 (54%), Gaps = 10/259 (3%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LL+G   +   E+++ +L+ A       +   S FL  P+ +E+      L ++    +
Sbjct: 6   ELLQGARHR---EDLERLLDQAEAVLRTWQPQWSPFLEAPLQEEAFDRFSSLTELSWQRE 62

Query: 127 GGYPQAERCRLSVGH------PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
           GGYP AERCRL          P + T +P  +  L++ GNF F P    D   ++   G 
Sbjct: 63  GGYPGAERCRLLCQRRDPDLDPSSETQEPAPIVGLTVEGNFLFDPIVPADIRRALAPLGA 122

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KS 239
           A E++GD+ ++G++GAQ L  PE AD L     ++ +V + C  +P+  L+    R  K 
Sbjct: 123 APEQLGDVWIRGDRGAQLLCTPEAADRLNGRKGRLRDVEIHCETVPIDGLQLPVRRAIKR 182

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           F ++EAS R+DA+ASAGF LSRSK+   I +G +R+NW  + +    L+ GD + +  +G
Sbjct: 183 FSSVEASCRLDAIASAGFGLSRSKVSQEIRSGQLRLNWEPIRQASRELKVGDRLQLQNRG 242

Query: 300 RIKIGEINSTRKGKFAVEL 318
            +++  +  T++ ++ V +
Sbjct: 243 SVEVLSLTLTKRERWRVAM 261


>gi|412992974|emb|CCO16507.1| RNA-binding S4 [Bathycoccus prasinos]
          Length = 340

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 143/276 (51%), Gaps = 38/276 (13%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCR 136
           ++V   LE A+RA        +DF +PP+      A++K      V    GG+  AE+ R
Sbjct: 69  KDVTRALEQAKRAEKVWSCEITDFYSPPLCDWIEAAVKKNFGEAIVCNRFGGFSGAEQQR 128

Query: 137 LSVGH-------------PEALTSDPD---------IVAALSITGNFGFQPCSHGDFLGS 174
           + +                E   ++ D          +A ++I+G F F P SH DFLG+
Sbjct: 129 VLLARRDNSEELFELAKKDEFFANEEDEGEVDTNNCAIACVNISGKFAFDPASHPDFLGA 188

Query: 175 ILGTGIAREKIGDIILQG--EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE- 231
           +L  G+ REKIGDI++    E GA+ L  P +A +L  +LE V  V V+    PL  LE 
Sbjct: 189 VLNAGVKREKIGDILVNNSSEGGAKVLATPAIAVFLTRALESVRTVKVTVELFPLSELEG 248

Query: 232 ------YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGT 285
                  EP RT      EASLR+DA+ASAGF+ +RSK+   I  G+V++N+    K   
Sbjct: 249 AQGAQVQEPVRT-----YEASLRLDAVASAGFRCARSKMGEDIVKGNVKLNYNVCEKKNA 303

Query: 286 TLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 321
           T+  GD++S  G+GR+++ EI   +  ++ +EL++Y
Sbjct: 304 TVGQGDMISCRGRGRVEVKEILEQQNDRYRIELVRY 339


>gi|78043754|ref|YP_360858.1| S4 domain-containing protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995869|gb|ABB14768.1| S4 domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 246

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 128/233 (54%), Gaps = 3/233 (1%)

Query: 92  SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 151
           +++ +++ +DFL P     +   L    +V     GGYP AE+ R +         D ++
Sbjct: 15  AAKGQIVLTDFLDPAAASLTRDLLRNYPEVNYKVDGGYPNAEKVRFAFYPIYVFPEDVEL 74

Query: 152 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
            +  + ITGNF FQ  +H DFLG+ILGTGI REK+GD+IL    G Q +V  +L  YLI 
Sbjct: 75  NLGFIEITGNFKFQAVTHRDFLGAILGTGIKREKVGDLILI-PNGCQVVVDRDLVPYLIQ 133

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
            L+KV  V V+   I    L     +T+       SLR+D++ ++GF +SRS++V  I  
Sbjct: 134 QLDKVHRVGVTVKEIVREELLLPEAKTREVVAFVKSLRLDSVGASGFGISRSQMVKEIEG 193

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAVELIQYL 322
             VRVNW    K    +  GD++S+ G+GR+++ EI    K G+  V L +YL
Sbjct: 194 QKVRVNWKLQVKPSYEVAPGDVISLRGRGRVEVLEIAGVSKSGRNKVILRRYL 246


>gi|33240887|ref|NP_875829.1| RNA-binding protein [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238416|gb|AAQ00482.1| RNA-binding protein, contains S4-like domain [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 262

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 4/227 (1%)

Query: 98  LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDI-VAA 154
           + + FL+ PV +E     +++AD+   + GGYP AER R  L     E   +D ++ + A
Sbjct: 35  IWTSFLSAPVQEEIKNVFKEIADISYSSNGGYPNAERKRILLQRQQNETFLNDENVPIKA 94

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
           + I GNF F      DF  SI  TG+  E+IGD+ + G++GAQ +  PE    L  +   
Sbjct: 95  IKIEGNFLFDRTEPEDFRQSIAETGVKAEEIGDLWITGDRGAQAMCTPEALKLLQNNQGF 154

Query: 215 VGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           + +V +    I L  L     R  K   ++EAS R+DA+ASAGF +SR+K+++ I  G V
Sbjct: 155 IRDVEIKYKSIDLTDLRIPFQRNPKKITSVEASKRLDAIASAGFGISRAKIISQIREGRV 214

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 320
           R+NW T+      L  GD V + GKG I++  +  T+K ++ VELI+
Sbjct: 215 RLNWHTINNASRALTIGDRVDLEGKGSIEVLNLEITKKDRWRVELIR 261


>gi|342214853|ref|ZP_08707524.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
 gi|341590384|gb|EGS33627.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
          Length = 261

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 139/245 (56%), Gaps = 2/245 (0%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           EE + ++++A +  + R    +DF++P  L  +         +  ++ GGY  AER R++
Sbjct: 18  EEARRMIDLAEQVQAGRPYRVTDFMSPAGLVIADAVKANFGGINIISSGGYEGAERLRVA 77

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
              P    +    +A L ++ +  F+  +H D LGS++G GI R   GDII+    GAQ 
Sbjct: 78  FVDPHFQGTVDLQIAVLKVSWDPRFRLLTHRDVLGSLMGLGIDRTHFGDIIVT-SGGAQV 136

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V   + D++I +  K+  V+V+ +R+ L  L+ +  + K  +T  AS+R+D++AS+GF 
Sbjct: 137 IVDATITDFVIQNFTKIAMVTVTVSRMELSELQPKEEKIKEVRTTVASMRLDSIASSGFS 196

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVE 317
            SR+K+V  I  G V+VNW +       ++ GDI+S+ G+GR++I  I  T +KG+  V 
Sbjct: 197 TSRTKVVEAIKAGLVQVNWQSAKGPAQEVKEGDIISLRGRGRMQIESITGTSKKGRIGVH 256

Query: 318 LIQYL 322
           L +++
Sbjct: 257 LKRFM 261


>gi|427413804|ref|ZP_18903995.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
           ACS-216-V-Col6b]
 gi|425715127|gb|EKU78121.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
           ACS-216-V-Col6b]
          Length = 261

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 147/248 (59%), Gaps = 8/248 (3%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +  + +    ++F++P   V+ +++ A   L  +K    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVAGKPYRVTEFMSPAGLVIADAIKA--NLPQLKVEFGGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           ++    +    + D+ + AL ++ +  F+  +H D LGS++G GI R   GDII+Q   G
Sbjct: 76  VAFVEAD-FQGNVDLGIKALKVSWDPRFRLLTHRDVLGSLMGLGIERTNFGDIIMQ-TGG 133

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
           AQ +V   +ADY+  +  K+  VSVS   + +  ++ +  + K  +T  ASLR+DA+AS+
Sbjct: 134 AQLIVDAAMADYVKQNFTKIAMVSVSVEDMDISEIQPKEEKIKEIRTTVASLRLDAVASS 193

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKF 314
           GF +SR+K+V+ I+ G V+VNW         ++ GDI+S+ G+GR+KI EI  T RKG+ 
Sbjct: 194 GFSVSRTKVVSSINAGLVQVNWQPAKGPAQEVKEGDIISLRGRGRMKIEEITGTSRKGRI 253

Query: 315 AVELIQYL 322
            V L +++
Sbjct: 254 GVYLKRFM 261


>gi|385799637|ref|YP_005836041.1| RNA-binding S4 domain-containing protein [Halanaerobium praevalens
           DSM 2228]
 gi|309389001|gb|ADO76881.1| RNA-binding S4 domain protein [Halanaerobium praevalens DSM 2228]
          Length = 262

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
           HIL+   +     +   SDFL P  +K ++  +E+LAD+    +GGY  AER RL V  P
Sbjct: 22  HILDKCAQVLKYHKTQASDFLNPYQMKIAIPLVEQLADINFKKEGGYQAAERKRLVV-FP 80

Query: 143 EALTSDPDIVAA----LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           E L   PD+V        + GNF FQ  SH DFLG+++G G+ R+ IGD+++  +  AQ 
Sbjct: 81  EYLF--PDLVEKQIKIYQLAGNFAFQKLSHRDFLGALMGLGLKRKLIGDLLVHTD-FAQI 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V  E+ D +   LEKV  V +    I    L       K   T  AS+R+DA+AS+GF 
Sbjct: 138 IVAAEIEDIIELKLEKVHQVPIKIKEIDESQLVSPTRYEKEILTTVASMRLDAVASSGFG 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            SR+K+   I +  V++NW   T     +  GD++SV G+GR+K+
Sbjct: 198 DSRTKMARDIESEKVKLNWKVETDPAAEVEIGDLISVRGRGRVKV 242


>gi|116071266|ref|ZP_01468535.1| RNA-binding S4 [Synechococcus sp. BL107]
 gi|116066671|gb|EAU72428.1| RNA-binding S4 [Synechococcus sp. BL107]
          Length = 261

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           D+LL G  D    E +K ++++A +     +   S FL   + +E++  L  L+++    
Sbjct: 6   DELLAGAEDP---EGLKRLIQLADQVVRTWQPAWSPFLGARLQEEALARLNNLSEIGWHR 62

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GGYP AERCRL + H      + D  A    L I GNF F P S  D   ++   G A 
Sbjct: 63  DGGYPGAERCRL-LCHRRDQMGEADACAPAYGLLIEGNFLFDPLSPQDIRNALQELGAAP 121

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFK 241
           ++IGD+ ++G++G Q L  PE A  L     +V +V + C  + + AL     RT +  +
Sbjct: 122 DQIGDLWVRGDRGGQGLCTPESAAQLHEQCGRVRDVDIRCEALAIEALHLPAQRTPRILQ 181

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
           T+EAS R+DA+ASAGF LSR+K+V  I  G +R+NW  V +    L  GD + +  +G +
Sbjct: 182 TVEASCRIDAIASAGFGLSRAKIVGHIKAGRLRMNWHDVRQASRELGVGDRLQLQDRGAL 241

Query: 302 KIGEINSTRKGKFAVEL 318
           ++  +  T++ ++ VEL
Sbjct: 242 EVLSLTRTKRERWRVEL 258


>gi|294792855|ref|ZP_06758002.1| S4 domain protein [Veillonella sp. 6_1_27]
 gi|294456754|gb|EFG25117.1| S4 domain protein [Veillonella sp. 6_1_27]
          Length = 261

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +    R    +DF +P   V+ +++ A      VK    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++    +   +    + AL +  +  F+  +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76  IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V   +AD++I +  K+  VSVS   I L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ I+ G ++VNW         ++ GD++S+ G+GRIK+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAINAGLLQVNWQPAKGASQEVKEGDVISMRGRGRIKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|333978627|ref|YP_004516572.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
           kuznetsovii DSM 6115]
 gi|333822108|gb|AEG14771.1| RNA-binding S4 domain protein [Desulfotomaculum kuznetsovii DSM
           6115]
          Length = 262

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 9/260 (3%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LL     ++  E +  + ++ ++    R+   +DFL P      +MALE++ D+ A + G
Sbjct: 7   LLYRAKTQDEKEMLSRVYDLVQQVLRARQPRVTDFLDPYHAGLVLMALERVPDLAARSDG 66

Query: 128 GYPQAERCRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           GYP AER R+ + +P+ L  DP      +A LSI G+F  Q  SH DFLG++L  G+ RE
Sbjct: 67  GYPGAERVRILI-YPDYL--DPREEDWQLAFLSIQGSFEEQEPSHRDFLGALLALGLRRE 123

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           KIGDI+L  ++ AQ +V  E+A ++ + L +VG +SV+  RI    L   P R +  K  
Sbjct: 124 KIGDILLHNDQ-AQVVVAGEIAPFIQSQLARVGRISVTVHRISREQLCSPPRRVREIKAT 182

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
             SLR+D +A+AGF  SR+++   I+   V +NW   ++   T+R GDI+S  G+GR+++
Sbjct: 183 VPSLRLDVVAAAGFGTSRTRMAREITAQRVSLNWQVCSELSHTVREGDIISARGRGRVQV 242

Query: 304 GEIN-STRKGKFAVELIQYL 322
             +  +T+ G+ A+ L +Y+
Sbjct: 243 TRVTGTTKSGRLALILHRYV 262


>gi|294794611|ref|ZP_06759747.1| S4 domain protein [Veillonella sp. 3_1_44]
 gi|294454941|gb|EFG23314.1| S4 domain protein [Veillonella sp. 3_1_44]
          Length = 261

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +    R    +DF +P   V+ +++ A      VK    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++    +   +    + AL +  +  F+  +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76  IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V   +AD++I +  K+  VSVS   I L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVETIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ I+ G ++VNW         ++ GD++S+ G+GR+K+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAINAGLLQVNWQPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|269798485|ref|YP_003312385.1| RNA-binding S4 domain-containing protein [Veillonella parvula DSM
           2008]
 gi|282849929|ref|ZP_06259312.1| S4 domain protein [Veillonella parvula ATCC 17745]
 gi|269095114|gb|ACZ25105.1| RNA-binding S4 domain protein [Veillonella parvula DSM 2008]
 gi|282580366|gb|EFB85766.1| S4 domain protein [Veillonella parvula ATCC 17745]
          Length = 261

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +    R    +DF +P   V+ +++ A      VK    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++    +   +    + AL +  +  F+  +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76  IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V   +AD++I +  K+  VSVS   I L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ I+ G ++VNW         ++ GD++S+ G+GR+K+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAINAGLLQVNWQPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|254430233|ref|ZP_05043936.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
 gi|197624686|gb|EDY37245.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
          Length = 261

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 147/258 (56%), Gaps = 11/258 (4%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL G    + + EV   +E A RA    +   + FL   VL+E+M  L +LA+++  A 
Sbjct: 6   DLLAGSRHPDQLVEV---IEAAERALHTWQPQWTGFLEGAVLEEAMARLGQLAELELRAA 62

Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFG--FQPCSHGDFLGSILGTGIARE 183
           GG+  AERCRL +   EA L  +P     L +  +    F P    +F  +++  G A  
Sbjct: 63  GGHAGAERCRLLLTRREAGLDPEPLDTGLLGLLLSGNFLFDPAEPDEFRSALIQQGWADG 122

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP---RTKSF 240
            IGD+ L+G++GAQ +VV + A+        V +V V+   +PL  L+  PP   + +  
Sbjct: 123 AIGDVWLRGDRGAQAIVVAKAAEPTAALTLTVRSVPVTGELVPLALLQ--PPARRQPRQL 180

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
            T+EAS R+DA+ASAGF +SR+++V LI +G VR+NW   ++ G  L+ GD V +SG+G 
Sbjct: 181 HTVEASTRLDAVASAGFGISRNRMVTLIRDGAVRLNWVVASRPGQELQAGDRVQLSGRGE 240

Query: 301 IKIGEINSTRKGKFAVEL 318
           +++  I +T++ ++ +EL
Sbjct: 241 LEVRAITATKRERWRIEL 258


>gi|238018691|ref|ZP_04599117.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
 gi|237865162|gb|EEP66452.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
          Length = 261

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +    R    +DF +P   V+ +++ A      VK    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++    +   +    + AL +  +  F+  +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76  IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   +AD++I +  K+  VSVS   I L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QILVDESVADFVIQNFTKIAMVSVSVEAIDLSDIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ I+ G ++VNW         ++ GD++S+ G+GR+K+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAINAGLLQVNWQPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|421860332|ref|ZP_16292463.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
           14706]
 gi|410830080|dbj|GAC42900.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
           14706]
          Length = 262

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 4/239 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V    E  RRAS   EV  +DFL P     +   + +  DV+    GG+ QAER R  V 
Sbjct: 19  VDRAWEWVRRASEGHEVKRTDFLDPRQAYITATLVNRCRDVQLRLDGGFAQAERKRALVA 78

Query: 141 HPEALTSDPDI-VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
                    D+ ++ L IT  +  +    HGDFLG++LG GI REKIGDI +  ++    
Sbjct: 79  PDYVYAEGEDVGISVLQITAPDRKWDELEHGDFLGALLGLGIKREKIGDIHISTDR-CHV 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           LV  E+A ++ T L +V  VSV    +PL  L+      K+ K   ASLR+D +AS  F+
Sbjct: 138 LVTEEMAPFVNTHLRQVHRVSVLTDILPLSELQAVEAEMKTAKLSVASLRLDGMASDVFR 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           LSR+K+V  I  G  ++NW         LR GD+VS+ G GR K+ ++   T++G++ V
Sbjct: 198 LSRTKIVAPIRAGRCKINWKVEENPSVLLRAGDVVSLQGCGRFKVIDVEGLTKRGRYWV 256


>gi|113953560|ref|YP_731456.1| S4 domain-containing protein [Synechococcus sp. CC9311]
 gi|113880911|gb|ABI45869.1| S4 domain protein [Synechococcus sp. CC9311]
          Length = 259

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 142/256 (55%), Gaps = 13/256 (5%)

Query: 75  KNAIEEVKHILEMARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGG 128
           +N +   +H   MA       +VL       S FL+  +L+++   LE LA++K    GG
Sbjct: 6   ENLLRSCRHPTTMAALIDLAEDVLRTWQPRWSPFLSALMLEDANQ-LESLAELKISRDGG 64

Query: 129 YPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           YP AER RL + H  A + DP+    +A L++ GNF F P S  +   ++   G+A E +
Sbjct: 65  YPGAERKRLLIQH--AASPDPEPHCPLAGLNVEGNFLFDPTSPDEMRLALHRIGVADESL 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIE 244
           GD+ ++G++GAQ +  PE A  L      +  V ++C  +PL  L++   R  +   ++E
Sbjct: 123 GDLWIRGDRGAQAICTPEAAAVLQGQQGSLREVIITCESLPLEGLQWPVQRVARRLSSVE 182

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           AS R+DA+ASAGF +SRSK+V  I  G +R+NW  V      L+ GD + +  +G I++ 
Sbjct: 183 ASCRLDAIASAGFGISRSKVVKQIKEGRLRLNWEPVRLASRDLKVGDRLQLQDRGSIEVM 242

Query: 305 EINSTRKGKFAVELIQ 320
            I  T++ ++ V++++
Sbjct: 243 NIERTKRERWRVDILR 258


>gi|313892887|ref|ZP_07826464.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442240|gb|EFR60655.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
          Length = 261

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +    R    +DF +P   V+ +++ A      VK    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++    +   +    + AL +  +  F+  +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76  IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V   +AD++I +  K+  VSVS   I L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ I+ G ++VNW         ++ GD++S+ G+GR+K+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAINAGLLQVNWQPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|134298583|ref|YP_001112079.1| RNA-binding S4 domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051283|gb|ABO49254.1| RNA-binding S4 domain protein [Desulfotomaculum reducens MI-1]
          Length = 255

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 127/212 (59%), Gaps = 7/212 (3%)

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTS---DPDIVAALSITGNFGFQPCSHGDF 171
           LE++ D+   + GGY  +ER R +V  P+ L     D +I   L++ GNF     +H DF
Sbjct: 47  LERIQDIDFASYGGYDLSERVR-TVIFPDYLEGEVFDYEI-TLLAVEGNFKMVKVNHRDF 104

Query: 172 LGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE 231
           LGS+LG GI RE +GD+I+  +KG Q +V  E+A YL+ +L KV  V V    I    L+
Sbjct: 105 LGSLLGLGIKREMVGDLIVS-DKGCQVMVAREIAPYLMANLTKVHKVRVEVREICPEELK 163

Query: 232 YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD 291
               + K  KT  ASLR+D +A+AGF  SRS++   I    + +NW + +    ++++GD
Sbjct: 164 LPELKVKEIKTTVASLRLDTVAAAGFGTSRSRIAREIQAERLNLNWHSCSDVAASVKSGD 223

Query: 292 IVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
           ++S+ G+GR++I E+  +T+ G+ ++ L +YL
Sbjct: 224 MLSIRGRGRVEIAEVKGNTKSGRISIVLKRYL 255


>gi|416998514|ref|ZP_11939275.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
 gi|333977412|gb|EGL78270.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
          Length = 261

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
           EE + +L++A +    R    +DF +P   V+ +++ A      VK    GGY  AER R
Sbjct: 18  EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++    +   +    + AL +  +  F+  +H D LGS++G GI R K GD+I+Q + GA
Sbjct: 76  IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V   +AD++I +  K+  VSVS   I L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QIMVDESVADFVIQNFTKIAMVSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
           F +SR+KLV+ I+ G ++VNW         ++ GD++S+ G+GR+K+  I   +RKG+  
Sbjct: 195 FSVSRTKLVSAINAGLLQVNWQPAKGASQEVKEGDVISMRGRGRMKVEAITGISRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|329121439|ref|ZP_08250063.1| S4 domain protein [Dialister micraerophilus DSM 19965]
 gi|327469354|gb|EGF14824.1| S4 domain protein [Dialister micraerophilus DSM 19965]
          Length = 263

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 136/242 (56%), Gaps = 3/242 (1%)

Query: 73  GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
           GD+ A E    ++++A      R    S F++P  ++        +  V +   GGY +A
Sbjct: 15  GDE-AKEMAIRLVDLAESVERGRPFTVSSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEA 73

Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
           ER +++    +        ++ LS+T +  F+   H D LGS++G GI RE +GDI++QG
Sbjct: 74  ERVKVAFQSNDYGGKVNYEISLLSVTWDDRFRLIGHRDVLGSLMGLGIEREVLGDILMQG 133

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
            + AQ LV  ++++Y+ ++  KV  V V    IPL  L+    + K  + + AS+R+DA+
Sbjct: 134 AQ-AQILVDGKMSEYIKSNFTKVAMVPVQVEEIPLEELKVPEQKAKEIRAMVASMRLDAV 192

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRK 311
            +AGF LSR+K+V +I    V+VNW +      T++  DI+S+ GKGRI+I EI   +RK
Sbjct: 193 GAAGFGLSRTKMVQMIDGDRVQVNWQSAKSVSQTVKVKDIISIRGKGRIEIEEITGKSRK 252

Query: 312 GK 313
           G+
Sbjct: 253 GR 254


>gi|313891380|ref|ZP_07824996.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
 gi|313120155|gb|EFR43331.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
          Length = 263

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 136/242 (56%), Gaps = 3/242 (1%)

Query: 73  GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
           GD+ A E    ++++A      R    S F++P  ++        +  V +   GGY +A
Sbjct: 15  GDE-AKEMAIRLVDLAESVERGRPFTVSSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEA 73

Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
           ER +++    +        ++ LS+T +  F+   H D LGS++G GI RE +GDI++QG
Sbjct: 74  ERVKVAFQSNDYGGKVNYEISLLSVTWDDRFRLIGHRDVLGSLMGLGIEREVLGDILMQG 133

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
            + AQ LV  ++++Y+ ++  KV  V V    IPL  L+    + K  + + AS+R+DA+
Sbjct: 134 TQ-AQILVDGKMSEYIKSNFTKVAMVPVQVEEIPLEELKVPEQKAKEIRAMVASMRLDAV 192

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRK 311
            +AGF LSR+K+V +I    V+VNW +      T++  DI+S+ GKGRI+I EI   +RK
Sbjct: 193 GAAGFGLSRTKMVQMIDGDRVQVNWQSAKSVSQTVKVKDIISIRGKGRIEIEEITGKSRK 252

Query: 312 GK 313
           G+
Sbjct: 253 GR 254


>gi|20808026|ref|NP_623197.1| hypothetical protein TTE1597 [Thermoanaerobacter tengcongensis MB4]
 gi|20516604|gb|AAM24801.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 248

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 18/233 (7%)

Query: 99  HSDFLTPPVLKESMMALEKLA------DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI- 151
           ++DFLT    K+     EKLA       VK + +GGYP AER ++++ +P+ LT   +  
Sbjct: 25  YTDFLTLSEQKQ----FEKLALKYKSEGVKYLLEGGYPSAER-KIAIVYPDFLTFREEEL 79

Query: 152 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
            + AL + G   F   SH + LGSILG GI REK+GDII++ E     ++  E+ D+L+ 
Sbjct: 80  PIVALRVEGKNRF---SHREVLGSILGLGIKREKVGDIIVK-ESKCDVILKEEMRDFLLF 135

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           +L K+G  SV    I L  +     + K   +  ASLRVD++A++GF +SR+K   LI +
Sbjct: 136 NLTKIGRESVEVHEIELSDVMQPEIKYKDIFSTVASLRVDSVAASGFGISRTKASELIKS 195

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
           G +RVNW  V      +  GD++S+ G GRIK+ EI  +T+KG+ ++ +++YL
Sbjct: 196 GLLRVNWEAVEDPSFHVGEGDVISLRGFGRIKLQEIKGNTKKGRISIHILRYL 248


>gi|304404028|ref|ZP_07385690.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304347006|gb|EFM12838.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 262

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 128/242 (52%), Gaps = 4/242 (1%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           + E   R S R E   +D+L P   +       +  +V     GGY +AER R  +    
Sbjct: 22  VEEWIERCSERHEWKRTDYLDPRQAEIVRALASRNGEVAIRFDGGYEEAERQRAVIAPDY 81

Query: 144 ALTSD-PDIVAALSITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
           A+  D P  V A+++T +  G     HGD+LG++LG G+ RE IGDI +  E G   +V 
Sbjct: 82  AVLDDEPMGVQAIAVTADSQGHLDLDHGDYLGALLGLGVKRELIGDIHVH-EDGCHCMVT 140

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            E+ADY+   L +V  V V    IPL AL     + +      ASLR+D +AS  ++LSR
Sbjct: 141 EEIADYVNIHLRQVHRVHVLTELIPLSALRVVKSKLEEMSLSVASLRLDGVASDVYRLSR 200

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQ 320
           +K+V+ I  G  RVNW         L+ GD+VS+ G GR K+ E+   T+KG+F V + +
Sbjct: 201 AKIVDPIRAGRCRVNWKAEENPSALLKAGDVVSMKGLGRFKVLEVEGVTKKGRFRVSIGK 260

Query: 321 YL 322
           Y+
Sbjct: 261 YI 262


>gi|33863700|ref|NP_895260.1| hypothetical protein PMT1433 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635283|emb|CAE21608.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 263

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 12/262 (4%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LLKG  D   +E    +L  A       +   S F++ P+ +E++     L D+   A 
Sbjct: 7   ELLKGCLDPQGMEA---LLVQADTVLRTWQPSWSAFVSAPLREEALHRFSTLTDLHWHAD 63

Query: 127 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           GG+P AER RL    S  H     S    +  L + GNF F   S  D   ++       
Sbjct: 64  GGHPGAERQRLCCWRSEDHHHPTPSQAAPIHGLLLHGNFLFDSPSPTDLRQALEAIDAQP 123

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR---TKS 239
           E++GD+ ++G++GAQ L  PELA  L     +V  V ++C  + +  L+  PP    T+ 
Sbjct: 124 EQLGDLWIRGDRGAQALCTPELAVNLDGRSSRVREVEITCEAVAVAQLQ--PPAHRLTRR 181

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
             ++EAS R+DA+ASAGF LSR+K+VN I  G +R+NW  V +    L  GD + + G+G
Sbjct: 182 LNSVEASCRIDAIASAGFGLSRAKVVNQIKQGHLRLNWEPVRQTSRELVVGDRLQLQGRG 241

Query: 300 RIKIGEINSTRKGKFAVELIQY 321
            +K+  +  T++ ++ VE++++
Sbjct: 242 TLKVLALEMTKRQRWRVEMLRH 263


>gi|323702137|ref|ZP_08113804.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|333924457|ref|YP_004498037.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
           carboxydivorans CO-1-SRB]
 gi|323532824|gb|EGB22696.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
           574]
 gi|333750018|gb|AEF95125.1| RNA-binding S4 domain protein [Desulfotomaculum carboxydivorans
           CO-1-SRB]
          Length = 263

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 5/211 (2%)

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFL 172
           LE++ D+     GGYP AER R+++  P+ L  SD +  +  L++ GNF     +H DFL
Sbjct: 55  LERIPDLDFATGGGYPAAERVRVAI-FPDYLDASDINFDLMLLAVEGNFKMVKVTHRDFL 113

Query: 173 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 232
           GSILG GI RE IGD+I+  EKG Q +   E+A YL+T+L KV  V V+   I     + 
Sbjct: 114 GSILGLGIKREMIGDVIVT-EKGCQVVAAREVASYLMTNLTKVHRVGVAVREIAPEEWQM 172

Query: 233 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 292
                K  K+  ASLR+DA+A+ GF  SR+++   I+   + +NW   +     ++ GDI
Sbjct: 173 PEVTVKEIKSTVASLRLDAVAAVGFGTSRTRIAREITAERLNLNWHPCSDVSAPVKPGDI 232

Query: 293 VSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
           +S+ G+GR+++ E+  +T+ G+  + + ++L
Sbjct: 233 LSIRGRGRVEVAEVKENTKSGRIGIVIKRFL 263


>gi|323140386|ref|ZP_08075316.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
 gi|322415142|gb|EFY05931.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
          Length = 261

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 134/241 (55%), Gaps = 4/241 (1%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +L++A  A+  R+   S+FL P     + +      +V+  + GG+  AER + +    +
Sbjct: 23  LLDLAEGANKSRKFRVSEFLDPHAYNVAEIIAANYENVRLESDGGFSNAERVKAAF-VAD 81

Query: 144 ALTSDPDIVAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
                PD   A  +   +  +   SH D LG+ +GTG  RE +GDI+   E GAQF+V  
Sbjct: 82  DFYGQPDFGMAYFLAAWDKRYYDLSHRDILGAFMGTGCKREALGDIVFVPE-GAQFVVEK 140

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
            L +YL  +L ++G+  V+ T IP   L ++  + K      A LR+DA+A+AG+ +SRS
Sbjct: 141 SLVNYLTGNLTQIGSAPVTLTEIPREELLHKEEKVKLINATVADLRLDAVAAAGYGVSRS 200

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQY 321
           ++ + I + +V+VNW    K    +  GD++S  G+GR++I EI  +T+KG+ +V L +Y
Sbjct: 201 RMADEIKSLNVKVNWKEAKKAAQPVNEGDVISFRGRGRVEIEEIRGTTKKGRISVTLKRY 260

Query: 322 L 322
           +
Sbjct: 261 I 261


>gi|124022232|ref|YP_001016539.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
           9303]
 gi|123962518|gb|ABM77274.1| Uncharacterized conserved protein, contains S4-like domain
           [Prochlorococcus marinus str. MIT 9303]
          Length = 295

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 138/262 (52%), Gaps = 12/262 (4%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LLKG  D   +E    +L  A       +   S F++ P+ ++++     L D+   A 
Sbjct: 39  ELLKGCLDPQGMEA---LLVQADSVLRTWQPSWSAFVSAPLREQALHRFATLTDLHWHAD 95

Query: 127 GGYPQAERCRLSVG------HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
           GG+P AER RL         HP    + P  +  L + GNF F   S  D   ++     
Sbjct: 96  GGHPGAERQRLCCSRCEDHHHPTPSQAAP--IHGLLLHGNFLFDSPSPTDLRQALEAIDT 153

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKS 239
             E++GD+ ++G++GAQ L  PELA  L     KV  V ++C  + +  L+    R T+ 
Sbjct: 154 RPEQLGDLWIRGDRGAQALCTPELAVNLDGRSSKVREVEITCEAVAVTQLQPPAHRLTRR 213

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
             ++EAS R+DA+ASAGF LSR+K+VN I  G +R+NW  V +    L  GD + + G+G
Sbjct: 214 LNSVEASCRIDAIASAGFGLSRAKVVNQIKQGHLRLNWEPVRQTSRELVVGDRLQLQGRG 273

Query: 300 RIKIGEINSTRKGKFAVELIQY 321
            +K+  +  T++ ++ VE++++
Sbjct: 274 TLKVLALEMTKRQRWRVEMLRH 295


>gi|78184102|ref|YP_376537.1| RNA-binding S4 [Synechococcus sp. CC9902]
 gi|78168396|gb|ABB25493.1| RNA-binding S4 [Synechococcus sp. CC9902]
          Length = 261

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LL G  D   +   + ++++A +     +   S FL   + +E++  L  L+++    
Sbjct: 6   EELLTGADDPAGL---RQLIQLADQVVRTWQPAWSPFLDARLQEEALERLSNLSEIGWHR 62

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GGYP AERCR      + +  D D  A    L I GNF F P S  D   ++   G A 
Sbjct: 63  DGGYPGAERCRFLCQRRDPI-GDADTCAPVQGLLIEGNFLFDPLSPEDIRNALQELGAAP 121

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFK 241
           ++IGD+ ++G++G Q L  PE A  L     +V +V + C  +P+ AL     RT +  +
Sbjct: 122 DQIGDLWVRGDRGGQGLCTPESAARLHEQRGRVRDVEIRCEALPIEALHLPAQRTPRILQ 181

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
           T+EAS R+DA+ASAGF LSR+K+V  I  G +RVNW  V      +  GD + +  +G +
Sbjct: 182 TVEASCRIDAIASAGFGLSRAKIVGHIKAGRLRVNWHDVRLASRDVGVGDRLQLQDRGAL 241

Query: 302 KIGEINSTRKGKFAVEL 318
           ++  +  T++ ++ VEL
Sbjct: 242 EVLSLTRTKRERWRVEL 258


>gi|116073646|ref|ZP_01470908.1| RNA-binding S4 [Synechococcus sp. RS9916]
 gi|116068951|gb|EAU74703.1| RNA-binding S4 [Synechococcus sp. RS9916]
          Length = 263

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 138/256 (53%), Gaps = 8/256 (3%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LL+G  D   ++ +  + +   R     +   S F++ P+ ++++  L  L +++  A G
Sbjct: 8   LLQGSQDPEGLDALIDVADQVLRTW---QPQWSCFVSAPLREDAVQRLAVLTELQIHADG 64

Query: 128 GYPQAERCRLSVGHPEALT----SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           G P+AER RL +   E  T      P  V  L + GNF F P    D   +IL  GI   
Sbjct: 65  GRPEAERQRLLISRCEGGTVPQEEHPLPVMGLEVEGNFLFDPVDPHDMRAAILELGIEAG 124

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKT 242
            +GD+ ++G++GAQ L  PE A  L     +V +V +     P+ +L+    R  K F +
Sbjct: 125 HLGDLWIRGDRGAQLLCTPEAAVALHGRSGRVRDVDIQLEERPVASLQLPQSRVPKRFAS 184

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EAS R+DA+ASAGF LSR+K+V+ I +G +R+NW +V +    LR GD + +  +G ++
Sbjct: 185 VEASCRLDAIASAGFGLSRAKVVDQIRSGRLRLNWQSVRQASKDLRVGDRLQLQDRGSVE 244

Query: 303 IGEINSTRKGKFAVEL 318
           +  +  T+K ++ V +
Sbjct: 245 VLALERTKKDRWRVHM 260


>gi|352095856|ref|ZP_08956803.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
 gi|351677212|gb|EHA60361.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
          Length = 242

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 3/223 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           S FL+  +L+++   L  LA++K    GGYP AER RL + H  +   +P   +A L++ 
Sbjct: 20  SPFLSALMLEDANQ-LGALAELKISRDGGYPGAERKRLLIQHATSPEPEPPCPLAGLNVE 78

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
           GNF F P S  +   ++ G G+    +GD+ ++G++GAQ +  PE A  L      V  V
Sbjct: 79  GNFLFDPTSPDEMRLALQGIGVDEAALGDLWIRGDRGAQAICTPEAAALLQGQRGSVREV 138

Query: 219 SVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            ++C   PL AL++   R  +   ++EAS R+DA+ASAGF +SRSK+V  I +G +R+NW
Sbjct: 139 MIACESWPLEALQWPVQRVARRLSSVEASCRLDAIASAGFGISRSKVVKQIKDGRLRLNW 198

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 320
             V      L+ GD + +  +G I++  I  T++ ++ V++++
Sbjct: 199 EPVRLASRDLKVGDRLQLQERGSIEVMNIERTKRERWRVDILR 241


>gi|303229252|ref|ZP_07316048.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516107|gb|EFL58053.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 261

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           EE + +L++A +    +     DF +P  L  +        ++   + GGY  AER R++
Sbjct: 18  EEARRMLDLAEQVVKGKPYRVCDFTSPAGLVIADAIKAAYPELLVQSYGGYEGAERIRIA 77

Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
               H +  T D  IV  L ++ +  F+  +H D LGS++G GI R K GDII+ G+ GA
Sbjct: 78  FVDSHFQG-TVDMGIVP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSKFGDIIM-GQGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   +AD+++ +  K+  V+VS T + L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QILVDSAVADFVVQNFTKIAMVAVSVTPMELDEIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ ++ G ++VNW         ++ GDI+S+ G+GR+K+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAVNAGLLQVNWQPAKGPSQEVKEGDIISMRGRGRMKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|374602415|ref|ZP_09675408.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
           C454]
 gi|374392017|gb|EHQ63346.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
           C454]
          Length = 262

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 6/242 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E V    E  RRAS   EV  +DFL P     +   + + +DV+    GG  QAER R  
Sbjct: 17  EFVDRAWEWVRRASEGHEVKRTDFLDPRQAYIAATLVNRSSDVQLRLDGGSEQAERKRAL 76

Query: 139 VGHPEALTSDPDI--VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +  P+ + +D +   ++ L IT  +  +    HGDFLG++LG GI REKIGDI +  ++ 
Sbjct: 77  IA-PDYVYADGEDMGISVLQITSPDRKWDELEHGDFLGALLGLGIKREKIGDIHVSPDR- 134

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
              LV  E+A ++ T L +V  VSV    +PL  L+      K+ K   ASLR+D +AS 
Sbjct: 135 CHVLVTEEMAPFVNTHLRQVHRVSVLTDILPLSGLQAADAEMKTAKLSVASLRLDGIASD 194

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
            F+LSR+K+V  I  G  +VNW         L  GD+VS+ G GR K+ ++   T+KG++
Sbjct: 195 VFRLSRAKIVAPIKAGRCKVNWKVEENPSAPLEAGDVVSLQGFGRFKVIDVEGLTKKGRY 254

Query: 315 AV 316
            V
Sbjct: 255 WV 256


>gi|303230546|ref|ZP_07317300.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
 gi|401680660|ref|ZP_10812572.1| S4 domain protein [Veillonella sp. ACP1]
 gi|429760793|ref|ZP_19293254.1| S4 domain protein [Veillonella atypica KON]
 gi|302514787|gb|EFL56775.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
 gi|400218325|gb|EJO49208.1| S4 domain protein [Veillonella sp. ACP1]
 gi|429176701|gb|EKY18066.1| S4 domain protein [Veillonella atypica KON]
          Length = 261

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           EE + +L++A +    +     DF +P  L  +        ++   + GGY  AER R++
Sbjct: 18  EEARRMLDLAEQVVKGKPYRVCDFTSPAGLVIADAIKAAYPELLVQSYGGYEGAERIRIA 77

Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
               H +  T D  I+  L ++ +  F+  +H D LGS++G GI R K GDII+ G+ GA
Sbjct: 78  FVDSHFQG-TVDMGIIP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSKFGDIIM-GQGGA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   +AD+++ +  K+  V+VS T + L  +  +  + K  +T  ASLR+DA+AS+G
Sbjct: 135 QILVDSAVADFVVQNFTKIAMVAVSVTPMELDEIAPKEEKIKEVRTTVASLRLDAVASSG 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFA 315
           F +SR+KLV+ ++ G ++VNW         ++ GDI+S+ G+GR+K+  I  T RKG+  
Sbjct: 195 FSVSRTKLVSAVNAGLLQVNWQPAKGPSQEVKEGDIISMRGRGRMKVEAITGTSRKGRIG 254

Query: 316 VELIQYL 322
           V L +++
Sbjct: 255 VYLKRFM 261


>gi|414154543|ref|ZP_11410861.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
           = DSM 18033]
 gi|411453940|emb|CCO08765.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
           = DSM 18033]
          Length = 263

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 140/259 (54%), Gaps = 7/259 (2%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LL  + D+     +  +L+ A +       L ++F  P      +  LE++ D++    G
Sbjct: 8   LLGSIRDQEEKVVIAKVLDDAEKVLKNHRPLLTNFYDPYHTGLIISVLERIPDLEFGTNG 67

Query: 128 GYPQAERCRLSVGHPEALTS---DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GYP AER R+++  P+ L     D D V  L++ GNF     +H DFLGS+LG GI RE 
Sbjct: 68  GYPAAERVRIAI-FPDYLDENEIDYDTVV-LAVEGNFKMVQVTHRDFLGSVLGLGIKREM 125

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GD+++    G Q +   E+A YL T L +V  V V+   I    L     R K  KT  
Sbjct: 126 VGDLLVTN-NGCQVVATREVASYLSTHLTRVHRVRVTVREILPAELVLPEVRVKEIKTTV 184

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+A+AGF  SR++LV  I    + +NW T       +R GDI+S+ G+GR+++ 
Sbjct: 185 ASLRIDAVAAAGFGTSRTRLVREILAEKLSLNWHTCANAAAPVRQGDIISLRGRGRLELA 244

Query: 305 EIN-STRKGKFAVELIQYL 322
           E+  +T+ G+  + + ++L
Sbjct: 245 EVRGNTKSGRIGIVIKRFL 263


>gi|407474154|ref|YP_006788554.1| RNA-binding S4 domain-containing protein [Clostridium acidurici 9a]
 gi|407050662|gb|AFS78707.1| putative RNA-binding S4 domain-containing protein [Clostridium
           acidurici 9a]
          Length = 262

 Score =  133 bits (335), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 138/257 (53%), Gaps = 6/257 (2%)

Query: 63  GNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVK 122
           G+    ++ + DK     ++ IL+         +V ++DFL P   K S   L +L DV 
Sbjct: 3   GDKTKYIEHIQDKEQHIVMRKILDKIESVLRHHDVEYTDFLDPYQRKLSHSILNRL-DVS 61

Query: 123 AVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
              +GG   +ER  + +  PE ++ +   + + A+ I GNF F    H D+LG+ILG GI
Sbjct: 62  YYEEGGLEDSERKSIII-FPEYMSKENIENPIKAIKIEGNFKFTNLRHKDYLGAILGLGI 120

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
            REK+GDI +  E  A  L+  EL D++I +L+ +G  +V+  +I L  +E      +  
Sbjct: 121 KREKVGDINIY-EDFAIILLHKELLDFVIYNLKNIGRENVTVRQISLGEIEKTKEEFEDI 179

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
           +T  +SLR+DAL S    LSRSK  N I+ G V+VNW  +      +   D++S+ G GR
Sbjct: 180 QTTISSLRLDALISGVCNLSRSKSANQIAQGKVKVNWQPILNASYEIGEDDVISIRGFGR 239

Query: 301 IK-IGEINSTRKGKFAV 316
           IK I E+  ++KGK  V
Sbjct: 240 IKIISELGKSKKGKDKV 256


>gi|78213667|ref|YP_382446.1| RNA-binding S4 [Synechococcus sp. CC9605]
 gi|78198126|gb|ABB35891.1| RNA-binding S4 [Synechococcus sp. CC9605]
          Length = 258

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 131/241 (54%), Gaps = 1/241 (0%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           EE+  ++++A +     +   S FL+ P+ +E+M  L  L+++  ++ GGYP AER RL 
Sbjct: 15  EELTLLVDLAEQVLRTWQPAWSPFLSAPLREEAMARLGSLSELTWMSDGGYPGAERQRLL 74

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
               +        +  L I GNF F P S  D   ++   G+  + IGD+ ++G++G Q 
Sbjct: 75  CHRRDDSPDAEPPIQGLLIEGNFLFDPLSPEDLREALQTMGVDADNIGDLWVRGDRGGQG 134

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGF 257
           +  P  A  L   L  V  V + C   PL  L+    R+ ++ +T+EAS R+DA+ASAGF
Sbjct: 135 ICTPSAAKALHGRLGAVREVEIRCESRPLEQLQQPVQRSVRTLQTVEASCRLDAIASAGF 194

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
            LSR+K+V  +  G +R+NW  V +    L  GD + +  +G +++  +  T++ ++ VE
Sbjct: 195 GLSRAKIVTHVKAGRLRLNWGNVRQASRELVVGDRLQLQDRGSVEVLSLTRTKRERWRVE 254

Query: 318 L 318
           L
Sbjct: 255 L 255


>gi|345017880|ref|YP_004820233.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|344033223|gb|AEM78949.1| RNA-binding S4 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 248

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 139/232 (59%), Gaps = 9/232 (3%)

Query: 95  REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
           + V ++DFL+    K  E  +   +  D+     GGYP AER ++++ +P+ L  +   +
Sbjct: 22  KRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAER-KIAIIYPDFLQPEDTPI 80

Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
            A+ I GNF     SH D LGS+LG GI R+KIGDII++ +K    L+  ++  Y++ +L
Sbjct: 81  CAVRIEGNFS--KLSHRDVLGSLLGLGIKRQKIGDIIVKEDK-CDILLHKDVESYVLMNL 137

Query: 213 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
            KVG   V    I L   LE E      F T+ ASLRVD++A+AGF +SR+K   LI++G
Sbjct: 138 FKVGKEKVRVNSIDLKDVLEPEIKYKDIFSTV-ASLRVDSVAAAGFGISRTKASELINSG 196

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
            +++NW       + ++ GD++S+ G GRI++ E+  +T+KG+ +V +++++
Sbjct: 197 LLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248


>gi|312143929|ref|YP_003995375.1| RNA-binding S4 domain-containing protein [Halanaerobium
           hydrogeniformans]
 gi|311904580|gb|ADQ15021.1| RNA-binding S4 domain protein [Halanaerobium hydrogeniformans]
          Length = 262

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
           HIL+ + R     +   SDFL P   K +   +++++D+    +GGY  AER RL +  P
Sbjct: 22  HILDKSERVLKYHKTEASDFLNPYQQKIAEGIVKQISDINFKFEGGYKAAERKRLLI-FP 80

Query: 143 EALTSDPDIV----AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           E L   PD+V    A   I GNF FQ  +H DFLG+++G G+ R+ IGDI++     AQ 
Sbjct: 81  EYLF--PDLVESQIAIFKIKGNFSFQNLTHRDFLGAVMGLGLQRKVIGDILIHS-GFAQL 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +   E+ D +    +KV  V V   +I    +       K   T   S+R+DA+AS+GF 
Sbjct: 138 VTAVEVKDIIELRFDKVHQVPVEVEKISADDIIKPTQYEKEILTTVPSMRLDAVASSGFG 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
            SRSK+   I N +V++NW   +     +  GD++SV G+GR+K+ E
Sbjct: 198 DSRSKMSRSIKNEEVKLNWKIESDPAAEVEIGDLISVRGRGRVKVEE 244


>gi|260436697|ref|ZP_05790667.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
 gi|260414571|gb|EEX07867.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
          Length = 258

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 1/220 (0%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
           S FL+ P+ +E++  L  L+++  ++ GGYP AER RL     +           L I G
Sbjct: 36  SPFLSAPLREEALARLGNLSELTWISDGGYPDAERQRLLCHRRDDSPDSGAPTQGLLIEG 95

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
           NF F P S  D   ++   G+  +KIGD+ ++G++G Q +  P  A+ L   L  V  V 
Sbjct: 96  NFLFDPLSPDDLREALQLMGVNADKIGDLWVRGDRGGQGVCTPSAAEALHGRLGAVRKVE 155

Query: 220 VSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           + C  +P+  L+    R+ ++ +T+EAS R+DA+ASAGF LSR+K+V  +  G +R+NW 
Sbjct: 156 IRCESLPIEQLQQPVKRSVRTLQTVEASCRLDAIASAGFGLSRAKIVTHVKAGRLRLNWG 215

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
            V +    L  GD + +  +G +++  +  T++ ++ VEL
Sbjct: 216 NVRQASRELVVGDRLQLQDRGSVEVLSLTRTKRERWRVEL 255


>gi|297544856|ref|YP_003677158.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842631|gb|ADH61147.1| RNA-binding S4 domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 248

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 137/231 (59%), Gaps = 7/231 (3%)

Query: 95  REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
           + V ++DFL+P   K  E  +   +  D+    +GGYP AER ++++ + + L  +   +
Sbjct: 22  KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLEGGYPFAER-KIAIIYFDFLQPEDTPI 80

Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
            A+ I GNF     SH D LGS+LG GI R+KIGDII++ +K    L+  ++  Y++ + 
Sbjct: 81  CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKEDK-CDILLHKDVESYVLMNF 137

Query: 213 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
            KVG   V  + I L  +     R K   +  ASLRVD++A+AGF +SR+K   LI +G 
Sbjct: 138 FKVGKEKVRVSSIDLKDVMEPEIRYKDIFSTVASLRVDSVAAAGFGISRTKASQLIKSGL 197

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
           +++NW       + ++ GD++S+ G GRI++ E+  +T+KG+ +V +++++
Sbjct: 198 LQINWEYTDDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248


>gi|227498574|ref|ZP_03928718.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
 gi|352684241|ref|YP_004896226.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
 gi|226904030|gb|EEH89948.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
 gi|350278896|gb|AEQ22086.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
          Length = 261

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 7/257 (2%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
             K  GD+   E    ++++A +A   R  + SDF+ P  +  + +       +   + G
Sbjct: 10  FFKAGGDE---ELAGKLIDLADQARRNRRYMVSDFMDPHGINVADIVASNYTQITMKSFG 66

Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           G+  AER R++    +    +PD  +AAL +T +  +    H D LG+  G G +R+ +G
Sbjct: 67  GFQNAERMRIAY-VVDDFYGEPDFAIAALLVTWDKRYYDVGHRDVLGAFTGMGCSRDILG 125

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
           DI+   E GAQ +V   +  +++++L ++G  +V    IPL  L+ +  R K      ++
Sbjct: 126 DIVFTDE-GAQMVVDKTMVPFILSNLTQIGAATVEVKEIPLTELKEKEQRVKVISATVSA 184

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           LR+DA+A+AGF +SRS++   I   +VRVNW         ++ GD++S   +GR ++ E+
Sbjct: 185 LRLDAVAAAGFGVSRSRMAEEIKGQNVRVNWQDAKNPSQLVKEGDVISFRSRGRAELAEV 244

Query: 307 N-STRKGKFAVELIQYL 322
             +T+KG+ A+ + +YL
Sbjct: 245 RGTTKKGRMAITMKRYL 261


>gi|121535251|ref|ZP_01667065.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306136|gb|EAX47064.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
          Length = 262

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 133/248 (53%), Gaps = 8/248 (3%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E    +L+ A      R+   S FL P     +       A ++  + GGY  AER +  
Sbjct: 19  ELAARLLDYAETVLRTRKYRASHFLDPFGFSVAETIAAHFAPLRLESSGGYEGAERVKAV 78

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             H + L S    +AA+ I  +  +   SH D LG+++G GI R+ +GDII+ G  GAQ 
Sbjct: 79  FVHEDFLGSIDFAIAAVGIAWDARYYELSHRDMLGALMGLGIDRDVVGDIIMTG-SGAQV 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALASA 255
           +V   +A ++ T+L KVG   V+   IPL  +    PR +  K I A   SLR+D +A+A
Sbjct: 138 VVDTAMAGFIETNLTKVGAAPVAVKIIPLSDI---APRIEKVKEIRATVPSLRLDVVAAA 194

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKF 314
           GF LSR+K+   I+   V+VNW         ++ GDI+S+ G+GR++I EI   T+KG+ 
Sbjct: 195 GFGLSRTKMAAEIAADKVKVNWQEAKNAAQAVKPGDIISMRGRGRVEICEILGQTKKGRI 254

Query: 315 AVELIQYL 322
           ++ L ++L
Sbjct: 255 SIFLKRFL 262


>gi|167037285|ref|YP_001664863.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040520|ref|YP_001663505.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|256751718|ref|ZP_05492592.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914567|ref|ZP_07131883.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
 gi|307724197|ref|YP_003903948.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|320115701|ref|YP_004185860.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|326389981|ref|ZP_08211544.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|392940765|ref|ZP_10306409.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
           siderophilus SR4]
 gi|166854760|gb|ABY93169.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514]
 gi|166856119|gb|ABY94527.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256749387|gb|EEU62417.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889502|gb|EFK84648.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
 gi|307581258|gb|ADN54657.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X513]
 gi|319928792|gb|ADV79477.1| RNA-binding S4 domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|325994041|gb|EGD52470.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|392292515|gb|EIW00959.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
           siderophilus SR4]
          Length = 248

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 138/232 (59%), Gaps = 9/232 (3%)

Query: 95  REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
           + V ++DFL+    K  E  +   +  D+     GGYP AER ++++ +P+ L  +   +
Sbjct: 22  KRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAER-KIAIIYPDFLQPEDTPI 80

Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
            A+ I GNF     SH D LGS+LG GI R+KIGDII++ +K    L+  ++  Y++ +L
Sbjct: 81  CAVRIEGNFS--KLSHRDVLGSLLGLGIKRQKIGDIIVKEDK-CDILLHKDVESYVLMNL 137

Query: 213 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
            KVG   V    I L   +E E      F T+ ASLRVD++A+AGF +SR+K   LI +G
Sbjct: 138 FKVGKEKVRVNSIDLKDVIEPEIKYKDIFSTV-ASLRVDSVAAAGFGISRTKASELIKSG 196

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
            +++NW       + ++ GD++S+ G GRI++ E+  +T+KG+ +V +++++
Sbjct: 197 LLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248


>gi|374296346|ref|YP_005046537.1| hypothetical protein [Clostridium clariflavum DSM 19732]
 gi|359825840|gb|AEV68613.1| hypothetical protein Clocl_2014 [Clostridium clariflavum DSM 19732]
          Length = 263

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 148/270 (54%), Gaps = 19/270 (7%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N +++LK V        V  +L+    A    +V  +DFL P  ++  + A    +D+  
Sbjct: 2   NKEEILKKVSKSEDRLVVAKVLDKFYLAEKTGKVTVTDFLDPR-MQNVVSACLNSSDIDN 60

Query: 124 -VAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSITGNFGFQPC-------SHGDFLG 173
            +  GGY  AER  + V  P  +  D  PD++    +      + C       SH D+LG
Sbjct: 61  FLFYGGYEGAERA-VVVFCPRNMPIDYEPDLIGFFKV-----LKICLMSRGSVSHRDYLG 114

Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
           S++G GI REKIGDI+++ E     +V  ++ADY+  +LEKVGN+ V    + L +L+  
Sbjct: 115 SLMGLGIKREKIGDILIKDEH-CLVIVENDVADYIKYNLEKVGNIKVELDYVGLDSLQAR 173

Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
             + K  +T  ASLR+D++ASAGF +SRSK+   I    V +NW T T    +++ GD++
Sbjct: 174 EQKVKEIRTTVASLRLDSVASAGFGMSRSKVQEYIRAERVNLNWETTTNLKKSVKEGDLI 233

Query: 294 SVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
           S+ GKGR+ + EI  +T+K + ++ L +++
Sbjct: 234 SIRGKGRVLVQEIGGTTKKDRISIYLKKFI 263


>gi|33865067|ref|NP_896626.1| hypothetical protein SYNW0531 [Synechococcus sp. WH 8102]
 gi|33638751|emb|CAE07046.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 291

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 130/243 (53%), Gaps = 1/243 (0%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E +  +L++A +     +   SDFL  P+ +E++  L  L+++     GG+  AERCRL 
Sbjct: 48  EGLAALLDLAEQVLRTWQPSWSDFLDAPLQEEALKRLSDLSELAWHRDGGHQGAERCRLL 107

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
               +        +  L I GNF F P +  D   ++   G   E +GD+ ++G++G Q 
Sbjct: 108 CHRRDQPVESTPPIQGLLIEGNFLFDPLTPEDLRSALHNMGAQPEDLGDLWVRGDRGGQG 167

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGF 257
           L+ P  A+ L     ++ +V + C  + +  L+    R  K   T+EAS R+DA+ASAGF
Sbjct: 168 LISPNAAELLQGRRGQLRDVEIHCDVLEITQLQLPAQRNPKRLTTVEASCRIDAIASAGF 227

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
            LSRSK+V+ I  G +R+NW  V +    L+ GD + +  +G +++     T++ ++ +E
Sbjct: 228 GLSRSKVVSQIKAGRLRLNWEPVLQGSRELKVGDRLQLQDRGSLELLSCTLTKRERWRIE 287

Query: 318 LIQ 320
           L++
Sbjct: 288 LMR 290


>gi|258514373|ref|YP_003190595.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778078|gb|ACV61972.1| RNA-binding S4 domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 267

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
            I ++  +  +   +  +DF  P  +      +E + D+K +  GGY +AER R+ +  P
Sbjct: 29  RIFDLCDKVKNNCRLQVTDFYDPHRMNLIAAMIENM-DLKILLWGGYEEAERKRMLL-VP 86

Query: 143 EALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
           E    + P +   L   GNF     +H D+LG++LG GI REK+GDII+  E  AQ +V 
Sbjct: 87  EHYKGEWPSLTGCLLAEGNFKTIEVTHRDYLGALLGLGIKREKLGDIIVL-ENAAQLIVA 145

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            E++D++  +L K+G V VS  RI    L     + K  +T   SLR D +   GF  SR
Sbjct: 146 EEISDFIAANLVKIGRVRVSVKRIKEQDLILPEKKFKEIRTTVPSLRFDVICGEGFGTSR 205

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQ 320
           SK+   I+   + +NW + +     ++  DI+S  G+GR++I E+   T+KG+  V L +
Sbjct: 206 SKIAREITAEKINLNWQSCSDLSRPVKEKDIISARGRGRLEIYEVGGKTKKGRLVVVLRK 265

Query: 321 YL 322
           YL
Sbjct: 266 YL 267


>gi|255656596|ref|ZP_05402005.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-23m63]
 gi|296449950|ref|ZP_06891714.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
 gi|296878332|ref|ZP_06902340.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
 gi|296261220|gb|EFH08051.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
 gi|296430630|gb|EFH16469.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
          Length = 261

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 5/237 (2%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +++ A       +V  ++FL P  +K ++  L    ++K    GGY QAER  + + +P 
Sbjct: 22  VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80

Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
            +  +   D +  L I GNF F+  SH D+LGSILG GI REKIGDII+  +   Q +V 
Sbjct: 81  YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            ++ D++I +LEKV   +V    I    +     + K      +S R+D + S  + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
                 I+   V VN+  +T     ++  D++S+ GKGR K+ +I + TRKGK  V+
Sbjct: 200 QDSAKYINGEKVHVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITRKGKIKVQ 256


>gi|88807417|ref|ZP_01122929.1| RNA-binding S4 [Synechococcus sp. WH 7805]
 gi|88788631|gb|EAR19786.1| RNA-binding S4 [Synechococcus sp. WH 7805]
          Length = 259

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 9/242 (3%)

Query: 87  MARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           MAR      EVL       S FL+ P L E    LE L++++ V  GG   AERCRL + 
Sbjct: 18  MARLLDQAEEVLRTWQPSWSPFLSGPEL-EDAGKLEALSELRMVRDGGREGAERCRLQLS 76

Query: 141 HPEALT-SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
             +  T S+   +  L + GNF F      D   +++   ++ + IGD+ L+G++GAQ +
Sbjct: 77  RRDQETNSESAPLCGLRLEGNFLFDRAEPDDMRQALMRLDVSADAIGDLWLRGDRGAQAI 136

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFK 258
             PE  ++L     +V +V +    +PL AL++   RT +  +++EAS R+DA+ASAGF 
Sbjct: 137 CTPEAGEHLNGLTGQVRDVPLLLETVPLEALQWPARRTPRLLRSVEASCRLDAIASAGFG 196

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           LSRSK+   I  G +R+NW  + +    L+ GD + +  +G +++  +  T++ ++ VE+
Sbjct: 197 LSRSKVTREIKEGRLRLNWGAIRQASRDLKVGDQLQLQDRGSVEVLSLTLTKRERWRVEM 256

Query: 319 IQ 320
           ++
Sbjct: 257 MR 258


>gi|333371306|ref|ZP_08463261.1| S4 domain protein [Desmospora sp. 8437]
 gi|332976333|gb|EGK13189.1| S4 domain protein [Desmospora sp. 8437]
          Length = 259

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V+ +L+   +   R   + + FL P     + M +++  ++     GG+  AER R  + 
Sbjct: 19  VERVLDWTEQVERRSRPVLTPFLNPREQTITDMLVKRAPELGVTFDGGFFDAERKRARIF 78

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
            P     D + ++ L +       P  H D LGS+LG G+ RE IGD+ L  E   Q ++
Sbjct: 79  PPWQEEGD-NGLSYLELESVDRSSPLKHPDVLGSLLGLGVKREVIGDL-LPRETHCQVII 136

Query: 201 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFK 258
             E+ DY+   L +VG + V  T I     E  PP+  T+      ASLRVDAL +  F+
Sbjct: 137 AGEILDYIRMQLNRVGRIPVRMTEIK--REEIRPPQQETEVVTVSVASLRVDALVAEAFR 194

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
           LSR+K   LI NG   +NW T       +R GD++S+ G+GR+++GEI   T+KG+  ++
Sbjct: 195 LSRAKATPLIKNGRCHINWKTTENPAEPVREGDMISLRGQGRVRVGEILGETKKGRHRIQ 254

Query: 318 LIQYL 322
           LI++L
Sbjct: 255 LIRFL 259


>gi|289578633|ref|YP_003477260.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
           italicus Ab9]
 gi|289528346|gb|ADD02698.1| RNA-binding S4 domain protein [Thermoanaerobacter italicus Ab9]
          Length = 248

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 137/232 (59%), Gaps = 9/232 (3%)

Query: 95  REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
           + V ++DFL+P   K  E  +   +  D+     GGYP AER ++++ + + L  +   +
Sbjct: 22  KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLDGGYPFAER-KIAIIYFDFLQPEETPI 80

Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
            A+ I GNF     SH D LGS+LG GI R+KIGDII++ +K    L+  ++  Y++ + 
Sbjct: 81  CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKEDK-CDILLHKDVESYVLMNF 137

Query: 213 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
            KVG   V    I L   +E E      F T+ ASLRVD++A+AGF +SR+K   LI +G
Sbjct: 138 FKVGKEKVRINSIDLKDVMEPEIKYKDIFSTV-ASLRVDSIAAAGFGISRTKASQLIKSG 196

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
            ++VNW       + ++ GD++S+ G GRI++ E+  +T+KG+ +V +++++
Sbjct: 197 LLQVNWEYTGDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248


>gi|376260959|ref|YP_005147679.1| hypothetical protein [Clostridium sp. BNL1100]
 gi|373944953|gb|AEY65874.1| hypothetical protein Clo1100_1662 [Clostridium sp. BNL1100]
          Length = 260

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 99  HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAAL 155
           +SDFL+P     +   L+++ DV     GGY  AER  ++V   + +  D      V  L
Sbjct: 36  YSDFLSPYEASVAKKVLDRVKDVFYKLTGGYEGAERA-ITVISSDFIEEDIPYNTPVGLL 94

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            IT        SH D+LGS+LG GI REKIGDI++  E  A   V+ ++A+Y++ +L+K+
Sbjct: 95  RITPVIE-NKLSHRDYLGSLLGLGIKREKIGDILV-NETFADVFVIDKIAEYILYNLDKI 152

Query: 216 GNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           GNV V C    +   ++ PP+ K  S  T  ASLR D++AS+GF LSR+K+++      V
Sbjct: 153 GNVKVQCELCDI--YQFTPPQKKERSINTTVASLRADSVASSGFGLSRTKVMDYFKAQRV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
            VNW  V      L  GD++S+ G GRI + ++  +TRK + ++
Sbjct: 211 NVNWELVQSPSKMLDEGDVISIRGMGRIVLEKVLGNTRKDRISI 254


>gi|188585944|ref|YP_001917489.1| RNA-binding S4 domain-containing protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350631|gb|ACB84901.1| RNA-binding S4 domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 265

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DF  P  L  +   +   +DV A+  GG   AER ++ +  P+     PD   +  L +
Sbjct: 40  TDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGI-FPKEWNVTPDQLGIEVLEL 98

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKVG 216
            GNF F   SH D LG+++G G+ R+KIGDI +  E+    + V E ++ ++  +L +V 
Sbjct: 99  RGNFRFSSISHRDVLGAVMGLGLKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVK 158

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           NVSVS   +    +  +   T+  K   +SLR+DA+AS GF  SRSK+  LI    +++N
Sbjct: 159 NVSVSAEAMDQEEIPRQQEYTREIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLN 218

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           W        T+  GD++S+ GKGR++I  I   +RKG+  V L +Y
Sbjct: 219 WQPTKDPKATVSEGDVISLRGKGRVEISAIGGKSRKGRRHVTLKRY 264


>gi|421074254|ref|ZP_15535294.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
 gi|392527760|gb|EIW50846.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
          Length = 261

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 134/241 (55%), Gaps = 4/241 (1%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +L++A  A   R+   ++FL P     +         +K V+ GGY  AER + +V   E
Sbjct: 23  LLDLAEAALRNRKYKVTEFLDPYGYSIAETIGAHYDRLKLVSSGGYDGAERVK-AVFVNE 81

Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
                PD+ V A+S+T +  +   +H D LG+++  GI RE IGDII+ G  G Q ++  
Sbjct: 82  EFRGTPDVAVEAVSVTWDERYYQITHRDVLGALMALGIKREIIGDIIMCGH-GCQIIIDS 140

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
              ++L+ +  K+G   +S  ++ +  + +   + K  KT  ASLR+D +A+AGF  SRS
Sbjct: 141 SFFNFLMQNFSKIGAAPISIAQLKIADIAHREEKVKEIKTTVASLRLDVIAAAGFGTSRS 200

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           ++   I  G ++VNW     +  +++  D++S+ G+GR+++ E+   TRKG+ ++ L ++
Sbjct: 201 RMSEEIVAGKLKVNWQEAKNSAQSIKENDVISMRGRGRVEVCEVLGQTRKGRMSIVLKRF 260

Query: 322 L 322
           +
Sbjct: 261 M 261


>gi|254976209|ref|ZP_05272681.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-66c26]
 gi|255093596|ref|ZP_05323074.1| putative RNA-binding cell division protein [Clostridium difficile
           CIP 107932]
 gi|255307652|ref|ZP_05351823.1| putative RNA-binding cell division protein [Clostridium difficile
           ATCC 43255]
 gi|255315344|ref|ZP_05356927.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-76w55]
 gi|255518009|ref|ZP_05385685.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-97b34]
 gi|255651125|ref|ZP_05398027.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-37x79]
 gi|260684191|ref|YP_003215476.1| RNA-binding cell division protein [Clostridium difficile CD196]
 gi|260687850|ref|YP_003218984.1| RNA-binding cell division protein [Clostridium difficile R20291]
 gi|384361833|ref|YP_006199685.1| RNA-binding cell division protein [Clostridium difficile BI1]
 gi|423092653|ref|ZP_17080457.1| S4 domain protein [Clostridium difficile 70-100-2010]
 gi|260210354|emb|CBA64710.1| putative RNA-binding cell division protein [Clostridium difficile
           CD196]
 gi|260213867|emb|CBE05880.1| putative RNA-binding cell division protein [Clostridium difficile
           R20291]
 gi|357553523|gb|EHJ35270.1| S4 domain protein [Clostridium difficile 70-100-2010]
          Length = 261

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 5/237 (2%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +++ A       +V  ++FL P  +K ++  L    ++K    GGY QAER  + + +P 
Sbjct: 22  VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80

Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
            +  +   D +  L I GNF F+  SH D+LGSILG GI REKIGDII+  +   Q +V 
Sbjct: 81  YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            ++ D++I +LEKV   +V    I    +     + K      +S R+D + S  + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
                 I+   V VN+  +T     ++  D++S+ GKGR K+ +I + T+KGK  V+
Sbjct: 200 QDSAKYINGEKVHVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGKIKVQ 256


>gi|220931768|ref|YP_002508676.1| RNA-binding S4 domain-containing protein [Halothermothrix orenii H
           168]
 gi|219993078|gb|ACL69681.1| RNA-binding S4 domain protein [Halothermothrix orenii H 168]
          Length = 262

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-- 140
            IL+       R+  + ++FL P     +   ++++ D+     GGY +AER R+++   
Sbjct: 22  QILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFPD 81

Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             +PE + +    V  L + GNF F   SH DFLG+ILG GI RE IGDI++  +  A+ 
Sbjct: 82  YLYPEHVKTP---VCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILILKD-FAEV 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V  E+ +Y+   L+KV  V V+   +    +      T+ F T   S+R+DA++SAGF 
Sbjct: 138 VVAEEIKEYICLRLKKVHQVPVNVEELDRENVVIPAENTREFTTTVPSMRLDAVSSAGFG 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            SR+K+  +I +  V+VNW        T+  GD++S+ G+GR++I
Sbjct: 198 DSRNKISRIIKSEKVKVNWKKENNPAQTVEIGDLISIKGRGRVQI 242


>gi|148240319|ref|YP_001225706.1| hypothetical protein SynWH7803_1983 [Synechococcus sp. WH 7803]
 gi|147848858|emb|CAK24409.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
          Length = 259

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 135/246 (54%), Gaps = 9/246 (3%)

Query: 83  HILEMARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR 136
           H   MAR      EVL       S FLT P L+E+   LE LA+++ V  GG   AERCR
Sbjct: 14  HRAVMARLLDQAEEVLRTWQPSWSPFLTGPELEEAG-KLEALAELRMVRDGGREGAERCR 72

Query: 137 LSVGH-PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           L +    +   ++   +  L + GNF F      D   +++   ++ + IGD+ L+G++G
Sbjct: 73  LQLSRRDQEADAESAPLCGLRLEGNFLFDRAEPDDMRQALMQLDVSADSIGDLWLRGDRG 132

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALAS 254
           AQ +  PE  + L     +V +V +    +PL AL++   RT +  +++EAS R+DA+AS
Sbjct: 133 AQAVCTPEAGEQLNGLTGQVRDVPLLLETVPLDALQWPARRTPRLLRSVEASCRLDAIAS 192

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKF 314
           AGF LSRSK+   I  G +R+NW  + +    ++ GD + +  +G +++  +  T++ ++
Sbjct: 193 AGFGLSRSKVTREIKEGRLRLNWGAIRQASRDVKVGDQLQLQDRGSVEVLSLTLTKRERW 252

Query: 315 AVELIQ 320
            VE+++
Sbjct: 253 RVEMMR 258


>gi|317969027|ref|ZP_07970417.1| RNA-binding S4 [Synechococcus sp. CB0205]
          Length = 260

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 139/252 (55%), Gaps = 6/252 (2%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           D LL+G  +  A+  +  + E A R     E + S FL   +L+E+   L  L ++   +
Sbjct: 5   DQLLQGCRNPEAMGALISLAEQALRTW---EPVWSYFLAADLLEEAQERLGSLTELTLSS 61

Query: 126 QGGYPQAERCRLSVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
            GG+PQAER RL +   E   ++ P+  +  L ITGNF F P    D    ++  G    
Sbjct: 62  DGGWPQAERRRLLLRRVEISDAERPEAPLQGLVITGNFLFDPAEPLDVRQGLIQAGAQAG 121

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKT 242
            +GDI ++G++GAQ ++  E+A+        V +V +S   + + AL+    RT K   +
Sbjct: 122 DLGDIWMRGDRGAQLILRQEVAEAWGGRTALVRSVEISTEAVAVSALQLPASRTPKQLSS 181

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           +EASLR+DA+ASAG  +SRSK+ + I  G VRVNW+ +T     L+ GD V + G+G ++
Sbjct: 182 VEASLRLDAVASAGLGVSRSKMADWIRAGAVRVNWSVITSPSRELKQGDRVRLDGRGELE 241

Query: 303 IGEINSTRKGKF 314
           I EI  T++ ++
Sbjct: 242 ILEIQPTKRERW 253


>gi|392960481|ref|ZP_10325949.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
 gi|421054762|ref|ZP_15517727.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
 gi|421061533|ref|ZP_15523848.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
 gi|421066814|ref|ZP_15528368.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
 gi|421071625|ref|ZP_15532741.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
 gi|392440443|gb|EIW18123.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
 gi|392446890|gb|EIW24161.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
 gi|392449284|gb|EIW26413.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
 gi|392453094|gb|EIW29998.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
 gi|392455058|gb|EIW31865.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
          Length = 261

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +L++A  A   R+   ++FL P     +         +K VA GGY  AER + +V   E
Sbjct: 23  LLDLAEAALRNRKYKVTEFLDPYGYSIAETIGAHYDRLKLVASGGYDGAERVK-AVFINE 81

Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
                PD  V A+S+T +  +   +H D LG+++  GI RE IGDII+ G  G Q ++  
Sbjct: 82  EFRGTPDAAVEAVSVTWDERYYQITHRDVLGALMALGIKREIIGDIIMCGH-GCQIIIDS 140

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
              ++L+ +  K+G   +S T++ +  +     + K  KT  ASLR+D +A+AGF  SRS
Sbjct: 141 SFFNFLMQNFSKIGAAPISITQLKIADIAPREEKVKEIKTTVASLRLDVIAAAGFGTSRS 200

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           ++   I  G +++NW     +  +++  D++S+ G+GR+++ E+   TRKG+ +V L ++
Sbjct: 201 RMSEEIVAGKLKINWQEAKNSAQSIKENDVISMRGRGRVEVCEVLGQTRKGRMSVVLKRF 260

Query: 322 L 322
           +
Sbjct: 261 M 261


>gi|210622350|ref|ZP_03293119.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
 gi|210154338|gb|EEA85344.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
          Length = 261

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 130/238 (54%), Gaps = 7/238 (2%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +++ A       E   ++F+ P  +K +M  +   +D+K  + GGY  AER  LS+ +P 
Sbjct: 22  LIDKANTCLKNYEAKSTEFMNPFEVKNAMDIINSESDLKYHSDGGYEGAERSVLSI-YPF 80

Query: 144 ALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
            +  + DI   +  + I GNF F+  SH D+LGS+LG GI REKIGDI++  E   Q +V
Sbjct: 81  YMEYE-DIEQPIKFIQIDGNFKFRSVSHKDYLGSLLGLGIKREKIGDILIH-EDFCQVIV 138

Query: 201 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 260
             ++ DY++ +L KV   SV    I    L+    + K      +S R+D + S  + +S
Sbjct: 139 SSDICDYIVMNLTKVATNSVKVKEINREELKTSEKKYKDISFTVSSDRLDCVISGIYNIS 198

Query: 261 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
           R + +  I+   V +N+  +T    T+ +GD++SV GKGR ++ EI   TRKG+  V+
Sbjct: 199 RQESLKYINAERVHLNYEKITSASKTVSSGDLISVRGKGRSEVVEIGGETRKGRTRVK 256


>gi|427704338|ref|YP_007047560.1| photosystem II S4 domain-containing protein [Cyanobium gracile PCC
           6307]
 gi|427347506|gb|AFY30219.1| photosystem II S4 domain protein [Cyanobium gracile PCC 6307]
          Length = 257

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 5/256 (1%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL+G       EE+  +  +A  A    E   S FL   V +E+   L  L+++   ++
Sbjct: 6   DLLEG---SRHPEELGALFSLAETALRTWEPQVSGFLEAAVREEAEDRLGALSELTLASE 62

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GG+P AER  L +       + P ++  L I+GNF F P S  D    + G+G    ++G
Sbjct: 63  GGHPGAERRCLLLARSGQEPTAPALLG-LEISGNFLFDPASAADMAEGLAGSGATAAELG 121

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEA 245
           D+ L+G++GAQ +V   LA  L  +   V  V V     P+ AL+    R  +   T+EA
Sbjct: 122 DLWLRGDRGAQAIVSEALARRLDGTEGLVRTVPVRFEARPIEALQLPARRLPRQLTTVEA 181

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DALASAGF LSR+++  LI  G VR++WT V+     L  G  V + G+G +++  
Sbjct: 182 SLRLDALASAGFGLSRNRMATLIRQGAVRLDWTVVSSPSQPLAVGARVQLEGRGELEVLA 241

Query: 306 INSTRKGKFAVELIQY 321
           I  T++ +F + L ++
Sbjct: 242 IEPTKRERFRIRLERH 257


>gi|452992508|emb|CCQ96039.1| RNA-binding S4 domain protein [Clostridium ultunense Esp]
          Length = 264

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 128/257 (49%), Gaps = 9/257 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           D LL  + DK  I  ++ +L+      +R  +  +DF+ P   + +   L +  D+    
Sbjct: 9   DSLLNHIVDKEQILNMRRVLDQIEIVMNRHTIGITDFMDPYERRLAQSILNRFIDISYKE 68

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            GG  +AER  + + +PE      DI   + +L I GN      SH DFLG IL  GI R
Sbjct: 69  LGGIDEAERKVIMI-YPEYFQY-QDIESPIRSLMIEGNIS--KLSHRDFLGGILNLGINR 124

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EKIGDI++  E   Q +V  E+ DY++ SL KVG   V    IPL  L+      +   T
Sbjct: 125 EKIGDILIH-EDNVQVVVKSEIFDYILISLRKVGKEKVKVREIPLKELKSSNIEFEDITT 183

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
              SLR+DAL S+ + LSR     LI +   +VNW  + +    +  GDI+S  G GR  
Sbjct: 184 TVPSLRLDALISSAWNLSRKDSQGLIESKKTKVNWEPIDRVSKDIGEGDIISAKGFGRFI 243

Query: 303 IGEINS-TRKGKFAVEL 318
           +  I   ++KG+  VEL
Sbjct: 244 LNSIKGISKKGRVRVEL 260


>gi|284048331|ref|YP_003398670.1| RNA-binding S4 domain-containing protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952552|gb|ADB47355.1| RNA-binding S4 domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 265

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 7/256 (2%)

Query: 69  LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
            K  GD    E    +L++A+ A   R    S FL P     + +       V+    GG
Sbjct: 15  FKASGDA---ELAAQLLDLAKGARKSRRARVSGFLDPHGQNVAEIVAANYPQVRYEMNGG 71

Query: 129 YPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
           +  AER +++    E     PD  + AL I  +  +    H D LG+ +G G  RE +GD
Sbjct: 72  FQNAERQKVAF-IAEDFYGQPDFAITALEILWDKRYYDIGHRDVLGAFMGLGCKREILGD 130

Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
           I+   E GAQ  V   + D+++++L K+G  +V    IPL  L+ +  + K      A+L
Sbjct: 131 IVFIDE-GAQLAVDTPMVDFILSNLTKIGAATVEVKVIPLEDLKEKEQKIKLISATVAAL 189

Query: 248 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN 307
           R+DA+A++G+ +SRS++ + I   +V++NW        T++ GD++S   +GR+++ E+ 
Sbjct: 190 RLDAVAASGYGVSRSRMADEIKGQNVKLNWQEAKSPSQTVKEGDVISFRSRGRVELAEVR 249

Query: 308 -STRKGKFAVELIQYL 322
            +T+KG++A+ L +Y+
Sbjct: 250 GTTKKGRYAITLKRYI 265


>gi|306520977|ref|ZP_07407324.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-32g58]
          Length = 252

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +++ A       +V  ++FL P  +K ++  L    ++K    GGY QAER  + + +P 
Sbjct: 22  VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80

Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
            +  +   D +  L I GNF F+  SH D+LGSILG GI REKIGDII+  +   Q +V 
Sbjct: 81  YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            ++ D++I +LEKV   +V    I    +     + K      +S R+D + S  + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
                 I+   V VN+  +T     ++  D++S+ GKGR K+ +I + T+KGK
Sbjct: 200 QDSAKYINGEKVHVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGK 252


>gi|374308765|ref|YP_005055196.1| S4 domain-containing protein [Filifactor alocis ATCC 35896]
 gi|291167097|gb|EFE29143.1| S4 domain protein [Filifactor alocis ATCC 35896]
          Length = 263

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 8/242 (3%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E+V  +L++ ++     EV HSDFLTP   +E    L  + DV+    G   Q+ER  +S
Sbjct: 20  EKVLRVLDIVQQVLYTHEVKHSDFLTPYEQRELASVLNGIYDVRYSFDGMSEQSERKIVS 79

Query: 139 VGHPEAL-TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           + +P+ L  S  DI+  L ITGN  F   SH D+LGSILG G+ REKIGDI +  + GA 
Sbjct: 80  I-YPDYLEESCQDILVCLKITGNTQFSKLSHRDYLGSILGLGLRREKIGDIFVVKD-GAY 137

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPL--LALEYEPPRTKSFKTIEASLRVDALASA 255
            + +  +ADY+   LEKV NVSV   R+    +AL  +  R   F  + +S+R+D++ + 
Sbjct: 138 IVCLQSVADYICFHLEKVKNVSVKVNRVEKDEIALPKQEKRECEF--VVSSIRLDSIVAG 195

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKF 314
            F LSR+   +L+    V V++  ++     L    ++SV G G+    E+   T+K ++
Sbjct: 196 MFHLSRNDAKSLVQKELVSVDYEVISNPSKILEPPSVISVRGFGKGTFEEVLYQTKKDRY 255

Query: 315 AV 316
            +
Sbjct: 256 KL 257


>gi|126700234|ref|YP_001089131.1| RNA-binding cell division protein [Clostridium difficile 630]
 gi|255101784|ref|ZP_05330761.1| putative RNA-binding cell division protein [Clostridium difficile
           QCD-63q42]
 gi|115251671|emb|CAJ69506.1| putative RNA-binding cell division protein [Clostridium difficile
           630]
          Length = 261

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 5/237 (2%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +++ A       +V  ++FL P  +K ++  L    ++K    GGY +AER  + + +P 
Sbjct: 22  VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYERAERSTVFI-YPF 80

Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
            +  +   D +  L I GNF F+  SH D+LGSILG GI REKIGDII+  +   Q +V 
Sbjct: 81  YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVS 139

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            ++ D++I +LEKV   +V    I    +     + K      +S R+D + S  + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
                 I+   V VN+  +T     ++  D++S+ GKGR K+ +I + T+KGK  V+
Sbjct: 200 QDSAKYINGEKVHVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGKIKVQ 256


>gi|423081295|ref|ZP_17069903.1| S4 domain protein [Clostridium difficile 002-P50-2011]
 gi|423084646|ref|ZP_17073146.1| S4 domain protein [Clostridium difficile 050-P50-2011]
 gi|357550961|gb|EHJ32765.1| S4 domain protein [Clostridium difficile 002-P50-2011]
 gi|357552216|gb|EHJ33991.1| S4 domain protein [Clostridium difficile 050-P50-2011]
          Length = 261

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 5/237 (2%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           +++ A       +V  ++FL P  +K ++  L    ++K    GGY QAER  + + +P 
Sbjct: 22  VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80

Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
            +  +   D +  L I GNF F+  SH D+LGSIL  GI REKIGDII+  +   Q +V 
Sbjct: 81  YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILSLGIKREKIGDIIIH-DSFCQVVVS 139

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            ++ D++I +LEKV   +V    I    +     + K      +S R+D + S  + +SR
Sbjct: 140 SDICDFIIVNLEKVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISR 199

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
                 I+   V VN+  +T     ++  D++S+ GKGR K+ +I + T+KGK  V+
Sbjct: 200 QDSAKYINGEKVHVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGKIKVQ 256


>gi|334341816|ref|YP_004546796.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
           DSM 2154]
 gi|334093170|gb|AEG61510.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
           DSM 2154]
          Length = 262

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 6/211 (2%)

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFL 172
           LE++  +   A GGYP AER R+++  P+ L  S  +  +  L++ GNF     +H DFL
Sbjct: 55  LERIPGLDFAAGGGYPTAERVRIAL-FPDYLDESQVNFELVLLAVEGNFKMVKTTHRDFL 113

Query: 173 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 232
           GSIL  GI RE IGDI++   +G Q +V  E+A YL  +L KV  V V    I    L  
Sbjct: 114 GSILSLGIKRELIGDILIT-PRGCQVIVAREVASYLRANLTKVHRVGVEVREIGFEVLSL 172

Query: 233 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 292
                K  +T  ASLR+DA+A+AGF +SRS++   I    + +NW   ++    ++ GD+
Sbjct: 173 PEVTIKEIRTTVASLRLDAVAAAGFGMSRSRMAREIQAEKLNLNWCG-SEVSAMVQEGDM 231

Query: 293 VSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
           +S+ G+GR+++ E+  ST+ G+ ++ L ++L
Sbjct: 232 LSLRGRGRVEVAEVKGSTKSGRISIVLKRFL 262


>gi|326203533|ref|ZP_08193397.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986353|gb|EGD47185.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 260

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 141/260 (54%), Gaps = 18/260 (6%)

Query: 66  DDLLKGVG---DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVK 122
           ++LLK V    D+  +  +   +E  R +S     ++SDFL+P         L+++ D  
Sbjct: 4   NELLKMVSKLEDRVLVSRLLDKVEQCRYSS----FVYSDFLSPYEASVVKKVLDRVKDAF 59

Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTG 179
               GGY  AER  ++V   + +  D      ++ L IT        SH D+LGS++G G
Sbjct: 60  YKLTGGYEGAERA-ITVISSDFIEEDIPYSTPISLLRITPVID-NKLSHRDYLGSLIGLG 117

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK- 238
           I REKIGDI++  E  A   V+ ++A+Y++ +L+K+GNV V C    +   ++ PP+ K 
Sbjct: 118 IKREKIGDILV-NETFADVFVIDKIAEYILYNLDKIGNVKVQCELCDI--YQFTPPQKKE 174

Query: 239 -SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
            S  T  ASLR D++AS+GF LSR+K++       V VNW  V      L  GD++S+ G
Sbjct: 175 RSINTTVASLRADSVASSGFGLSRTKVMEYFKAQRVNVNWEVVQSPSKMLDEGDVISIRG 234

Query: 298 KGRIKIGEI-NSTRKGKFAV 316
            GRI + ++  +TRK + ++
Sbjct: 235 MGRIVLEKVLGNTRKDRISI 254


>gi|124026489|ref|YP_001015604.1| S4-like domain-containing protein [Prochlorococcus marinus str.
           NATL1A]
 gi|123961557|gb|ABM76340.1| Uncharacterized conserved protein, contains S4-like domain
           [Prochlorococcus marinus str. NATL1A]
          Length = 262

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 6/247 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           +E++ +L  A +A S R  + S F++  +++E       L D+  + +GG+P AER R+ 
Sbjct: 16  KELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRIC 75

Query: 139 VGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
                     P I   +  + I GNF F      DF   +       + IGDI L  ++G
Sbjct: 76  FLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWLIRDRG 135

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE--YEPPRTKSFKTIEASLRVDALA 253
           AQ +   + AD +   + K+  V ++   + L  +E  +  P+ K   T+EAS R+DA+A
Sbjct: 136 AQAICTKKCADSINQKIGKLREVEITIHALDLNEMEIPFNRPK-KVINTVEASTRIDAIA 194

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 313
           SAGF LSRSK++  I  G +R+NW    +   ++  GD++ +  KG +KI  I+ T+K +
Sbjct: 195 SAGFGLSRSKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKGSLKILNIDKTKKER 254

Query: 314 FAVELIQ 320
           + ++L++
Sbjct: 255 WRIKLLR 261


>gi|403379008|ref|ZP_10921065.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JC66]
          Length = 259

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 3/243 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V    E   +A  R EV  +DFL P         + +   VK    GG  +AER R  + 
Sbjct: 17  VNKAWEWIEKAEHRHEVRLTDFLDPRQAYVVSTLVNRTTQVKLHLSGGSDEAERKRAWIA 76

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
                 ++ D  +  L++      +   HGD++G++LG G+ R+KIGDI +Q E G  ++
Sbjct: 77  PDYLHPAETDFSMCVLAVDAGEEGRALDHGDYMGAVLGLGLKRDKIGDIHVQ-ESGCHYV 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  E+ DYL   L +V  + V    +PL  L+    + +      ASLR+DAL    FK+
Sbjct: 136 IAQEVGDYLNLHLRQVHRIHVHTELLPLSELKPTTSKLEEMSFTVASLRLDALVGDVFKM 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR+K +  I  G  +VNW       T L TGD+VS+ G GR K+ E    T+KG+  +++
Sbjct: 196 SRAKALQPIKAGHCKVNWKEEPDPSTLLETGDLVSLKGYGRFKVMETEGMTKKGRIRIKI 255

Query: 319 IQY 321
            +Y
Sbjct: 256 GRY 258


>gi|357008377|ref|ZP_09073376.1| RNA-binding S4 domain-containing protein [Paenibacillus elgii B69]
          Length = 260

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 100 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 154
           +DFL P      +  L  LA    DV+    GG+P AER R  V     +  D ++ ++ 
Sbjct: 36  TDFLDP----RQIFILTTLANRNPDVQVRFDGGHPDAERKRALVAPDYRVLDDEEMGISL 91

Query: 155 LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           + IT  +   +   HGDF+G+ILG GI R+KIGDI ++ E G  FLV  E+ADY+  +L 
Sbjct: 92  IEITSEDEKLKELDHGDFMGAILGLGIKRDKIGDIYVR-EDGCHFLVASEIADYIRLNLS 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +V  + V   ++PL  L+    +        ASLR+D +AS  ++LSR+K++  I  G  
Sbjct: 151 QVHRLHVRTEQLPLGKLKATETKLDEMFLSVASLRLDGIASDVYRLSRAKVLVPIKAGRC 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           +VNW         L+ GD+VS+ G GR K+ E+   ++KG++ +++ +Y
Sbjct: 211 KVNWKQEEDPSKPLKQGDVVSLQGFGRFKVLEVEGVSKKGRYRLKIGKY 259


>gi|334133974|ref|ZP_08507509.1| S4 domain protein [Paenibacillus sp. HGF7]
 gi|333608482|gb|EGL19779.1| S4 domain protein [Paenibacillus sp. HGF7]
          Length = 259

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 131/235 (55%), Gaps = 6/235 (2%)

Query: 92  SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPD 150
           ++  +V  +DFL P         + +  DV     GGYP AER R  +G P+ L  S  D
Sbjct: 27  AAHHKVKRTDFLDPRQAFILRTLVNRNPDVNCRLDGGYPDAERQRAILG-PDYLDLSGED 85

Query: 151 I-VAALSI-TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 208
           + +  LS+ +G+  FQ  SHGD++G+IL  G+ R+K+GDI +  E+G  F+V  E ADYL
Sbjct: 86  MGLRVLSVESGDSKFQALSHGDYMGAILALGMKRDKVGDINVS-EQGCHFVVAEEAADYL 144

Query: 209 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
             +L +V  V V+   +P+  L     + +      ASLR+D + S  F+LSR+K++  I
Sbjct: 145 HLNLSQVHRVHVTTEILPIDKLRPSAVKLEEMSLSVASLRLDGIVSDVFRLSRAKVLIPI 204

Query: 269 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 322
             G  +VNW         L+ GD+VS+ G GR ++ EI   T+KG+  +++ +Y+
Sbjct: 205 GAGKCKVNWKPEENPSVPLQEGDVVSLQGFGRFRVLEIEGVTKKGRTRMKVGKYV 259


>gi|329922640|ref|ZP_08278192.1| S4 domain protein [Paenibacillus sp. HGF5]
 gi|328941982|gb|EGG38265.1| S4 domain protein [Paenibacillus sp. HGF5]
          Length = 261

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 10/253 (3%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQA 132
           K+  E V    E    A    E   +DFL P    + ES+  + +  DV AV  GG+  A
Sbjct: 12  KDEREFVDRAWEWVVNAGQYHETKLTDFLDPRQRFILESL--VNRHPDVHAVFDGGHADA 69

Query: 133 ERCRLSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
           ER R  +  P+  AL  +  ++  LSI+ G+  F    HGD++GSILG GI R KIGDI 
Sbjct: 70  ERVRAMIA-PDYRALEGEDLMMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDIH 128

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
           +  + G   +V  +++ +L  +L +V  V V    +PL  L+      ++     +S+R+
Sbjct: 129 VLAD-GCHAVVADDISAFLHLNLSQVHRVHVMTDLLPLDKLQVARTNFEAMDITVSSMRL 187

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS- 308
           D +AS  +++SR+K+V  I  G  RVNW       T L+ GD+VS+ G GR K+ E    
Sbjct: 188 DGIASDAYRISRTKIVVPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGFGRFKVLETGGL 247

Query: 309 TRKGKFAVELIQY 321
           T+KG++ +++ +Y
Sbjct: 248 TKKGRYRIKVGKY 260


>gi|220928051|ref|YP_002504960.1| RNA-binding S4 domain-containing protein [Clostridium
           cellulolyticum H10]
 gi|219998379|gb|ACL74980.1| RNA-binding S4 domain protein [Clostridium cellulolyticum H10]
          Length = 260

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 141/263 (53%), Gaps = 24/263 (9%)

Query: 66  DDLLKGVG---DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVK 122
           ++LLK V    D+  +  +   +E  R +S      +SDFL+P     S   L+++ +V 
Sbjct: 4   NELLKMVSKLEDRVLVSRLLDKIEQCRYSS----FAYSDFLSPYEASVSKKILDRVKEVF 59

Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS------ITGNFGFQPCSHGDFLGSIL 176
               GGY  AER  ++V   + +  D      +S      +T N      SH D+LGS+L
Sbjct: 60  YKLTGGYDGAERV-ITVISNDFIEEDIPYSTPISLLRISPVTEN----KLSHRDYLGSLL 114

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
           G GI REKIGDI++  EK     V+ ++A+Y+  +L+K+GN  V C    +   ++ PP+
Sbjct: 115 GLGIKREKIGDILV-SEKCTDVFVIDKIAEYISYNLDKIGNTKVHCELCDIY--QFTPPQ 171

Query: 237 TK--SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 294
            K  S  T  ASLR D++AS+GF LSR+K+++      V VNW  V      L  GD++S
Sbjct: 172 KKVRSINTTVASLRADSVASSGFGLSRTKVMDYFKAQKVNVNWELVQSPSKMLTEGDVIS 231

Query: 295 VSGKGRIKIGEI-NSTRKGKFAV 316
           + G GRI + ++  +TRK + ++
Sbjct: 232 IRGMGRIVLEKVLGNTRKDRISI 254


>gi|379723208|ref|YP_005315339.1| RNA-binding S4 domain-containing protein [Paenibacillus
           mucilaginosus 3016]
 gi|386725930|ref|YP_006192256.1| RNA-binding S4 domain-containing protein [Paenibacillus
           mucilaginosus K02]
 gi|378571880|gb|AFC32190.1| RNA-binding S4 domain-containing protein [Paenibacillus
           mucilaginosus 3016]
 gi|384093055|gb|AFH64491.1| RNA-binding S4 domain-containing protein [Paenibacillus
           mucilaginosus K02]
          Length = 260

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 157
           +DFL P         + +  DV+ +  GG+P AER R  V  P+   L S+   +  LSI
Sbjct: 36  TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVA-PDYRVLESEDPGITLLSI 94

Query: 158 TG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           T  +   +   HGD++G+IL  GI REK+GDI ++ + G   LV  E+ADY   +L +V 
Sbjct: 95  TSPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPD-GCHILVASEIADYFRLNLSQVH 153

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V    +PL  L++   + +  +   ASLR+D + S  ++LSR+K++  I  G  +VN
Sbjct: 154 RVHVMTEVLPLERLQFTEVKLEELQLSVASLRLDGIVSDVYRLSRAKVLVPIKAGRCKVN 213

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           W         LR GD+VS+ G GR K+ EI   T+KG+  V++ +Y
Sbjct: 214 WKQEEDPSKPLREGDVVSLQGAGRFKVLEIEGVTKKGRTRVKIGKY 259


>gi|125973307|ref|YP_001037217.1| RNA-binding S4 protein [Clostridium thermocellum ATCC 27405]
 gi|256003788|ref|ZP_05428776.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
 gi|281417510|ref|ZP_06248530.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
 gi|385778780|ref|YP_005687945.1| RNA-binding S4 domain-containing protein [Clostridium thermocellum
           DSM 1313]
 gi|419723203|ref|ZP_14250338.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
 gi|419724893|ref|ZP_14251948.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
 gi|125713532|gb|ABN52024.1| RNA-binding S4 domain protein [Clostridium thermocellum ATCC 27405]
 gi|255992349|gb|EEU02443.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
 gi|281408912|gb|EFB39170.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
 gi|316940460|gb|ADU74494.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 1313]
 gi|380771513|gb|EIC05378.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
 gi|380780970|gb|EIC10633.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
          Length = 263

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 137/264 (51%), Gaps = 7/264 (2%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N + +L+G+        V  IL+    +       HSDFL P         LE       
Sbjct: 2   NKEVILRGISKAEDKLLVARILDKYTLSQKIMSYTHSDFLDPYQQNVVRKCLEMSGIRDH 61

Query: 124 VAQGGYPQAERCRLSVG---HPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           V  GG+  AER  +       PE + S+       L I  N   +  SH D+LGS++G G
Sbjct: 62  VFYGGFSGAERTVVVFCPYYMPENIESEFSGFFEILKIKPN-TRENFSHRDYLGSLMGLG 120

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I REKIGDI+++ E  A  +V+ ++ADY+  +L KVGN  V    +    L+   P+ K 
Sbjct: 121 IKREKIGDILVR-EDFAFVVVLKDIADYIRINLTKVGNARVEIDIVNPDELDILEPKVKE 179

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
             +  ASLR+D++ASAGF +SRSK  +LI    V VNW T T     ++ GD +S+ GKG
Sbjct: 180 ISSTVASLRLDSVASAGFGISRSKTADLIRGEKVAVNWETATNPARLVKEGDTISIRGKG 239

Query: 300 RIKIGEI-NSTRKGKFAVELIQYL 322
           R+ + ++ N+T+K +  + L +++
Sbjct: 240 RVVVEKVGNTTKKDRIHILLKKFI 263


>gi|354582307|ref|ZP_09001209.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
 gi|353199706|gb|EHB65168.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
          Length = 260

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/252 (35%), Positives = 128/252 (50%), Gaps = 14/252 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAER 134
           E V    E    A    EV  +DFL P         LE L     DV A  +GGY  AER
Sbjct: 15  EFVDRAWEWVANAGQYHEVKLTDFLDP----RQRFILETLVNRHPDVHAAFEGGYADAER 70

Query: 135 CRLSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
            R  +  P+   L  +   +  LSIT G+       HGD++GSILG GI R KIGDI + 
Sbjct: 71  VRAIIA-PDYRELDGEDFKIKVLSITSGDQKLLELEHGDYMGSILGLGIKRSKIGDIHVI 129

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
            E G   +V  E+  +L  +L +V  V V    +P+  L+    + ++     +SLR+D 
Sbjct: 130 -ESGCHAVVSEEIGSFLNLNLSQVHRVHVMTELLPMDKLQAAETKLETMDITVSSLRLDG 188

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TR 310
           +AS   ++SR+K+V  I  G  RVNW       T L+ GD+VS+ G GR  + EI   T+
Sbjct: 189 IASDAHRISRTKIVVPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGMGRFAVLEIGGLTK 248

Query: 311 KGKFAVELIQYL 322
           KG++ V++ +Y+
Sbjct: 249 KGRYRVKVGKYV 260


>gi|373455824|ref|ZP_09547647.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
           YIT 11850]
 gi|371934496|gb|EHO62282.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
           YIT 11850]
          Length = 263

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 6/242 (2%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
            +L++A      R      F+ P   +        +  VK+ A GGY +AER R++    
Sbjct: 24  RLLDLADAVDRGRPFAVGPFMAPFARQIGQTIAAHMKTVKSTAFGGYHEAERVRIAFQRV 83

Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
           +         + LS+T +  ++   H D LGS++G GI R   GDI++QG  G Q +V  
Sbjct: 84  DYDGPVDFSESLLSVTWDGRYRLIGHRDVLGSLMGLGIDRSVTGDILMQG-AGCQIVVDS 142

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLS 260
            + D+L+ + +KV  V V    IPL   + +PP+   K  +   ASLR+DA+ +AGF +S
Sbjct: 143 AMKDWLMDNFKKVAMVPVKVEEIPLS--DIQPPKQTAKEVRATVASLRLDAVGAAGFGIS 200

Query: 261 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELI 319
           RSK+V  + +    VNW        T++ GDI+S+ G+GRI+I  E   +RKG+  + + 
Sbjct: 201 RSKMVAAVEDERTEVNWQPAKSASQTVKAGDIISIRGRGRIEIKEETGRSRKGRTGLLIY 260

Query: 320 QY 321
           +Y
Sbjct: 261 RY 262


>gi|337748291|ref|YP_004642453.1| RNA-binding S4 domain-containing protein [Paenibacillus
           mucilaginosus KNP414]
 gi|336299480|gb|AEI42583.1| RNA-binding S4 domain protein [Paenibacillus mucilaginosus KNP414]
          Length = 260

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 157
           +DFL P         + +  DV+ +  GG+P AER R  V  P+   L S+   +  LSI
Sbjct: 36  TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVA-PDYRVLESEDPGITLLSI 94

Query: 158 TG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           T  +   +   HGD++G+IL  GI REK+GDI ++ + G   LV  E+ADY   +L +V 
Sbjct: 95  TSPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPD-GCHILVASEIADYFRLNLSQVH 153

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V    +PL  L++   + +  +   ASLR+D + S  ++LSR+K++  I  G  +VN
Sbjct: 154 RVHVMTEVLPLERLQFTEVKFEELQLSVASLRLDGIVSDVYRLSRAKVLVPIKAGRCKVN 213

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           W         LR GD+VS+ G GR K+ EI   T+KG+  V++ +Y
Sbjct: 214 WKQEEDPSKPLREGDVVSLQGAGRFKVLEIEGVTKKGRTRVKIGKY 259


>gi|72382767|ref|YP_292122.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
 gi|72002617|gb|AAZ58419.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
          Length = 262

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 4/246 (1%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           +E++ +L  A +A S R  + S FL+  +++E       L D+  + +GG+P AER R+ 
Sbjct: 16  KELETLLHFAEKALSERTAIWSPFLSAQLIEEVKDRFNNLNDISLLFEGGFPSAERKRIC 75

Query: 139 VGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
                     P I   +  + I GNF F      DF   I       + IGDI L  ++G
Sbjct: 76  FLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQSDFRDLIHELHDQADDIGDIWLIRDRG 135

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALAS 254
           AQ +   + AD +   + K+  V +    + L  +E    R  K   T+EAS R+DA+AS
Sbjct: 136 AQAICTKKCADSINQKIGKLREVEIIIHALDLNEMEIPFNRPEKVINTVEASTRIDAIAS 195

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKF 314
           AGF LSRSK++  I  G +R+NW    +   ++  GD++ +  KG +KI  I+ T+K ++
Sbjct: 196 AGFGLSRSKIIKQIKEGCLRLNWALNDQPSKSVNIGDLIHLEKKGSLKILNIDKTKKERW 255

Query: 315 AVELIQ 320
            ++L++
Sbjct: 256 RIKLLR 261


>gi|255280915|ref|ZP_05345470.1| S4 domain protein [Bryantella formatexigens DSM 14469]
 gi|255268363|gb|EET61568.1| S4 domain protein [Marvinbryantia formatexigens DSM 14469]
          Length = 268

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 26/270 (9%)

Query: 76  NAIEEV--KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           N  EE+  K +LE+A++A SR  V  +DFL    L     +   L+ VK V  GGY QAE
Sbjct: 2   NYEEELFQKRLLELAKKADSRNIVTFTDFLNLNELNIYHQSAGALSFVKCVGFGGYEQAE 61

Query: 134 RCRLSVGHPEAL---TSD----PDIVAALSITGNF-----GFQP--------CSHGDFLG 173
           R  L+   P+AL   T D     D   AL  +  +       +P         SH DFLG
Sbjct: 62  RQILAF-IPDALCYFTEDFADRTDFSVALRQSVRYPISCLRIEPQNKKFSGSLSHRDFLG 120

Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
           + L TGI R  IGDI+++ E  A    +  +AD+L  +L +V N  V+  ++P   ++Y 
Sbjct: 121 AALNTGIERSTIGDILVE-ENAAWMFCLERMADFLSEALTRVRNTPVNVRQVPPEKIDY- 178

Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
            P+ +  +   AS+R+D+L +  F  SRS LV LI  G V VN   +T NG  ++  D++
Sbjct: 179 APKYELVRGSVASVRLDSLLALAFGASRSSLVGLIEGGKVFVNGRLITSNGYKVKENDLI 238

Query: 294 SVSGKGRIK-IGEINSTRKGKFAVELIQYL 322
           S  G GR + +G  +ST+KG+   E+ +Y+
Sbjct: 239 SARGLGRFRYLGVSSSTKKGRLIAEIEKYI 268


>gi|333897310|ref|YP_004471184.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|333112575|gb|AEF17512.1| RNA-binding S4 domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 247

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 19/246 (7%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           +M       R    +DFL+    K  +  ++K  D+     GG+ +AER +++  +P  L
Sbjct: 10  DMINWVQKNRRDRFTDFLSMKDQKILLKLIDKHDDIDCRFDGGFKEAER-KIACIYPSFL 68

Query: 146 T-SDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
             SD    D +  + I G+      SH D LGS+LG GI REKIGDII + E     +V 
Sbjct: 69  AISDGEHFDAIKGIRINGDL--IRLSHRDVLGSLLGLGIKREKIGDIIKRQEI-CDVIVH 125

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLL-----ALEYEPPRTKSFKTIEASLRVDALASAG 256
            ++AD+++ +L+K+G   V  + I L       +EYE       KT  AS+R+D++ +AG
Sbjct: 126 RDIADFVLMNLKKIGREKVIVSSIDLDEVIEPVIEYE-----DIKTTVASVRLDSIIAAG 180

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFA 315
           FK+SR+K  +LI  G   VNW T       ++ GDI+S+ G GRIK  EI  ++RKG+  
Sbjct: 181 FKISRTKASDLIKAGLTEVNWETNISPSFEVKEGDIISLRGYGRIKFQEILGTSRKGRVY 240

Query: 316 VELIQY 321
           V +++Y
Sbjct: 241 VHILKY 246


>gi|315646047|ref|ZP_07899168.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
 gi|315278808|gb|EFU42122.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
          Length = 260

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 8/252 (3%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQA 132
           ++  E V    E    A    E   +DFL P    + ES+  + +  DV A+ QGG+  A
Sbjct: 11  RDEREFVDRAWEWVVNAGQYHEAKLTDFLDPRQRFILESL--VNRHPDVHALFQGGHADA 68

Query: 133 ERCRLSVGHPEALTSDPDI-VAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
           ER R  +          D+ +  LSI+ G+  F    HGD++GSILG GI R KIGDI +
Sbjct: 69  ERVRALIAPDYRDLEGEDLKMKVLSISSGDQKFLELDHGDYMGSILGLGIKRSKIGDIHV 128

Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
             E G   +V  +++ +L  +L +V  V V    +PL  L+       +     +S+R+D
Sbjct: 129 L-EDGCHTVVAEDISSFLHLNLSQVHRVHVMTELLPLDKLQVTHTNFDTMDITASSMRLD 187

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-T 309
            +AS  +++SR+K+V  I  G  RVNW       T L+ GD+VS+ G GR K+ E    T
Sbjct: 188 GIASDAYRISRTKIVVPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGFGRFKVLETGGLT 247

Query: 310 RKGKFAVELIQY 321
           +KG++ +++ +Y
Sbjct: 248 KKGRYRIKVGKY 259


>gi|375309381|ref|ZP_09774662.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
           Aloe-11]
 gi|375078690|gb|EHS56917.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
           Aloe-11]
          Length = 260

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
           +DFL P  L   E++ + E    ++    GGY  +ER R  +    +   D D+ +  LS
Sbjct: 36  TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93

Query: 157 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           I+ +        HGD+LG+ILG GI R KIGDI +  + G   LV  E++D+++  L++V
Sbjct: 94  ISSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFIMLHLQQV 152

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
             V V    +P  +L  +    +      ASLR+D +AS  +KLSRSK++  I  G  RV
Sbjct: 153 HRVHVWTELLPSESLRTKEAELEPLDLTVASLRLDGIASDVYKLSRSKILTPIRAGRCRV 212

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 322
           NW       T+L+ GD+VS+ G GR K+ E +  T+KG+F V++ +++
Sbjct: 213 NWKVEENPSTSLKVGDVVSMQGFGRFKVLETDGMTKKGRFRVKIGKFV 260


>gi|260887802|ref|ZP_05899065.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838698|ref|YP_004413278.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
 gi|260862478|gb|EEX76978.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746462|gb|AEB99818.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
          Length = 261

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 2/197 (1%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GGY  AER R    H +   +    +A +       F   SH D LG+I+G G+ RE IG
Sbjct: 66  GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAVWKDAFAHISHRDVLGAIMGLGVEREIIG 125

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
           DI +Q +  A+ + V  +AD+L+T+  + G   V+C+   L AL     R K  +   AS
Sbjct: 126 DIQIQ-QGAARIVTVENMADFLLTNCVQFGAAHVTCSLGELSALLPREERCKEIRATVAS 184

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           LR D++A+AGF +SRS+    I+   +++NW +V      ++ GD++S+ G+GR+++ EI
Sbjct: 185 LRADSIAAAGFGMSRSRAAADIAAEKLKLNWQSVKSASQAVKEGDVLSMRGRGRLEVKEI 244

Query: 307 N-STRKGKFAVELIQYL 322
              T+KG+ +V L +YL
Sbjct: 245 RGQTKKGRISVLLHRYL 261


>gi|258646841|ref|ZP_05734310.1| S4 domain protein [Dialister invisus DSM 15470]
 gi|260404278|gb|EEW97825.1| S4 domain protein [Dialister invisus DSM 15470]
          Length = 263

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
           F++P   +        +  V     GGY +AER R++    +        + AL +T + 
Sbjct: 43  FMSPFAAQVGQTIAAHMKTVAVKTSGGYHEAERIRVAFARNDYDGLVDFGLTALKVTWDD 102

Query: 162 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
            ++   H D LG+++G GI R  +GDI++QG  G Q +    +A+++  +  KV  VSV 
Sbjct: 103 RYRLIGHRDVLGALMGLGIDRAVLGDILMQG-AGCQIVADSSMAEWIKRNFLKVAMVSVQ 161

Query: 222 CTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
              I L   E EPP+   +  +   ASLR+DA+ +AGF +SRSK+V  + +G   +NW  
Sbjct: 162 IKEISLE--ELEPPKKTAREVRATVASLRLDAVGAAGFGISRSKMVQCVESGRTEINWQP 219

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           V     T++ GD++S+ GKGRI+I E+   +RKG+  + + +Y
Sbjct: 220 VKSASQTIKAGDVISIRGKGRIEIREVTGMSRKGRTGLLIDRY 262


>gi|310642972|ref|YP_003947730.1| RNA-binding s4 domain-containing protein [Paenibacillus polymyxa
           SC2]
 gi|309247922|gb|ADO57489.1| RNA-binding S4 domain-containing protein [Paenibacillus polymyxa
           SC2]
 gi|392303787|emb|CCI70150.1| putative RNA-binding protein ylmH [Paenibacillus polymyxa M1]
          Length = 260

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 130/242 (53%), Gaps = 8/242 (3%)

Query: 86  EMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           E    A +  E   +DFL P    + E++ + E    ++    GGY  +ER R  +    
Sbjct: 22  EWISHAGAYHEQKLTDFLDPRQQYILETLASKEDKVTIRV--DGGYTASERKRALIAPDY 79

Query: 144 ALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
           +   D ++ +  LSI+ +        HGD+LG+ILG GI R KIGDI +  + G   LV 
Sbjct: 80  SYLDDEEMGIQVLSISSDDHKINTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVA 138

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            E+ D++   L++V  V V    +P+ +L  +    ++     ASLR+D +AS  +KLSR
Sbjct: 139 SEIGDFITMHLQQVHRVHVWTELLPVASLRTKEVALEAMDLTVASLRLDGIASDVYKLSR 198

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQ 320
           SK++  I  G  RVNW       T+L+ GD++S+ G GR K+ E +  T+KG+F V++ +
Sbjct: 199 SKILTPIRAGRCRVNWKVEENPSTSLKVGDVISMQGFGRFKVLETDGMTKKGRFRVKIGK 258

Query: 321 YL 322
           ++
Sbjct: 259 FV 260


>gi|255659719|ref|ZP_05405128.1| S4 domain protein [Mitsuokella multacida DSM 20544]
 gi|260848293|gb|EEX68300.1| S4 domain protein [Mitsuokella multacida DSM 20544]
          Length = 264

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 114/198 (57%), Gaps = 3/198 (1%)

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGY  AER R    H + A T     +A L  + N  F   SH D LG+++G GI R+++
Sbjct: 68  GGYQGAERARAMYIHEDFAGTPSGFDIACLKASWNGQFARLSHRDVLGALMGLGIERDRL 127

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GD+++  +   + L   ++A+YL+ +L K+G V VSC    L  +     R K  +   A
Sbjct: 128 GDLLVTADS-VRILCDSKMAEYLLQNLTKIGAVGVSCEMADLAGIAPREERCKEIRATVA 186

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+D++A++GF  SRS+    I+   +++NW  V     T++ GDI+S+ G+GR+++ E
Sbjct: 187 SLRIDSIAASGFGSSRSRAAADIAADKMKLNWQPVKSASQTVKEGDIISMRGRGRLEVAE 246

Query: 306 I-NSTRKGKFAVELIQYL 322
           +   T+KG+  V L +Y+
Sbjct: 247 VRGQTKKGRTVVVLKRYI 264


>gi|402815868|ref|ZP_10865460.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
 gi|402506908|gb|EJW17431.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
          Length = 263

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 6/240 (2%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           E   RA+   E+  +DFL P         + + ADV+    GG+  AER R  +  P+ +
Sbjct: 24  EWVERAAQLHEIRRTDFLDPRQAFILTTLVNRNADVQLRLDGGHEHAERKRALIA-PDYV 82

Query: 146 TSDPDIVAA--LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
            ++ + +    L IT  +  ++   HGDFLG++LG GI R+KIGDI +  ++    ++  
Sbjct: 83  YAEGEEMGMHILQITSLDRNWEQLEHGDFLGAVLGLGIKRDKIGDIHVSDDR-CHIVITE 141

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
           E+  +L T L +V  V+V    +PL  L+      K      ASLR+D +AS  F+LSR+
Sbjct: 142 EIGAFLDTHLRQVHRVNVLTDIVPLSELQATHAELKMMTLSVASLRLDGIASDVFRLSRT 201

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           K+V  I  G  +VNW       T L  GD+VS+ G GR K+ +I   ++KG+  + +  Y
Sbjct: 202 KIVTPIKAGRCKVNWKVEENPSTQLHAGDVVSLQGFGRFKVIDIEGVSKKGRMRISVGTY 261


>gi|383753717|ref|YP_005432620.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
           lactilytica TAM6421]
 gi|381365769|dbj|BAL82597.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
           lactilytica TAM6421]
          Length = 264

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 3/225 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAALSIT 158
           S FL P   + +        +++    GGY  AER R    H + A T     +  +   
Sbjct: 41  SGFLDPFGQEIAETVAANYGNIRVDFAGGYQGAERARAIFIHEDFAGTPTSFGIDCIEAK 100

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
            N  F   SH D LG+++G GI R+ IGD+++  +   + +   ++AD+L+ +L+K+G V
Sbjct: 101 WNGQFARLSHRDVLGALMGQGIERDTIGDLLVTNDS-VKIICEEKMADFLLANLDKIGAV 159

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
            V C R  L ++  +  R K  +   ASLRVD++A+AGF  SRSK  + I+   +++NW 
Sbjct: 160 GVECQRADLSSIAPKEERCKEIRATVASLRVDSIAAAGFGSSRSKAASDIAADKLKINWQ 219

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
                   ++ GDI+S+ G+GR+++ E+  +T+KG+  V L +YL
Sbjct: 220 PAKSASQNVKEGDILSMRGRGRLEVAEVRGTTKKGRTVVVLKRYL 264


>gi|390453149|ref|ZP_10238677.1| RNA-binding s4 domain-containing protein [Paenibacillus peoriae
           KCTC 3763]
          Length = 260

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
           +DFL P  L   E++ + E    ++    GGY  +ER R  +    +   D D+ +  LS
Sbjct: 36  TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93

Query: 157 ITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           I+ +        HGD+LG+ILG GI R KIGDI +  + G   LV  E++D++   L++V
Sbjct: 94  ISSDDQKIGTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFITLHLQQV 152

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
             V V    +PL +L  +    +      ASLR+D +AS  +KLSRSK++  I  G  RV
Sbjct: 153 HRVHVWTELLPLESLRTKEAELEPLDLTVASLRLDGIASDVYKLSRSKILTPIRAGRCRV 212

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 322
           NW       T+L+ GD++S+ G GR K+ E +  T+KG+F V++ +++
Sbjct: 213 NWKVEENPSTSLKVGDVISMQGFGRFKVLETDGMTKKGRFRVKIGKFV 260


>gi|375084577|ref|ZP_09731440.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
           11815]
 gi|374568025|gb|EHR39220.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
           11815]
          Length = 261

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 132/245 (53%), Gaps = 2/245 (0%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E V  +++     +  R+   +DFL P   + +   +     +     GGY  AER   +
Sbjct: 18  EIVIKLIDAVEAVNKTRKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCAN 77

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             H + +      ++ +  T N  F   SH D LG+++G GI RE+IGD+++      + 
Sbjct: 78  FVHEDFMGKPSYNISVVKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLIT-LGMVKI 136

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +   ++AD+++ +L ++G+  VSC    L  +     R K   +  ASLR+D++A++GF 
Sbjct: 137 ICTTKMADFILQNLTQIGSAKVSCELDNLETIAPREERCKEITSTVASLRIDSIAASGFG 196

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 317
            SRSK+ ++I    +++NW TV      ++ GDI+S+ G+GR+++ E+  +T+KG+  V 
Sbjct: 197 ASRSKMSSMIDAEKLKLNWQTVKSASQMVKQGDIISIRGRGRLEVAEVRGTTKKGRTVVL 256

Query: 318 LIQYL 322
           L +YL
Sbjct: 257 LKRYL 261


>gi|332798174|ref|YP_004459673.1| RNA-binding S4 domain-containing protein [Tepidanaerobacter
           acetatoxydans Re1]
 gi|438001091|ref|YP_007270834.1| FIG001583: hypothetical protein, contains S4-like RNA binding
           domain [Tepidanaerobacter acetatoxydans Re1]
 gi|332695909|gb|AEE90366.1| RNA-binding S4 domain protein [Tepidanaerobacter acetatoxydans Re1]
 gi|432177885|emb|CCP24858.1| FIG001583: hypothetical protein, contains S4-like RNA binding
           domain [Tepidanaerobacter acetatoxydans Re1]
          Length = 254

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 136/246 (55%), Gaps = 10/246 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I  +AR+   ++    S+FL P   + + M       +     GGY +AER ++ V 
Sbjct: 13  IRDIFTIARKNRGKK---ASNFLDPGQQQMAEMVARSFPGMGFYFNGGYEKAER-KILVA 68

Query: 141 HPEALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +PE +  +P  + + AL I      +   H D+LG+IL  GI REK+GDI++ G+  A  
Sbjct: 69  YPEDMLDEPFREPLGALRIIPKNSDEHPGHRDYLGAILALGINREKLGDILV-GKTSADI 127

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGF 257
           +V  E+ +Y+  +L+K+ NVSV    I L  L  +P R  K  K+  ASLR+DA+A   F
Sbjct: 128 VVKQEIMEYIGLNLKKIRNVSVEVEEISLKEL-LQPERPYKELKSTVASLRLDAIAGIAF 186

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SRSK+   I   ++R+N+  V      ++ GDI+S +  GR K+ E+   ++KG+  V
Sbjct: 187 GISRSKMAPFIKGENIRLNFKVVKDPAALVKEGDIISANRLGRAKVVEVGGRSKKGRIYV 246

Query: 317 ELIQYL 322
           ++ +Y+
Sbjct: 247 KIHRYI 252


>gi|261405680|ref|YP_003241921.1| RNA-binding S4 domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261282143|gb|ACX64114.1| RNA-binding S4 domain protein [Paenibacillus sp. Y412MC10]
          Length = 261

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQA 132
           K+  E V    E    A    E   +DFL P    + ES+  + +  DV A+  GG+  A
Sbjct: 12  KDEREFVDRAWEWVVNAGQYHETKLTDFLDPRQRFILESL--VNRHPDVHALFDGGHADA 69

Query: 133 ERCRLSVGHPE--ALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
           ER R  +  P+  AL  +   +  LSI+ G+  F    HGD++GSILG GI R KIGDI 
Sbjct: 70  ERVRAMIA-PDYRALEGEDLKMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDIH 128

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
           +  + G   +V  +++ +L  +L +V  V V    +PL  L+      ++     +S+R+
Sbjct: 129 VLAD-GCHAVVADDISAFLHLNLSQVHRVHVMTDLLPLDKLQVARTNFEAMDITVSSMRL 187

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS- 308
           D +AS  +++SR+K++  I  G  RVNW       T L+ GD+VS+ G GR K+ E    
Sbjct: 188 DGIASDAYRISRTKIIVPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGFGRFKVLETGGL 247

Query: 309 TRKGKFAVELIQY 321
           T+KG++ +++ +Y
Sbjct: 248 TKKGRYRIKVGKY 260


>gi|402833534|ref|ZP_10882147.1| S4 domain protein [Selenomonas sp. CM52]
 gi|402280027|gb|EJU28797.1| S4 domain protein [Selenomonas sp. CM52]
          Length = 261

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GGY  AER R    H +   +    +A +       F   SH D LG+I+G G+ RE IG
Sbjct: 66  GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAQWKDAFAHISHRDVLGAIMGLGVEREIIG 125

Query: 187 DIILQGEKGAQFLVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           DI +Q  +GA  +V  E +AD+L+T+  + G   V+C+   L AL     R K  +   A
Sbjct: 126 DIQIQ--QGAARIVTAENMADFLLTNCVQFGAAHVTCSLGELSALLPREERCKEIRATVA 183

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR D++A+AGF +SRS+    I+   +++NW +V      ++ GD++S+ G+GR+++ E
Sbjct: 184 SLRADSIAAAGFGMSRSRAAADIAAEKLKLNWQSVKSASQAVKEGDVLSMRGRGRLEVKE 243

Query: 306 IN-STRKGKFAVELIQYL 322
           I   T+KG+ +V L +YL
Sbjct: 244 IRGQTKKGRISVLLHRYL 261


>gi|366166912|ref|ZP_09466667.1| RNA-binding S4 protein [Acetivibrio cellulolyticus CD2]
          Length = 263

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LTSDPDIVAALSI- 157
           +DFL P +       LE       +  GGY  AER  ++       L  +P++     + 
Sbjct: 38  TDFLDPHLQSVVSKCLESNNVGNYLFYGGYDGAERAVVAFCPSNMPLIQEPELAGLFKVL 97

Query: 158 -TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
                  +  +H D+LGS++G GI REKIGDI+++ E  +  + + ++AD++  +L+KVG
Sbjct: 98  KISLMHRENMTHRDYLGSLMGLGIKREKIGDILVKDEH-SLVVALNDIADFIRHNLDKVG 156

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           NV V    + + +L     + K  +T  ASLR+D++ASAGF +SRSK+ + I    V +N
Sbjct: 157 NVKVEVEYLDVESLNTYEQKVKEIRTTVASLRLDSVASAGFGMSRSKIADFIKAEKVNLN 216

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
           W T       ++ GD++S+ GKGR+ + EI  +TRK + +V L +++
Sbjct: 217 WETTPSLTKLVKEGDLISIRGKGRVVLQEIGKTTRKDRISVCLKKFI 263


>gi|312899018|ref|ZP_07758405.1| S4 domain protein [Megasphaera micronuciformis F0359]
 gi|310619925|gb|EFQ03498.1| S4 domain protein [Megasphaera micronuciformis F0359]
          Length = 261

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 2/260 (0%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N D++++     +  E    ++++A   +  R    S+F +P  ++           ++ 
Sbjct: 3   NRDNIIRYYKGMDNGEFAARLIDLADSTNKGRPYAVSEFASPGAVQIGETVKAHATGLEL 62

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
              GGY  AER +L+    +        + A  +T +  ++   H D LGS+ G GI R 
Sbjct: 63  RINGGYEGAERVKLAFVRQDYDGPVDFGITACRLTWDVRYRLLGHRDVLGSLTGLGIDRS 122

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           + GDII+  E GA  L    L DYL  +LEK+  V+V+ T IPL  +     + K  KT 
Sbjct: 123 RFGDIIMH-EDGAVILADSTLYDYLRQNLEKIAMVTVTVTEIPLSDIPPRKEKVKEVKTT 181

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            ASLR+DA+ S+GF +SR+K    I    V+VNW         +  G ++S+ GKGR+++
Sbjct: 182 VASLRLDAIVSSGFGISRTKAAEAIKGERVQVNWQPAKGPAQEVGAGTVISLRGKGRMEV 241

Query: 304 GEINST-RKGKFAVELIQYL 322
            EI  T RKG+  V L +++
Sbjct: 242 AEITGTSRKGRTGVLLKRFI 261


>gi|304316676|ref|YP_003851821.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778178|gb|ADL68737.1| RNA-binding S4 domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 246

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 133/240 (55%), Gaps = 8/240 (3%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-- 143
           ++A+     +   ++DFL+    K  +  + +  D+     GG+  AER +++  +P+  
Sbjct: 10  DIAKWVQKNKRDRYTDFLSLRDQKILLKLMTQFDDINCGFIGGFDAAER-KIAHIYPKFR 68

Query: 144 -ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
            A+ +    ++A+ I G+      SH D LGSILG GI R+K+GDII + E     +V  
Sbjct: 69  NAVDAYKAPISAIRINGDLS--KLSHRDVLGSILGLGIKRDKVGDIIKRQE-SCDIVVHN 125

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
           ++A Y++ +L K+G   V+   I L  +     +     T  AS+R+D++ ++GFKLSR+
Sbjct: 126 DIASYILINLHKIGKERVNVYSINLDEIMEPEVKYDDINTTVASIRLDSIIASGFKLSRT 185

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 321
           K   LI  G   VNW T  +    ++ GDIVS+ G+GRIK  E I +T+KG+  + +++Y
Sbjct: 186 KASELIKAGLAEVNWETKLEPSFEIKEGDIVSLRGRGRIKFEEIIGTTKKGRIYIHILKY 245


>gi|290969124|ref|ZP_06560652.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|335049281|ref|ZP_08542281.1| S4 domain protein [Megasphaera sp. UPII 199-6]
 gi|290780844|gb|EFD93444.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|333763554|gb|EGL40998.1| S4 domain protein [Megasphaera sp. UPII 199-6]
          Length = 261

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--- 139
            ++E+A      R    SDF++P  ++       +  DV     GGY  AER R++    
Sbjct: 22  RLIELAEYVCKGRPYAVSDFVSPGAVQIGETICAQDTDVHLQCDGGYEGAERVRMAFVRN 81

Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
           G+  A+      + A  +  +  ++  +H D LGS++G G+ R K GDII+  E GA  L
Sbjct: 82  GYEGAVDFS---IRACRLVWDSRYRLLTHRDVLGSLMGLGVERAKFGDIIM-AEDGAVLL 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +   +  Y+   L+KV  V+V      L  +     + K  KT  ASLR+DA+ ++GF +
Sbjct: 138 LDANMESYVQQHLQKVSIVTVQIAPYDLKEIAPRQKKVKEIKTTVASLRLDAIVASGFGI 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR+K    I    V++NW  +  +   +R GD +S+ GKG++++GEI   +RKG+  V L
Sbjct: 198 SRTKAAAAIKGERVQLNWQPIKSSSREVRVGDCISLRGKGKMEVGEITGISRKGRTGVLL 257

Query: 319 IQYL 322
            +Y+
Sbjct: 258 KRYI 261


>gi|390935121|ref|YP_006392626.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
           saccharolyticum JW/SL-YS485]
 gi|389570622|gb|AFK87027.1| RNA-binding S4 domain protein [Thermoanaerobacterium
           saccharolyticum JW/SL-YS485]
          Length = 247

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 19/232 (8%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL----TSDPDIVAAL 155
           +DFL+    K  +  + K  D+     GG+ +AER +++  +P  L        +++  +
Sbjct: 24  TDFLSMKDQKILLKLIAKHDDIDCRFDGGFKEAER-KIACIYPSLLPIYDGEHFNVIKGI 82

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            I G+      SH D LGS+LG GI REKIGDII + E     +V  ++ADY++ +L+KV
Sbjct: 83  RINGDL--TKLSHRDVLGSLLGLGIKREKIGDIIKRQEI-CDVIVHNDIADYVLMNLKKV 139

Query: 216 GNVSVSCTRIPLL-----ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           G   V  + I L       +EYE       KT  AS+R+D++ ++GFK+SR+K   +I  
Sbjct: 140 GREKVIVSSIDLDEVIEPVIEYE-----DIKTTVASIRLDSIVASGFKISRTKASEMIKA 194

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           G   VNW T       ++ GDI+S+ G GRIK+ E+  ++RKG+  V +++Y
Sbjct: 195 GLTEVNWETNMSPSFEVKEGDIMSLRGYGRIKLQEVLGTSRKGRVYVHILKY 246


>gi|253576145|ref|ZP_04853477.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844488|gb|EES72504.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 261

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 130/250 (52%), Gaps = 14/250 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
           V    E    A    EV  SDFL P         LE LA    D +    GGY  AER R
Sbjct: 18  VDRAWEWVVNAGDYHEVKLSDFLDP----RQCYILETLANRHPDTQIRLDGGYEGAERRR 73

Query: 137 LSVGHPEA--LTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
             +  P+   L+ +P  +  L IT G+  F    HGD+LG+ILG G+ R+KIGDI ++ E
Sbjct: 74  ALIA-PDYRDLSQEPMGLKVLDITSGDQKFLALQHGDYLGAILGLGLKRDKIGDIHVR-E 131

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
            G   +V  E+A +L  +L +V  V+V    + L  L       +  +   ASLR+D +A
Sbjct: 132 DGCHVIVAEEIAPFLQMNLHQVHRVNVMTDVLNLSELRTMEKELEPMELTVASLRLDGIA 191

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKG 312
           S  F+LSR+K++  I  G  RVNW T     T L+ GD+V++ G GR K+ E    T+KG
Sbjct: 192 SDVFRLSRNKVLLPIKAGRCRVNWRTEEDPSTPLKVGDVVALQGFGRFKVLEAGGLTKKG 251

Query: 313 KFAVELIQYL 322
           +  V++ +++
Sbjct: 252 RHRVKIGKFV 261


>gi|433654813|ref|YP_007298521.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
           thermosaccharolyticum M0795]
 gi|433293002|gb|AGB18824.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
           thermosaccharolyticum M0795]
          Length = 247

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 133/241 (55%), Gaps = 9/241 (3%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           ++A+     +   ++DFL+    K  +  +++  D+     GG+ +AER +++  +P+  
Sbjct: 10  DIAKWVQKNKRDRYTDFLSMREQKILLKLIKQFDDINCRFDGGFEKAER-KMAHIYPKFK 68

Query: 146 TSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
             + +    ++ A+ I+G+      SH D LGSILG GI R+K+GDII + E     +V 
Sbjct: 69  NVEDETHIVLLNAIRISGDLS--KLSHRDVLGSILGLGIKRDKVGDIIKRQE-NCDVIVH 125

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            ++  Y++ +L K+G   V+   I L  +     +     T  AS+R+D++ ++GFK+SR
Sbjct: 126 NDIVGYILMNLNKIGKERVNVNSIELDEVMEPEIKYDDINTTVASIRLDSIVASGFKISR 185

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQ 320
           +K   +I  G   VNW T  +    ++ GDIVS+ G GRIK  E I +T+KG+  + +++
Sbjct: 186 TKASEMIKAGLAEVNWETKLEPSFEIKEGDIVSLRGHGRIKFEEIIGTTKKGRIYIHILK 245

Query: 321 Y 321
           Y
Sbjct: 246 Y 246


>gi|422343049|ref|ZP_16423977.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
 gi|355379005|gb|EHG26181.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
          Length = 264

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 7/252 (2%)

Query: 73  GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
           G++ AI     +L++A      R+   S FL P   + +         ++    GGY  A
Sbjct: 18  GEETAI----RLLDLAESVIKTRKFRISPFLDPYGQEIAETICANYEGIQLDFDGGYAGA 73

Query: 133 ERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           ER R  + H + A T D   +  ++   N  F   SH D LG+++G GI RE IGDI L 
Sbjct: 74  ERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESIGDI-LP 132

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
           G   A+ L   +L+D+++ +L  +G   V  T      +     RTK  +   ASLR+DA
Sbjct: 133 GADAAKILCDAKLSDFIVNNLTMIGAAGVKATVEDTAEIAPREERTKEIRATVASLRLDA 192

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 310
           +A+AGF +SRS+  + I+   V++NW +      T++ GD++S+ G+GR+++ E+   T+
Sbjct: 193 VAAAGFGVSRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRVEVTEVRGQTK 252

Query: 311 KGKFAVELIQYL 322
           KG+  V L ++ 
Sbjct: 253 KGRTVVVLKRFF 264


>gi|348025437|ref|YP_004765241.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
 gi|341821490|emb|CCC72414.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
          Length = 261

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 136/265 (51%), Gaps = 12/265 (4%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N D +++     +  E    ++++A   +  R    S+F++P  ++        +  +  
Sbjct: 3   NRDRIIRYYQGTDNGELAARLIDLADSTAKGRPYAVSEFVSPGAVQIGETIQAHVPSLVL 62

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-----VAALSITGNFGFQPCSHGDFLGSILGT 178
              GGY  AER +L+      +++D D      + A  ++ +  ++   H D LGS++  
Sbjct: 63  RTFGGYEGAERVKLAF-----VSADYDGPVDFGITACRLSWDDRYRLLGHRDVLGSLMSL 117

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           G+ RE+ GDII+Q E GA  L   +L  YL  +  K+  VS++   +PL  +     + K
Sbjct: 118 GVGRERFGDIIMQ-EAGAILLADTKLVPYLQQNFTKIAMVSIAIEEMPLEDIAPRQEKVK 176

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
             KT  ASLR+DA+AS+GF +SR+K    I    V+VNW         +  GD++S+ GK
Sbjct: 177 EIKTTVASLRLDAIASSGFGISRTKAAEAIKGDRVQVNWQPAKGPSQDVSEGDVISLRGK 236

Query: 299 GRIKIGEINST-RKGKFAVELIQYL 322
           GR+++ EI  T RKG+  V L +Y+
Sbjct: 237 GRMELAEITGTSRKGRIGVLLKRYM 261


>gi|227509386|ref|ZP_03939435.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191098|gb|EEI71165.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 264

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           ++FL P  L      + +   +     GGY  AE  R ++ +PE  T   D   + A  I
Sbjct: 38  TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +HG  LGS++G GI R  +GDII  G K  QF+V  E+ADY+   ++ +G 
Sbjct: 97  DYPSKFATLAHGKILGSLMGAGIERNVVGDIITDGLKW-QFMVQSEMADYVKAQVDHIGK 155

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           + V    I    +      +++  T  +SLRVDAL S GF +SR     L+  GDVR+NW
Sbjct: 156 IKVKLEDISPEGVITPVDESETLTTTVSSLRVDALISDGFHISRHHAKELVDAGDVRINW 215

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
              T+    L T DI+SV G GRI I EI   T+K K  + +  Y
Sbjct: 216 VDTTRPDFELSTKDIISVRGYGRIVIKEITGMTKKDKIRIIISVY 260


>gi|148242945|ref|YP_001228102.1| hypothetical protein SynRCC307_1846 [Synechococcus sp. RCC307]
 gi|147851255|emb|CAK28749.1| Conserved hypothetical protein, contains S4-like domain
           [Synechococcus sp. RCC307]
          Length = 261

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 6/255 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DLL+G  D  A+E +    E+  R     +   S FLT P  +E+      L ++   + 
Sbjct: 6   DLLEGARDPQALEALIQQAEVVLRTY---QPSWSAFLTGPQREEAEERFAPLGELHLRSA 62

Query: 127 GGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIARE 183
           GG+PQAER  L +   +  A   +P  +A + ++GNF F P        +++    I   
Sbjct: 63  GGFPQAERRLLQISRSDQAADAGEPAPLALVEVSGNFLFDPAEPTAIRAALIDQHSIDPL 122

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
            +GD++++G++GA  +V   +A+ L     +V +V           L  +   +KS  ++
Sbjct: 123 HLGDVLVRGDRGALVIVTSAMAERLQEQSLQVRSVDCQLQAGDWSRLPSQASSSKSLTSV 182

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           EASLR+DA+ASAGF +SRSK+   I  G +RV+W  VT     L+ G+ V + G+G + +
Sbjct: 183 EASLRLDAIASAGFGVSRSKMATWIRQGRIRVDWAVVTTPSRELQNGERVQLEGRGELVL 242

Query: 304 GEINSTRKGKFAVEL 318
             ++ T++ ++ +++
Sbjct: 243 DRVDRTKRDRWRLQM 257


>gi|357037201|ref|ZP_09099001.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
 gi|355361366|gb|EHG09121.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
          Length = 273

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 9/263 (3%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           + D L   V +    E +   +++A  A        +DF  P        A+  L D+  
Sbjct: 11  HLDKLQSMVTNPEDREILARAMDLAEVAGKSHRPQVTDFYDPYRCAMIARAMGYLPDLAV 70

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           V  GGYP AER R+ +        D D  ++ L++ G+F F   +H D+LG++LG G+ R
Sbjct: 71  VVDGGYPAAERSRVLIFPDYMFAGDVDTGLSFLAVKGSFRFNTVTHRDYLGALLGLGLRR 130

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           EK+GDI++ GE GAQ +V  E+ D++   L  VG V V+   I     E +PP  + ++ 
Sbjct: 131 EKLGDILV-GEDGAQLVVAAEVVDFIKMGLTGVGRVRVTVHEIN--RAEVKPP-ARDYRE 186

Query: 243 IEA---SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
           I+    SLR+DA+A+ GF LSR+K+   I+ G + +NW         +R GD++S  G+G
Sbjct: 187 IKVTVQSLRLDAVAAHGFGLSRTKMAGEIAAGKIYLNWRLCLDPSAPVRPGDMISARGRG 246

Query: 300 RIKIGEI-NSTRKGKFAVELIQY 321
           R+ + +    T+KG+  + L +Y
Sbjct: 247 RVAVEQTGGQTKKGRTNLLLHRY 269


>gi|406026563|ref|YP_006725395.1| 30S ribosomal protein S4e [Lactobacillus buchneri CD034]
 gi|405125052|gb|AFR99812.1| ribosomal protein S4e [Lactobacillus buchneri CD034]
          Length = 263

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 88  ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146
            R A+  R +L +DFL P  L      + +   V     GGYP AE  R +V  P+    
Sbjct: 26  GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83

Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
            +D   + A  I     F   SHG  LGSI+G+GI R+ IGDI+  G    QF+   E+A
Sbjct: 84  KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDG-LNWQFMCESEMA 142

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           DY+ + ++++G + +   +I    +       +   T  ASLRVDAL S GF +SR    
Sbjct: 143 DYVQSQVDRIGKIKIKLKQIQPEEIIVPVDEGEELTTTVASLRVDALVSEGFHISRHHAK 202

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
            LI  G +R+NW    +    +   DI+SV G GR+ + +I   T+KGK  + L  Y
Sbjct: 203 ELIEGGMIRINWEDANRPDLEISIQDIISVRGFGRLVVQDIAGMTKKGKIRIGLKVY 259


>gi|292669559|ref|ZP_06602985.1| S4 domain protein [Selenomonas noxia ATCC 43541]
 gi|292648768|gb|EFF66740.1| S4 domain protein [Selenomonas noxia ATCC 43541]
          Length = 264

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 132/252 (52%), Gaps = 7/252 (2%)

Query: 73  GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
           G++ AI     +L++A      R+   S FL P   + +         ++    GGY  A
Sbjct: 18  GEETAI----RLLDLAESVIKTRKFRISPFLDPYGQEIAETICANYEGIQLDFDGGYAGA 73

Query: 133 ERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           ER R  + H + A T D   +  ++   N  F   SH D LG+++G GI RE IGDI L 
Sbjct: 74  ERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESIGDI-LP 132

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
           G   A+ L   +++D+++ +L  +G   V  T      +     RTK  +   ASLR+DA
Sbjct: 133 GADAAKILCDAKISDFIVNNLTMIGAAGVKATVEDTAEIAPREERTKEIRATVASLRLDA 192

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 310
           +A+AGF +SRS+  + I+   V++NW +      T++ GD++S+ G+GR+++ E+   T+
Sbjct: 193 VAAAGFGVSRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRVEVTEVRGQTK 252

Query: 311 KGKFAVELIQYL 322
           KG+  V L ++ 
Sbjct: 253 KGRTVVVLKRFF 264


>gi|331701066|ref|YP_004398025.1| RNA-binding S4 domain-containing protein [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128409|gb|AEB72962.1| RNA-binding S4 domain protein [Lactobacillus buchneri NRRL B-30929]
          Length = 263

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 88  ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146
            R A+  R +L +DFL P  L      + +   V     GGYP AE  R +V  P+    
Sbjct: 26  GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83

Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
            +D   + A  I     F   SHG  LGSI+G+GI R+ IGDI+  G    QF+   E+A
Sbjct: 84  KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDG-LNWQFMCESEMA 142

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           DY+ + ++++G + +   +I    +       +   T  ASLRVDAL S GF +SR    
Sbjct: 143 DYVQSQVDRIGKIKIKLKQIQPEEIIAPVDEGEELTTTVASLRVDALVSEGFHISRHHAK 202

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
            LI  G +R+NW    +    +   DI+SV G GR+ + +I   T+KGK  + L  Y
Sbjct: 203 ELIEGGMIRINWEDANRPDLEISIQDIISVRGFGRLVVQDIAGMTKKGKIRIGLKVY 259


>gi|238855267|ref|ZP_04645586.1| cell division protein [Lactobacillus jensenii 269-3]
 gi|260664626|ref|ZP_05865478.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|313471915|ref|ZP_07812407.1| cell-division protein [Lactobacillus jensenii 1153]
 gi|238832159|gb|EEQ24477.1| cell division protein [Lactobacillus jensenii 269-3]
 gi|239529160|gb|EEQ68161.1| cell-division protein [Lactobacillus jensenii 1153]
 gi|260561691|gb|EEX27663.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
           SJ-7A-US]
          Length = 274

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQA 132
           KN  E++  +     +    +E + ++FL P     + + L +LA      Q  GGY +A
Sbjct: 21  KNDNEDISQLSGYLMQICYGKEAVLTNFLDPG----ARVDLRELAQSDFYIQEFGGYDKA 76

Query: 133 ERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           E+CR+ + +        +   +L  IT N  F   +H   LG++LG+G++   +GDII  
Sbjct: 77  EKCRVIISNDWEYKDVENFQFSLIKITYNHKFASITHSQILGTLLGSGLSPASLGDIITD 136

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
           G+   QF +   + D++   + ++G V+V   RIPL  +       ++ K +  SLR+DA
Sbjct: 137 GKGNWQFFISDIMLDFVCREITRIGKVAVRLDRIPLKQILNIEDDVQNVKLVVNSLRIDA 196

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           + +A  + SR+ + N I   ++++NW  +  +   +   D++SV   GRI+I  I +TRK
Sbjct: 197 ILAALTRTSRNIINNQIEKENIKLNWHKINNSNIIVTVNDVLSVRHFGRIEISNITTTRK 256

Query: 312 GKFAVE 317
           GK+ +E
Sbjct: 257 GKYRLE 262


>gi|227524052|ref|ZP_03954101.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
 gi|227088791|gb|EEI24103.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
          Length = 264

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           ++FL P  L      + +   +     GGY  AE  R ++ +PE  T   D   + A  I
Sbjct: 38  TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +HG  LGS++G GI R  +GDII  G K  QF+V  E+ADY+   ++ +G 
Sbjct: 97  DYPSKFATLAHGKILGSLMGVGIERNVVGDIITDGLKW-QFMVQSEMADYVKAQVDHIGK 155

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           + V    I    +      +++  T  +SLRVDAL S GF +SR     L+  GDVR+NW
Sbjct: 156 IKVMLEDISPEGVIAPVDESETLTTTVSSLRVDALISDGFHISRHHAKELVDTGDVRINW 215

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
              T+    L T DI+SV G GR+ I EI   T+K K  + +  Y
Sbjct: 216 VDTTRPDFELSTKDIISVRGYGRLVIKEITGMTKKDKIRIIISVY 260


>gi|430750503|ref|YP_007213411.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
 gi|430734468|gb|AGA58413.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
          Length = 260

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 12/249 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
           V   LE   RA+ R   + +DFL P         L+ +A    D      GGYP+AER R
Sbjct: 17  VDRALEWVERAAERHAPVVTDFLDP----RQQFILQSIAGREPDAVLRLDGGYPEAERKR 72

Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG-FQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
             +        D D  +  L++  + G F    HGD+LG++LG GI R+ IGD+ ++ + 
Sbjct: 73  AVIVPAYRDPEDVDCGIVVLAVEASGGKFLELDHGDYLGALLGLGIKRDVIGDLHVR-DD 131

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
           G   LV  E+A +L T L +V  V V    +P  +L    P         ASLR+D +AS
Sbjct: 132 GCHCLVTEEMAGFLHTHLNQVHRVPVRTDILPRESLRVVQPEMDVTVITVASLRLDGVAS 191

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 313
              ++SRSK+++ I  G  RVNW T       L  GDIVS  G GR KI +++  T+ G+
Sbjct: 192 DVLRISRSKILDPIRAGRCRVNWKTEEDPSARLEEGDIVSFKGFGRFKILKVDGPTKSGR 251

Query: 314 FAVELIQYL 322
             V + +++
Sbjct: 252 LRVSIGKFI 260


>gi|295109996|emb|CBL23949.1| Uncharacterized conserved protein, contains S4-like domain
           [Ruminococcus obeum A2-162]
          Length = 250

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 136/252 (53%), Gaps = 21/252 (8%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRL 137
           +K I E+A  +  R  V  SDFL    L E  +  E+   +  V     GGY QAER ++
Sbjct: 8   IKRIRELANLSYQRDIVTFSDFLN---LNEQNIVNEQKNQMPGVIIECSGGYEQAER-QM 63

Query: 138 SVGHPEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
              HP+AL    +  +  L I      F  +  +H DFLG++L  GI R  IGDI++Q E
Sbjct: 64  VAFHPDALLFPWEYPITCLKIEPLAAKFS-ESLTHRDFLGAVLNLGIERSVIGDILVQ-E 121

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
             A      ++ADY+I +L +V + ++  +++     E+ P  T  F+TI    AS+R+D
Sbjct: 122 HTAWIFCHNKIADYIIENLTRVRHTAMKISKVD--NPEHFP--TPHFETISGTCASVRLD 177

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINST 309
            L    F+ SRS +V+ I  G V VN   +T NG   + GDIVSV GKGR +  G +  T
Sbjct: 178 TLIGLAFQSSRSSMVSFIEGGQVFVNGKLITSNGYEPKDGDIVSVRGKGRFRYEGILGQT 237

Query: 310 RKGKFAVELIQY 321
           +KG+++++L +Y
Sbjct: 238 KKGRYSIKLSRY 249


>gi|302388662|ref|YP_003824483.1| RNA-binding S4 domain-containing protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302199290|gb|ADL06860.1| RNA-binding S4 domain protein [Thermosediminibacter oceani DSM
           16646]
          Length = 253

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 8/245 (3%)

Query: 80  EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139
           +++ I  +A +   +R     +FL P   + +              +GG+ +AER ++ V
Sbjct: 12  KIRDIFNIAIKNGEKR---AGNFLDPAEQQIAEAVARNFPGAGYYFEGGHSEAER-KVLV 67

Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
             PE L   P    + A+ +      +  SH D+LG++LG GI+R+K+GDII+  + GA 
Sbjct: 68  AFPEYLEDQPFFLPIRAIRVIPKDPDEHPSHRDYLGAVLGLGISRDKVGDIIVT-KTGAD 126

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V  E+A+Y+  +L +VGNV VS   I L  +       K  K   ASLR+DA+AS  F
Sbjct: 127 IIVKEEVAEYIGLNLSRVGNVPVSVEEISLKEVATVERSYKEIKGTVASLRLDAIASLAF 186

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
            +SRSK+   I   +VR+N+ TV      ++ GD++S +  GR K+ EI  S++KG+  V
Sbjct: 187 GISRSKMAPYIKGENVRLNFRTVKDPSAEVKEGDVISAARLGRAKVVEIGGSSKKGRIYV 246

Query: 317 ELIQY 321
            + +Y
Sbjct: 247 TVHRY 251


>gi|374324832|ref|YP_005077961.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
 gi|357203841|gb|AET61738.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
          Length = 260

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 127/251 (50%), Gaps = 12/251 (4%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD----VKAVAQGGYPQAER 134
           E V    E    A +  E   +DFL P      +  LE LA     V     GGY  +ER
Sbjct: 15  EYVDRASEWISHAGAYHEQKLTDFLDP----RQLYILETLASKEDKVTIRVDGGYEASER 70

Query: 135 CRLSVGHPEALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
            R  +    +     ++ +  LS+T +        HGD+LG+ILG GI R KIGDI +  
Sbjct: 71  KRALIAPDYSYVDGENMGIQVLSVTSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVL- 129

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           + G   LV  E++D++   L++V  V V    +P   L  +    +      ASLR+D +
Sbjct: 130 DDGCHVLVASEISDFITMHLQQVHRVHVWTELLPPENLRTKDVALEPLDLTVASLRLDGI 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
           AS  +KLSRSK++  I  G  RVNW       T+L+ GD++S+ G GR K+ E +  T+K
Sbjct: 190 ASDVYKLSRSKILTPIRAGRCRVNWKVEENPSTSLKAGDVISMQGFGRFKVLETDGMTKK 249

Query: 312 GKFAVELIQYL 322
           G+F V++ +++
Sbjct: 250 GRFRVKIGKFI 260


>gi|52080143|ref|YP_078934.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|319646078|ref|ZP_08000308.1| YlmH protein [Bacillus sp. BT1B_CT2]
 gi|404489031|ref|YP_006713137.1| RNA-binding protein YlmH [Bacillus licheniformis DSM 13 = ATCC
           14580]
 gi|52003354|gb|AAU23296.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|52348021|gb|AAU40655.1| putative RNA-binding protein YlmH [Bacillus licheniformis DSM 13 =
           ATCC 14580]
 gi|317391828|gb|EFV72625.1| YlmH protein [Bacillus sp. BT1B_CT2]
          Length = 258

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R  + +  +  +DFL P   V+ +S++   +  +V+    GG+P+AER R +
Sbjct: 16  IDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-A 72

Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           V  PE A  S  D  + A  +     F    H + LGS++G G+ R+K GD+I   +   
Sbjct: 73  VLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIF-SDGTW 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           QF+   E+AD++ T L ++G V VS  +IPL  L+      +      +SLR+DA+ SA 
Sbjct: 132 QFICSEEVADFVFTQLTQIGKVKVSLEKIPLSKLKVPEQDVEIRDDTVSSLRLDAICSAM 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
            + SR K   L+ NG V+VNW  +      L  GD+VS+ G GR ++  I+  T+KGK+
Sbjct: 192 SRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKNIDGKTKKGKW 250


>gi|423682084|ref|ZP_17656923.1| RNA-binding protein [Bacillus licheniformis WX-02]
 gi|383438858|gb|EID46633.1| RNA-binding protein [Bacillus licheniformis WX-02]
          Length = 258

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R  + +  +  +DFL P   V+ +S++   +  +V+    GG+P+AER R +
Sbjct: 16  INQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-A 72

Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           V  PE A  S  D  + A  +     F    H + LGS++G G+ R+K GD+I   +   
Sbjct: 73  VLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIF-SDGTW 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           QF+   E+AD++ T L ++G V VS  +IPL  L+      +      +SLR+DA+ SA 
Sbjct: 132 QFICSEEVADFVFTQLTQIGKVKVSLEKIPLSKLKVPEQDVEIRDDTVSSLRLDAICSAM 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
            + SR K   L+ NG V+VNW  +      L  GD+VS+ G GR ++  I+  T+KGK+
Sbjct: 192 SRQSRQKAQVLVKNGLVKVNWKVIEDPSYALAEGDMVSIRGFGRFRMKNIDGKTKKGKW 250


>gi|166031850|ref|ZP_02234679.1| hypothetical protein DORFOR_01551 [Dorea formicigenerans ATCC
           27755]
 gi|166028303|gb|EDR47060.1| S4 domain protein [Dorea formicigenerans ATCC 27755]
          Length = 251

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 130/245 (53%), Gaps = 7/245 (2%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ++E++  A SR  V  SDFL    L       +     +    GGY  AER ++    
Sbjct: 10  KRLIELSNLAFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFL 68

Query: 142 PEALTSDPDI-VAALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL  D    + AL I   N  F +  +H D+LG+I+  G +R KIGDII Q + GA  
Sbjct: 69  PDALYYDYGYPMQALKICPVNKRFAEDLTHRDYLGAIMNLGTSRTKIGDII-QADDGAIV 127

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E++DY++ +L ++ + +++  R  L  + YEP   +  K    S+R+D + S  + 
Sbjct: 128 FVKEEISDYIMKNLTRIRHTTITVERRELSDISYEP-HFEELKGTVPSVRLDTVLSVAYP 186

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVE 317
           LSRSKL   I    V VN   +T NG  L  GD++SV G GRI   G ++ T+KG++ + 
Sbjct: 187 LSRSKLTTYIEAAKVFVNGKLITNNGYHLNEGDLISVRGLGRIAYAGILSETKKGRYMIS 246

Query: 318 LIQYL 322
           L +Y+
Sbjct: 247 LRKYI 251


>gi|308069866|ref|YP_003871471.1| hypothetical protein PPE_03113 [Paenibacillus polymyxa E681]
 gi|305859145|gb|ADM70933.1| Uncharacterized conserved protein, contains S4-like domain
           [Paenibacillus polymyxa E681]
          Length = 260

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 128/242 (52%), Gaps = 8/242 (3%)

Query: 86  EMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           E    A +  E   +DFL P    + E++ + E    ++    GGY  +ER R  +    
Sbjct: 22  EWISHAGAYHEQKLTDFLDPRQQYILETLASKEDKVTIRV--DGGYMASERKRALIAPDY 79

Query: 144 ALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
           +     ++ +  LSIT +        HGD+LG++LG GI R KIGDI +  + G   LV 
Sbjct: 80  SYLDGEEMGIQVLSITSDDHKVGTLEHGDYLGALLGLGIKRGKIGDIHVL-DDGCHVLVA 138

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
            E+ D++   L++V  V V    +P+ +L  +    ++     ASLR+D +AS  +KLSR
Sbjct: 139 SEIGDFMTMHLQQVHRVHVWTELLPVASLRTKEVALEAIDLTVASLRLDGIASDVYKLSR 198

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQ 320
           SK++  I  G  RVNW       T L+ GD++S+ G GR K+ E +  T+KG+F V++ +
Sbjct: 199 SKILTPIRAGRCRVNWKVEENPSTLLKAGDVISMQGFGRFKVLETDGMTKKGRFRVKIGK 258

Query: 321 YL 322
           ++
Sbjct: 259 FV 260


>gi|357058626|ref|ZP_09119474.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
           43532]
 gi|355373582|gb|EHG20898.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
           43532]
          Length = 264

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 113/199 (56%), Gaps = 3/199 (1%)

Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGY  AER R  + H + A T D   +A +    N  F   +H D LG+++G GI RE 
Sbjct: 67  DGGYAGAERQRAMLCHRDFAGTPDGFAIACVEAAWNGQFARLTHRDVLGAVMGLGIEREL 126

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI L     A+ +   ++AD+++++L  +G V V      L A+     RTK  +   
Sbjct: 127 VGDI-LPASDTARIICDAKIADFIVSNLTMIGAVGVKTALSDLAAIPPREERTKEIRATV 185

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+D++ +AGF +SRS+  + I+   V++NW +      T++ GD++S+ G+GR+++ 
Sbjct: 186 ASLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAASASKTIKEGDVLSMRGRGRVEVT 245

Query: 305 EI-NSTRKGKFAVELIQYL 322
           E+   T+KG+  V L ++ 
Sbjct: 246 EVRGQTKKGRTVVVLNRFF 264


>gi|227512216|ref|ZP_03942265.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
 gi|227084610|gb|EEI19922.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
          Length = 264

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           ++FL P  L      + +   +     GGY  AE  R ++ +PE  T   D   + A  I
Sbjct: 38  TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +HG  LGS++G GI R  +GDII  G K  QF+V  E+ADY+   ++ +G 
Sbjct: 97  DYPSKFATLAHGKILGSLMGVGIERNVVGDIITDGLKW-QFMVQSEMADYVKAQVDHIGK 155

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           + V    I    +      +++     +SLRVDAL S GF +SR     L+  GDVR+NW
Sbjct: 156 IKVKLEDISPEGVIAPVDESETLTITVSSLRVDALISDGFHISRHHAKELVDTGDVRINW 215

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
              T+    L T DI+SV G GR+ I EI   T+K K  + +  Y
Sbjct: 216 VDTTRPDFELSTKDIISVRGYGRLVIKEITGMTKKDKIRIIISVY 260


>gi|222529338|ref|YP_002573220.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456185|gb|ACM60447.1| RNA-binding S4 domain protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 260

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 6/228 (2%)

Query: 99  HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
           +SDFL+P  +K ++  L K  + +   + GGY  +ER  L++ + +      ++   + I
Sbjct: 33  YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEGSERNILALFNRDFEEYTENLTYPIQI 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                    SH   LGS +G G+ R+KIGDI+++ E GA   V  E+A Y++T+++K+GN
Sbjct: 93  ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENGALVFVKDEIATYVVTNIDKMGN 151

Query: 218 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
             V C+ +    ++   +    +K      ASLRVD++ S GF +SR +  +LI    V 
Sbjct: 152 EKVKCSIVGNGQIDIKWFINNNSKRVVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           VNW  + K    ++ GD+VSV   GR+KI ++ ++T+KG+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLVSVRHHGRLKIEKVLSTTKKGRISIEVLRF 259


>gi|226313407|ref|YP_002773301.1| hypothetical protein BBR47_38200 [Brevibacillus brevis NBRC 100599]
 gi|226096355|dbj|BAH44797.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 257

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 124/238 (52%), Gaps = 9/238 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V+  LEM  +   ++ +  +DF+ P  L        ++ DVK    GGY  AER R+ + 
Sbjct: 15  VERALEMLTQVERKQAMRLTDFVDPRQLLIFQSLSSQVTDVKVSPYGGYEGAERVRIII- 73

Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           HPE L  +PD   +  L+I  +  F    H D +G++LG G+ REK GD+ L    G+  
Sbjct: 74  HPEYLPVEPDDYRLTLLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGDM-LTDSAGSYA 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEA-SLRVDALASAG 256
           +V  E+AD++   + ++   SV   R+   A  + PP  K   KTI   S R+DA+    
Sbjct: 133 IVAEEVADFVCAQVTQIHRTSVQFERVAWEA--FTPPAPKFVEKTITVPSGRIDAIIGEV 190

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
             +SR+K +  I  G V++NW  +      L+ GD+VS++G GR KI E+   TR G+
Sbjct: 191 HNMSRAKALVPIRAGKVKINWKVIEDPSYQLQMGDMVSLAGYGRFKILEVAGPTRSGR 248


>gi|304437219|ref|ZP_07397179.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369711|gb|EFM23376.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 264

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 3/246 (1%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E    +L++A      R+   S FL P   + +        D++    GGY  AER R  
Sbjct: 20  ETAVRLLDLAETVVKTRKFRISPFLDPYGQEIAETIRASYDDLQLDFDGGYQGAERARAM 79

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           + H +      D  +  +  T N  F   +H D LG+++G GI RE IGDI L     A+
Sbjct: 80  LRHRDFAGRTEDFGIVCVEATWNGQFARLTHRDVLGAVMGLGIEREMIGDI-LPASDAAK 138

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            L   ++A +LI +L  +G V V      L  +     RTK  +   ASLR+D++ +AGF
Sbjct: 139 ILCDAKIAPFLIENLTMIGAVGVKTVPAELTEIAPREERTKEIRATVASLRLDSIVAAGF 198

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
            +SRS+  + I+   V+ NW +      T++ GD++S+ G+GR+++ E+   T+KG+  V
Sbjct: 199 GISRSRAADDITADKVKHNWQSAASASKTVKEGDVLSMRGRGRVEVTEVRGQTKKGRTVV 258

Query: 317 ELIQYL 322
            L ++ 
Sbjct: 259 VLHRFF 264


>gi|78779838|ref|YP_397950.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
 gi|78713337|gb|ABB50514.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
          Length = 263

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 138/262 (52%), Gaps = 10/262 (3%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DL + + + N  EE + ++ +A  A    E   + F +  V +E     E L D K    
Sbjct: 3   DLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVY 62

Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           GG+  ++R R+      ++   +AL S+ P     + I GNF F   +  DF   ++  G
Sbjct: 63  GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENG 120

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           + + K+GDI   G++GAQ ++     ++L   +  + +V V    + +  L+    RTK 
Sbjct: 121 VHKVKVGDIWTIGDRGAQGIIDNLDIEHLNEKIFYLRDVKVKINLVGIDELQIPSGRTKK 180

Query: 240 F-KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T+EAS R+DA+ASAGF++SR+K++  I NG +++N + V K    L+ GD + +  K
Sbjct: 181 LVNTVEASTRLDAIASAGFRISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENK 240

Query: 299 GRIKIGEINSTRKGKFAVELIQ 320
           G I+I  +  T++ ++ V+L++
Sbjct: 241 GFIEILNLEITKRERWKVKLLR 262


>gi|365839024|ref|ZP_09380275.1| S4 domain protein [Anaeroglobus geminatus F0357]
 gi|364565826|gb|EHM43537.1| S4 domain protein [Anaeroglobus geminatus F0357]
          Length = 261

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 2/241 (0%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
            ++++A      R    S+F++P  ++         A +     GGY  AER +L     
Sbjct: 22  RLIDLADSTDKGRPYAVSEFVSPGAVQIGETVSAHAATLVLRVNGGYEGAERVKLCFIRN 81

Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
           +   S    + A  IT +  ++   H D LG+++  GI R + GDII+  E GA  LV  
Sbjct: 82  DYEGSVDFGLTACRITWDARYRLLGHRDVLGALMSLGIDRGRFGDIIMH-EDGAVILVDT 140

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
           +L  YL  +L K+  VSV+ + +P+ ++     + K  KT  ASLR+DA+ S+GF +SR+
Sbjct: 141 KLLPYLQQNLGKIAMVSVTISEVPVASIPPRREKIKEIKTTVASLRLDAVVSSGFGISRT 200

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQY 321
           K    I    V+VNW         + TG ++S+ GKGR+++ E+  T RKG+  V L +Y
Sbjct: 201 KAAEAIKGERVQVNWQPAKGASQEVGTGAVISLRGKGRMELAEVTGTSRKGRTGVLLRRY 260

Query: 322 L 322
           +
Sbjct: 261 M 261


>gi|373115649|ref|ZP_09529818.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
           7_1_58FAA]
 gi|371670171|gb|EHO35257.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
           7_1_58FAA]
          Length = 266

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 12/245 (4%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHP 142
           LE+AR+   R     +DFL+P         L      + +  GGY  AER  C       
Sbjct: 27  LELARQ---RNIPACTDFLSPQERVSVENLLNACGHPRHLFFGGYEGAERTVCAFLPDWQ 83

Query: 143 EALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           EA     D     V AL  T + G Q  +H DFLGS+LG G+ REK+GD+++   +    
Sbjct: 84  EAEDWQGDGESCPVRALRCTWSGG-QKLTHRDFLGSVLGLGLDREKVGDLLVADGR-CDV 141

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           L + E+AD+L+  +E+ G V + C+ +PL  LE     T++ +   +SLR+DA+A++GF 
Sbjct: 142 LALEEVADFLVFHMEQAGRVKLKCSPLPLDRLEPPAVETRTIRDTVSSLRLDAVAASGFS 201

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           LSR K  +LI++G V++N     K    +  GD++S  G G+  + E+   ++KG+  + 
Sbjct: 202 LSRGKAADLIASGRVQLNHRECVKPDHAVAQGDVLSCRGLGKCVLTEVGGPSKKGRILIV 261

Query: 318 LIQYL 322
           L +Y+
Sbjct: 262 LERYV 266


>gi|374709389|ref|ZP_09713823.1| RNA-binding S4 domain-containing protein [Sporolactobacillus
           inulinus CASD]
          Length = 257

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + H L++  + S R     +DF+ P         + K   V     GGY  AER R  + 
Sbjct: 15  IDHFLDLIDQVSQRYIPRLTDFMDPRQQTILRSLIGKNDAVHLSIFGGYEHAERARALLL 74

Query: 141 HPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
            P     SDP  +A L +     F   +H + LG++LG+GI+R KIGD+++ GE+ AQF+
Sbjct: 75  PPYFEPDSDPFDLAYLDVRYPAKFGSVTHPELLGALLGSGISRNKIGDLLI-GEEAAQFI 133

Query: 200 VVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V EL  Y +  L  VG +SVSC  I P   L      T S  T+ +SLR+D L S  + 
Sbjct: 134 CVKELEPYFMLHLTSVGKLSVSCRPILPKNLLHTADGWTYSEGTV-SSLRLDTLLSEIYH 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           L R K    I+ G  +VNW  V K    +R GD++S+ G GR KI
Sbjct: 193 LPRVKASEAIARGLAKVNWEIVEKRNFDIREGDVISLRGHGRSKI 237


>gi|256850936|ref|ZP_05556325.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260661150|ref|ZP_05862064.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
           115-3-CHN]
 gi|297205816|ref|ZP_06923211.1| cell-division protein [Lactobacillus jensenii JV-V16]
 gi|256615998|gb|EEU21186.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260548087|gb|EEX24063.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
           115-3-CHN]
 gi|297148942|gb|EFH29240.1| cell-division protein [Lactobacillus jensenii JV-V16]
          Length = 274

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 95  REVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDPDI- 151
           +E + ++FL P     +   L++LA      Q  GGY +AE+CR  + +        +  
Sbjct: 41  KEEILTNFLDPG----ARANLKELAQDDFYVQEFGGYDRAEKCRAIIRNDWEYQDVRNFQ 96

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +  ++IT N  F   +H   LG+++G+G+    +GDII  G+   QF V   +AD++   
Sbjct: 97  LKLINITYNHKFATITHSQILGTLVGSGLNLSSLGDIITDGKGKWQFFVSEAMADFVCQE 156

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++++G V+VS   + L  +       ++ K I  SLR+DA+ +A  K SR+ +  LI   
Sbjct: 157 IKRIGKVAVSLNEVSLKQIVNIEDDIQNTKIIVNSLRIDAILAALTKSSRNIVKQLIEKE 216

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           ++++NW  +  +   +   D++SV   GRI+I  I +TRKGK+ +E
Sbjct: 217 NIKLNWHKIDNSNIIISVNDVLSVRHYGRIEISNITNTRKGKYRLE 262


>gi|153853144|ref|ZP_01994553.1| hypothetical protein DORLON_00538 [Dorea longicatena DSM 13814]
 gi|149753930|gb|EDM63861.1| S4 domain protein [Dorea longicatena DSM 13814]
          Length = 251

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 138/246 (56%), Gaps = 9/246 (3%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ++E++R A +R  V+ SDFL    L       + +   +    GGY  +ER +++V  
Sbjct: 10  KRLVELSRLAYNRGIVIFSDFLNLNELNILHTTPKDMFLSQYKTYGGYDLSER-QMAVFL 68

Query: 142 PEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           P+AL  D +    I+     +  F  +  +H D+LG+++  GI R K+GDII++ +KG  
Sbjct: 69  PDALYYDYEYPIQIIEVTPSSKRFA-EDLTHRDYLGALMNLGIERSKVGDIIVEDQKGLI 127

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           F V  ELA+Y+  +L  V + +V+ +    + ++YEP R +  K   +S+R+D++ +  +
Sbjct: 128 F-VKEELAEYIADNLTVVRHTNVNTSIGKGVKVDYEP-RFEELKGTVSSIRLDSVLALAY 185

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAV 316
            LSRSK+   I  G V VN   +T NG  L+  DI+SV   GRI   G ++ T+KG++ +
Sbjct: 186 PLSRSKITAQIEAGKVFVNGKLITSNGYRLKDNDIISVRKMGRIAYDGILSETKKGRYLI 245

Query: 317 ELIQYL 322
            + +Y+
Sbjct: 246 SVRKYI 251


>gi|365851170|ref|ZP_09391611.1| S4 domain protein [Lactobacillus parafarraginis F0439]
 gi|363717369|gb|EHM00747.1| S4 domain protein [Lactobacillus parafarraginis F0439]
          Length = 249

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 108/215 (50%), Gaps = 5/215 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
           FL P  L      + +   ++    GGY  AE  R ++ +PE  T   +     S   ++
Sbjct: 25  FLNPRQLFILESIINRHDGIRFSTFGGYEGAELKR-AIVYPEYFTPKNEDFHITSFVIDY 83

Query: 162 --GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   SHG  LGSI+G GI R+ IGDII  G    QFL   E+ADY+   ++KVG + 
Sbjct: 84  PSKFATLSHGQVLGSIMGAGIERDVIGDIITDG-LSWQFLCQSEMADYIKAQVDKVGKIK 142

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V    I    L      ++   T  +SLRVDAL S GF +SR     LI  G+VR+NW  
Sbjct: 143 VKLEVIESDQLVTPVDESEEVSTTISSLRVDALVSEGFHISRHHAKELIDGGEVRINWGE 202

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 313
             +    +   DIVSV G GRI I EI+  T+KGK
Sbjct: 203 TQRPDLEVSMHDIVSVRGYGRIVIREIDGITKKGK 237


>gi|312622416|ref|YP_004024029.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202883|gb|ADQ46210.1| RNA-binding S4 domain protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 255

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 6/228 (2%)

Query: 99  HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
           +SDFL+P  +K ++  L K  + +   + GGY  +ER  L++ + +      ++   +  
Sbjct: 28  YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEDSERNILALFNRDFEEYTENLTYPIQT 87

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                    SH   LGS +G G+ R+KIGDI+++ E GA   V  E+A Y++T+++K+GN
Sbjct: 88  ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENGALVFVKDEIATYVVTNIDKIGN 146

Query: 218 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
             V C+ +    ++   +    +K      ASLRVD++ S GF +SR +  +LI    V 
Sbjct: 147 EKVKCSIVENGQIDIKWFINNNSKRVVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 206

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           VNW  + K    ++ GD+VSV   GR+KI ++ ++T+KG+ ++E+ ++
Sbjct: 207 VNWVYIDKPSYAVKEGDLVSVRHHGRLKIEKVLSTTKKGRISIEVSRF 254


>gi|433545426|ref|ZP_20501780.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
 gi|432183249|gb|ELK40796.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
          Length = 257

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 14/252 (5%)

Query: 72  VGDKNAIEE---VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
           V D  A EE   V+  LEM   A  ++ +  +DF+ P           ++ DVK  A GG
Sbjct: 3   VFDHFAKEERPFVERALEMLTLAERKQAMRLTDFVDPRQWHIMKSLTSQVRDVKISASGG 62

Query: 129 YPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           Y  AER R+ + HPE +  +P+   +A L+I  +  F    H D +G++L  G+ REK G
Sbjct: 63  YEGAERVRVLI-HPEYIEVEPEDFRLALLAIKADQRFHTLEHRDVMGALLHAGMKREKFG 121

Query: 187 DIILQGEKGAQF-LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK-SFKTIE 244
           D++   + G  + +V  E+AD++ T + ++   SV   R+   +  + PP T+ + KTI 
Sbjct: 122 DMLT--DVGTCYAIVAEEVADFVCTQVTQIHRTSVQFERVAWES--FTPPATRFAEKTIT 177

Query: 245 A-SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
             S R+DA+      +SR+K +  I  G V+VNW       T L+ GD+VS++G GR KI
Sbjct: 178 VPSPRIDAVIGEVHNMSRAKALVPIRAGKVKVNWKVTEDPSTQLQQGDMVSLAGYGRFKI 237

Query: 304 GEI-NSTRKGKF 314
            EI   TR G+ 
Sbjct: 238 LEIAGPTRSGRL 249


>gi|33861912|ref|NP_893473.1| hypothetical protein PMM1356 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640280|emb|CAE19815.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 263

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 137/260 (52%), Gaps = 6/260 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DL + + + N  +E++ ++ ++  +    +   + F +  V +E +   E L D K    
Sbjct: 3   DLKELLINSNYKKEIEELINISNLSLKHWQTYWTGFNSTFVCEEILKEFENLNDFKFFVF 62

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA-----ALSITGNFGFQPCSHGDFLGSILGTGIA 181
           GGY  A+R +++    +      +++         + GNF F   +  DF   ++  G+ 
Sbjct: 63  GGYNSAQRSKIACFREDNTPEKNELIKDFPAKGFQMNGNFLFDNATQDDFRSLLVDNGLR 122

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF- 240
            E+IGDI   G++GAQ ++     ++L   +  + +V V    + L  L+    R+K   
Sbjct: 123 EERIGDIWTIGDRGAQGIIDDSKIEFLDEKIFSLRDVKVKIKIVSLDELQIPAGRSKKII 182

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
            T+EAS R+DA+ASAGF++SR+K++  I  G +++N  TV K   +L+ GD + +  KG 
Sbjct: 183 NTVEASTRIDAIASAGFRISRNKILERIETGMLKLNGKTVKKGTISLKVGDKLQLDNKGF 242

Query: 301 IKIGEINSTRKGKFAVELIQ 320
           I+I ++  T++ ++ ++L++
Sbjct: 243 IEILDLEITKRERWKIKLLR 262


>gi|338813355|ref|ZP_08625484.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
 gi|337274714|gb|EGO63222.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
          Length = 263

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 139/250 (55%), Gaps = 10/250 (4%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E    +L++A  A   ++   SDFL P  +  +   +     ++  + GGYP AER + +
Sbjct: 18  ELAAKLLDIAEAALRYQKYKISDFLDPFGISVAETIIAHYGRLRLASDGGYPGAERVKAA 77

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
               + + +    ++ L++  +  +   SH D LG++ G G+ RE IGDII  G++  Q+
Sbjct: 78  FVTNDYMGTIDFGISVLAVQYDSRYYSLSHRDVLGALTGAGLKREVIGDII-PGDRQYQY 136

Query: 199 --LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALA 253
             L+  +L ++++ +L ++G   V   ++ LL L    PR ++ K I A   SLR+D++A
Sbjct: 137 QILIDAKLVEFVLRNLTQIGPAPV---QLSLLDLTEIVPREETLKEIRATVASLRLDSVA 193

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKG 312
           +AGF  SR+K+   I    VRVNW     +   ++ GD++++ G+GR+++ EI   T+KG
Sbjct: 194 AAGFGTSRTKMAAEIMAEKVRVNWQDARNSSQIIKPGDVIAMRGRGRVEVCEIGGQTKKG 253

Query: 313 KFAVELIQYL 322
           + ++ L +YL
Sbjct: 254 RTSLLLKRYL 263


>gi|299144086|ref|ZP_07037166.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518571|gb|EFI42310.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 257

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 10/247 (4%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           D++ + E++ +++    +++R  +  +DFL P   K  +  L K  D+     GGY  +E
Sbjct: 15  DEDKLFEIRKVIDKIEISANRHSIQSTDFLDPYERKIVISILNKFDDISYSIDGGYSNSE 74

Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           R  + +        D D V  LS   NF F   +H D LGSIL  GI R K+GDI+    
Sbjct: 75  RAVIYIFPNYMYDIDFDDVEVLSFKNNFEF---THKDVLGSILSLGIDRRKVGDIVFNSN 131

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDAL 252
                 V  E+  YL  +L KV   ++   +   +    EP  T   +  I +SLR+D  
Sbjct: 132 -YCHIFVKSEIFKYLRFNLGKVKRNNIKFEKAEFI----EPTLTYDEYTFIISSLRLDTF 186

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRK 311
            S+  KLSR+   NLI +  V+VN+   +K    +  GD++SV G GRI    I   TRK
Sbjct: 187 LSSVLKLSRTAASNLIESDKVKVNFRKESKGSNKVNIGDLISVRGFGRIFFDNIEGYTRK 246

Query: 312 GKFAVEL 318
            ++ V++
Sbjct: 247 DRYIVKV 253


>gi|397905182|ref|ZP_10506053.1| FIG001583: hypothetical protein, contains S4-like RNA binding
           domain [Caloramator australicus RC3]
 gi|397161831|emb|CCJ33387.1| FIG001583: hypothetical protein, contains S4-like RNA binding
           domain [Caloramator australicus RC3]
          Length = 251

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 11/227 (4%)

Query: 92  SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA--ERCRLSVGHPEALTSDP 149
           S + + + +DFL P    E   AL++L   + V    + +   ER    +G  + +    
Sbjct: 26  SKKWQTVFTDFLNP----EEQAALKELCSDEGVEVCFFDEGKLERTIAKLGLNDDIEYPI 81

Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
           D+   L I GNF F+   H D+LG+IL  GI REKIGDI +  E GA+  V+ EL+DY++
Sbjct: 82  DV---LKIEGNFKFEQLEHRDYLGAILSLGIKREKIGDINVY-EDGAEVYVLKELSDYIL 137

Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 269
            +L ++ + SV   +I L     +  + K F    ASLR+DA+ +    +SR+K   LI 
Sbjct: 138 LNLTQIKHTSVKIKKISLQEAREKQVKFKEFNINIASLRLDAIVAELIGVSRNKASELIR 197

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFA 315
           N  V++N+  + +    +    ++S+ G GR ++GE + +TR G+F 
Sbjct: 198 NEKVKLNFKLIKEVDKKVDPNSVLSIKGYGRFQLGECLGTTRNGRFV 244


>gi|307244150|ref|ZP_07526268.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492521|gb|EFM64556.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 261

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 134/244 (54%), Gaps = 9/244 (3%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           ++++    S+   + +++FL P  ++ ++  +    D++   +GGY  AER  + +    
Sbjct: 22  LVDICNSVSNSYSLRNTEFLNPYEIRNAISIINYDKDLEYTIEGGYEDAERAVIFIYPDY 81

Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 202
            +  + D+ +  L I GNF F   SH D+LGS++  GI REKIGDI++  +   Q +V  
Sbjct: 82  YILEEGDLTLTYLEIRGNFKFTTVSHRDYLGSLMSLGIKREKIGDILVHDD-YCQMVVDS 140

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF--KTIE-ASLRVDALASAGFKL 259
           ++AD++I +  ++ N  VS T I    L  +PP  KS+  K    +SLR+D++ +  F L
Sbjct: 141 DIADFIIYNYNRIKNNKVSVTEIDKSDL--KPP-IKSYDDKVFSISSLRLDSVIAGAFNL 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           SR +   LI+   V+VN+  V     ++  G I+SV  KG+    ++   ++K KF V++
Sbjct: 198 SRQEASKLINADLVQVNYEPVNNVSKSIEEGSIISVRKKGKFIFDKVLGMSKKDKFRVKI 257

Query: 319 IQYL 322
            +++
Sbjct: 258 NKFV 261


>gi|398813824|ref|ZP_10572515.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
 gi|398037877|gb|EJL31054.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
          Length = 257

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 125/243 (51%), Gaps = 17/243 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
           V+  LEM  +    + +  +DF+ P      +M  E L+    DVK    GGY  AER R
Sbjct: 15  VERALEMLTQVERTQAMRLTDFVDP----RQLMIFESLSSQVRDVKVSPYGGYEGAERVR 70

Query: 137 LSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
           + + HPE L  +P+   +  L+I  +  F    H D +G++LG G+ REK GD+ L    
Sbjct: 71  III-HPEYLPVEPEDYRLTLLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGDM-LTDSA 128

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEA-SLRVDAL 252
           G+  +V  E+AD++   + ++   SV   R+   A  + PP  K   KTI   S R+DA+
Sbjct: 129 GSYTIVAEEVADFVCAQVTQIHRTSVQFERVAWEA--FTPPAPKFVEKTITVPSPRIDAI 186

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
                 +SR+K +  I  G V++NW  +      L+ GD+VS++G GR KI E+   TR 
Sbjct: 187 IGEVHNMSRAKALVPIRAGKVKINWKVIEDPSYQLQMGDMVSLAGYGRFKILEVAGPTRS 246

Query: 312 GKF 314
           G+ 
Sbjct: 247 GRL 249


>gi|365843208|ref|ZP_09384157.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
 gi|364573034|gb|EHM50556.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
          Length = 266

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 137/265 (51%), Gaps = 12/265 (4%)

Query: 65  FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV 124
            + L +  G++  +      LE+AR+   R     + FL+P         L      + +
Sbjct: 7   LNKLARDNGERLLLARALDKLELARQ---RNIPTCTGFLSPQERASVENLLNACGHPRHI 63

Query: 125 AQGGYPQAER--CRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGT 178
             GGY  AER  C       EA     D     V AL  T + G Q  +H DFLGSILG 
Sbjct: 64  FFGGYEGAERTVCAFLPDWQEAEDWQGDGESCPVRALRCTWSGG-QKLTHRDFLGSILGL 122

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           G+ REK+GD+++   +    L + E+AD+L+  +E+ G V + C+ +PL  LE     T+
Sbjct: 123 GLDREKVGDLLVTDGR-CDVLALEEVADFLVFHMEQAGRVKLKCSPLPLDRLEPPAVETR 181

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
           + +   +SLR+DA+A++GF LSR K  +LI++G V++N     K    +  GD++S  G 
Sbjct: 182 TIRDTVSSLRLDAVAASGFSLSRGKAADLIASGRVQLNHRECVKPDHAVAQGDVLSCRGL 241

Query: 299 GRIKIGEINS-TRKGKFAVELIQYL 322
           G+  + E+   ++KG+  + L +Y+
Sbjct: 242 GKCVLTEVGGPSKKGRILIVLERYV 266


>gi|423073771|ref|ZP_17062508.1| S4 domain protein [Desulfitobacterium hafniense DP7]
 gi|361855393|gb|EHL07369.1| S4 domain protein [Desulfitobacterium hafniense DP7]
          Length = 265

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 12/258 (4%)

Query: 69  LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
           LK   +K    E  H+L++   A  +R+ + + FL   +    E ++  E LA      +
Sbjct: 10  LKFWTEKEMRLEGAHLLDLCNEALRKRKPVWTPFLGQALANWLEGILQREGLA---FRLE 66

Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GG+  AER R L V  P+ L + P  + AL  T         H   LGS++G G+ RE I
Sbjct: 67  GGFSDAERVRFLVVADPDVLDNVPSEIRALQATPTDPRGKLDHRQVLGSLMGLGLKREVI 126

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTI 243
           GDI L  E+     V  E+AD+L++  +K G   +   R+  +  + E P  + K  +  
Sbjct: 127 GDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEQDVEIPLEQGKERRIT 182

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            AS R+DA+AS+GF +SR+    LI  G V+ N   V K    ++ GDI+S  G GR+++
Sbjct: 183 AASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKADLEVKPGDILSCRGYGRMRL 242

Query: 304 GEINSTRKGKFAVELIQY 321
            E   TRKG+ A  +I Y
Sbjct: 243 LEFQETRKGRIAWNVILY 260


>gi|126696880|ref|YP_001091766.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
           9301]
 gi|126543923|gb|ABO18165.1| Uncharacterized conserved protein, contains S4-like
           domain-containing protein [Prochlorococcus marinus str.
           MIT 9301]
          Length = 263

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 139/262 (53%), Gaps = 10/262 (3%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DL + + + N  +E + ++ +A  A    E   + F +  V +E +   E L D K    
Sbjct: 3   DLKEILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIY 62

Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           GG+  ++R R+      ++   +AL S+ P     + I GNF F   +  DF   ++  G
Sbjct: 63  GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIKNG 120

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           + + K+GDI   G++GAQ ++     ++L   +  + +V V    + +  L+    R+K 
Sbjct: 121 VNQLKVGDIWTIGDRGAQGIIDNLDIEHLDEKIFYLRDVKVKINVVGIDELQIPSGRSKK 180

Query: 240 F-KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T+EAS R+DA+ASAGF++SR+K++  I NG +R+N + V K    L+ GD + +  K
Sbjct: 181 LVNTVEASTRLDAIASAGFRVSRTKIIERIENGMLRLNGSKVNKPTINLKIGDKLELENK 240

Query: 299 GRIKIGEINSTRKGKFAVELIQ 320
           G I+I  +  T++ ++ V+L++
Sbjct: 241 GFIEILNLEITKRERWKVKLLR 262


>gi|123969089|ref|YP_001009947.1| S4-like domain-containing protein [Prochlorococcus marinus str.
           AS9601]
 gi|123199199|gb|ABM70840.1| Uncharacterized conserved protein, contains S4-like
           domain-containing protein [Prochlorococcus marinus str.
           AS9601]
          Length = 263

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 10/262 (3%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DL + + + N  +E + ++ +A  A    E   + F +  V +E +   E L D K    
Sbjct: 3   DLKEILINANYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIY 62

Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           GG+  ++R R+      ++   +AL S+ P     + I GNF F   +  DF   ++  G
Sbjct: 63  GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENG 120

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           + + K+GDI   G++GAQ ++      +L   +  + +V V    + +  L+    R+K 
Sbjct: 121 VNQIKVGDIWTIGDRGAQGIIDNSNIKHLDEKIFYLRDVKVKVNVVGIDELQIPSGRSKK 180

Query: 240 F-KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T+EAS R+DA+ASAGF++SR+K++  I NG +R+N + V K    L+ GD + +  K
Sbjct: 181 LVNTVEASTRLDAIASAGFRVSRTKIIERIENGMLRLNGSKVNKPTINLKIGDKLELENK 240

Query: 299 GRIKIGEINSTRKGKFAVELIQ 320
           G I+I  +  T++ ++ V+L++
Sbjct: 241 GFIEILNLEITKRERWKVKLLR 262


>gi|427405920|ref|ZP_18896125.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
 gi|425708761|gb|EKU71800.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
          Length = 264

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 7/254 (2%)

Query: 71  GVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYP 130
           G G++ A+     +L++A      R+   S FL P   + +         ++    GGY 
Sbjct: 16  GEGEETAV----RLLDLAESVMKTRKFRISPFLDPYGQEIAETVRASFDGLRLDFDGGYA 71

Query: 131 QAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
            AER R  + H + A T     +A ++   N  F   SH D LG+++G GIAR+ +GDI+
Sbjct: 72  GAERQRAMLRHEDFAGTPGGYEIACVAAAWNGQFARLSHRDVLGAVMGLGIARDGVGDIL 131

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
           +  +  A+ L   ++AD++   L  +G V V+ +   L  +     R K  +   ASLR+
Sbjct: 132 V-AQDTAKILCDAKIADFIAERLTMIGAVHVTASLGDLAEIAPREERIKEIRATVASLRL 190

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS- 308
           D++A+AGF +SRS+  + I+   V++NW +       +  GD++S+ G+GR+++ E+   
Sbjct: 191 DSVAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNVNEGDVLSMRGRGRVEVTEVRGR 250

Query: 309 TRKGKFAVELIQYL 322
           T+KG+  + L +Y 
Sbjct: 251 TKKGRIVIVLHRYF 264


>gi|320530724|ref|ZP_08031768.1| S4 domain protein [Selenomonas artemidis F0399]
 gi|320137011|gb|EFW28949.1| S4 domain protein [Selenomonas artemidis F0399]
          Length = 264

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 113/198 (57%), Gaps = 3/198 (1%)

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGY  AER R  + H + A T     +  ++   N  F   +H D LG+++G GI R  +
Sbjct: 68  GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI+L G+  A+ L   ++A +++  L  +G V V+ T   L  +     RTK  +   A
Sbjct: 128 GDILLAGDT-AKILCDTKMAQFIMEELTMIGAVRVTTTLGDLADIAPREERTKEIRATVA 186

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+A+AGF +SRS+  + I+   V++NW +       ++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDAIAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNIKQGDVLSMRGRGRLEVTE 246

Query: 306 I-NSTRKGKFAVELIQYL 322
           +   T+KG+ +V L +Y 
Sbjct: 247 VRGQTKKGRISVVLHRYF 264


>gi|291533844|emb|CBL06957.1| lipoprotein signal peptidase [Megamonas hypermegale ART12/1]
          Length = 418

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 123/235 (52%), Gaps = 1/235 (0%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E V  +++     +  R+   +DFL P   + +   +     +     GGY  AER   +
Sbjct: 18  EIVIKLIDAVEAVNKTRKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCAN 77

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             H + +      ++ +  T N  F   SH D LG+++G GI RE+IGD+++      + 
Sbjct: 78  FVHEDFMGKPSYNISVVKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLIT-LGMVKI 136

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +   ++AD+++ +L ++ +  VSC    L  +     R K   +  ASLR+D++A++GF 
Sbjct: 137 ICTTKMADFILQNLTQISSAKVSCELDNLGTIAPREERCKEITSTVASLRIDSIAASGFG 196

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 313
            SRSK+ ++I    +++NW TV      ++ GDI+S+ G+GR+++ E+  T K +
Sbjct: 197 ASRSKMSSMIDAEKLKLNWQTVKSASQMVKQGDIISIRGRGRLEVAEVRGTTKKR 251


>gi|346306279|ref|ZP_08848437.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
           4_6_53AFAA]
 gi|345900084|gb|EGX69912.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
           4_6_53AFAA]
          Length = 251

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ++E++  A SR  V  SDFL    L       +     +    GGY  AER ++    
Sbjct: 10  KRLIELSNLAFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFL 68

Query: 142 PEALTSDPDI-VAALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL  D    + AL I   N  F +  +H D+LG+I+  G +R KIGDII Q + GA  
Sbjct: 69  PDALYYDYGYPMQALKICPVNKRFAEDLTHRDYLGAIMNLGTSRTKIGDII-QTDDGAIV 127

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E++DY++ +L ++ + +++  R  L  + YE    +  K    S+R+D + S  + 
Sbjct: 128 FVKEEISDYIMKNLTRIRHTTITVERRELSDISYES-HFEELKGTVPSVRLDTVLSVAYP 186

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVE 317
           LSRSKL   I    V VN   +T NG  L  GD++SV G GRI   G ++ T+KG++ + 
Sbjct: 187 LSRSKLTTYIEAAKVFVNGKLITNNGYHLNEGDLISVRGLGRIAYAGILSETKKGRYMIS 246

Query: 318 LIQYL 322
           L +Y+
Sbjct: 247 LRKYI 251


>gi|238927880|ref|ZP_04659640.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
 gi|238884213|gb|EEQ47851.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
          Length = 264

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
           D++    GGY  AER R  + H +      D  +A +    N  F   +H D LG+++G 
Sbjct: 61  DLQLDFDGGYQGAERARAMLRHRDFAGRTEDFGIACVEAAWNGQFARLTHRDVLGAVMGL 120

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           GI RE IGDI L     A+ L   ++A +LI +L  +G VSV      L  +     RTK
Sbjct: 121 GIEREMIGDI-LPAPDTAKILCDAKIAPFLIENLTMIGAVSVKTAPSDLAEIAPREERTK 179

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
             +   ASLR+D++ +AGF +SRS+  + I+   V+ NW +      T++ GD++S+ G+
Sbjct: 180 EIRATVASLRLDSIVAAGFGISRSRAADDIAADKVKHNWQSTASASKTVKEGDVLSMRGR 239

Query: 299 GRIKIGEIN-STRKGKFAVELIQYL 322
           GR+++ E+   T+KG+  V L ++ 
Sbjct: 240 GRVEVTEVRGQTKKGRTVVVLHRFF 264


>gi|326803766|ref|YP_004321584.1| S4 domain-containing protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651380|gb|AEA01563.1| S4 domain protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 261

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 124/241 (51%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  ++    R +S  +   S FL P         + K  D++ +  GGYPQAE  R+ + 
Sbjct: 17  VDQVINWKNRVASSFQPFLSHFLDPREQAIVYSIIGKDEDIQVIDFGGYPQAEMRRMIIA 76

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
                 +D D  ++ + I     F    H   LG++LG G+ R +IGDII   +   QF 
Sbjct: 77  PRYEEVNDGDFNISLIQINYAAKFNHIEHRQVLGTLLGQGLQRNRIGDII-HSDLDWQFF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +   L D++ + ++++G VSV    +     ++   P     +++ AS R+D + S GF 
Sbjct: 136 IDASLIDFVNSQIQRIGKVSVKLEAVDFADRIQVADPWQPLERSL-ASFRMDLVLSEGFN 194

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
           LSRSK+ + I  G V+ NW  +T +  T+  GDI+S+   GR+++ ++   ++KGK+ V+
Sbjct: 195 LSRSKVKSAIEAGLVKYNWMPLTNSAQTVSEGDILSLRHHGRLRLDKVLKVSKKGKYRVQ 254

Query: 318 L 318
           L
Sbjct: 255 L 255


>gi|219670055|ref|YP_002460490.1| RNA-binding S4 domain-containing protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219540315|gb|ACL22054.1| RNA-binding S4 domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 265

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 12/258 (4%)

Query: 69  LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
           LK   +K    E  H+L++   A  + + + + FL   +    E ++  E LA      +
Sbjct: 10  LKFWTEKEMRLEGAHLLDLCNEALGQGQPVWTPFLGQALANWLEGILQREGLA---FRLE 66

Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GG+P AER R L V  P+ L + P  + AL  T         H   LGS++G G+ RE I
Sbjct: 67  GGFPDAERVRFLMVEDPDVLDNVPSEIRALQATPADPRGKLDHRQVLGSLMGLGLKREVI 126

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTI 243
           GDI L  E+     V  E+AD+L++  +K G   +   R+  +  + E P  + K  +  
Sbjct: 127 GDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEKDVEIPLEQGKERRIT 182

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            AS R+DA+AS+GF +SR+    LI  G V+ N   V K    ++ GDI+S  G GR+++
Sbjct: 183 AASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKADLEVKPGDILSCRGYGRMRL 242

Query: 304 GEINSTRKGKFAVELIQY 321
            E   TRKG+ A  +I Y
Sbjct: 243 LEFQETRKGRMAWNVILY 260


>gi|260438388|ref|ZP_05792204.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292808974|gb|EFF68179.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 250

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 129/244 (52%), Gaps = 14/244 (5%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHP 142
           +E A     R     +DFL   + K+++    + +L  V+    GGY  AER  +     
Sbjct: 13  MEAADNCYYRNVPTSTDFL--DIYKQNLFNTVIRELPPVQYRFDGGYELAERKVIMFLPQ 70

Query: 143 EALTSDPDIVAALSITGNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
           ++  SD   +       N  F +  +H D+LGSI+G GI R+K+GDI+L  +  A    +
Sbjct: 71  DSEISDLPFLTLKVTPRNLHFTEKLNHRDYLGSIMGLGIKRDKVGDILLY-DNFAYIFCM 129

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFK 258
             +A+YL  +L K+ N  V+ T I      YEP    S++ I+   ASLR+DA+ + GF 
Sbjct: 130 KSIAEYLTDNLLKIRNTYVTVTEISNEEFIYEP----SYEVIKGSVASLRLDAVIALGFN 185

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVE 317
            SRS + + I +G V VN   +T N   L+ GDI+SV G G+I+ +  ++ T+KG+  + 
Sbjct: 186 GSRSHITSYIIDGKVSVNGRIITSNAYNLKAGDIISVHGLGKIRYMDTLSETKKGRIMIT 245

Query: 318 LIQY 321
           + +Y
Sbjct: 246 INKY 249


>gi|326791369|ref|YP_004309190.1| RNA-binding S4 domain-containing protein [Clostridium lentocellum
           DSM 5427]
 gi|326542133|gb|ADZ83992.1| RNA-binding S4 domain protein [Clostridium lentocellum DSM 5427]
          Length = 259

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 9/259 (3%)

Query: 69  LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQ 126
           L  + D +    VK +LE ++R+  +   + +DF     L  SM+   +E+         
Sbjct: 5   LNHINDADEKRFVKMMLEYSKRSEQQFRPIFTDFYNKEWLL-SMIDRYIEESTKQMCYFY 63

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GG+ +AER  L +   E    D  I+A  L +    G +  +H D+LG++LG GI RE I
Sbjct: 64  GGFEEAERQVLGIAPYEIQEEDFPIMALELKVKTGIG-KALTHRDYLGALLGLGIERETI 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNV-SVSCTRIPLLALEYEPPRTKSFKTIE 244
           GDI+++   GA  +    +  Y+ ++L  +G   ++    IP   L+  PP+ KS++T  
Sbjct: 123 GDIVIK-PFGAYIIANESMVSYIYSNLLSIGKCQNIEQQVIPFSQLQINPPQIKSYETTV 181

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+D + +AGF LSR     LI    V+ N  T T N   ++ GD ++V G G+IK+ 
Sbjct: 182 ASLRLDVIVAAGFGLSRGVCTKLIQADRVKCNGVTST-NKQLIKEGDHITVRGYGKIKLK 240

Query: 305 EINS-TRKGKFAVELIQYL 322
           +I+  T+K +  + + +Y+
Sbjct: 241 QISGLTKKDRIHITIEKYV 259


>gi|399052164|ref|ZP_10741729.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
 gi|398050030|gb|EJL42420.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
          Length = 257

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 132/252 (52%), Gaps = 14/252 (5%)

Query: 72  VGDKNAIEE---VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
           V D  A EE   V+  LEM      ++ +  +DF+ P           ++ DVK  A GG
Sbjct: 3   VFDHFAKEERPFVERALEMLTLVERKQAMRLTDFVDPRQWHIMKSLTSQVRDVKISASGG 62

Query: 129 YPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           Y  AER R+ + HPE +  +P+   +A L+I  +  F    H D +G++L  G+ REK G
Sbjct: 63  YEGAERVRVLI-HPEYIEVEPEDFRLALLAIKADQRFHTLEHRDVMGALLHAGMKREKFG 121

Query: 187 DIILQGEKGAQF-LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK-SFKTIE 244
           D++   + G  + +V  E+AD++ T + ++   SV   R+   +  + PP T+ + KTI 
Sbjct: 122 DMLT--DVGTCYAIVAEEVADFVCTQVTQIHRTSVQFERVAWES--FTPPATRFAEKTIT 177

Query: 245 A-SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
             S R+DA+      +SR+K +  I  G V+VNW       T L+ GD+VS++G GR KI
Sbjct: 178 VPSPRIDAVIGEVHNMSRAKALVPIRAGKVKVNWKVTEDPSTQLQQGDMVSLAGYGRFKI 237

Query: 304 GEI-NSTRKGKF 314
            EI   TR G+ 
Sbjct: 238 LEIAGPTRSGRL 249


>gi|89895631|ref|YP_519118.1| hypothetical protein DSY2885 [Desulfitobacterium hafniense Y51]
 gi|89335079|dbj|BAE84674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 268

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 130/258 (50%), Gaps = 12/258 (4%)

Query: 69  LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
           LK   +K    E  H+L++   A  + + + + FL   +    E ++  E LA      +
Sbjct: 13  LKFWTEKEMRLEGAHLLDLCNEALGQGQPVWTPFLGQALANWLEGILQREGLA---FRLE 69

Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GG+P AER R L V  P+ L + P  + AL  T         H   LGS++G G+ RE I
Sbjct: 70  GGFPDAERVRFLVVADPDVLDNVPSEIRALQATTVDPRGKLDHRQVLGSLMGLGLKREVI 129

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTI 243
           GDI L  E+     V  E+AD+L++  +K G   +   R+  +    E P  + K  +  
Sbjct: 130 GDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEQNVEIPLEQGKERRIT 185

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            AS R+DA+AS+GF +SR+    LI  G V+ N   V K    ++ GDI+S  G GR+++
Sbjct: 186 AASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKADLEVKPGDILSCRGYGRMRL 245

Query: 304 GEINSTRKGKFAVELIQY 321
            E   TRKG+ A  +I Y
Sbjct: 246 LEFQETRKGRIAWNVILY 263


>gi|422698173|ref|ZP_16756093.1| S4 domain protein [Enterococcus faecalis TX1346]
 gi|315173285|gb|EFU17302.1| S4 domain protein [Enterococcus faecalis TX1346]
          Length = 260

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     GGY QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V       + +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYIQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|332653672|ref|ZP_08419416.1| S4 domain protein [Ruminococcaceae bacterium D16]
 gi|332516758|gb|EGJ46363.1| S4 domain protein [Ruminococcaceae bacterium D16]
          Length = 265

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 99  HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALTSDPD-IVA 153
           H+ FL+P         L      + V  GGYP AER  C         E   +DP+  +A
Sbjct: 38  HTPFLSPGERASVTDLLSAWGHPRHVFFGGYPDAERTVCLFLPDWQEEEDAIADPEGPLA 97

Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           AL  T   G +  SH D LGS++G GI REK+GDI+++G +  Q L + +    L++  E
Sbjct: 98  ALEATFPNGAE-LSHRDILGSLMGLGITREKLGDILVEGNR-CQVLALRDALPILLSQWE 155

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
             G        I L  L  +PP+ K+ +   A+LR+DA+ ++GF  SRSK   L+S G V
Sbjct: 156 SAGRWKAKLREISLSELTPKPPQVKTIRDTVAALRLDAVLASGFSTSRSKAAQLVSAGRV 215

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
            VN     K+  T+  GD++S  G G+  + E+   ++KG+  + L +Y+
Sbjct: 216 SVNHRECMKSDRTVEQGDVLSCRGLGKCVVKEVLGQSKKGRIMLVLERYI 265


>gi|123966750|ref|YP_001011831.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
           9515]
 gi|123201116|gb|ABM72724.1| Uncharacterized conserved protein, contains S4-like domain
           [Prochlorococcus marinus str. MIT 9515]
          Length = 263

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 98  LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA---- 153
            +S F+   +LKE     E L D K    GGYP A++ +++    + +  + +++     
Sbjct: 38  FNSTFVCEEILKE----FENLNDFKFFVFGGYPSAQKSKIACFREDNVPDENELIKNFPA 93

Query: 154 -ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 212
             + + GNF F   +  DF   +   G+  E+IGDI   G++GAQ ++     + L   +
Sbjct: 94  KGILMKGNFLFDNATQDDFRSLLRDNGLIEERIGDIWTTGDRGAQGIIDDSKIEDLNEKV 153

Query: 213 EKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
             + +V V    + L +L+    R+ K   T+EAS R+DA+ASAGF++SR+K++  I  G
Sbjct: 154 FFLRDVKVKIQIVDLDSLQIPVGRSQKLINTVEASTRLDAIASAGFRISRTKILERIETG 213

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 320
            +++N  TV K   +L+ GD V +  KG ++I ++  T++ ++ ++LI+
Sbjct: 214 MLKLNGKTVKKGTISLKVGDKVQLDNKGFVEILDLEMTKRERWKIKLIR 262


>gi|401565106|ref|ZP_10805961.1| S4 domain protein [Selenomonas sp. FOBRC6]
 gi|400188139|gb|EJO22313.1| S4 domain protein [Selenomonas sp. FOBRC6]
          Length = 264

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 5/199 (2%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGY  AER R  + H +     PD   +A +  + N  F   +H D LG+++G GI RE 
Sbjct: 68  GGYTGAERQRAMLRHQD-FRGTPDGFAIACVEASWNGQFARLTHRDVLGAVMGLGIEREL 126

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDI L     A+ +   ++AD+++++L  +G V        L  +     RTK  +   
Sbjct: 127 IGDI-LPAPDTAKIICDAKIADFIVSNLTMIGAVGAKAALSNLEEIAPREERTKEIRATV 185

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+D++ +AGF +SRS+  + I+   V++NW +      T++ GD++S+ G+GRI++ 
Sbjct: 186 ASLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRIEVT 245

Query: 305 EI-NSTRKGKFAVELIQYL 322
           E+   T+KG+  V L ++ 
Sbjct: 246 EVRGQTKKGRTVVVLNRFF 264


>gi|256957094|ref|ZP_05561265.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
 gi|422711803|ref|ZP_16768730.1| S4 domain protein [Enterococcus faecalis TX0027]
 gi|256947590|gb|EEU64222.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
 gi|315034230|gb|EFT46162.1| S4 domain protein [Enterococcus faecalis TX0027]
          Length = 260

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     GGY QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEVKTKKEKFRVLL 255


>gi|402303250|ref|ZP_10822346.1| S4 domain protein [Selenomonas sp. FOBRC9]
 gi|400378880|gb|EJP31730.1| S4 domain protein [Selenomonas sp. FOBRC9]
          Length = 264

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 111/199 (55%), Gaps = 5/199 (2%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG--NFGFQPCSHGDFLGSILGTGIAREK 184
           GGY  AER R  + H E     P     + +T   N  F   +H D LG+++G GI R  
Sbjct: 68  GGYAGAERQRAMLLH-EDFAGTPGGCEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGG 126

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDI+L G+  A+ L   ++A +++  L  +G V V+     L  +     RTK  +   
Sbjct: 127 VGDILLAGDT-AKILCDTKMAHFIMEELTMIGAVRVTTALGDLADIAPREERTKEIRATV 185

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+DA+A+AGF +SRS+  + I+   V++NW +       ++ GD++S+ G+GR+++ 
Sbjct: 186 ASLRLDAIAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNIKQGDVLSMRGRGRLEVT 245

Query: 305 EI-NSTRKGKFAVELIQYL 322
           E+   T+KG+ +V L +Y 
Sbjct: 246 EVRGQTKKGRISVVLHRYF 264


>gi|312793530|ref|YP_004026453.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180670|gb|ADQ40840.1| RNA-binding S4 domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 260

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 99  HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
           +SDFL+P  +K ++  L K  + +     GGY  +ER  L++   +      ++   +  
Sbjct: 33  YSDFLSPFAIKYAVEVLLKSQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTYPIQT 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                    SH   LGS++G G+ R+KIGDI+++ E  A   V  E+A Y++T+++K+G 
Sbjct: 93  ILIEAKNNLSHRQILGSLIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTNIDKIGK 151

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVR 274
             V C+ +    ++ +     S K I    ASLRVD++ S GF +SR +  +LI    V 
Sbjct: 152 EKVKCSIVENGQIDIKWFINNSSKRIVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           VNW  + K    ++ GD++SV   GR+KI ++ ++T+KG+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLLSVRHHGRLKIEKVLSTTKKGRISIEVLRF 259


>gi|90962019|ref|YP_535935.1| RNA binding protein [Lactobacillus salivarius UCC118]
 gi|90821213|gb|ABD99852.1| RNA binding protein [Lactobacillus salivarius UCC118]
          Length = 262

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY  AER R ++ +P      D D  +  + I  
Sbjct: 38  FLNPREQYIAQSLIHKKQDVKVSFSGGYKNAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE IGDII Q +   QFL   E++DY    +++VG + 
Sbjct: 97  PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253


>gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583]
 gi|227517924|ref|ZP_03947973.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
 gi|227555111|ref|ZP_03985158.1| ribosomal protein S4e [Enterococcus faecalis HH22]
 gi|229546848|ref|ZP_04435573.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
 gi|229548942|ref|ZP_04437667.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
 gi|255971455|ref|ZP_05422041.1| S4 domain-containing protein [Enterococcus faecalis T1]
 gi|255974070|ref|ZP_05424656.1| RNA-binding S4 [Enterococcus faecalis T2]
 gi|256761759|ref|ZP_05502339.1| S4 domain-containing protein [Enterococcus faecalis T3]
 gi|256852654|ref|ZP_05558025.1| S4 domain-containing protein [Enterococcus faecalis T8]
 gi|256960185|ref|ZP_05564356.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
 gi|256962573|ref|ZP_05566744.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
 gi|257077890|ref|ZP_05572251.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
 gi|257081254|ref|ZP_05575615.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
 gi|257083912|ref|ZP_05578273.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
 gi|257086360|ref|ZP_05580721.1| RNA-binding protein S4 [Enterococcus faecalis D6]
 gi|257089410|ref|ZP_05583771.1| S4 RNA binding protein [Enterococcus faecalis CH188]
 gi|257415620|ref|ZP_05592614.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
 gi|257418591|ref|ZP_05595585.1| S4 RNA binding protein [Enterococcus faecalis T11]
 gi|257421250|ref|ZP_05598240.1| S4 RNA binding protein [Enterococcus faecalis X98]
 gi|293382550|ref|ZP_06628484.1| YlmH protein [Enterococcus faecalis R712]
 gi|293387849|ref|ZP_06632388.1| YlmH protein [Enterococcus faecalis S613]
 gi|294779255|ref|ZP_06744659.1| S4 domain protein [Enterococcus faecalis PC1.1]
 gi|307268081|ref|ZP_07549469.1| S4 domain protein [Enterococcus faecalis TX4248]
 gi|307272015|ref|ZP_07553281.1| S4 domain protein [Enterococcus faecalis TX0855]
 gi|307275484|ref|ZP_07556626.1| S4 domain protein [Enterococcus faecalis TX2134]
 gi|307278948|ref|ZP_07560007.1| S4 domain protein [Enterococcus faecalis TX0860]
 gi|307289397|ref|ZP_07569351.1| S4 domain protein [Enterococcus faecalis TX0109]
 gi|307290037|ref|ZP_07569961.1| S4 domain protein [Enterococcus faecalis TX0411]
 gi|312901040|ref|ZP_07760331.1| S4 domain protein [Enterococcus faecalis TX0470]
 gi|312904563|ref|ZP_07763721.1| S4 domain protein [Enterococcus faecalis TX0635]
 gi|312906847|ref|ZP_07765844.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
 gi|312952727|ref|ZP_07771589.1| S4 domain protein [Enterococcus faecalis TX0102]
 gi|312978898|ref|ZP_07790624.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
 gi|384518107|ref|YP_005705412.1| S4 domain-containing protein [Enterococcus faecalis 62]
 gi|397699394|ref|YP_006537182.1| S4 domain protein [Enterococcus faecalis D32]
 gi|421513308|ref|ZP_15960085.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
 gi|422685579|ref|ZP_16743795.1| S4 domain protein [Enterococcus faecalis TX4000]
 gi|422689642|ref|ZP_16747746.1| S4 domain protein [Enterococcus faecalis TX0630]
 gi|422692291|ref|ZP_16750313.1| S4 domain protein [Enterococcus faecalis TX0031]
 gi|422694608|ref|ZP_16752599.1| S4 domain protein [Enterococcus faecalis TX4244]
 gi|422703302|ref|ZP_16761124.1| S4 domain protein [Enterococcus faecalis TX1302]
 gi|422705611|ref|ZP_16763407.1| S4 domain protein [Enterococcus faecalis TX0043]
 gi|422713480|ref|ZP_16770230.1| S4 domain protein [Enterococcus faecalis TX0309A]
 gi|422717493|ref|ZP_16774177.1| S4 domain protein [Enterococcus faecalis TX0309B]
 gi|422721041|ref|ZP_16777646.1| S4 domain protein [Enterococcus faecalis TX0017]
 gi|422722954|ref|ZP_16779503.1| S4 domain protein [Enterococcus faecalis TX2137]
 gi|422727525|ref|ZP_16783966.1| S4 domain protein [Enterococcus faecalis TX0312]
 gi|422729992|ref|ZP_16786387.1| S4 domain protein [Enterococcus faecalis TX0012]
 gi|422735191|ref|ZP_16791465.1| S4 domain protein [Enterococcus faecalis TX1341]
 gi|422868629|ref|ZP_16915167.1| S4 domain protein [Enterococcus faecalis TX1467]
 gi|424679105|ref|ZP_18115936.1| S4 domain protein [Enterococcus faecalis ERV103]
 gi|424682303|ref|ZP_18119078.1| S4 domain protein [Enterococcus faecalis ERV116]
 gi|424684054|ref|ZP_18120782.1| S4 domain protein [Enterococcus faecalis ERV129]
 gi|424686879|ref|ZP_18123541.1| S4 domain protein [Enterococcus faecalis ERV25]
 gi|424690051|ref|ZP_18126587.1| S4 domain protein [Enterococcus faecalis ERV31]
 gi|424692289|ref|ZP_18128792.1| S4 domain protein [Enterococcus faecalis ERV37]
 gi|424698027|ref|ZP_18134335.1| S4 domain protein [Enterococcus faecalis ERV41]
 gi|424700554|ref|ZP_18136738.1| S4 domain protein [Enterococcus faecalis ERV62]
 gi|424705582|ref|ZP_18141612.1| S4 domain protein [Enterococcus faecalis ERV63]
 gi|424712420|ref|ZP_18144603.1| S4 domain protein [Enterococcus faecalis ERV65]
 gi|424716268|ref|ZP_18145581.1| S4 domain protein [Enterococcus faecalis ERV68]
 gi|424721631|ref|ZP_18150713.1| S4 domain protein [Enterococcus faecalis ERV72]
 gi|424723706|ref|ZP_18152661.1| S4 domain protein [Enterococcus faecalis ERV73]
 gi|424729462|ref|ZP_18158063.1| S4 domain protein [Enterococcus faecalis ERV81]
 gi|424735079|ref|ZP_18163552.1| S4 domain protein [Enterococcus faecalis ERV85]
 gi|424751824|ref|ZP_18179845.1| S4 domain protein [Enterococcus faecalis ERV93]
 gi|424757106|ref|ZP_18184870.1| S4 domain protein [Enterococcus faecalis R508]
 gi|29343044|gb|AAO80807.1| S4 domain protein [Enterococcus faecalis V583]
 gi|227074678|gb|EEI12641.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
 gi|227175779|gb|EEI56751.1| ribosomal protein S4e [Enterococcus faecalis HH22]
 gi|229305963|gb|EEN71959.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
 gi|229308013|gb|EEN74000.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
 gi|255962473|gb|EET94949.1| S4 domain-containing protein [Enterococcus faecalis T1]
 gi|255966942|gb|EET97564.1| RNA-binding S4 [Enterococcus faecalis T2]
 gi|256683010|gb|EEU22705.1| S4 domain-containing protein [Enterococcus faecalis T3]
 gi|256711999|gb|EEU27036.1| S4 domain-containing protein [Enterococcus faecalis T8]
 gi|256950681|gb|EEU67313.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
 gi|256953069|gb|EEU69701.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
 gi|256985920|gb|EEU73222.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
 gi|256989284|gb|EEU76586.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
 gi|256991942|gb|EEU79244.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
 gi|256994390|gb|EEU81692.1| RNA-binding protein S4 [Enterococcus faecalis D6]
 gi|256998222|gb|EEU84742.1| S4 RNA binding protein [Enterococcus faecalis CH188]
 gi|257157448|gb|EEU87408.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
 gi|257160419|gb|EEU90379.1| S4 RNA binding protein [Enterococcus faecalis T11]
 gi|257163074|gb|EEU93034.1| S4 RNA binding protein [Enterococcus faecalis X98]
 gi|291080098|gb|EFE17462.1| YlmH protein [Enterococcus faecalis R712]
 gi|291082696|gb|EFE19659.1| YlmH protein [Enterococcus faecalis S613]
 gi|294453622|gb|EFG22020.1| S4 domain protein [Enterococcus faecalis PC1.1]
 gi|295113824|emb|CBL32461.1| Uncharacterized conserved protein, contains S4-like domain
           [Enterococcus sp. 7L76]
 gi|306498879|gb|EFM68373.1| S4 domain protein [Enterococcus faecalis TX0411]
 gi|306499652|gb|EFM69015.1| S4 domain protein [Enterococcus faecalis TX0109]
 gi|306504335|gb|EFM73546.1| S4 domain protein [Enterococcus faecalis TX0860]
 gi|306507872|gb|EFM77000.1| S4 domain protein [Enterococcus faecalis TX2134]
 gi|306511310|gb|EFM80314.1| S4 domain protein [Enterococcus faecalis TX0855]
 gi|306515722|gb|EFM84249.1| S4 domain protein [Enterococcus faecalis TX4248]
 gi|310627101|gb|EFQ10384.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
 gi|310629243|gb|EFQ12526.1| S4 domain protein [Enterococcus faecalis TX0102]
 gi|310632076|gb|EFQ15359.1| S4 domain protein [Enterococcus faecalis TX0635]
 gi|311288335|gb|EFQ66891.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
 gi|311291866|gb|EFQ70422.1| S4 domain protein [Enterococcus faecalis TX0470]
 gi|315026977|gb|EFT38909.1| S4 domain protein [Enterococcus faecalis TX2137]
 gi|315029690|gb|EFT41622.1| S4 domain protein [Enterococcus faecalis TX4000]
 gi|315031713|gb|EFT43645.1| S4 domain protein [Enterococcus faecalis TX0017]
 gi|315147952|gb|EFT91968.1| S4 domain protein [Enterococcus faecalis TX4244]
 gi|315149523|gb|EFT93539.1| S4 domain protein [Enterococcus faecalis TX0012]
 gi|315153077|gb|EFT97093.1| S4 domain protein [Enterococcus faecalis TX0031]
 gi|315156850|gb|EFU00867.1| S4 domain protein [Enterococcus faecalis TX0043]
 gi|315157636|gb|EFU01653.1| S4 domain protein [Enterococcus faecalis TX0312]
 gi|315165134|gb|EFU09151.1| S4 domain protein [Enterococcus faecalis TX1302]
 gi|315168033|gb|EFU12050.1| S4 domain protein [Enterococcus faecalis TX1341]
 gi|315574255|gb|EFU86446.1| S4 domain protein [Enterococcus faecalis TX0309B]
 gi|315577383|gb|EFU89574.1| S4 domain protein [Enterococcus faecalis TX0630]
 gi|315581590|gb|EFU93781.1| S4 domain protein [Enterococcus faecalis TX0309A]
 gi|323480240|gb|ADX79679.1| S4 domain protein [Enterococcus faecalis 62]
 gi|329574343|gb|EGG55915.1| S4 domain protein [Enterococcus faecalis TX1467]
 gi|397336033|gb|AFO43705.1| S4 domain protein [Enterococcus faecalis D32]
 gi|401673562|gb|EJS79943.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
 gi|402349353|gb|EJU84304.1| S4 domain protein [Enterococcus faecalis ERV116]
 gi|402349386|gb|EJU84336.1| S4 domain protein [Enterococcus faecalis ERV103]
 gi|402362990|gb|EJU97500.1| S4 domain protein [Enterococcus faecalis ERV129]
 gi|402365185|gb|EJU99611.1| S4 domain protein [Enterococcus faecalis ERV31]
 gi|402366586|gb|EJV00956.1| S4 domain protein [Enterococcus faecalis ERV25]
 gi|402373645|gb|EJV07716.1| S4 domain protein [Enterococcus faecalis ERV62]
 gi|402373936|gb|EJV07984.1| S4 domain protein [Enterococcus faecalis ERV41]
 gi|402378680|gb|EJV12518.1| S4 domain protein [Enterococcus faecalis ERV37]
 gi|402379006|gb|EJV12827.1| S4 domain protein [Enterococcus faecalis ERV63]
 gi|402380914|gb|EJV14653.1| S4 domain protein [Enterococcus faecalis ERV65]
 gi|402388461|gb|EJV21900.1| S4 domain protein [Enterococcus faecalis ERV68]
 gi|402390798|gb|EJV24119.1| S4 domain protein [Enterococcus faecalis ERV72]
 gi|402393916|gb|EJV27122.1| S4 domain protein [Enterococcus faecalis ERV81]
 gi|402397415|gb|EJV30433.1| S4 domain protein [Enterococcus faecalis ERV73]
 gi|402404696|gb|EJV37312.1| S4 domain protein [Enterococcus faecalis ERV85]
 gi|402405320|gb|EJV37917.1| S4 domain protein [Enterococcus faecalis ERV93]
 gi|402407634|gb|EJV40151.1| S4 domain protein [Enterococcus faecalis R508]
          Length = 260

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     GGY QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|344996021|ref|YP_004798364.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|343964240|gb|AEM73387.1| RNA-binding S4 domain protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 260

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 99  HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
           +SDFL+P  +K ++  L K  + +     GGY  +ER  L++   +      ++   +  
Sbjct: 33  YSDFLSPFAIKYAVEVLLKNQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTYPIQT 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                    SH   LGS++G G+ R+KIGDI+++ E  A   V  E+A Y++T+++K+G 
Sbjct: 93  ILIEAKNNLSHRQILGSLIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTNIDKIGK 151

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVR 274
             V C+ +    ++ +     S K I    ASLRVD++ S GF +SR +  +LI    V 
Sbjct: 152 EKVKCSIVENGQIDIKWFINNSSKRIVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           VNW  + K    ++ GD++SV   GR+KI ++ ++T+KG+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLLSVRHHGRLKIEKVLSTTKKGRISIEVLRF 259


>gi|424671133|ref|ZP_18108148.1| S4 domain protein [Enterococcus faecalis 599]
 gi|402359693|gb|EJU94318.1| S4 domain protein [Enterococcus faecalis 599]
          Length = 260

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     GGY QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVKKVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
 gi|227867126|gb|EEJ74547.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
          Length = 262

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY  AER R ++ +P      D D  +  + I  
Sbjct: 38  FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE IGDII Q +   QFL   E++DY    +++VG + 
Sbjct: 97  PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253


>gi|350269426|ref|YP_004880734.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
           Sjm18-20]
 gi|348594268|dbj|BAK98228.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
           Sjm18-20]
          Length = 265

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 128/246 (52%), Gaps = 8/246 (3%)

Query: 83  HILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
            +L+   +  +R     +DFL+P      E ++ L  +   + V  GGY  AER ++ + 
Sbjct: 22  RVLDRLEQTRNRNIPAATDFLSPQEQASAEMLLHLAGVDGTEYVPLGGYEGAER-KIFLF 80

Query: 141 HPEALTSDPDIVAALSITGNFGFQP---CSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
            P+ L +      +        ++P    SH D LGS++G GI REK GDI++ G++   
Sbjct: 81  LPDWLDAQSAAEQSPIRCLRAKYRPEYDLSHRDILGSLMGMGITREKTGDILV-GKESCD 139

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V+  +AD+L+ S ++ G   +S + +    L       +  +    SLR+DA+A+ GF
Sbjct: 140 LIVLDSVADFLLQSWDQAGRAKLSVSAVGTADLSMPEESCEEVRDTVMSLRLDAVAATGF 199

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           K++R K   LI +G V+VNW   TK    L  GD VS  G G+ K+ E+   T+KG+ ++
Sbjct: 200 KMARGKAAALIGSGRVQVNWLDCTKPDRLLGEGDTVSARGLGKFKVAEVGGVTKKGRTSL 259

Query: 317 ELIQYL 322
            + +YL
Sbjct: 260 VIKRYL 265


>gi|365157067|ref|ZP_09353348.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
 gi|363625801|gb|EHL76812.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
          Length = 258

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E +  +LE  R+   +      DFL P   +     L K  +V     GG  QAER R  
Sbjct: 14  EFIDDVLESIRQVEEKYAPKLMDFLDPREQQILSSLLGKNTEVNVSFFGGTVQAERKRAL 73

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +  P       D  VA   I     F   +H D LGS++G G+ REK GDI L  E   Q
Sbjct: 74  LYPPYFSVQQEDFQVALFEILYPQKFVVLNHRDVLGSLMGLGLRREKFGDI-LAKEGRFQ 132

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAG 256
           FLV  E+AD++  +  +VG  SV      L  A+E E    +  +T  +SLR+D + SA 
Sbjct: 133 FLVAAEMADFVKLNFRQVGKASVQLEEKKLEEAIESEES-WQPVQTTVSSLRLDVMISAY 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
            KLSR K+  +I +G V+VNW  V         GD++SV GKGR K+  I+  T+K K+ 
Sbjct: 192 AKLSRQKVQTMIKSGLVKVNWKVVDNPAFLCEEGDVLSVRGKGRCKLLSIDDKTKKEKWR 251

Query: 316 VEL 318
           + L
Sbjct: 252 ITL 254


>gi|301300395|ref|ZP_07206597.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851997|gb|EFK79679.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 262

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY  AER R ++ +P      D D  +  + I  
Sbjct: 38  FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-TIFYPSYYEVQDDDFNLELIMIKY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE IGDII Q +   QFL   E++DY    +++VG + 
Sbjct: 97  PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGITRKDKLRI 253


>gi|342218196|ref|ZP_08710820.1| S4 domain protein [Megasphaera sp. UPII 135-E]
 gi|341590796|gb|EGS34026.1| S4 domain protein [Megasphaera sp. UPII 135-E]
          Length = 261

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 154
           S+F++P  ++  E++ A EK+  ++    GGY  AER RL+     +  A+  D   + A
Sbjct: 39  SEFVSPGAIQIGETICAHEKMLQLRVF--GGYEGAERVRLAFVDRTYEGAVQYD---IQA 93

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
             I  +  ++  SH D LGS++  GI R + GDI++Q E  A  L+    A  +   L K
Sbjct: 94  CHIGWDSRYRLLSHRDVLGSLMSMGIERSRFGDILMQ-ESDAIVLLDTVTAQCVCAELHK 152

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           +  V+V+     L  +  +  + K  KT  ASLR+DA+ ++GF +SR+K    I    V+
Sbjct: 153 IAMVTVTVEPYSLKDIVPKQEKVKEIKTTVASLRLDAITASGFGISRTKAAEAIKGERVQ 212

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 322
           VNW  V      ++ GD++S+ GKGR+++ +I   +RKG+  V L +Y+
Sbjct: 213 VNWLPVQSVSREVQVGDVISLRGKGRMEVADITGISRKGRTGVLLKRYM 261


>gi|335040583|ref|ZP_08533709.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
 gi|334179553|gb|EGL82192.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
          Length = 257

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 11/247 (4%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAER 134
           EE   +  MA  A   RE  H   LTP +     + +  +     DVK    GG+ QAER
Sbjct: 11  EERPFVERMAEWAELVRE-RHHPRLTPFLNPREQLIIRSVVGHAPDVKVKLWGGFQQAER 69

Query: 135 CRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
            R  +  P+ L  T D   +A L+I  +  +   +H D LGS+LG G+ RE +GDI++  
Sbjct: 70  KRAWII-PDYLDVTWDEFQLALLNIKAS-QWVNVTHRDVLGSLLGMGLKREVVGDILITP 127

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           E   Q +VV E+ +Y+   L ++G   V   +    AL       ++   I +SLR+D +
Sbjct: 128 E-TIQVIVVREMEEYIRLHLTRIGRHQVRAEKADWSALTVPEEEWQAVTAIVSSLRLDVI 186

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRK 311
            +   + SR+K V LI +G V+VNW    +    L+ GD +S+ G GR    EI+  TRK
Sbjct: 187 VAECTRQSRAKAVQLIESGRVKVNWKVEDRPAEVLKEGDTISIKGYGRFLFQEIDRKTRK 246

Query: 312 GKFAVEL 318
            KF + L
Sbjct: 247 DKFRIHL 253


>gi|452974556|gb|EME74376.1| RNA-binding protein YlmH [Bacillus sonorensis L12]
          Length = 258

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           +  +LE  +  + +  +  +DFL P   V+  S++   +  +VK    GG+ +AER R +
Sbjct: 16  IDQVLEWKQIVADQYRMKLTDFLDPREQVILNSLVG--QPDEVKLGFFGGFSEAERKR-A 72

Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           + +PE A  S  D  + A  +     F    H + LGS++G G+ R+K GD+I  G    
Sbjct: 73  ILYPEYAEPSAEDFQLQAYEVLYPQKFASIEHRELLGSLMGIGLKRQKFGDLIYAG-GIW 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           QF+   E+AD++ + L ++G V VS  +IPL  L+      +      +SLR+D++ SA 
Sbjct: 132 QFVCSEEVADFVFSQLGQIGKVKVSLEKIPLSKLKVPEQDVEIMDDTVSSLRLDSVCSAV 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
            +LSR K   L+ NG V+VNW  +     +L  GD +SV G GR  +  I+  T+KGK+
Sbjct: 192 SRLSRQKAQALVKNGLVKVNWKVIEDPSYSLAEGDKLSVRGFGRFTLKSIDGKTKKGKW 250


>gi|385840602|ref|YP_005863926.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
 gi|300214723|gb|ADJ79139.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
          Length = 277

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY  AER R ++ +P      D D  +  + I  
Sbjct: 53  FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 111

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE IGDII Q +   QFL   E++DY    +++VG + 
Sbjct: 112 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 170

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 171 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 230

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 231 VARPDYEVKYGDILSIRGYGRLRIDDLLGITRKDKLRI 268


>gi|384512698|ref|YP_005707791.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
 gi|430361444|ref|ZP_19426664.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
 gi|430368036|ref|ZP_19428018.1| S4 domain-containing protein [Enterococcus faecalis M7]
 gi|327534587|gb|AEA93421.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
 gi|429512465|gb|ELA02071.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
 gi|429516541|gb|ELA06031.1| S4 domain-containing protein [Enterococcus faecalis M7]
          Length = 260

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     GGY QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPVYYIPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|325288681|ref|YP_004264862.1| RNA-binding S4 domain-containing protein [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964082|gb|ADY54861.1| RNA-binding S4 domain protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 265

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 130/263 (49%), Gaps = 22/263 (8%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           ++L  V DK    E K+ILE  +  + R + L    L             + A  + +  
Sbjct: 18  NMLARVLDKLEAAESKNILENTKFLNEREQDLAERMLP------------ECAQFRYLFH 65

Query: 127 GGYPQAERCRL----SVGHPE-ALTSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGI 180
           GGY  A R  L       +PE A   + + +A   I   +      SH DFLGS+LG GI
Sbjct: 66  GGYESASRKVLVFFPDYMNPEQAFQGEENCLAC--IRAEYPADNELSHRDFLGSLLGCGI 123

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
            RE IGDI++ GE  A  +V+ E+  YL+ + E V  V V    I    L+    + +  
Sbjct: 124 KREAIGDILV-GEGSADIVVLKEILPYLLVNFEMVARVKVHVGEITAAELQVPEAKFRLI 182

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
           K   ASLR+D +ASAGF +SR K    I  G V +N    TK    +  G+++S  G G+
Sbjct: 183 KDTVASLRLDNIASAGFAVSREKASAGIKGGKVALNSLECTKADKLVSEGEVISWRGMGK 242

Query: 301 IKIGEI-NSTRKGKFAVELIQYL 322
           IK+ +I N T+KG+ A+ +++YL
Sbjct: 243 IKLQQIGNQTKKGRTAIVVLRYL 265


>gi|417810107|ref|ZP_12456787.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
 gi|335349979|gb|EGM51477.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
          Length = 262

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY  AER R ++ +P      D D  +  + I  
Sbjct: 38  FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    HG  LG++  +G+ RE IGDII Q +   QFL   E++DY    +++VG + 
Sbjct: 97  PVKFTSLIHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 156 VRLEDTPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKNKLRI 253


>gi|313895940|ref|ZP_07829494.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975365|gb|EFR40826.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 264

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 111/198 (56%), Gaps = 3/198 (1%)

Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGY  AER R  + H + A T     +  ++   N  F   +H D LG+++G GI R  +
Sbjct: 68  GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI+L G+  A+ L   ++  +++  L  +G V V+     L  +     RTK  +   A
Sbjct: 128 GDILLAGDT-AKILCDTKMVQFIMEELTMIGAVRVTTALGDLADIAPREERTKEIRATVA 186

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+DA+A+AGF +SRS+  + I+   V++NW +       ++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDAIAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNIKQGDVLSMRGRGRLEVTE 246

Query: 306 I-NSTRKGKFAVELIQYL 322
           +   T+KG+ +V L +Y 
Sbjct: 247 VRGQTKKGRISVVLHRYF 264


>gi|404329203|ref|ZP_10969651.1| RNA-binding S4 domain-containing protein [Sporolactobacillus vineae
           DSM 21990 = SL153]
          Length = 257

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
           +DFL P   +   + + K  DV+    GGYP AER R ++  P  +  + +     ++  
Sbjct: 34  TDFLDPRQQRVLELIIGKNDDVRVTFSGGYPDAERKR-ALLLPPYIPEEGEAFELTAVEV 92

Query: 160 NFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
            F   F   SH + LG++ GTG+ R+KIGD+++ G++ AQF+   ++  YL  +L  VG 
Sbjct: 93  AFASKFISLSHPELLGALTGTGVNRDKIGDLMVTGDR-AQFICTKDIEPYLRLNLTSVGK 151

Query: 218 VSVSCTRIPLLALEY-EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            +VSC  I    L + +    +S+ T+  SLR+DA+AS  + LSR+K   LI    VR+N
Sbjct: 152 NAVSCQAIGKDELIHNQLNWVESWGTV-PSLRLDAVASEIYHLSRAKTAELIDRKRVRIN 210

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           W  + +    L  GD++SV G GR KI  ++  T+K K  ++
Sbjct: 211 WELIDRRDFELAEGDLLSVRGYGRSKIISVDGLTKKHKIRLQ 252


>gi|167758166|ref|ZP_02430293.1| hypothetical protein CLOSCI_00504 [Clostridium scindens ATCC 35704]
 gi|167664063|gb|EDS08193.1| S4 domain protein [Clostridium scindens ATCC 35704]
          Length = 251

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K + E++R A +R  V  S+FL    L       + +   +    GGY  +ER +++   
Sbjct: 10  KRLAELSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSQYKTYGGYGLSER-QMAAFL 68

Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL  D   P  +  +S       +  SH D+LG+++  GI R K+GDI+++  K   F
Sbjct: 69  PDALYYDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIEDGKAILF 128

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
               ELA Y++  L ++ + +V  + +      YEP R +  K   AS+R+D + S  + 
Sbjct: 129 -AKEELAGYIMEHLTRIRHTTVKTSILSAFEDSYEP-RYEELKGTVASVRLDTVLSLAYP 186

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVE 317
           LSRSK+  LI    V VN   VT NG  L+ GDI+SV   GRI   G ++ T+KG++ V 
Sbjct: 187 LSRSKITGLIEGARVFVNGKLVTSNGYRLKEGDILSVRKMGRIGYNGILSETKKGRYMVS 246

Query: 318 LIQYL 322
           + +Y+
Sbjct: 247 IRKYI 251


>gi|422739827|ref|ZP_16794993.1| S4 domain protein [Enterococcus faecalis TX2141]
 gi|315144386|gb|EFT88402.1| S4 domain protein [Enterococcus faecalis TX2141]
          Length = 260

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     G Y QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPQETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|335357085|ref|ZP_08548955.1| RNA binding protein [Lactobacillus animalis KCTC 3501]
          Length = 260

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITG 159
           FL P     +   L+    +K  A+GG+ QAER RL + +P+     + D  +  L I  
Sbjct: 38  FLDPRQQHIAQFLLQADDMIKVKAEGGFAQAERKRL-LFYPDYYEPQEKDFELQLLEINY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE +GDII   ++  Q +V   ++DYL+  +E++G ++
Sbjct: 97  PTKFVSLTHGQILGTLANSGLEREVLGDIITDSQRW-QIVVQKNISDYLLQQVERIGKIN 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEAS-LRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           V    +PL      P      +T+ AS LR+D + +A + +SR+++  LI+   V++NW 
Sbjct: 156 VRLEEMPLTQ-RLVPNNDWELETVSASSLRIDTVIAAVYNISRNRVKELINAKKVQLNWM 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
            +TK  T L   DIVSV G GRIK+ ++   +++GK   E+
Sbjct: 215 VLTKPDTELGVLDIVSVRGFGRIKLIDVLGKSKRGKLRCEV 255


>gi|300859623|ref|ZP_07105711.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|422730879|ref|ZP_16787260.1| S4 domain protein [Enterococcus faecalis TX0645]
 gi|428766509|ref|YP_007152620.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
 gi|300850441|gb|EFK78190.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|315162934|gb|EFU06951.1| S4 domain protein [Enterococcus faecalis TX0645]
 gi|427184682|emb|CCO71906.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
          Length = 260

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     G Y QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  GDII  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|422699560|ref|ZP_16757424.1| S4 domain protein [Enterococcus faecalis TX1342]
 gi|315171938|gb|EFU15955.1| S4 domain protein [Enterococcus faecalis TX1342]
          Length = 260

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P         + + +D+     GGY QAER R  +     +  + D  V    I 
Sbjct: 36  TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG+++  G+ RE  G+II  G+K  Q  +  E+A +++  ++K+G +
Sbjct: 96  YPSKFATLSHGKILGTLMNVGVRREAFGNIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V         +       +  +T  +SLR+D++ SA F +SR +   LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             T+    L   DIVS+ G GR++I E+   T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255


>gi|420161635|ref|ZP_14668399.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
 gi|420161741|ref|ZP_14668503.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
 gi|394744748|gb|EJF33667.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
 gi|394745173|gb|EJF34069.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
          Length = 263

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAERCR--LSVG 140
           + R+A      + +DFL P         LE L     ++K    GGY  AE  R  L   
Sbjct: 23  LLRQAHDEYRPILTDFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
           + +   +D D+   + I     F    H D LG+++ +G+ R +IGDII   +K  Q +V
Sbjct: 79  YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDIITDEQKNWQIIV 137

Query: 201 VPELADYLITS--LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
              +A ++  S  LE++G V V    + +  + +        +T+ ASLR+D + + G+ 
Sbjct: 138 TNPIAQFVQQSPDLERIGRVKVRYLEVDIRDVLHPLQDYLLEETLAASLRLDIIVANGYN 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 317
           +SRSK   LI +G V++NWT + +    +   D++SV   GR+KI EIN  T+K K+ + 
Sbjct: 198 ISRSKAKELIEHGSVKINWTVMDRPDEVVAINDLISVRRYGRLKITEINGQTKKDKWRIS 257

Query: 318 L 318
           L
Sbjct: 258 L 258


>gi|336421662|ref|ZP_08601818.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
           5_1_57FAA]
 gi|336000133|gb|EGN30286.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
           5_1_57FAA]
          Length = 251

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K + E++R A +R  V  S+FL    L       + +        GGY  +ER +++   
Sbjct: 10  KRLAELSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSHYKTYGGYGLSER-QMAAFL 68

Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL  D   P  +  +S       +  SH D+LG+++  GI R K+GDI+++  K   F
Sbjct: 69  PDALYYDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIEDGKAILF 128

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
               ELA Y++  L ++ + +V  + +      YEP R +  K   AS+R+D + S  + 
Sbjct: 129 -AKEELAGYIMEHLTRIRHTTVKTSILSAFEDSYEP-RYEELKGTVASVRLDTVLSLAYP 186

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVE 317
           LSRSK+  LI    V VN   VT NG  L+ GDI+SV   GRI   G ++ T+KG++ V 
Sbjct: 187 LSRSKITGLIEGARVFVNGKLVTSNGYRLKEGDILSVRKMGRIGYNGILSETKKGRYMVS 246

Query: 318 LIQYL 322
           + +Y+
Sbjct: 247 IRKYI 251


>gi|417788480|ref|ZP_12436163.1| hypothetical protein, contains S4-like RNA binding domain
           [Lactobacillus salivarius NIAS840]
 gi|334308657|gb|EGL99643.1| hypothetical protein, contains S4-like RNA binding domain
           [Lactobacillus salivarius NIAS840]
          Length = 262

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY  AER R ++ +P      D D  +  + I  
Sbjct: 38  FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE IGDII + +   QFL   E++DY    +++VG + 
Sbjct: 97  PVKFTSLTHGQILGTLANSGLDREVIGDIIERNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253


>gi|253577876|ref|ZP_04855148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850194|gb|EES78152.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 250

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 7/246 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +K I E+A  +  R  V  SDFL             +   +     GGY  AER ++   
Sbjct: 8   LKRIRELANLSWQRDIVTFSDFLNLNEQNIVSSLKHQFPQIVMETSGGYENAER-QMVAF 66

Query: 141 HPEALTSDPDI-VAALSITGN-FGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           HP+AL    +  +  L I      F +  SH D+LG++L  G+ R  IGDI++Q +K A 
Sbjct: 67  HPDALAFTWEYPIDCLRIEPKALKFSEELSHRDYLGALLNLGVDRSVIGDIVVQ-KKAAW 125

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           F    ++ ++ + +L +V + ++  T++   + E+  P  +S     AS+R+D+L S  F
Sbjct: 126 FFCQNKMTEFFLENLCRVRHTNILITKVED-SDEFPRPVLESVSGTCASVRLDSLISLAF 184

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAV 316
           K SRS +V+ I  G V VN   +T NG   + GDI+SV GKGR I  G  + T+KG+ +V
Sbjct: 185 KTSRSSMVSYIEGGQVFVNGKLITSNGYEPKDGDIISVRGKGRFIFDGVSHQTKKGRCSV 244

Query: 317 ELIQYL 322
            +++Y+
Sbjct: 245 RIMRYV 250


>gi|312127591|ref|YP_003992465.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777610|gb|ADQ07096.1| RNA-binding S4 domain protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 260

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 99  HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
           +SDFL+P  +K ++  L K  + +   + GGY  +ER  L++   +      ++   +  
Sbjct: 33  YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYKGSERNILALFSSDFEEYAENLTYPIQT 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                    SH   LGS +G G+ R+KIGDI+++ E  A   V  E+A Y++T+++K+G 
Sbjct: 93  ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTNIDKIGK 151

Query: 218 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
             V C+ +    ++   +    +K      ASLRVD++ S GF +SR    +LI    V 
Sbjct: 152 EKVKCSLVENNQIDIKWFISDNSKRVVYTVASLRVDSVISHGFGISREAAADLIKQMKVA 211

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           VNW  + K    ++ GD+VSV   GR+KI ++ ++T+ G+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLVSVRHHGRLKIEKVLSTTKNGRISIEVLRF 259


>gi|295398667|ref|ZP_06808691.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
 gi|294973102|gb|EFG48905.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
          Length = 263

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 8/225 (3%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 159
           FL P  +    M + +  ++     GGYP AE  RC L+  + E   +D +I     I  
Sbjct: 39  FLNPREVAIVSMIIGQDDEIHYEFFGGYPNAENQRCVLAPTYYEIQPADFEI-TPFDIHY 97

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H   LG+ILG G+ R +IGDII  GEK  QF V  ++AD+L   ++K+G   
Sbjct: 98  ASKFNTIEHRQILGTILGQGVERNRIGDIIQAGEKW-QFFVDEKIADFLSFEMDKIGGSK 156

Query: 220 VSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           V   +I       +P    +  +   +SLR D + S GF++ R+K  +LI  G  ++NW 
Sbjct: 157 VRLVKIDHFDQISQPKSDWQPMEITLSSLRFDTIISDGFRIPRAKAKSLIEGGAAKLNWA 216

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKF--AVELIQ 320
            V      L  GDI SV G GR+K +     T+KGK   A+E+I+
Sbjct: 217 QVQDAKRQLNPGDIASVRGYGRLKYVATQMETKKGKIRVAIEIIK 261


>gi|302871852|ref|YP_003840488.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574711|gb|ADL42502.1| RNA-binding S4 domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 255

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQA 132
           +K+ I ++K+++E  R       + +SDFL+P  +K ++   L+K   +     GGY  +
Sbjct: 8   NKHEILKIKNLIEKTRFG-----IEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGS 62

Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
           ER  L++   +      ++   +            H   LGS +G GI R+KIGDI+++ 
Sbjct: 63  ERNILALFSRDFEEYAENLTYPIETILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVK- 121

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRV 249
           E  A   V  E+A Y++T+++K+G   V C+ +    ++ +   +   K I    ASLRV
Sbjct: 122 ENSALVFVKDEVATYIVTNIDKIGKEKVKCSIVRDNEVDIKYFFSNEGKRITYTLASLRV 181

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NS 308
           D++ S GF +SR +  +LI    V VNW  + K    ++ GD++SV   GR+KI ++   
Sbjct: 182 DSVISHGFGISREEAADLIRQMKVAVNWIYIDKPSYPIKEGDLISVRHYGRLKIDKVLTQ 241

Query: 309 TRKGKFAVELIQY 321
           T+KG+  +E++++
Sbjct: 242 TKKGRIRIEVLRF 254


>gi|418961536|ref|ZP_13513422.1| RNA binding protein [Lactobacillus salivarius SMXD51]
 gi|380344068|gb|EIA32415.1| RNA binding protein [Lactobacillus salivarius SMXD51]
          Length = 262

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
           FL P     +   + K  DVK    GGY   ER R ++ +P      D D  +  + I  
Sbjct: 38  FLNPREQYIAQSLIHKNQDVKVSFSGGYENTERKR-AIFYPSYYEVQDDDFNLELIMIKY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   +HG  LG++  +G+ RE IGDII Q +   QFL   E++DY    +++VG + 
Sbjct: 97  PAKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V     PL  +       +      +SLR+D+L S  F +SR    NLI    V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           V +    ++ GDI+S+ G GR++I + +  TRK K  +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253


>gi|312135163|ref|YP_004002501.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775214|gb|ADQ04701.1| RNA-binding S4 domain protein [Caldicellulosiruptor owensensis OL]
          Length = 260

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 11/253 (4%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQA 132
           +K+ I +VK+++E  R       + +SDFL+P  +K ++   L+K   +     GGY  +
Sbjct: 13  NKHEILKVKNLIEKIRWG-----IEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGS 67

Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
           ER  L++   +      ++   +            H   LGS +G GI R+KIGDI+++ 
Sbjct: 68  ERNILALFSRDFEEYAENLTYPIKTILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVK- 126

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRV 249
           E  A   V  E+A Y++T+++K+G   V C+ +    ++ +   +   K I    ASLR 
Sbjct: 127 ENSALVFVKDEVATYIVTNIDKIGKEKVKCSIVRDNEVDIKYFFSNEGKRITYTVASLRA 186

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NS 308
           D++ S GF +SR +  +LI    V VNW  + K    ++ GD++SV   GR+KI ++   
Sbjct: 187 DSVISHGFGISREEAADLIRQMKVAVNWIYIDKPSYPIKEGDLISVRHHGRLKIDKVLTQ 246

Query: 309 TRKGKFAVELIQY 321
           T+KG+ ++E++++
Sbjct: 247 TKKGRISIEVLRF 259


>gi|104773831|ref|YP_618811.1| RNA binding protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422912|emb|CAI97574.1| Putative RNA binding protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 265

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 9/222 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            V V     PL  +LE E   ++    + +S+R+DA+ +A    SRS++   +  G+VR+
Sbjct: 156 PVKVRLEEKPLKDSLEAED-NSEIISAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           NW    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 215 NWHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|313123447|ref|YP_004033706.1| cell division protein, s4-like domain [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280010|gb|ADQ60729.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 265

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGEEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V     PL         ++    + +S+R+DA+ +A    SRS++   +  G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           W    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|157413918|ref|YP_001484784.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
 gi|157388493|gb|ABV51198.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
          Length = 263

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 135/260 (51%), Gaps = 9/260 (3%)

Query: 69  LKGVG-DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LKG+  + N  +E + ++ +A  A    E   + F +  V +E +   E L D K    G
Sbjct: 4   LKGILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIHG 63

Query: 128 GYPQAERCRLSVGHPEALTSDPDIV------AALSITGNFGFQPCSHGDFLGSILGTGIA 181
           G+  ++R +++    + +  + D++        +   GNF F   +  DF   ++  G+ 
Sbjct: 64  GFSSSQRSKIACFRGDNI-PEEDVLKNNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVN 122

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF- 240
           + K+GDI   G++GAQ ++     ++L   +  + +V V    + +  L     RTK   
Sbjct: 123 KVKVGDIWTIGDRGAQGIIDNLDIEHLDEKIFYLRDVEVKINLVGIDELLIPAGRTKKLV 182

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
            T+EAS R+DA+ASAGF++SR K++  I NG +++N + V K    L+ GD + +  KG 
Sbjct: 183 NTVEASTRLDAIASAGFRISRKKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENKGF 242

Query: 301 IKIGEINSTRKGKFAVELIQ 320
           I+I  +  T++ ++ V+L++
Sbjct: 243 IEIINLEITKRERWKVKLLR 262


>gi|385815458|ref|YP_005851849.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
 gi|325125495|gb|ADY84825.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 265

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V     PL         ++    + +S+R+DA  +A    SRS++   +  G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIISAVASSMRLDAFLAALSNKSRSQVKEALEAGEVRLN 215

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           W    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|116513838|ref|YP_812744.1| cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|418029212|ref|ZP_12667760.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1632]
 gi|116093153|gb|ABJ58306.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|354690930|gb|EHE90872.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1632]
          Length = 265

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V     PL         ++    + +S+R+DA+ +A    SRS++   +  G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIISAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           W    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|422845429|ref|ZP_16892139.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
 gi|325684357|gb|EGD26526.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 265

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGEEAIMQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V     PL         ++    + +S+R+DA+ +A    SRS++   +  G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           W    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|410657330|ref|YP_006909701.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
 gi|410660368|ref|YP_006912739.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
 gi|409019685|gb|AFV01716.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
 gi|409022724|gb|AFV04754.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
          Length = 267

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 7/202 (3%)

Query: 127 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGIA 181
           GGY  AER  L        PE +  D +      I   +      SH DFLGS++G GI 
Sbjct: 67  GGYEGAERTVLVFLPDYLEPEQVIQDDEYCPLAFIRAEYPADSGLSHRDFLGSLMGAGIK 126

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
           RE +GDI++ GE     +V+ E+  +LI +LE VG V +    IP   L+    +    K
Sbjct: 127 RETVGDILV-GENSTDLIVLKEILPFLINNLESVGRVKIKTAIIPAGLLQIPEEKVLLLK 185

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
              ASLR+D++ +AGF LSR+K    + +G V +N     K   T+  GD +S+ G G+I
Sbjct: 186 DTVASLRLDSVVAAGFNLSRTKAGEYVESGKVMLNSLECDKTDKTVAEGDTLSLRGFGKI 245

Query: 302 KIGEINS-TRKGKFAVELIQYL 322
           K+ EI   ++KG+ ++ + +Y+
Sbjct: 246 KLQEIGGLSKKGRQSIVIKKYV 267


>gi|403386619|ref|ZP_10928676.1| RNA-binding protein [Clostridium sp. JC122]
          Length = 258

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 91  ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 150
           A    +V++S F     +   + ++EK  D K    G + + ER  +S+   E  +  P 
Sbjct: 29  AEKTNKVVYSRFFIYKGIYNKLKSMEKSIDAKIYCNGIFDECERVMISISSYEIPSYYP- 87

Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
            +  L I     F+  SH D+LGSI+  GI RE +GD+I+Q +  A   VV E+ D+LI 
Sbjct: 88  -MVLLKIVNKSKFKNLSHKDYLGSIMAQGIKRELLGDLIVQ-DNSAYVPVVEEIVDFLIL 145

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNL 267
           +L  +G     C  I L       P+  +F+    I  SLR+D + S+   +SRSK ++L
Sbjct: 146 NLNSIG--KCPCEVIELQDNVLNIPKI-NFEEKIVIVTSLRLDNIISSICNISRSKALDL 202

Query: 268 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 321
           I  G V +N+   TK    +   DIV++   G+ K+GE I  T   +F + + +Y
Sbjct: 203 IQCGKVLINYAEETKKDKIIIKEDIVTIRTYGKFKVGEVIGKTNSDRFKISIKKY 257


>gi|339634154|ref|YP_004725795.1| RNA-binding S4 domain-containing protein [Weissella koreensis KACC
           15510]
 gi|338853950|gb|AEJ23116.1| RNA-binding S4 domain-containing protein [Weissella koreensis KACC
           15510]
          Length = 263

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVG 140
           + R+A      + ++FL P         LE L     ++K    GGY  AE  R  L   
Sbjct: 23  LLRQAHDEYRPILTNFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
           + +   +D D+   + I     F    H D LG+++ +G+ R +IGDII   +K  Q +V
Sbjct: 79  YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDIITDEQKNWQIIV 137

Query: 201 VPELADYLITS--LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
              +A ++  S  LE++G V V    + +  + +        +T+ ASLR+D + + G+ 
Sbjct: 138 TNPIAQFVQQSPDLERIGRVKVRYLEVDIRDVLHPLQDYLLEETLAASLRLDIIVANGYN 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 317
           +SRSK   LI +G V++NWT + +    +   D++SV   GR+KI EIN  T+K K+ + 
Sbjct: 198 ISRSKAKELIEHGSVKINWTVMDRPDEVVAINDLISVRRYGRLKITEINGQTKKDKWRIS 257

Query: 318 L 318
           L
Sbjct: 258 L 258


>gi|239826539|ref|YP_002949163.1| RNA-binding S4 domain-containing protein [Geobacillus sp. WCH70]
 gi|239806832|gb|ACS23897.1| RNA-binding S4 domain protein [Geobacillus sp. WCH70]
          Length = 257

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P   +     + +  +V+    GG P  ER R  +  P    +D D  +A   + 
Sbjct: 34  TDFLDPREQQIVQSVIGRDEEVRIAFFGGAPFVERKRALLFPPYFQPADEDYEIALFEVH 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H   LG+++  G+ R K GDI+++ E+  QFL   E+ADY+   L  +G  
Sbjct: 94  YPSKFISLEHRQVLGALMSLGLRRGKFGDILMKEER-VQFLAANEVADYIRLHLHAIGKA 152

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +VS  + PL  +     + +      +SLR+DA+ S  F +SR K+ + I NG V+VNW 
Sbjct: 153 NVSVEKRPLTEIITLEEKWQDTTITASSLRLDAILSQAFHVSRQKIQSFIENGFVKVNWK 212

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
            V +     + GDI+S  G GR KI  I   T+K K+ + +
Sbjct: 213 IVEQAHFECQQGDILSARGFGRCKIISIEGKTKKEKWRIRI 253


>gi|159903952|ref|YP_001551296.1| hypothetical protein P9211_14111 [Prochlorococcus marinus str. MIT
           9211]
 gi|159889128|gb|ABX09342.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9211]
          Length = 262

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 128/256 (50%), Gaps = 7/256 (2%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           DL+K    KNA E ++ ++ +  +A    + L S F+   +++E +   + + ++   A 
Sbjct: 7   DLIKR--SKNA-ETLERLISLGEKAHKTWQELWSPFVEAQLIEEILKIFDPIHEINCHAD 63

Query: 127 GGYPQAERCRL---SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           GGY  AER R+        E        ++ + I GNF F      DF  ++   GI+  
Sbjct: 64  GGYLGAERKRILFRRTHEGEKKIFPKPTLSGMQIEGNFLFDKTRIQDFKEALEEKGISPS 123

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKT 242
            +GDI + G++GAQ +   E    L      +  VS+    + +  L     R  K   T
Sbjct: 124 DLGDIWIVGDRGAQLICTREAGLLLNKQNGLIREVSIKYELLDINQLRLPSKRMPKKITT 183

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           IEAS R+D+++SAGF LSR+K+V  I  G +R+NWT   +    +++GD + + GKG + 
Sbjct: 184 IEASTRLDSISSAGFGLSRAKIVTEIKAGRIRLNWTRANQPFKDVKSGDRIHLEGKGSLL 243

Query: 303 IGEINSTRKGKFAVEL 318
           I  I  T++ ++ V L
Sbjct: 244 IQNIEPTKRARWRVVL 259


>gi|373494493|ref|ZP_09585096.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
 gi|371968423|gb|EHO85882.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
          Length = 253

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 8/238 (3%)

Query: 91  ASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLSVGHPEALT-- 146
           AS +  + +SDFL P     +   +      DV  V  GGY  AER  +    P+ ++  
Sbjct: 18  ASEKYMLTYSDFLDPHEHSAASNYIRGKGRFDVDIVFFGGYEDAERV-IMFCLPDYISIN 76

Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
            +  D++  + +    G +   HGD+LGS+ G G++R KIGDI++  E GA  +V  E+ 
Sbjct: 77  DASNDVLKVIRVRTKEGGKALRHGDYLGSLTGLGVSRGKIGDILVN-EDGADIIVSSEIV 135

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           ++L+T+  K G   +S +   L  L+       + K   ASLR+D + S+ F LSR+K  
Sbjct: 136 EFLMTNYAKAGRNYLSLSEHELSELKLPGNSRLTVKDTVASLRLDNIVSSAFGLSRAKAQ 195

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
             I  G V VN    TK    +  GD + + GKG++ + EI N TRK +  +E  +Y+
Sbjct: 196 EAIKRGIVFVNSLEQTKTDVQIDEGDKIVLRGKGKVLVKEIGNRTRKDRIFMEFERYV 253


>gi|332686279|ref|YP_004456053.1| hypothetical protein MPTP_0778 [Melissococcus plutonius ATCC 35311]
 gi|379727687|ref|YP_005319872.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
 gi|332370288|dbj|BAK21244.1| hypothetical protein, contains S4-like RNA binding domain
           [Melissococcus plutonius ATCC 35311]
 gi|376318590|dbj|BAL62377.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
          Length = 256

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 93  SRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           S+ E+ +S +LT  +       LE L     D+     GGY  AER R  +       S+
Sbjct: 21  SKVELYYSPYLTNFLDPRQAYILETLVHQNNDLLYKFYGGYENAERQRCMIYPSYYQPSE 80

Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
            D  ++ + IT    F   SHG  LG+++  GI RE  GDII  G K  Q  +  E+  Y
Sbjct: 81  EDFKISLVEITYPIKFATLSHGKILGTLVNMGIKREYFGDIISNGTK-WQIFIGNEIESY 139

Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLV 265
           +I  L+++G  SV  ++      E   P+    + I+  +SLR+D L SA + +SR    
Sbjct: 140 IINQLDRIGKTSVYLSKKE--DTELIVPKDNWIQEIDTVSSLRLDNLISAVYNISRQHSK 197

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
            LI +G V+VNW         +   DI+S+ G GRI++  I N T+KGK+ + L
Sbjct: 198 KLIESGKVKVNWMENGHPDFIIGLQDIISIRGYGRIQLQAIENKTKKGKYRINL 251


>gi|332708243|ref|ZP_08428225.1| uncharacterized S4-like domain protein [Moorea producens 3L]
 gi|332352967|gb|EGJ32525.1| uncharacterized S4-like domain protein [Moorea producens 3L]
          Length = 182

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 78/104 (75%)

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +V   RI L  L+ + P+ K   T EAS+R+DA+ASAGF +SRSK+V+ I+ GDVRVNW 
Sbjct: 79  TVKTQRIDLSELKVKEPKKKLRTTTEASMRLDAIASAGFGMSRSKMVDFITTGDVRVNWK 138

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322
            V ++  T+++GD++++ GKGR+++G+++ T+K ++ VEL +Y+
Sbjct: 139 EVKQSSYTVKSGDLIAIRGKGRLEVGDVSITKKQRYRVELTRYI 182


>gi|317129283|ref|YP_004095565.1| RNA-binding S4 domain-containing protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474231|gb|ADU30834.1| RNA-binding S4 domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 257

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 15/242 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CR 136
           V  ++E    A  +     +DFL P    + +S++   +  +V     GGY +AER  C 
Sbjct: 15  VDQVMEWKETAIEQYRSKLTDFLDPRQQYIVQSLVG--QNDEVAVSFYGGYKEAERKRCL 72

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           +   + E +T D DI A   +     F    H + LG+++  G+ REK GDI+   E+  
Sbjct: 73  IYPHYVEPVTEDYDI-ALYELLYPTKFVQIEHREILGALMNVGLKREKFGDILNSAER-F 130

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALA 253
           Q ++  E+A+++  +L+ VG   VS   +P+   E     TK +  +    +SLR+D + 
Sbjct: 131 QIVLAKEVAEFVSWNLKSVGKARVSLQVVPI---EESISVTKEYSYLHITASSLRLDTIV 187

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKG 312
           +  +KLSRSK+  +I NG ++VNW  +     +L+  D++SV GKGR +I      T+K 
Sbjct: 188 AEVYKLSRSKVKPMIENGYIKVNWKVIEDPSFSLQIKDVLSVRGKGRCEIVSNEGQTKKN 247

Query: 313 KF 314
           KF
Sbjct: 248 KF 249


>gi|421731791|ref|ZP_16170914.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
           plantarum M27]
 gi|407074004|gb|EKE46994.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
           plantarum M27]
          Length = 256

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
           +  +LE  +    +  +  +DFL P   +E ++    + D   +A  GGY +AER R ++
Sbjct: 16  IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71

Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
            +PE +  + D   + A  +     F    H   LGS++G G+ R+K GD+I   E+  Q
Sbjct: 72  LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQ 130

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V  E+AD++ T L K G   V   +I L AL       +      +SLR+DA+ ++  
Sbjct: 131 LIVSAEIADFVSTQLTKAGKAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMS 190

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           + SR K   L+ NG V+VNW  +      +  GD++S+ G GR  + +++  T+K K+ V
Sbjct: 191 RQSRQKAQALVKNGLVKVNWKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250


>gi|377831350|ref|ZP_09814327.1| S4 domain protein [Lactobacillus mucosae LM1]
 gi|377554777|gb|EHT16479.1| S4 domain protein [Lactobacillus mucosae LM1]
          Length = 262

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RC 135
           I +V+  L MA  A   R +L +DFL P  +  +     +  DVK  A GG+  AE  R 
Sbjct: 19  IAQVEDWLNMA--ADQYRPIL-TDFLNPRQVYIAQTLTNRRDDVKMRANGGWEHAEMQRV 75

Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
                + E   +D ++   + I     F    H   LG+++GTG+ R   GD++ +G + 
Sbjct: 76  LFYPSYYEPQQTDFEL-QLIEIDYPTKFTELHHRQILGTLIGTGLVRSSFGDVLNEGMRW 134

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V   L DYL   + ++G + V    +    +       ++     +S+R+DA+ +A
Sbjct: 135 -QVVVSRSLTDYLRQQVGQIGKIHVKMKPVEPEMIVTPQEDWETMTDTVSSMRLDAVIAA 193

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
           GF  SR++   LI +GD RVNW T  +    L   D++SV   GRI+I EI  +TRK K 
Sbjct: 194 GFNYSRNRAKQLIEHGDARVNWETEMRPDYPLVAHDLLSVRHAGRIRIDEIQGTTRKNKI 253

Query: 315 AVEL 318
            V +
Sbjct: 254 RVAM 257


>gi|254525647|ref|ZP_05137699.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537071|gb|EEE39524.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 263

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 132/259 (50%), Gaps = 7/259 (2%)

Query: 69  LKGVG-DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
           LKG+  + N  +E + ++ +A  A    E   + F +  V +E +   E L D K    G
Sbjct: 4   LKGILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIYG 63

Query: 128 GYPQAERCRLSVGHPEALTSDPDI-----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           G+  ++R +++    + +  +  +        +   GNF F   +  DF   ++  G+ +
Sbjct: 64  GFSSSQRSKIACFRRDNIPEEDMLKSNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVNK 123

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-K 241
            K+GDI   G++GAQ ++     + L      + +V V    + +  L     RTK    
Sbjct: 124 VKVGDIWTIGDRGAQGIIDNLDIENLDEKNFYLRDVKVKINLVGIDELLIPAGRTKKLVN 183

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
           T+EAS R+DA+ASAGF++SR K++  I NG +++N + V K+   L+ GD + +  KG I
Sbjct: 184 TVEASTRLDAIASAGFRISRKKIIERIENGMLKLNGSKVNKSTINLKVGDKLELENKGFI 243

Query: 302 KIGEINSTRKGKFAVELIQ 320
           +I  +  T++ ++ V+L++
Sbjct: 244 EIINLEITKRERWKVKLLR 262


>gi|258508284|ref|YP_003171035.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           GG]
 gi|385827956|ref|YP_005865728.1| cell division protein [Lactobacillus rhamnosus GG]
 gi|257148211|emb|CAR87184.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus GG]
 gi|259649601|dbj|BAI41763.1| cell division protein [Lactobacillus rhamnosus GG]
          Length = 259

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 5/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + H  E+   A +    + +DF  P     +   +    D+K V  GGYP AER RL + 
Sbjct: 16  IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
            P+   + P D  +  L +     F    H    G++L  G+ R+  GDI+  G +  QF
Sbjct: 75  APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDG-RTWQF 133

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V   + D++++++ K+G V V  T  PL A        +S     ++LR+DA+ + GF 
Sbjct: 134 FVAAHMEDWVMSNITKIGRVGVHFTDYPLAAAVTPENDWESISFSVSALRLDAIVAHGFN 193

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
           +SR +   LI  G VR+N+         + T DI+SV G GR+++  I   ++KGK  V
Sbjct: 194 MSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDIISVRGFGRLRLDAILGESKKGKLRV 252


>gi|300811330|ref|ZP_07091827.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497694|gb|EFK32719.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 265

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V     PL         ++    + +S+R+DA+ +A     RS++   +  G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKPRSQVKEALEAGEVRLN 215

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           W    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|81428368|ref|YP_395368.1| hypothetical protein LSA0754 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610010|emb|CAI55058.1| Hypothetical protein LCA_0754 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 262

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +L+   +A++    + +DFL P         + +  ++K    GGY  AER R  + 
Sbjct: 19  VAQVLDWIEQATTEYRAILTDFLDPRQAYILQTLIGEKGELKYHFSGGYNAAERQRALIA 78

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
                  + D  +    I     F   SHG  LG+++  GI R   GDI+  G++  QF 
Sbjct: 79  PTYFEPEEADFEIQLFEIRYPIKFAQLSHGKILGTLVNAGIDRNVFGDIMTDGQRW-QFF 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDAL 252
           V  ++ADY+++ + K+G V+V           IP  A ++E       + + +S R+D +
Sbjct: 138 VTTKMADYVVSQITKIGKVTVHLEEQAYTELIIPKDAWQFE-------QLLVSSFRLDTI 190

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRK 311
            +A + +SR +   L+    V++NW    K    L   DI+SV G GRI++  I+  TRK
Sbjct: 191 IAAVYNMSRQRAKELVQGNKVKLNWQAFDKPDFELDLLDIISVRGYGRIQLKSIDGQTRK 250

Query: 312 GKFAVEL 318
            K+ V L
Sbjct: 251 EKYRVTL 257


>gi|152976258|ref|YP_001375775.1| RNA-binding S4 domain-containing protein [Bacillus cytotoxicus NVH
           391-98]
 gi|152025010|gb|ABS22780.1| RNA-binding S4 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 257

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  R      +V  +DFL P   +     + +  DV     G  P+AER R ++ 
Sbjct: 15  VDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKR-ALI 73

Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+  AL  +   V  L I     F    H   LG+++  G+ REK GDI +Q E   Q 
Sbjct: 74  YPDYLALNEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQ-ENRVQI 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G   VS   +     L+ +    + F T+ +SLR+D + +   
Sbjct: 133 VVAKEVVSYIEMNLQSIGKTKVSLFSVSAENVLQLQDEWREQFGTV-SSLRLDVVLAEIL 191

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
            LSR K+  LI NG V+VNW  V +       GDI+SV G GR K+  ++  T+K K+ V
Sbjct: 192 HLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSVDGRTKKDKWRV 251


>gi|153810900|ref|ZP_01963568.1| hypothetical protein RUMOBE_01284 [Ruminococcus obeum ATCC 29174]
 gi|149833296|gb|EDM88378.1| S4 domain protein [Ruminococcus obeum ATCC 29174]
          Length = 206

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 11/201 (5%)

Query: 127 GGYPQAERCRLSVGHPEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           GGY QAER ++   HP+AL          + A  +   F  +  +H DFLG++L  GI R
Sbjct: 10  GGYEQAER-QMVAFHPDALLFPWKYPIKCLKAEPLAAKFS-EDLTHRDFLGAVLNLGIER 67

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFK 241
             IGDI++Q +  A      ++ADY+I +L +V + ++  + +    LE+ P P  +   
Sbjct: 68  AVIGDILVQ-KHTAWIFCHEKIADYIIENLTRVRHTTMKLSMVD--NLEHIPEPEFQEIN 124

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
              AS+R+DAL    F+ SR+ +V  I  G V VN   +T NG   + GDI+SV GKGR 
Sbjct: 125 GTCASVRLDALIGLAFQTSRNSMVPFIEGGQVFVNGKLITSNGYEPKDGDIISVRGKGRF 184

Query: 302 KI-GEINSTRKGKFAVELIQY 321
           +  G    T+KG+ +V+L++Y
Sbjct: 185 RYEGVSRQTKKGRNSVKLLRY 205


>gi|451347090|ref|YP_007445721.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
 gi|452855488|ref|YP_007497171.1| factor involved in shape determination,RNA-binding fold [Bacillus
           amyloliquefaciens subsp. plantarum UCMB5036]
 gi|449850848|gb|AGF27840.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
 gi|452079748|emb|CCP21505.1| factor involved in shape determination,RNA-binding fold [Bacillus
           amyloliquefaciens subsp. plantarum UCMB5036]
          Length = 256

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
           +  +LE  +    +  +  +DFL P   +E ++    + D   +A  GGY +AER R ++
Sbjct: 16  IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71

Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
            +PE +  + D   + A  +     F    H   LGS++G G+ R+K GD+I   E+  Q
Sbjct: 72  LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQ 130

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V  E+AD++ T L K G   V   +I L AL       +      +SLR+DA+ ++  
Sbjct: 131 LIVSGEIADFVSTQLTKAGKAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMS 190

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           + SR K   L+ NG V+VNW  +      +  GD++S+ G GR  + +++  T+K K+ V
Sbjct: 191 RQSRQKAQALVKNGLVKVNWKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250


>gi|225567966|ref|ZP_03776991.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
           15053]
 gi|225163254|gb|EEG75873.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
           15053]
          Length = 251

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 9/246 (3%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K + E++  A +R  V  SDFL    L       + +        GGY  +ER  ++   
Sbjct: 10  KRLAELSDLAFTRGIVTFSDFLNLNELNILHTTPKHMFPAHYETYGGYDLSERQMVAF-L 68

Query: 142 PEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           P+AL    T    ++    ++  F  +  +H D+LG+++  GI R K+GDII  G  GA 
Sbjct: 69  PDALYYEYTYPLSVIEVAPVSRKFA-EELTHRDYLGALMNLGIERSKLGDII-AGSFGAF 126

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
             V  ELA Y+   L ++ + +V   + P     YEP + +  K    S+R+D + S  +
Sbjct: 127 LFVKEELAAYITGELTRIRHTAVQAVQRPAAEFTYEP-KYEEMKGTVPSVRLDTVLSVAW 185

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAV 316
            LSRSKL   I  G V VN   +T NG  L+  D +SV G GR+   G ++ T+KG++ +
Sbjct: 186 PLSRSKLTAYIEGGKVFVNGKLITSNGYHLKESDRISVRGMGRLTYEGILSQTKKGRYMI 245

Query: 317 ELIQYL 322
            + +Y+
Sbjct: 246 SVHKYI 251


>gi|375362185|ref|YP_005130224.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
           subsp. plantarum CAU B946]
 gi|371568179|emb|CCF05029.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
           subsp. plantarum CAU B946]
          Length = 256

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
           +  +LE  +    +  +  +DFL P   +E ++    + D   +A  GGY +AER R ++
Sbjct: 16  IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71

Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
            +PE +  + D   + A  +     F    H   LGS++G G+ R+K GD+I   E+  Q
Sbjct: 72  LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGVGLKRQKYGDLIF-SEEAVQ 130

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V  E+AD++ T L K G   V   +I L AL       +      +SLR+DA+ ++  
Sbjct: 131 LIVSGEIADFVSTQLTKAGKAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMS 190

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           + SR K   L+ NG V+VNW  +      +  GD++S+ G GR  + +++  T+K K+ V
Sbjct: 191 RQSRQKAQALVKNGLVKVNWKAIEDPSFQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250


>gi|336434971|ref|ZP_08614689.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
           1_4_56FAA]
 gi|336001864|gb|EGN31991.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
           1_4_56FAA]
          Length = 259

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 128/258 (49%), Gaps = 25/258 (9%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRL 137
           K +LE++R A  R  + +SDFL P      +  L  L      +Q    GGY  AER ++
Sbjct: 10  KRLLELSRLAYHRDIITYSDFLNP----NELHILHSLPKDSLYSQYRVFGGYELAER-QM 64

Query: 138 SVGHPEALTSD---------PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKI 185
               P+AL+           PD +  L I      +  +  +H D+LG++L  GI R K 
Sbjct: 65  VAFLPDALSLRTENLQELFFPDEMCVLRIEPLHKKYA-EELTHRDYLGAMLNLGIDRSKT 123

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI++  E GA   V P++ ++L   L ++ + +V  T        Y  PR +  +   A
Sbjct: 124 GDILV-NESGALVFVRPQMKEFLREELTRIRHTTVLVTEEQPETFHY-TPRFEEIRGTVA 181

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IG 304
           S+R+D+L S  F  SR+KL  LI    V VN   VT NG  +   DI+SV G G+ + I 
Sbjct: 182 SIRLDSLLSLAFGSSRNKLSGLIEGAKVFVNGKLVTSNGYQVHENDIISVRGMGKFRFIS 241

Query: 305 EINSTRKGKFAVELIQYL 322
           E+  T+K + +V + +Y+
Sbjct: 242 ELAVTKKKRISVLIHKYI 259


>gi|375089438|ref|ZP_09735764.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
           37842]
 gi|374566836|gb|EHR38070.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
           37842]
          Length = 260

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 119/243 (48%), Gaps = 9/243 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP---VLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           V  + +   +ASS    + + FLTP    ++K+ +   E   D++    GGYP AER R 
Sbjct: 17  VDQVFDWLTQASSLYSPVLTPFLTPREGLIVKQIVNGYE---DLQVELTGGYPSAERQRA 73

Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +          D  +A + I     F   +H   LGS++ TGI R+++GDI+  G+   
Sbjct: 74  LIYPLYYQVQLEDFSLAYMQIHYPHKFGELTHQQILGSVMATGIKRDRLGDIMTDGQT-W 132

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V   LA YLI  L K+G + V   +I    L       +    I  SLRVD++ S  
Sbjct: 133 QIIVDTHLATYLINHLSKIGRMGVQVKQINPEELVDSVEEWEDLPLITGSLRVDSVVSKV 192

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
           + LSR +    I +G V+VN+T + K  T L   D+VS+   GR ++  I   TRK K+ 
Sbjct: 193 YNLSRQRAKEAIQSGQVKVNYTPIDKVDTVLAMSDLVSLRKYGRFRLEGIEGMTRKDKYR 252

Query: 316 VEL 318
           + +
Sbjct: 253 INV 255


>gi|308173503|ref|YP_003920208.1| shape determination protein [Bacillus amyloliquefaciens DSM 7]
 gi|384159478|ref|YP_005541551.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus amyloliquefaciens TA208]
 gi|384164087|ref|YP_005545466.1| hypothetical protein LL3_01698 [Bacillus amyloliquefaciens LL3]
 gi|384168525|ref|YP_005549903.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
 gi|307606367|emb|CBI42738.1| factor involved in shape determination, RNA-binding fold [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553566|gb|AEB24058.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus amyloliquefaciens TA208]
 gi|328911642|gb|AEB63238.1| factor involved in shape determination, RNA-binding fold [Bacillus
           amyloliquefaciens LL3]
 gi|341827804|gb|AEK89055.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
          Length = 256

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
           +  +LE  +    +  +  +DFL P   +E ++    + D   +A  GGY +AER R ++
Sbjct: 16  IDQVLEWKQIVQDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71

Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
            +PE +  + D   + A  +     F    H   LGS++G G+ R+K GD+I   E+  Q
Sbjct: 72  LYPEYMEPEQDDFELRAFEVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQ 130

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V  E+AD++ T L K G   V   +I L AL       +  +   +SLR+DA+ +   
Sbjct: 131 LIVSGEIADFVGTQLTKAGKAPVKLEKIELSALHIPASDVEIREDTVSSLRLDAVCALMS 190

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +++  T+K K+ V
Sbjct: 191 RQSRQKAQALVKNGLVKVNWKAVEDPSYQVAEGDMLSIRGFGRCSLTKVDGKTKKDKWKV 250


>gi|417998984|ref|ZP_12639197.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           T71499]
 gi|410539924|gb|EKQ14446.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           T71499]
          Length = 259

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            + G+  A   D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPGYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|334127576|ref|ZP_08501488.1| S4 domain protein [Centipeda periodontii DSM 2778]
 gi|333389530|gb|EGK60695.1| S4 domain protein [Centipeda periodontii DSM 2778]
          Length = 264

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 3/199 (1%)

Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
            GGY  AER R  + H + A T D   +A +    N  F   +H D LG+++G GI RE 
Sbjct: 67  NGGYAGAERQRAMLRHRDFAGTPDGFGIACVEAAWNGQFARLTHRDVLGAVMGLGIEREL 126

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           IGDI L     A+ +   ++A ++I +L  +G V V      +  +     RTK  +   
Sbjct: 127 IGDI-LPAADTAKIICDVKIAAFIIQNLTMIGAVGVKVQLSDVTEIAPREERTKEIRATV 185

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           ASLR+D++ +AGF +SRS+  + I+   V++NW +      T+  GD++S+ G+GR+++ 
Sbjct: 186 ASLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSTGSASKTINEGDVLSMRGRGRVEVT 245

Query: 305 EI-NSTRKGKFAVELIQYL 322
            +   T+KG+  V L ++ 
Sbjct: 246 AVCGQTKKGRTVVVLKRFF 264


>gi|418004991|ref|ZP_12644992.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           UW1]
 gi|410548119|gb|EKQ22335.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           UW1]
          Length = 259

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 15/244 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRL 137
           + H  E+   A +    + +DF  P   ++ ++A+  ++   D+K V  GGYP AER R+
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDP---RQRLIAISLVSADDDIKLVHFGGYPHAERQRI 72

Query: 138 --SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
             +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+  
Sbjct: 73  IFAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW 131

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALA 253
            QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + 
Sbjct: 132 -QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLT--DYVTPENDWEPLNFSVSALRLDTVV 188

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKG 312
           + GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KG
Sbjct: 189 AHGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKG 248

Query: 313 KFAV 316
           K  V
Sbjct: 249 KLRV 252


>gi|418035959|ref|ZP_12674397.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1519]
 gi|354689118|gb|EHE89130.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
           subsp. bulgaricus CNCM I-1519]
          Length = 265

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P         +E +A  +A+ Q  GGY +AE+CRL +    E L  D   V    
Sbjct: 40  TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F    H   LGS+  +G+  +  GDII  G+   QF    ELA +  + ++++G
Sbjct: 96  IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            V V      L         ++    + +S+R+DA+ +A    SRS++   +  G+VR+N
Sbjct: 156 PVKVRLEEKALKDRLEAEDNSEIISAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 317
           W    K  + L+ GDI+S+   GR+K+  +  ++KG+  VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256


>gi|199598147|ref|ZP_03211569.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
           HN001]
 gi|229552082|ref|ZP_04440807.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
 gi|385835145|ref|YP_005872919.1| S4 domain-containing protein [Lactobacillus rhamnosus ATCC 8530]
 gi|418070509|ref|ZP_12707784.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           R0011]
 gi|421769069|ref|ZP_16205778.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           LRHMDP2]
 gi|421771332|ref|ZP_16207992.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           LRHMDP3]
 gi|423077664|ref|ZP_17066356.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
 gi|199590908|gb|EDY98992.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
           HN001]
 gi|229314515|gb|EEN80488.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
 gi|355394636|gb|AER64066.1| S4 domain protein [Lactobacillus rhamnosus ATCC 8530]
 gi|357539929|gb|EHJ23946.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           R0011]
 gi|357553378|gb|EHJ35128.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
 gi|411185465|gb|EKS52593.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           LRHMDP2]
 gi|411185918|gb|EKS53044.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           LRHMDP3]
          Length = 259

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 15/244 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + H  E+   A +    + +DF  P     +   +    D+K V  GGYP AER RL + 
Sbjct: 16  IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
            P+   + P D  +  L +     F    H    G++L  G+ R+  GDI+  G +  QF
Sbjct: 75  APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDG-RTWQF 133

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDALA 253
            V   + D++++++ K+G V V  T  PL A      ++EP    SF    ++LR+DA+ 
Sbjct: 134 FVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDWEPI---SFSV--SALRLDAIV 188

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKG 312
           + GF +SR +   LI  G VR+N+         + T DI+SV G GR+++  I   ++KG
Sbjct: 189 AHGFNMSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDIISVRGFGRLRLDAILGESKKG 248

Query: 313 KFAV 316
           K  V
Sbjct: 249 KLRV 252


>gi|366053398|ref|ZP_09451120.1| RNA-binding S4 domain-containing protein [Lactobacillus suebicus
           KCTC 3549]
          Length = 261

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSI 157
           F+ P     +   + +  DV  ++ GG+  AE  RL + +P      P+I    +  L +
Sbjct: 38  FMNPRQRYIAQTLVNRQDDVSILSNGGFSNAEMQRLLI-YPTYYQ--PEIEDFQIQVLDV 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LG+++  GI RE  GDII  G K  Q +V   L+DY+   ++K+ N
Sbjct: 95  KYPEKFAEIKHRQILGTLVSQGIERETFGDIITDGHKW-QVMVEANLSDYIRVQVDKIAN 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           + V    I L  +  +    +  +T  +SLR+DA+ ++ F  SR++   LI +G VR+NW
Sbjct: 154 IRVQLIPISLDDVISQISDAEEIQTTVSSLRLDAIIASSFNYSRNRSKELIEHGKVRLNW 213

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELI 319
             + K    +   D++SV   GRIK+ ++ N T+K K  V L+
Sbjct: 214 EDIDKPDYPVAIHDLISVRHGGRIKLTDVGNPTKKNKLHVSLL 256


>gi|415886495|ref|ZP_11548275.1| RNA-binding S4 domain protein [Bacillus methanolicus MGA3]
 gi|387587182|gb|EIJ79505.1| RNA-binding S4 domain protein [Bacillus methanolicus MGA3]
          Length = 257

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 4/154 (2%)

Query: 163 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 222
           F    H   LGS++  G+ R K GDI+++G+K  QF    E+ADY+   L+ +G  SV+ 
Sbjct: 98  FITIEHRQVLGSLMSLGLKRGKFGDILIEGDK-VQFFAGKEIADYVSLQLDSIGKASVTI 156

Query: 223 TRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 281
             IPL  A++     T+   T+ +SLR+DA+ SA + LSR K  NLI NG V+VNWT V 
Sbjct: 157 NEIPLENAIQITESWTEETSTV-SSLRLDAVISALYNLSRQKSQNLIQNGLVKVNWTLVE 215

Query: 282 KNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
                   GD++SV G GR KI  I   T+K K+
Sbjct: 216 NKSFECGEGDVISVRGYGRSKIFSIEGKTKKDKW 249


>gi|260587701|ref|ZP_05853614.1| RNA-binding S4 [Blautia hansenii DSM 20583]
 gi|331084008|ref|ZP_08333115.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541966|gb|EEX22535.1| RNA-binding S4 [Blautia hansenii DSM 20583]
 gi|330402370|gb|EGG81940.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 250

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAERCRLSV 139
           K +LE+++++  R  + +SDFL   + +++++     +D  V+ +  GGY  AER +++ 
Sbjct: 9   KRMLELSKKSYYRGILTYSDFL--DLNEQNILHSLSFSDTGVQVLLFGGYETAER-QMAA 65

Query: 140 GHPEALTSDPDI-VAALSITG-NFGFQPC-SHGDFLGSILGTGIAREKIGDIILQGEKGA 196
              +A     D  +A + I+  N  F    +H D+LGSIL  GI R KIGDI+++ E GA
Sbjct: 66  FVSDAFCCKEDYPIACIKISPLNRKFSDTLTHRDYLGSILNLGIERCKIGDILVE-EDGA 124

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
                  + D+LI  + ++ +  V   RI        P R +   T+ AS R+D++    
Sbjct: 125 FVFCHTSMVDFLIDEICRIKHTPVKAERITEENQLPTPKREEISGTV-ASPRLDSVIGLA 183

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
           F+ SRS +++ I +G V +N  +V  NG  L+ GDIVSV GKG+ +   + S T+K +  
Sbjct: 184 FRTSRSSMISYIESGKVFINGKSVVSNGYVLKEGDIVSVRGKGKFQFHSVTSKTKKNRSH 243

Query: 316 VELIQY 321
           V L +Y
Sbjct: 244 VILYKY 249


>gi|418010737|ref|ZP_12650508.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           Lc-10]
 gi|410553316|gb|EKQ27319.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           Lc-10]
          Length = 259

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYPQAER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPQAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KG+
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGR 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|289423170|ref|ZP_06424985.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156501|gb|EFD05151.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 260

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 122/248 (49%), Gaps = 14/248 (5%)

Query: 76  NAIEEVKHILEMARRASSRREVLHS------DFLTPPVLKESMMALEKLADVKAVAQGGY 129
           N I++ +  ++M R   S   VL S      +FL P  +K ++  L    D+K   +GGY
Sbjct: 8   NHIKDEELKVKMYRVIDSCNSVLKSHSIRSTEFLNPYEVKNAVAILNTEPDLKYKLEGGY 67

Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
             A R  + +       S+   +    ++GNF F+  SH D+LGSILG GI REK+GDI+
Sbjct: 68  DGAIRSVMLISQYYCDLSEESSIRCFQVSGNFKFKSVSHRDYLGSILGLGIKREKLGDIL 127

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF--KTIE-AS 246
           +  E   Q +V  ++ DY++ +LEKV    V+   I +  +    P    F  K I  AS
Sbjct: 128 VH-EDYCQIIVSSDMGDYVLYNLEKVARNRVTVKEIGICDI---IPVEDEFDIKNISVAS 183

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           LR+D + +  F LSR +    I    V V++  +      +    ++SV   G+  + EI
Sbjct: 184 LRLDGIIAGVFNLSRQEASKFIGAEYVSVDYEKIDNPSKQVEEKSVISVRKCGKFVLDEI 243

Query: 307 NS-TRKGK 313
              ++KGK
Sbjct: 244 GGVSKKGK 251


>gi|366086111|ref|ZP_09452596.1| RNA-binding S4 domain-containing protein [Lactobacillus zeae KCTC
           3804]
          Length = 259

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 19/246 (7%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           + H  E+   A +    + +DF  P   ++ +S+++     D+K +  GGYP AER RL 
Sbjct: 16  IDHFAELVETARTEYRAVLTDFTDPRQRLIADSLISAHD--DMKLMHFGGYPHAERQRLI 73

Query: 139 VGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
              P+   + PD   +  L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FA-PDYYEAQPDDFDIRLLQIVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIITDGQTW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDA 251
           QF V   + D++++++ K+G V V  T  PL        ++EP     F    ++LR+D 
Sbjct: 132 QFFVAAHMEDWVMSNITKIGRVGVHFTDYPLDQAVTPENDWEPI---DFSI--SALRLDT 186

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 310
           + + GF +SR +   LI  G VR+N+         + T DI+SV G GR+++  I   T+
Sbjct: 187 VVAHGFNMSRQRAKVLIQGGKVRLNFGENEAPDAEVATSDIISVRGFGRLRLDAILGETK 246

Query: 311 KGKFAV 316
           KGK  V
Sbjct: 247 KGKLRV 252


>gi|154685957|ref|YP_001421118.1| hypothetical protein RBAM_015240 [Bacillus amyloliquefaciens FZB42]
 gi|384265122|ref|YP_005420829.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
           subsp. plantarum YAU B9601-Y2]
 gi|387898117|ref|YP_006328413.1| hypothetical protein MUS_1688 [Bacillus amyloliquefaciens Y2]
 gi|394993877|ref|ZP_10386616.1| YlmH [Bacillus sp. 916]
 gi|429505092|ref|YP_007186276.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
           plantarum AS43.3]
 gi|154351808|gb|ABS73887.1| YlmH [Bacillus amyloliquefaciens FZB42]
 gi|380498475|emb|CCG49513.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
           subsp. plantarum YAU B9601-Y2]
 gi|387172227|gb|AFJ61688.1| conserved hypothetical protein YlmH [Bacillus amyloliquefaciens Y2]
 gi|393805201|gb|EJD66581.1| YlmH [Bacillus sp. 916]
 gi|429486682|gb|AFZ90606.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
           plantarum AS43.3]
          Length = 256

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 156
           +DFL P   +E ++    + D   +A  GGY +AER R ++ +PE +  + D   + A  
Sbjct: 35  TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +     F    H   LGS++G G+ R+K GD+I   E+  Q +V  E+AD++ T L K G
Sbjct: 91  VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVSTQLTKAG 149

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
              V   +I L AL       +      +SLR+DA+ ++  + SR K   L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           W  +      +  GD++S+ G GR  + +++  T+K K+ V
Sbjct: 210 WKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250


>gi|385264665|ref|ZP_10042752.1| S4 domain-containing protein [Bacillus sp. 5B6]
 gi|385149161|gb|EIF13098.1| S4 domain-containing protein [Bacillus sp. 5B6]
          Length = 256

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 156
           +DFL P   +E ++    + D   +A  GGY +AER R ++ +PE +  + D   + A  
Sbjct: 35  TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +     F    H   LGS++G G+ R+K GD+I   E+  Q +V  E+AD++ T L K G
Sbjct: 91  VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVRTQLTKAG 149

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
              V   +I L AL       +      +SLR+DA+ ++  + SR K   L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           W  +      +  GD++S+ G GR  + +++  T+K K+ V
Sbjct: 210 WKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250


>gi|258539498|ref|YP_003173997.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
           Lc 705]
 gi|257151174|emb|CAR90146.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus Lc 705]
          Length = 259

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 15/244 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + H  E+   A +    + +DF  P     +   +    D+K V  GGYP AER RL + 
Sbjct: 16  IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
            P+   + P D  +  L +     F    H    G++L  G+ R+  GDI+  G +  QF
Sbjct: 75  APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDG-RTWQF 133

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDALA 253
            V   + D++++++ K+G V V  T  PL A      ++EP    SF    ++LR+DA+ 
Sbjct: 134 FVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDWEPI---SFSV--SALRLDAIV 188

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKG 312
           + GF +SR +   LI  G VR+N+         + T DI+SV G GR+++  I   ++KG
Sbjct: 189 AHGFNMSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDIISVRGFGRLRLDAILGESKKG 248

Query: 313 KFAV 316
           K  +
Sbjct: 249 KLRI 252


>gi|387927110|ref|ZP_10129789.1| RNA-binding S4 domain protein [Bacillus methanolicus PB1]
 gi|387589254|gb|EIJ81574.1| RNA-binding S4 domain protein [Bacillus methanolicus PB1]
          Length = 257

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           +++ IE   H  E    A + R    +DFL P   +     + +  ++     GG   AE
Sbjct: 11  ERDFIERAIHWREFVETAFAPR---LTDFLDPREQQILKAVVGQSEEIHCHLFGGTGGAE 67

Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           R R +V  P+   +D +         N+   F    H   LGS++  G+ R K GDI+++
Sbjct: 68  RKR-AVICPDYYQADREDFEICLFEINYPKKFITIEHRQVLGSLMSLGLKRGKFGDILIE 126

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVD 250
           G+   QF    E+ADY+   L+ +G  SV+   IPL  A++ +    +   T+ +SLR+D
Sbjct: 127 GD-NVQFFAAKEIADYVSLQLDSIGKASVTICEIPLENAIQIKESWIEETSTV-SSLRLD 184

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-ST 309
           A+ SA + LSR K  +LI  G VRVNW  +  N      GD++S+ G GR KI  I   T
Sbjct: 185 AVISALYNLSRHKSQDLIKQGLVRVNWALIENNSFECGEGDVISIRGYGRSKILSIEGKT 244

Query: 310 RKGKF 314
           +K K+
Sbjct: 245 KKDKW 249


>gi|47570312|ref|ZP_00240959.1| S4 domain protein [Bacillus cereus G9241]
 gi|47553021|gb|EAL11425.1| S4 domain protein [Bacillus cereus G9241]
          Length = 255

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+  LI NG V+VNW TV +      TGD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPLIKNGLVKVNWKTVEQTSYECYTGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|257870264|ref|ZP_05649917.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
 gi|357050529|ref|ZP_09111727.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
           30_1]
 gi|257804428|gb|EEV33250.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
 gi|355381182|gb|EHG28309.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
           30_1]
          Length = 260

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 8/216 (3%)

Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 155
           +DFL P    + ES+  + +  D+     GGY  AER  C +   + +  + + D+V   
Sbjct: 36  TDFLDPRQAYILESL--IRQSTDLSFQFFGGYEAAERRRCLIYPDYYQPASEEFDLVL-F 92

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           +I     F   SHG  LG+++GTG+ RE  GDII  GE   Q  V  E++ ++ T ++K+
Sbjct: 93  TIIYPKKFTVLSHGKVLGTLMGTGVKREYFGDIISDGE-NWQVFVASEISHFVQTQVDKI 151

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
           GNVSV         L          +   +SLR+D + SA + +SR +   LI +G V+V
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWSEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           NWT   +    L   DIVS+ G GRI+I  +  T K
Sbjct: 212 NWTETLRPDFMLDLLDIVSIRGFGRIQIQGLEGTTK 247


>gi|191638281|ref|YP_001987447.1| RNA-binding protein [Lactobacillus casei BL23]
 gi|385819986|ref|YP_005856373.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
           LC2W]
 gi|385823181|ref|YP_005859523.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
           BD-II]
 gi|409997144|ref|YP_006751545.1| RNA-binding protein ylmH [Lactobacillus casei W56]
 gi|190712583|emb|CAQ66589.1| YlmH (RNA-binding protein) [Lactobacillus casei BL23]
 gi|327382313|gb|AEA53789.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
           LC2W]
 gi|327385508|gb|AEA56982.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
           BD-II]
 gi|406358156|emb|CCK22426.1| Putative RNA-binding protein ylmH [Lactobacillus casei W56]
          Length = 259

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP+AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPNYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|210612739|ref|ZP_03289454.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
 gi|210151432|gb|EEA82440.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
          Length = 264

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 13/263 (4%)

Query: 67  DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAV 124
           D+   +  K  +   K ++E++R +  R  V +SDFL    L    +M   E     K  
Sbjct: 8   DIRTSIMQKEELMLQKRLIELSRLSYQRGIVTYSDFLNLNELNILHTMPKTELYTTYKVF 67

Query: 125 AQGGYPQAERCRLSVGHPEALTSDP----DIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
             GGY  +ER ++    P+A   +      ++    +   F  +  SH D+LG++L  GI
Sbjct: 68  --GGYDFSER-QMVAFLPDAFCYEYFYPISVLKIRPLQKKFS-EALSHRDYLGAVLNLGI 123

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
            R KIGDI++Q E  A   V   L  ++   L+++ + SV           Y P   +  
Sbjct: 124 ERSKIGDILVQ-EDSAILFVHQSLEQFIQDELKRIRHTSVMAEPENFEKFSYTPQIEEKK 182

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
            T+ +SLR+D+L +  F  SR+KLV  I NG V VN   +T NG  ++  DI+SV G GR
Sbjct: 183 GTV-SSLRLDSLLALAFSSSRTKLVPYIENGKVFVNGKLITSNGYQIKQDDIISVRGLGR 241

Query: 301 IKIGE-INSTRKGKFAVELIQYL 322
            +  E ++ T++G++ V +  Y+
Sbjct: 242 FQYKEMLSQTKRGRYLVTIHLYI 264


>gi|418007881|ref|ZP_12647753.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           UW4]
 gi|410547966|gb|EKQ22187.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           UW4]
          Length = 259

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKIVHFGGYPHAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|116494769|ref|YP_806503.1| cell division protein [Lactobacillus casei ATCC 334]
 gi|417983352|ref|ZP_12623990.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           21/1]
 gi|417992792|ref|ZP_12633144.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           CRF28]
 gi|417996141|ref|ZP_12636424.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           M36]
 gi|418001912|ref|ZP_12642040.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           UCD174]
 gi|418014870|ref|ZP_12654459.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           Lpc-37]
 gi|116104919|gb|ABJ70061.1| Cell division protein, S4-like domain [Lactobacillus casei ATCC
           334]
 gi|410528298|gb|EKQ03151.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           21/1]
 gi|410532583|gb|EKQ07285.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           CRF28]
 gi|410535850|gb|EKQ10460.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           M36]
 gi|410545357|gb|EKQ19657.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           UCD174]
 gi|410552692|gb|EKQ26707.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           Lpc-37]
          Length = 259

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|417989538|ref|ZP_12630042.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           A2-362]
 gi|410537925|gb|EKQ12487.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           A2-362]
          Length = 259

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A   D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATADDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|313888339|ref|ZP_07822010.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845742|gb|EFR33132.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 260

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 23/227 (10%)

Query: 100 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALS 156
           +DFL P  +  S+  L +  D +     GGY  +E   + + +P  +    D D+V    
Sbjct: 41  TDFLNPREINLSISILNRFKDNISYKVDGGYEDSESSIIYI-YPSYMYENEDDDLVLFKF 99

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
            T N       HGD LGSILG  I R KIGDI++ GEK   F V  E+A+++  +L KV 
Sbjct: 100 DTNN----KIKHGDILGSILGLSIDRGKIGDILI-GEKYTYFFVKREIANFVEINLTKVS 154

Query: 217 NVSVSCTR------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
             ++  +R      +P    +Y+       K I +S R+D L +  F LSRSK+  +I +
Sbjct: 155 RYNILLSREDDTSGLPKKEYDYK-------KIIVSSFRLDNLIAKVFNLSRSKVKEMIKS 207

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
             V+VN+   T++   L  GD+VS+   GR +I  I  +T+KG F +
Sbjct: 208 ELVKVNFAKETRSHLELELGDLVSLRHYGRFRIFNIEGNTKKGNFVL 254


>gi|291563464|emb|CBL42280.1| Uncharacterized conserved protein, contains S4-like domain
           [butyrate-producing bacterium SS3/4]
          Length = 251

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 82  KHILEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CR 136
           K I E+A  A SR   LH+DFLT     + ++M A   L  VK V  GG+P +ER   C 
Sbjct: 10  KRIQELAENAYSRDIPLHTDFLTLAEQTVFQNMSA--TLPPVKFVLSGGFPMSERKVLCF 67

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           L+  + E L + P +   +        +  +H D+LG+I+  GI R  IGDI+LQ +  A
Sbjct: 68  LA-SYEEELYAPPFVCLKIVPANRRFAEELTHRDYLGAIMNLGIERAMIGDIVLQ-DGNA 125

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
              V+ +++ YL  +L  + + SV  T I     E   P  +      +S+R+D++ +  
Sbjct: 126 WAFVMEKMSRYLAENLTMIRHTSV-VTEITADFSELPEPEMEEISGTVSSVRLDSVIALC 184

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFA 315
            +LSR++  + I +  V VN    T     LR G+I+S+ G G+ + GE  N T+KG+ +
Sbjct: 185 GRLSRTRAASYIEDEKVSVNGAVCTNVSLNLRGGEILSIRGIGKFRFGEPGNLTKKGRTS 244

Query: 316 VELIQY 321
           V + +Y
Sbjct: 245 VVVYRY 250


>gi|428279135|ref|YP_005560870.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
           BEST195]
 gi|291484092|dbj|BAI85167.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 257

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 14/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71

Query: 139 VGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
           + +PE +T  P++    + A ++     F    H   LG+++G G+ R+K GDI+   E 
Sbjct: 72  ILYPEYIT--PEVSDFELQAFNVCYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SET 128

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
             Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ +
Sbjct: 129 AVQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCA 188

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
           +  + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K
Sbjct: 189 SMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDK 248

Query: 314 FAV 316
           + V
Sbjct: 249 WRV 251


>gi|399923764|ref|ZP_10781122.1| RNA-binding cell division protein [Peptoniphilus rhinitidis 1-13]
          Length = 260

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 23/257 (8%)

Query: 78  IEEVKHILEMARRASSRREV------------LHSDFLTPPVLKESMMALEKLAD-VKAV 124
           I+ V HI  +  R S R+ +            + ++FL P  +  S+  L +  D +   
Sbjct: 7   IDLVNHINRVEDRTSIRQVIDKIESVINNHITISTNFLNPHEINLSISILNRFKDKISYE 66

Query: 125 AQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
             GGY  +E   + +        D D + AL    N   +   H D LG++L   I R K
Sbjct: 67  IDGGYEDSEASLIYIYPSYKYERDIDDIVALKFKSN---EKIKHSDVLGALLALSIDRRK 123

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE-PPRTKSFKTI 243
           IGDI++ G+K   F V  E+A+++  +L K+   +++ +R    A  Y+ P R   +K I
Sbjct: 124 IGDILI-GKKFTYFFVKREVANFVEINLTKISKYNINLSR---EAKPYDLPKREYYYKDI 179

Query: 244 EAS-LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
            AS  R+D L S  F LSR K   +I +  V+VN+   T+    L  GD+VS+   GR +
Sbjct: 180 VASSFRLDNLISKVFNLSRGKAKKMIDSELVKVNFVKETRPHFELECGDLVSLRNFGRFR 239

Query: 303 IGEIN-STRKGKFAVEL 318
           +  +  +TRKG F +E+
Sbjct: 240 VFNVRGNTRKGNFVIEV 256


>gi|429737653|ref|ZP_19271509.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
 gi|429152016|gb|EKX94853.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
          Length = 264

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 127 GGYPQAERCRLSVGHPEAL-TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGY  AER R  + H +   T D   ++ +    N  F   +H D LG+++G GI RE I
Sbjct: 68  GGYAGAERQRAMLRHRDFRGTPDGFGISCVESVWNGQFARLTHRDVLGALMGLGIERELI 127

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI L     A+ +   ++A +++ +L  +G V        L  +     RTK  +   A
Sbjct: 128 GDI-LPAPDTAKIICDTKIAGFIVNNLTMIGAVGAKAALSNLEEIAPREERTKEIRATVA 186

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+D++ +AGF +SRS+  + I+   V++NW +      T++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRLEVTE 246

Query: 306 I-NSTRKGKFAVELIQYL 322
           +   T+KG+  V L ++ 
Sbjct: 247 VRGQTKKGRTVVVLNRFF 264


>gi|395239332|ref|ZP_10417212.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
 gi|394476427|emb|CCI87189.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
          Length = 265

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 13/249 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           +E+  ++ +  +       L +DFL P    +L+E ++  E   D      GGYP AE+ 
Sbjct: 17  KEIDDLIALYNQVEYHDNDLLTDFLDPGQIHILRE-IIGNEFFID----DFGGYPDAEKR 71

Query: 136 RLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
           R+ +   ++     D  + A  +     F    H D LGS+  +GI     GDII     
Sbjct: 72  RVYISERDSEIKPEDFQITAFEVEYANKFIQLRHSDILGSLANSGIELGTFGDIIHDESG 131

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDAL 252
             QF    EL  + +  ++++G   V    +     E   P   S +  E  +SLR+D++
Sbjct: 132 RWQFFAKTELRPFFLEQIDRIGRNKVRIREVA--GKEIIIPEDTSIEKDEIVSSLRLDSI 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
            +   +LSR+K+ ++I  GDV++NW     +   ++  DI+S+   GRIK+ EI +TRKG
Sbjct: 190 LAGISRLSRTKIKDVIEQGDVKLNWLETRNSNIIIKVDDIISLRHFGRIKVVEITTTRKG 249

Query: 313 KFAVELIQY 321
           KF V L  +
Sbjct: 250 KFKVVLKHW 258


>gi|384175283|ref|YP_005556668.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
 gi|349594507|gb|AEP90694.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
          Length = 257

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           + +PE +T   SD ++  A ++     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAIDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLSKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|239631634|ref|ZP_04674665.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066330|ref|YP_003788353.1| cell division protein, S4-like domain [Lactobacillus casei str.
           Zhang]
 gi|417980576|ref|ZP_12621256.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           12A]
 gi|239526099|gb|EEQ65100.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438737|gb|ADK18503.1| Cell division protein, S4-like domain [Lactobacillus casei str.
           Zhang]
 gi|410524899|gb|EKP99806.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           12A]
          Length = 259

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP+AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A   D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|339009200|ref|ZP_08641772.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
           15441]
 gi|421873603|ref|ZP_16305215.1| S4 domain protein [Brevibacillus laterosporus GI-9]
 gi|338773678|gb|EGP33209.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
           15441]
 gi|372457390|emb|CCF14764.1| S4 domain protein [Brevibacillus laterosporus GI-9]
          Length = 257

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V+  LEM R    R+ +  +DFL P  L        ++ DV+  A GGY  AER R ++ 
Sbjct: 15  VERALEMLRLVDERQIIRLTDFLDPRQLFILQSLTSQVQDVRVSASGGYDGAERVR-ALL 73

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           HP  +   D D  +    I GN  F    H D +G++L  GI REK GDI++  E   Q 
Sbjct: 74  HPSYIVPEDVDFGLRLFEIKGNQRFIAWEHRDVMGALLHVGIKREKFGDILV-SEHSCQT 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGF 257
           +V  E+AD++   +  +  + VS   I    L   P +  + KT    S R+DA+     
Sbjct: 133 VVAEEIADFVRMQVASIHRIPVSLQEISFAELTV-PEKKGTNKTFTVMSARLDAIIGEVC 191

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
           KLSR+K +  I  G  +VN   V     ++  GD++S+ G GR +I E+   T+ G+ 
Sbjct: 192 KLSRAKALLPIRAGKCKVNHKIVEDPSHSIAQGDMISLGGFGRFEITEVTGPTKSGRL 249


>gi|321315306|ref|YP_004207593.1| shape determination protein [Bacillus subtilis BSn5]
 gi|449094234|ref|YP_007426725.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis XF-1]
 gi|320021580|gb|ADV96566.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis BSn5]
 gi|449028149|gb|AGE63388.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis XF-1]
          Length = 257

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           + +PE +T   SD ++  A ++     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|431185990|ref|ZP_19500053.1| S4 domain-containing protein [Enterococcus faecium E1620]
 gi|430572975|gb|ELB11810.1| S4 domain-containing protein [Enterococcus faecium E1620]
          Length = 260

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++ T + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVATQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|261206526|ref|ZP_05921226.1| RNA binding protein S4 [Enterococcus faecium TC 6]
 gi|289565436|ref|ZP_06445885.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
           D344SRF]
 gi|294614703|ref|ZP_06694605.1| S4 domain protein [Enterococcus faecium E1636]
 gi|294618999|ref|ZP_06698494.1| S4 domain protein [Enterococcus faecium E1679]
 gi|430851041|ref|ZP_19468797.1| S4 domain-containing protein [Enterococcus faecium E1185]
 gi|431677802|ref|ZP_19524400.1| S4 domain-containing protein [Enterococcus faecium E1904]
 gi|260079236|gb|EEW66927.1| RNA binding protein S4 [Enterococcus faecium TC 6]
 gi|289162765|gb|EFD10616.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
           D344SRF]
 gi|291592441|gb|EFF24048.1| S4 domain protein [Enterococcus faecium E1636]
 gi|291594660|gb|EFF26042.1| S4 domain protein [Enterococcus faecium E1679]
 gi|430534798|gb|ELA75233.1| S4 domain-containing protein [Enterococcus faecium E1185]
 gi|430599295|gb|ELB37006.1| S4 domain-containing protein [Enterococcus faecium E1904]
          Length = 260

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++ T + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVATQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|228998678|ref|ZP_04158265.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
 gi|228761146|gb|EEM10105.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
          Length = 257

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 11/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  + A    +V  +DFL P   +     +    D      G  P+AER R ++ 
Sbjct: 15  VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALI 73

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P  L  ++ D  V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 74  YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G ++VS + +    +L L+ E    K      +SLR+D L + 
Sbjct: 133 IVAKEIVSYIEMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAE 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
              LSR K+  LI NG V+VNW TV +       GD+ S+ G GR K+  +   T++ K+
Sbjct: 190 MLHLSRQKVQPLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|300814713|ref|ZP_07094963.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511186|gb|EFK38436.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 258

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 134/262 (51%), Gaps = 13/262 (4%)

Query: 61  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
           VK N ++LL  + + + + ++K +L+ A           SDFL P  L  +   L  L D
Sbjct: 2   VKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYIDNSSDFLNPHELSLAKSILNSL-D 60

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           +     GGY   E   +++ +P  L     + + A+      G +   H D LGS++G G
Sbjct: 61  IGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFPTIVGIK---HKDVLGSLIGLG 116

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS-CTRIPLLALEYEPPRTK 238
           I R KIGDI++ G++   F V  E+ D+++ +LEK+ N +V  C +     L   P +  
Sbjct: 117 IDRRKIGDILI-GKEFTYFFVKIEIKDFILYNLEKISNYNVKVCLKESTDVL---PIKEY 172

Query: 239 SFKTI-EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
            +K I  +SLR+D   S    LSRSK+ ++IS   V+VN+T   K    L+  D++SV  
Sbjct: 173 FYKDIVTSSLRLDTFLSQALNLSRSKINDIISKDLVKVNFTPENKVSYKLKESDVISVKK 232

Query: 298 KGRIKIGEI-NSTRKGKFAVEL 318
            GRI   +I  +T+K K+  ++
Sbjct: 233 YGRIIFHKILKTTKKDKYLCQI 254


>gi|430755976|ref|YP_007209756.1| hypothetical protein A7A1_0484 [Bacillus subtilis subsp. subtilis
           str. BSP1]
 gi|430020496|gb|AGA21102.1| Hypothetical protein YlmH [Bacillus subtilis subsp. subtilis str.
           BSP1]
          Length = 257

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           + +PE +T   SD ++  A ++     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|406669221|ref|ZP_11076501.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
 gi|405584018|gb|EKB57944.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
          Length = 260

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 14/217 (6%)

Query: 102 FLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALS 156
           FLTP   +E M+A   +E+  D K    GG    ER R  + +P+    +D D  +  L 
Sbjct: 38  FLTP---REQMIAQQIVEEYGDFKIAFYGGIHATERRR-GLIYPDYYQPTDVDYGLTLLQ 93

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +     F   SHG  LG+++  G+ R +IGDII  GE+  Q +V  E++ YLI S++K+ 
Sbjct: 94  LHYPVKFADISHGKILGTLMSQGVDRNRIGDIISDGEQW-QVVVEHEISTYLIHSIDKIS 152

Query: 217 NVSVSCTRIP--LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           NV V    +P  L+ +  E   T+S   + +S+R+D L S  +  SR +  +LI  G+++
Sbjct: 153 NVGVRLEEMPAELMLISQEEWETESI--VVSSMRLDTLISNVYNFSRQRAKDLIQQGNIK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           VN+T   +    +   DI+SV   GR  I  IN   K
Sbjct: 211 VNFTLTERPDIEVSEQDIISVRKFGRFWIESINGRTK 247


>gi|425056577|ref|ZP_18460028.1| S4 domain protein [Enterococcus faecium 505]
 gi|403031607|gb|EJY43207.1| S4 domain protein [Enterococcus faecium 505]
          Length = 260

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++ T + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVATQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|228992632|ref|ZP_04152558.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228766964|gb|EEM15601.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 257

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 11/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  + A    +V  +DFL P   +     +    D      G  P+AER R ++ 
Sbjct: 15  VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIVGNQGDATLRLYGAEPKAERKR-ALI 73

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P  L  ++ D  V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 74  YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G ++VS + +    +L L+ E    K      +SLR+D L + 
Sbjct: 133 IVAKEIVSYIEMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAE 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
              LSR K+  LI NG V+VNW TV +       GD+ S+ G GR K+  +   T++ K+
Sbjct: 190 MLHLSRQKVQPLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|229006180|ref|ZP_04163866.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
 gi|228755021|gb|EEM04380.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
          Length = 246

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 11/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  + A    +V  +DFL P   +     +    D      G  P+AER R ++ 
Sbjct: 4   VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALI 62

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P  L  ++ D  V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 63  YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 121

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G ++VS + +    +L L+ E    K      +SLR+D L + 
Sbjct: 122 IVAKEIVSYIEMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAE 178

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
              LSR K+  LI NG V+VNW TV +       GD+ S+ G GR K+  +   T++ K+
Sbjct: 179 MLHLSRQKVQPLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKW 238

Query: 315 AV 316
            V
Sbjct: 239 RV 240


>gi|429727341|ref|ZP_19262115.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
 gi|429152793|gb|EKX95603.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
          Length = 260

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 121/248 (48%), Gaps = 14/248 (5%)

Query: 76  NAIEEVKHILEMARRASSRREVLHS------DFLTPPVLKESMMALEKLADVKAVAQGGY 129
           N I++ +  ++M R   S   VL S      +FL P  +K ++  L    D+K   +GGY
Sbjct: 8   NHIKDEELKVKMYRVIDSCNSVLKSHSIRTTEFLNPYEVKNAVAILNTEPDLKYKLEGGY 67

Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
             A R  + +       S+   +    ++GNF F+  SH D+LGSILG GI REK+GDI+
Sbjct: 68  DGAIRSVMLISQYYCDLSEESSIRCFQVSGNFKFKSVSHRDYLGSILGLGIKREKLGDIL 127

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF--KTIE-AS 246
           +  E   Q +V  ++ DY++ +LE+V    V+   I +  +    P    F  K I  AS
Sbjct: 128 VH-EDYCQIIVSSDMGDYVLYNLERVARNRVTVKEIGISDI---IPVEDEFDIKNISVAS 183

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
           LR+D + +  F LSR      I    V V++  +      +    ++SV   G+  + EI
Sbjct: 184 LRLDGIIAGVFNLSRQDASKFIGAEYVSVDYEKIDNPSKQVEEKSVISVRKCGKFILDEI 243

Query: 307 NS-TRKGK 313
              ++KGK
Sbjct: 244 GGVSKKGK 251


>gi|347750593|ref|YP_004858158.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 36D1]
 gi|347583111|gb|AEO99377.1| RNA-binding S4 domain protein [Bacillus coagulans 36D1]
          Length = 258

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P + +     +     V   A GGY ++ER R+ +  P+  + D D   +A   +
Sbjct: 35  TDFLDPRMQRIVNTVIGNHGAVSVRAFGGYRESERKRMLL-FPDYFSPDEDDFHLALFEV 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LGS++  G+ REK GDI++ GE   QF V  EL+D++     ++G 
Sbjct: 94  HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI-GEGRIQFFVAAELSDFIQMEFRQIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
             V+ T++ L     +  R    +   +SLR+DA+ SA + +SR K   LI +G V+VNW
Sbjct: 153 TPVTLTKMQLGEAIGQQQRWLEKQATVSSLRLDAILSAVYNISRQKTRALIEHGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
            TV         GD  S  G GR ++  +   T+K K+
Sbjct: 213 KTVEDPAFQCEEGDTFSARGYGRSRLIRVEGKTKKEKW 250


>gi|347525731|ref|YP_004832479.1| RNA binding protein [Lactobacillus ruminis ATCC 27782]
 gi|345284690|gb|AEN78543.1| RNA binding protein [Lactobacillus ruminis ATCC 27782]
          Length = 261

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 90  RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SD 148
           RA      + + FL P     + + + +  DVK    GG+  +ER R+ + +PE     D
Sbjct: 25  RAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFLGSERKRI-LFYPEYYEPQD 83

Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
            D  ++ L I     F    H   LG++   G+ R+ IGDII  G K  QF    E+  Y
Sbjct: 84  NDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKW-QFFCEKEIEPY 142

Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267
           L+ +++KVG V V    IPL               I +SLR D L S+ + LSR  + +L
Sbjct: 143 LLENIDKVGKVKVKLGEIPLQNAVSPIEEWDHATVILSSLRCDVLISSVYNLSRKHVKDL 202

Query: 268 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
           +    V +NW   +K    +R  D++SV G GR+++ E+   ++KGKF
Sbjct: 203 LQTNKVSLNWMIFSKADFEIRVHDVLSVRGYGRVRMDELTGVSKKGKF 250


>gi|296331117|ref|ZP_06873591.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674272|ref|YP_003865944.1| shape determination protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151761|gb|EFG92636.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412516|gb|ADM37635.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 257

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 154
           +DFL P   +E ++  A+   ADV     GGY +AER R ++ +PE LT   SD ++  A
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYLTPEESDFEL-QA 89

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            ++     F    H   LG+++G G+ R+K GDI+   E   Q +V  + AD++   L +
Sbjct: 90  FNVRYAEKFVSVEHRSLLGALMGIGLKRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
            G  +VS  +I L  L       +      +SLR+DA+ ++  + SR K   L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNW  V      +  GD++SV G GR  + +I   T+K K+ V
Sbjct: 209 VNWKVVEDPSYMVAEGDMLSVRGFGRCSLTKIEGKTKKDKWRV 251


>gi|352516938|ref|YP_004886255.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
           12172]
 gi|348601045|dbj|BAK94091.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
           12172]
          Length = 260

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
           ++FL P    + E+++  E  +++K    GGY +AER R  +       S  D  +   +
Sbjct: 36  TEFLDPRQAFILETLVRQE--SELKFRFFGGYEEAERSRCLIFPNYYEPSQEDFEIDLFN 93

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +     F   SHG  LGS++GTGI RE +GDII  GE   Q  +  E++ Y+   L K+G
Sbjct: 94  VHYPKKFTVLSHGKILGSLVGTGIRREFLGDIISDGE-NWQVFIAKEISSYVQLQLSKIG 152

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           NV V    +  + +        +  T  +SLR+D + S  F +SR +   L   G V+VN
Sbjct: 153 NVKVRLEELSYVDILIPKDGWTNENTTVSSLRLDNVISTVFNISRQRAKQLTETGKVKVN 212

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           W    +    L   DIVS+ G GR++I  I  +T+KGK  ++L
Sbjct: 213 WAPTQRPDFVLDLLDIVSIRGFGRLQIQVIEGTTKKGKIRLDL 255


>gi|332638197|ref|ZP_08417060.1| RNA-binding S4 domain-containing protein [Weissella cibaria KACC
           11862]
          Length = 261

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEA 144
           + R+A      + ++FL P         + +  D+K   +GGY  AE  R  +   + + 
Sbjct: 23  LIRQALDEYRPVLTNFLNPRQRYIIETLVNQHDDLKWQHEGGYADAESARTVIAPAYYDI 82

Query: 145 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QFLVVPE 203
             SD ++ A ++I     F    H   LG+++  GI R+ IGDII  GE+G   FL    
Sbjct: 83  QQSDFEL-AVIAINYPQKFAELHHSTILGTLMNNGITRDSIGDII-SGEEGTWHFLTTVP 140

Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           +A Y+ T+++ +G   V      L  +           T  +SLR+D L + G+ +SR+ 
Sbjct: 141 MATYIQTTMDHIGKTKVRFETASLTDISAPIEEWTEIDTTVSSLRLDTLVANGYNVSRTH 200

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 318
              L+  G VRVNWT V +    L   D+VSV   GR+K + E   T+K K+ V L
Sbjct: 201 AKELVERGQVRVNWTDVDRPDFVLAVNDLVSVRHFGRLKLVAENGMTKKDKWRVSL 256


>gi|323340623|ref|ZP_08080875.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
           25644]
 gi|335996874|ref|ZP_08562791.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
 gi|417974377|ref|ZP_12615198.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
 gi|323091746|gb|EFZ34366.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
           25644]
 gi|335351944|gb|EGM53435.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
 gi|346329374|gb|EGX97672.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
          Length = 261

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           E+  RA      + + FL P     + + + +  DVK    GG+  +ER R+ + +PE  
Sbjct: 21  EVIVRAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFSGSERKRI-LFYPEYY 79

Query: 146 T-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
              D D  ++ L I     F    H   LG++   G+ R+ IGDII  G K  QF    E
Sbjct: 80  EPQDNDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKW-QFFCEKE 138

Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           +  YL+ +++++G V V    IPL               + +SLR D L S+ + LSR  
Sbjct: 139 IEPYLLENIDRIGKVKVKLGEIPLQNAVSPIEEWDHATVVLSSLRCDVLISSVYNLSRKH 198

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
           + +L+    V +NW  ++K    +R  D++SV G GR+++ E+   ++KGKF
Sbjct: 199 VKDLLQTNKVSLNWMILSKADFEIRVHDVLSVRGYGRVRMDELTGVSKKGKF 250


>gi|259047006|ref|ZP_05737407.1| S4 domain-containing protein YlmH [Granulicatella adiacens ATCC
           49175]
 gi|259036325|gb|EEW37580.1| S4 domain-containing protein YlmH [Granulicatella adiacens ATCC
           49175]
          Length = 263

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 9/249 (3%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQA 132
           K  I  +K + E       +   + +++L P    + E+++   +  DV+    GGY  A
Sbjct: 11  KEEISFLKQVEEWVEEVRLQYAPVLTNYLDPRQQFIVEAIVG--QYDDVRYYFDGGYIDA 68

Query: 133 ER--CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
           ER  C +   + E    D +  A   I     F    HG  LGS++  G  R  IGDII 
Sbjct: 69  ERKRCMICPDYYEPTLEDFE-NALFHIQYPKKFATLGHGKILGSLMSLGFDRSLIGDIIS 127

Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
            GE   Q      + +Y+   LEK+G V+V    +    L        + +T+ +SLR+D
Sbjct: 128 NGE-DWQLFCAQNMKEYIKQQLEKIGKVAVRLEEVDYTKLIVPVDHWTNIQTVVSSLRLD 186

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-T 309
            + ++ F +SR +   +I +G V+VNWT   +    L   DIVS+ G GR++I +I   T
Sbjct: 187 TVIASVFNVSRQRSKEMIESGKVKVNWTEENRPDFLLEILDIVSIRGYGRLQIQKIEGRT 246

Query: 310 RKGKFAVEL 318
           +K K  +EL
Sbjct: 247 KKDKIKIEL 255


>gi|282882016|ref|ZP_06290657.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
           315-B]
 gi|281298046|gb|EFA90501.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
           315-B]
          Length = 258

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 61  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
           VK N ++LL  + + + + ++K +L+ A           SDFL P  L  +   L  L D
Sbjct: 2   VKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYVDNSSDFLNPHELSLAKSILNSL-D 60

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           +     GGY   E   +++ +P  L     + + A+      G +   H D LGS++G G
Sbjct: 61  IGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFPTIVGIK---HKDVLGSLIGLG 116

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I R KIGDI++ G++   F V  E+ D+++ +LEK+ N +V  +     + +  P +   
Sbjct: 117 IDRRKIGDILI-GKEFTYFFVKIEIKDFILYNLEKISNYNVKVSLKE--STDVLPIKEYF 173

Query: 240 FKTI-EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
           +K I  +SLR+D   S    LSRSK+ ++IS   V+VN+T   K    L+  D++SV   
Sbjct: 174 YKDIVTSSLRLDTFLSQALNLSRSKINDIISKDLVKVNFTPENKVSYKLKESDVISVKKY 233

Query: 299 GRIKIGEI-NSTRKGKFAVEL 318
           GRI   +I  +T+K K+  ++
Sbjct: 234 GRIIFHKILKTTKKDKYLCQI 254


>gi|254556999|ref|YP_003063416.1| cell division protein () [Lactobacillus plantarum JDM1]
 gi|300768837|ref|ZP_07078731.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180991|ref|YP_003925119.1| cell division protein () [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|380032932|ref|YP_004889923.1| cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus plantarum WCFS1]
 gi|418275728|ref|ZP_12891051.1| cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus plantarum subsp. plantarum NC8]
 gi|448821702|ref|YP_007414864.1| Cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus plantarum ZJ316]
 gi|254045926|gb|ACT62719.1| cell division protein (putative) [Lactobacillus plantarum JDM1]
 gi|300493570|gb|EFK28744.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046482|gb|ADN99025.1| cell division protein (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|342242175|emb|CCC79409.1| cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus plantarum WCFS1]
 gi|376009279|gb|EHS82608.1| cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus plantarum subsp. plantarum NC8]
 gi|448275199|gb|AGE39718.1| Cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus plantarum ZJ316]
          Length = 261

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 14/260 (5%)

Query: 66  DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           D+L +   D  A  IE+V   L   R+ + +   + + FL P  +  +   + +L DV+ 
Sbjct: 3   DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQIYIAQTLVNQLDDVRM 59

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTG 179
            A GG+  AE  R+ + +P  +  +P++    +   +I     F    HG  LG++   G
Sbjct: 60  RASGGFEGAELQRI-LFYP--VYYEPEVADFQITLFNIVYPVKFATLKHGQILGTLANAG 116

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           + R+  GDI+  G    QF+   E+A Y    +++ G   V  T +PL A+       ++
Sbjct: 117 VERDVFGDIVTDGTTW-QFVCETEMASYFEEQIDRFGKTKVHLTAVPLSAVITPEDDWEA 175

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
             T  +SLR D++  A F LSR     LI    VR+NW  + K    L   D++SV+  G
Sbjct: 176 VTTTVSSLRADSIIKAAFNLSRHHAKELIEGAKVRLNWADLPKADYELALLDMLSVNHYG 235

Query: 300 RIKIGEIN-STRKGKFAVEL 318
           R+++ EI+  T+K +  + L
Sbjct: 236 RVRLAEISGETKKARLRITL 255


>gi|423401260|ref|ZP_17378433.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
 gi|423478036|ref|ZP_17454751.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
 gi|401654250|gb|EJS71793.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
 gi|402428198|gb|EJV60295.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
          Length = 255

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLEVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +      +GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYSGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|392949181|ref|ZP_10314772.1| cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus pentosus KCA1]
 gi|392435596|gb|EIW13529.1| cell division protein, RNA-binding S4 domain-containing protein
           [Lactobacillus pentosus KCA1]
          Length = 261

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 66  DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           D+L +   D  A  IE+V   L   R+ + +   + + FL P  +  +     +L DV+ 
Sbjct: 3   DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQVYIAQTLANQLDDVRM 59

Query: 124 VAQGGYPQAERCRLSVGHP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
            A GG+  AE  R+    P  E  T+D  I    +I     F    HG  LG++   G+ 
Sbjct: 60  RAYGGFEGAELQRILFYPPYYEPETADFQITL-FNIVYPVKFATLKHGQILGTLANAGVE 118

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCT-----RIPLLALEYEPPR 236
           R+  GDII  GE   QF+   E+ADY    +++ G   V  T     ++ +   ++EP  
Sbjct: 119 RDVFGDIITDGEHW-QFVCESEMADYFNDQIDRFGKTKVHLTAVAGSKVIVREDDWEP-- 175

Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
                T  +SLR D++  A F LSR     LI  G VR+NW  + K    L   D++SV+
Sbjct: 176 ---VTTTVSSLRADSIIKAAFNLSRHHAKELIEGGKVRLNWAELPKADYELALLDMLSVN 232

Query: 297 GKGRIKIGEIN-STRKGKFAVEL 318
             GR+++ EI+  T+K +  + L
Sbjct: 233 HYGRVRLAEISGETKKARLRITL 255


>gi|373106343|ref|ZP_09520646.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
 gi|371652718|gb|EHO18126.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
          Length = 253

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 8/245 (3%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
            +L+++R+   R    HS FLT    + +   L  +A ++ ++ G +  AER ++    P
Sbjct: 12  RLLDLSRQCEDRNVPTHSYFLTVEEQRLAAQCLPNVAGIRMISDGVFCDAER-KVLFFLP 70

Query: 143 EALTSDPD---IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
             L   P+   I   L+       +P  H DFLG+++G GI RE +GD+++  E  AQ +
Sbjct: 71  SYLEEPPEDELICLELAPRAPKFAEPLGHRDFLGALMGLGIRREMLGDLMVT-ENKAQLV 129

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
            +P +   +   L +V +  +    IP  AL     RT+      ASLR D L +A + L
Sbjct: 130 ALPSVKALIERELTEVRHTRIEVLEIPREALSA-VRRTEVRSVNAASLRADVLVAAVWNL 188

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI--GEINSTRKGKFAVE 317
           SR++     S G V  N T ++     LR GD++S+ GKG+ ++   E  STR G+  V+
Sbjct: 189 SRTRAKEAFSTGKVLRNGTELSNPAEVLRAGDVMSLRGKGKFRLCDAEPRSTRSGRLYVD 248

Query: 318 LIQYL 322
           +  ++
Sbjct: 249 IAYFV 253


>gi|423395802|ref|ZP_17373003.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
 gi|423406678|ref|ZP_17383827.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
 gi|401653544|gb|EJS71088.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
 gi|401659968|gb|EJS77451.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
          Length = 255

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGATPHAER-RRAII 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+      +   T+ +SLR+D + +   
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLSSVQGEQILQINETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
            LSR K+  LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HLSRQKIQPLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|336054343|ref|YP_004562630.1| cell-division protein [Lactobacillus kefiranofaciens ZW3]
 gi|333957720|gb|AEG40528.1| Cell-division protein [Lactobacillus kefiranofaciens ZW3]
          Length = 266

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 9/225 (4%)

Query: 98  LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAAL 155
           L +DFL P   K +++      DV     GGYP+AE+ R+ +   E L   P D  +   
Sbjct: 38  LLTDFLDPG--KRTILKTVVGNDVFIQEYGGYPEAEKKRVYLSE-EWLNLQPADYQIQPY 94

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            I  +  F   SH   LG++  +GI  +  GDII   +   QF    EL D+    +++V
Sbjct: 95  EIKYSQKFNRISHSAILGTLANSGIDTDTFGDIITDSKGNWQFFAKKELTDFFEEQIDRV 154

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLISNGDV 273
           G   V     P+   +   P   S K IE  AS+R+DA+ +   + SR ++  +I    V
Sbjct: 155 GRSQVKLK--PISFKQVLVPEDDSVKQIEIIASMRIDAVLAGISRKSRGQIQKMIEANLV 212

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           ++NW  V  +   ++  D++S+   GRIKI +I++TRKGK+ V L
Sbjct: 213 KLNWHDVMDSNIMVKENDVLSLRHFGRIKIEDISATRKGKYKVVL 257


>gi|154496340|ref|ZP_02035036.1| hypothetical protein BACCAP_00628 [Bacteroides capillosus ATCC
           29799]
 gi|150274423|gb|EDN01500.1| S4 domain protein [Pseudoflavonifractor capillosus ATCC 29799]
          Length = 266

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 10/244 (4%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVG 140
           LE+A R   R    H+ FL+P       M +        +  GG+  AER  C       
Sbjct: 27  LELAGR---RNIPAHTAFLSPQERSSVEMLINASGHPSHLFYGGFEGAERTICVFLPDWQ 83

Query: 141 HPEALTSDPDIVAALSITGNFGFQP-CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
            PE   +D +     ++   F      +H DFLGSILG G+ REK+GD+++        L
Sbjct: 84  APEDWLADGEDFPICALRCTFPEDAGLTHRDFLGSILGLGLDREKVGDLLVS-PGVCDIL 142

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           ++ E+ D+L+  LE  G   +    + L AL       K  +   A+LR+DA+A++ F L
Sbjct: 143 LLKEIEDFLLLHLESAGRTRLKVAPVALSALTPPKVEVKLIRDTVATLRLDAVAASAFSL 202

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            RSK  +LIS+G V++N    TK   T+  GD++S  G G+  +  +   ++KG+  +E+
Sbjct: 203 PRSKAADLISSGRVQLNHRECTKPDRTVAQGDVISCRGMGKAAVKTVGGVSKKGRIIIEV 262

Query: 319 IQYL 322
            +YL
Sbjct: 263 ERYL 266


>gi|227535234|ref|ZP_03965283.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187118|gb|EEI67185.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 259

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
            GF +SR +   LI  G VR+ +         + T DI+SV G GR+++ EI   ++KGK
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLKFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGK 249

Query: 314 FAV 316
             V
Sbjct: 250 LRV 252


>gi|306832984|ref|ZP_07466116.1| S4 domain-containing protein YlmH [Streptococcus bovis ATCC 700338]
 gi|304424883|gb|EFM28017.1| S4 domain-containing protein YlmH [Streptococcus bovis ATCC 700338]
          Length = 263

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 73  GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
           G+ + IE++    ++ARR  +    + +DFL P  +  +   +        V+   YP A
Sbjct: 14  GEYDFIEKID---DLARRVEATYAYVLTDFLNPRQVDIARSVIGNRGLHYFVSSDYYP-A 69

Query: 133 ERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDII 189
           E  RL V  P+    +P+   +  L +  N  F   +H   +G++L   GI R  IGDI+
Sbjct: 70  EYARLIVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDIL 128

Query: 190 LQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 248
           +  E G AQ LV   +ADY    + K+   SVS   IPL  L      ++    I +S+R
Sbjct: 129 V--ESGYAQLLVTQNMADYFRADVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMR 186

Query: 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEIN 307
           +D + +   KLSRS+ V LI    V++N+  V +    L+ GD++SV G GR  I  E  
Sbjct: 187 MDKVLATVLKLSRSQAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENG 246

Query: 308 STRKGK 313
            T+ GK
Sbjct: 247 LTKNGK 252


>gi|16078605|ref|NP_389424.1| hypothetical protein BSU15410 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309415|ref|ZP_03591262.1| hypothetical protein Bsubs1_08521 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313740|ref|ZP_03595545.1| hypothetical protein BsubsN3_08457 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318664|ref|ZP_03599958.1| hypothetical protein BsubsJ_08391 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322937|ref|ZP_03604231.1| hypothetical protein BsubsS_08497 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|402775786|ref|YP_006629730.1| shape determination RNA-binding protein [Bacillus subtilis QB928]
 gi|418033313|ref|ZP_12671790.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
           str. SC-8]
 gi|452914017|ref|ZP_21962644.1| S4 domain protein [Bacillus subtilis MB73/2]
 gi|81345679|sp|P71020.1|YLMH_BACSU RecName: Full=Putative RNA-binding protein YlmH
 gi|1518679|gb|AAB49278.1| orf [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633914|emb|CAB13415.1| factor involved in shape determination, RNA-binding fold [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|351469461|gb|EHA29637.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
           str. SC-8]
 gi|402480969|gb|AFQ57478.1| Factor involved in shape determination, RNA-binding fold protein
           [Bacillus subtilis QB928]
 gi|407958948|dbj|BAM52188.1| shape determination protein [Synechocystis sp. PCC 6803]
 gi|407964525|dbj|BAM57764.1| shape determination protein [Bacillus subtilis BEST7003]
 gi|452116437|gb|EME06832.1| S4 domain protein [Bacillus subtilis MB73/2]
          Length = 257

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +  PE +T   SD ++  A ++     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILFPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|268319699|ref|YP_003293355.1| hypothetical protein FI9785_1227 [Lactobacillus johnsonii FI9785]
 gi|262398074|emb|CAX67088.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 265

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGH-PEALTSDPDI 151
           + E + +DFL P   +E  +  E +     +   GG+  AE+ R+ +    E    D   
Sbjct: 34  KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCEWSEGYKPDEFN 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           ++ L I     +   +H   LG +   GI  +  GDII       QF V  EL DY +  
Sbjct: 91  ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFVKAELKDYFLEE 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++++G   V  + +PL  +  +   ++   ++  SLR+DA+ SA   LSRS++  +I  G
Sbjct: 151 IDRIGRTKVKLSELPLSKVLMQEDDSEEMTSVTISLRLDAVISAITNLSRSQVKKIIEAG 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +V++NW  VT++   +   D++S+   GR +I  + +T+KGK  +E+
Sbjct: 211 EVKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257


>gi|392987361|ref|YP_006485954.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
 gi|392334781|gb|AFM69063.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
          Length = 293

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 17/232 (7%)

Query: 100 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 154
           +DFL P   ++S + LE L    +++     GGY QAER R  +       +D D  V+ 
Sbjct: 36  TDFLDP---RQSYI-LETLIRQDSELHFSFYGGYEQAERKRCLIFPDYYEPTDEDFEVSL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
             I     F   +HG  LG+++GTGI R   GDII  G++  Q  +  E+  ++ T + K
Sbjct: 92  YEIHYPSKFASLTHGKVLGTLVGTGIKRAYFGDIISDGDR-WQVFIAREVEQFVATQVTK 150

Query: 215 VGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           +G VSV     P+   E   P+   T+   T+  SLR+D++ S  + +SR +   LI +G
Sbjct: 151 IGKVSVRME--PIKYTELLVPKDGWTQERGTV-TSLRLDSVISEIYNISRQRSKQLIESG 207

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
            V+VNWT  T+    L   DIVS+ G GRI+I E+   T+K      L+ Y+
Sbjct: 208 KVKVNWTENTRPDFLLELLDIVSIRGFGRIQIQELEGKTKKKNTGYYLVYYV 259


>gi|392394894|ref|YP_006431496.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
           ATCC 51507]
 gi|390525972|gb|AFM01703.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
           ATCC 51507]
          Length = 265

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 8/245 (3%)

Query: 80  EVKHILEMARRASSRREVLHSDFLTPPV--LKESMMALEKLADVKAVAQGGYPQAERCRL 137
           E  H+L++   A  + + + + FL   +    E ++  E LA      +GG+P +ER R 
Sbjct: 21  EGAHLLDLCNEALKKAKPVWTPFLGQALGNWLEGILRREGLA---FRPEGGFPDSERVRF 77

Query: 138 SVGH-PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +G   + L + P  +  L  T         H   LGS++G G+ RE +GDI    E   
Sbjct: 78  LIGEDADVLDNIPSEIRTLRATPVDPRGKLEHRQVLGSLIGLGLKREVVGDIRFT-EHSC 136

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
              V  +++D+L++  +K G   +    +    +E    + K  +   AS R+DA+AS+G
Sbjct: 137 LVAVAQDISDFLLSQWDKAGRERIRVEAVEG-DVEVSVEQGKERRITAASSRIDAVASSG 195

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAV 316
           F +SR+ L  LI  G V+ N   V+K    ++ GDI+S  G GR+++ E   TRKG+ A 
Sbjct: 196 FNVSRTVLQELIQQGKVKRNDLLVSKADMEVKPGDILSCRGYGRMRLIEFQETRKGRIAW 255

Query: 317 ELIQY 321
            +I Y
Sbjct: 256 NIILY 260


>gi|229162833|ref|ZP_04290790.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
 gi|228620715|gb|EEK77584.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
          Length = 241

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 12/234 (5%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +R +   +V  +DFL P   +   M + +  DV     G  P AER R ++ +P+ L  +
Sbjct: 8   KRTAEHHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLEVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIIVAKEIVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           Y+  +L+ +G V VS + I    +L + +E    KS     +SLR+D + +    +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLSSIQGEQILQM-HETWGEKSGTV--SSLRLDVMLAEMLHVSRQK 181

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +  LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 182 VQPLIRNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGKTKRDKWRI 235


>gi|373462939|ref|ZP_09554600.1| S4 domain protein [Lactobacillus kisonensis F0435]
 gi|371765759|gb|EHO54063.1| S4 domain protein [Lactobacillus kisonensis F0435]
          Length = 193

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           + A  I     F   SHG  LGSI+G GI R+ IGDII  G    QF+   E+ADY+   
Sbjct: 20  ITAFQIDYPSKFATLSHGQILGSIMGAGIDRDVIGDIITDG-PNWQFMCESEMADYVRVQ 78

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++KVG + V    I    + +    +++  T  +SLRVD L S GF +SR     L+  G
Sbjct: 79  VDKVGKIKVKLKPIEPDQIIHPVDESEAVTTTVSSLRVDTLISEGFHISRHHAKELVDGG 138

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
            VR+NW    +    L   DIVSV G GRI I +I   T+K K  + +  Y
Sbjct: 139 MVRINWVDSERPDLELSIQDIVSVRGFGRIVIKDILGVTKKEKIRIVINIY 189


>gi|257877585|ref|ZP_05657238.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
 gi|257811751|gb|EEV40571.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
          Length = 260

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)

Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 155
           +DFL P    + ES+  + +  D+     GGY  AER  C +   + E  T + D+    
Sbjct: 36  TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLIYPDYYEPTTDEFDM-TLF 92

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           +I     F   SHG  LG+++GTG+ RE  GDI+  GE   Q  V  E++ ++   ++K+
Sbjct: 93  TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEIW-QVFVAAEVSHFIQLQVDKI 151

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
           GNVSV         L          +   +SLR+D + SA + +SR +   LI +G V+V
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           NWT   +    L   DIVSV G GRI+I  +  T K
Sbjct: 212 NWTEALRPDFVLDLLDIVSVRGFGRIQIQGLEGTTK 247


>gi|154483518|ref|ZP_02025966.1| hypothetical protein EUBVEN_01222 [Eubacterium ventriosum ATCC
           27560]
 gi|149735428|gb|EDM51314.1| S4 domain protein [Eubacterium ventriosum ATCC 27560]
          Length = 251

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           ++A  + +R    ++DFL    +        +L  V     GG   AER R++V  PE +
Sbjct: 14  DLANSSYNRNIYTYTDFLNLNEISILNSYKNQLPPVNVELAGGNDYAER-RIAVFSPEDI 72

Query: 146 TSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
               D+    +    I  ++     SH D LG+IL  GI R KIGDI L+  + A    +
Sbjct: 73  YYTQDLPIKLIEIAPINSHYA-DKLSHRDVLGAILNLGIVRNKIGDIFLKDNQ-AYVYCI 130

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFK 258
            +++ Y+  +L+K+ +  V CT   + A+   P     FK I+   +++R+D+L +  F 
Sbjct: 131 DDISGYIAENLKKIKHTIVKCTVKYMEAVNITP----EFKIIKGTISNIRLDSLIATAFG 186

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVE 317
            SRS +++ I +G V VN   VT NG   +  DI+SV GKGR I  G++  T+KG+  + 
Sbjct: 187 TSRSSIISFIESGKVFVNGKMVTSNGHQPKPDDIISVRGKGRFIFEGQLGVTKKGRNLIS 246

Query: 318 LIQYL 322
           +  Y+
Sbjct: 247 IKLYI 251


>gi|334882317|emb|CCB83314.1| putative cell division protein [Lactobacillus pentosus MP-10]
 gi|339639144|emb|CCC18372.1| putative cell division protein [Lactobacillus pentosus IG1]
          Length = 261

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 18/262 (6%)

Query: 66  DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           D+L +   D  A  IE+V   L   R+ + +   + + FL P  +  +     +L DV+ 
Sbjct: 3   DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQVYIAQTLANQLDDVRM 59

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
            A GG+  AE  R+    P       D  +   +I     F    HG  LG++   G+ R
Sbjct: 60  RAYGGFEGAELQRILFYPPYYEPEAADFQITLFNIVYPVKFATLKHGQILGTLANAGVER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI---PLLALE--YEPPRT 237
           +  GDII  GE   QF+   E+ADY    +++ G   V  T +    ++A E  +EP   
Sbjct: 120 DVFGDIITDGEHW-QFVCESEMADYFNDQIDRFGKTKVHLTAVAGSEVIAREDDWEP--- 175

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
               T  +SLR D++  A F LSR     LI  G VR+NW  + K    L   D++SV+ 
Sbjct: 176 --VTTTVSSLRADSIIKAAFNLSRHHAKELIEGGKVRLNWAELPKADYELALLDMLSVNH 233

Query: 298 KGRIKIGEIN-STRKGKFAVEL 318
            GR+++ EI+  T+K +  + L
Sbjct: 234 YGRVRLAEISGETKKARLRITL 255


>gi|42518903|ref|NP_964833.1| hypothetical protein LJ0978 [Lactobacillus johnsonii NCC 533]
 gi|417837781|ref|ZP_12484019.1| hypothetical protein, contains S4-like RNA binding domain
           containing protein [Lactobacillus johnsonii pf01]
 gi|41583189|gb|AAS08799.1| hypothetical protein LJ_0978 [Lactobacillus johnsonii NCC 533]
 gi|338761324|gb|EGP12593.1| hypothetical protein, contains S4-like RNA binding domain
           containing protein [Lactobacillus johnsonii pf01]
          Length = 265

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCR-LSVGHPEALTSDPDI 151
           + E + +DFL P   +E  +  E +     +   GG+  AE+ R L     E    D   
Sbjct: 34  KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCDWSEGYKPDEFN 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           ++ L I     +   +H   LG +   GI  +  GDII       QF +  EL DY +  
Sbjct: 91  ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFIKAELKDYFLEE 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++++G   V  + +PL  +  +   ++   ++  SLR+DA+ SA   LSRS++  +I  G
Sbjct: 151 IDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKIIEAG 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +V++NW  VT++   +   D++S+   GR +I  + +T+KGK  +E+
Sbjct: 211 EVKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257


>gi|257867506|ref|ZP_05647159.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
 gi|257873835|ref|ZP_05653488.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
 gi|257801562|gb|EEV30492.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
 gi|257807999|gb|EEV36821.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
          Length = 260

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)

Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 155
           +DFL P    + ES+  + +  D+     GGY  AER  C +   + E  T + D+    
Sbjct: 36  TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLIYPDYYEPTTDEFDM-TLF 92

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           +I     F   SHG  LG+++GTG+ RE  GDI+  GE   Q  V  E++ ++   ++K+
Sbjct: 93  TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEIW-QVFVATEVSHFIQLQVDKI 151

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
           GNVSV         L          +   +SLR+D + SA + +SR +   LI +G V+V
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           NWT   +    L   DIVSV G GRI+I  +  T K
Sbjct: 212 NWTEALRPDFVLDLLDIVSVRGFGRIQIQGLEGTTK 247


>gi|431779317|ref|ZP_19567512.1| S4 domain-containing protein [Enterococcus faecium E4389]
 gi|430642172|gb|ELB77953.1| S4 domain-containing protein [Enterococcus faecium E4389]
          Length = 260

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++   + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIQRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|423457918|ref|ZP_17434715.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
 gi|401148302|gb|EJQ55795.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
          Length = 255

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|194014420|ref|ZP_03053037.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
 gi|194013446|gb|EDW23011.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
          Length = 258

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +L   + A  +  +  +DFL P     +   ++   ++  +  GGY  AER R  + 
Sbjct: 16  VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI- 74

Query: 141 HPEAL---TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +PE L   T D ++ +   +     F    H   LGS++GTG+ R+K GD++   E+  Q
Sbjct: 75  YPEYLQPATQDAEL-SYFQVNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLF-SEEDVQ 132

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           F+   ++AD++   L  VG  SVS   I    L+    +T   +   +SLR+DA+ +A  
Sbjct: 133 FICTSDVADFVRAQLTHVGRASVSLEEITQADLKPVKSKTDIKEDTISSLRLDAVCAAIS 192

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           + SR K   L+ NG V+VNW        T+  GD +SV G GR  +  I+  T+K KF V
Sbjct: 193 RQSRQKAQLLVKNGLVKVNWKVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252


>gi|398310642|ref|ZP_10514116.1| shape determination protein [Bacillus mojavensis RO-H-1]
          Length = 257

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILAAVTGQADVGLAFCGGYGRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           + +PE +T   SD ++  A  +     F    H   LGS++G G+ R+K GD++   E  
Sbjct: 72  ILYPEYITPEESDFEL-QAFDVRYAEKFVTVDHRSLLGSLMGIGLKRQKFGDLVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  E AD++   L + G  +V   +I L  L+      +      +SLR+DA+ ++
Sbjct: 130 VQIIVSAETADFVAAQLTQAGKAAVKLEKIDLSDLKIPALDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYQVAEGDMLSIRGFGRCSLTKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|417986647|ref|ZP_12627214.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           32G]
 gi|410525233|gb|EKQ00137.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
           32G]
          Length = 249

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
           + H  E+   A +    + +DF  P   ++  S+++ +   D+K V  GGYP AER R+ 
Sbjct: 16  IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73

Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +  +  A  +D DI   L I     F    H    G++L  G+ R+  GDII  G+   
Sbjct: 74  FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW- 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALAS 254
           QF V   + D++ ++++K+G V V  T  PL   +Y  P    +      ++LR+D + +
Sbjct: 132 QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVA 189

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306
            GF +SR +   LI  G VR+N+         + T DI+SV G GR+++ EI
Sbjct: 190 HGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEI 241


>gi|431765945|ref|ZP_19554444.1| S4 domain-containing protein [Enterococcus faecium E4215]
 gi|430627388|gb|ELB63890.1| S4 domain-containing protein [Enterococcus faecium E4215]
          Length = 260

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++   + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|69244706|ref|ZP_00602970.1| RNA-binding S4 [Enterococcus faecium DO]
 gi|257879374|ref|ZP_05659027.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
 gi|257881760|ref|ZP_05661413.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
 gi|257885186|ref|ZP_05664839.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
 gi|257890200|ref|ZP_05669853.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
 gi|257893528|ref|ZP_05673181.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
 gi|260558816|ref|ZP_05831005.1| RNA binding protein S4 [Enterococcus faecium C68]
 gi|293553193|ref|ZP_06673830.1| S4 domain protein [Enterococcus faecium E1039]
 gi|293560466|ref|ZP_06676958.1| S4 domain protein [Enterococcus faecium E1162]
 gi|293568292|ref|ZP_06679616.1| S4 domain protein [Enterococcus faecium E1071]
 gi|294621611|ref|ZP_06700776.1| S4 domain protein [Enterococcus faecium U0317]
 gi|314937863|ref|ZP_07845179.1| S4 domain protein [Enterococcus faecium TX0133a04]
 gi|314941354|ref|ZP_07848247.1| S4 domain protein [Enterococcus faecium TX0133C]
 gi|314950113|ref|ZP_07853399.1| S4 domain protein [Enterococcus faecium TX0082]
 gi|314951346|ref|ZP_07854400.1| S4 domain protein [Enterococcus faecium TX0133A]
 gi|314992823|ref|ZP_07858224.1| S4 domain protein [Enterococcus faecium TX0133B]
 gi|314997983|ref|ZP_07862878.1| S4 domain protein [Enterococcus faecium TX0133a01]
 gi|383328093|ref|YP_005353977.1| S4 domain-containing protein [Enterococcus faecium Aus0004]
 gi|389867983|ref|YP_006375406.1| 30S ribosomal protein S4e [Enterococcus faecium DO]
 gi|406580474|ref|ZP_11055667.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
 gi|406582691|ref|ZP_11057789.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
 gi|406584966|ref|ZP_11059962.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
 gi|406590349|ref|ZP_11064718.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
 gi|410937026|ref|ZP_11368888.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
 gi|415898393|ref|ZP_11551278.1| S4 domain protein [Enterococcus faecium E4453]
 gi|416130928|ref|ZP_11597591.1| S4 domain protein [Enterococcus faecium E4452]
 gi|424789435|ref|ZP_18216089.1| S4 domain protein [Enterococcus faecium V689]
 gi|424809970|ref|ZP_18235338.1| S4 domain protein [Enterococcus faecium S447]
 gi|424826042|ref|ZP_18250983.1| S4 domain protein [Enterococcus faecium R501]
 gi|424859457|ref|ZP_18283465.1| S4 domain protein [Enterococcus faecium R499]
 gi|424901153|ref|ZP_18324690.1| S4 domain protein [Enterococcus faecium R497]
 gi|424951728|ref|ZP_18366796.1| S4 domain protein [Enterococcus faecium R496]
 gi|424955098|ref|ZP_18369958.1| S4 domain protein [Enterococcus faecium R494]
 gi|424958662|ref|ZP_18373298.1| S4 domain protein [Enterococcus faecium R446]
 gi|424959601|ref|ZP_18374179.1| S4 domain protein [Enterococcus faecium P1986]
 gi|424964062|ref|ZP_18378203.1| S4 domain protein [Enterococcus faecium P1190]
 gi|424969217|ref|ZP_18382800.1| S4 domain protein [Enterococcus faecium P1140]
 gi|424971987|ref|ZP_18385384.1| S4 domain protein [Enterococcus faecium P1139]
 gi|424973331|ref|ZP_18386619.1| S4 domain protein [Enterococcus faecium P1137]
 gi|424977779|ref|ZP_18390764.1| S4 domain protein [Enterococcus faecium P1123]
 gi|424982082|ref|ZP_18394765.1| S4 domain protein [Enterococcus faecium ERV99]
 gi|424985815|ref|ZP_18398275.1| S4 domain protein [Enterococcus faecium ERV69]
 gi|424988378|ref|ZP_18400700.1| S4 domain protein [Enterococcus faecium ERV38]
 gi|424990629|ref|ZP_18402835.1| S4 domain protein [Enterococcus faecium ERV26]
 gi|424994834|ref|ZP_18406753.1| S4 domain protein [Enterococcus faecium ERV168]
 gi|424998820|ref|ZP_18410483.1| S4 domain protein [Enterococcus faecium ERV165]
 gi|425002663|ref|ZP_18414083.1| S4 domain protein [Enterococcus faecium ERV161]
 gi|425004807|ref|ZP_18416092.1| S4 domain protein [Enterococcus faecium ERV102]
 gi|425007879|ref|ZP_18418994.1| S4 domain protein [Enterococcus faecium ERV1]
 gi|425009763|ref|ZP_18420757.1| S4 domain protein [Enterococcus faecium E422]
 gi|425014536|ref|ZP_18425210.1| S4 domain protein [Enterococcus faecium E417]
 gi|425019156|ref|ZP_18429542.1| S4 domain protein [Enterococcus faecium C621]
 gi|425019565|ref|ZP_18429913.1| S4 domain protein [Enterococcus faecium C497]
 gi|425023876|ref|ZP_18433971.1| S4 domain protein [Enterococcus faecium C1904]
 gi|425031128|ref|ZP_18436271.1| S4 domain protein [Enterococcus faecium 515]
 gi|425036628|ref|ZP_18441370.1| S4 domain protein [Enterococcus faecium 514]
 gi|425039755|ref|ZP_18444259.1| S4 domain protein [Enterococcus faecium 513]
 gi|425043084|ref|ZP_18447353.1| S4 domain protein [Enterococcus faecium 511]
 gi|425046437|ref|ZP_18450453.1| S4 domain protein [Enterococcus faecium 510]
 gi|425048714|ref|ZP_18452605.1| S4 domain protein [Enterococcus faecium 509]
 gi|425052483|ref|ZP_18456088.1| S4 domain protein [Enterococcus faecium 506]
 gi|425061064|ref|ZP_18464329.1| S4 domain protein [Enterococcus faecium 503]
 gi|427395406|ref|ZP_18888328.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
           FB129-CNAB-4]
 gi|430821334|ref|ZP_19439945.1| S4 domain-containing protein [Enterococcus faecium E0045]
 gi|430824069|ref|ZP_19442636.1| S4 domain-containing protein [Enterococcus faecium E0120]
 gi|430829505|ref|ZP_19447598.1| S4 domain-containing protein [Enterococcus faecium E0269]
 gi|430831540|ref|ZP_19449591.1| S4 domain-containing protein [Enterococcus faecium E0333]
 gi|430833721|ref|ZP_19451732.1| S4 domain-containing protein [Enterococcus faecium E0679]
 gi|430837031|ref|ZP_19455007.1| S4 domain-containing protein [Enterococcus faecium E0680]
 gi|430839109|ref|ZP_19457051.1| S4 domain-containing protein [Enterococcus faecium E0688]
 gi|430844773|ref|ZP_19462670.1| S4 domain-containing protein [Enterococcus faecium E1050]
 gi|430846891|ref|ZP_19464745.1| S4 domain-containing protein [Enterococcus faecium E1133]
 gi|430853479|ref|ZP_19471207.1| S4 domain-containing protein [Enterococcus faecium E1258]
 gi|430856778|ref|ZP_19474462.1| S4 domain-containing protein [Enterococcus faecium E1392]
 gi|430859680|ref|ZP_19477289.1| S4 domain-containing protein [Enterococcus faecium E1552]
 gi|430862432|ref|ZP_19479749.1| S4 domain-containing protein [Enterococcus faecium E1573]
 gi|430867382|ref|ZP_19482376.1| S4 domain-containing protein [Enterococcus faecium E1574]
 gi|430869880|ref|ZP_19483035.1| S4 domain-containing protein [Enterococcus faecium E1575]
 gi|430963172|ref|ZP_19487464.1| S4 domain-containing protein [Enterococcus faecium E1576]
 gi|431011090|ref|ZP_19489834.1| S4 domain-containing protein [Enterococcus faecium E1578]
 gi|431237083|ref|ZP_19503226.1| S4 domain-containing protein [Enterococcus faecium E1622]
 gi|431264018|ref|ZP_19505906.1| S4 domain-containing protein [Enterococcus faecium E1623]
 gi|431290540|ref|ZP_19506675.1| S4 domain-containing protein [Enterococcus faecium E1626]
 gi|431382762|ref|ZP_19511355.1| S4 domain-containing protein [Enterococcus faecium E1627]
 gi|431523808|ref|ZP_19516833.1| S4 domain-containing protein [Enterococcus faecium E1634]
 gi|431536449|ref|ZP_19517409.1| S4 domain-containing protein [Enterococcus faecium E1731]
 gi|431743241|ref|ZP_19532121.1| S4 domain-containing protein [Enterococcus faecium E2071]
 gi|431745479|ref|ZP_19534323.1| S4 domain-containing protein [Enterococcus faecium E2134]
 gi|431747873|ref|ZP_19536637.1| S4 domain-containing protein [Enterococcus faecium E2297]
 gi|431754100|ref|ZP_19542765.1| S4 domain-containing protein [Enterococcus faecium E2883]
 gi|431768786|ref|ZP_19557219.1| S4 domain-containing protein [Enterococcus faecium E1321]
 gi|431770078|ref|ZP_19558481.1| S4 domain-containing protein [Enterococcus faecium E1644]
 gi|431774394|ref|ZP_19562702.1| S4 domain-containing protein [Enterococcus faecium E2369]
 gi|431777051|ref|ZP_19565308.1| S4 domain-containing protein [Enterococcus faecium E2560]
 gi|431781358|ref|ZP_19569506.1| S4 domain-containing protein [Enterococcus faecium E6012]
 gi|431784989|ref|ZP_19573024.1| S4 domain-containing protein [Enterococcus faecium E6045]
 gi|447913352|ref|YP_007394764.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
 gi|68196297|gb|EAN10726.1| RNA-binding S4 [Enterococcus faecium DO]
 gi|257813602|gb|EEV42360.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
 gi|257817418|gb|EEV44746.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
 gi|257821038|gb|EEV48172.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
 gi|257826560|gb|EEV53186.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
 gi|257829907|gb|EEV56514.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
 gi|260075275|gb|EEW63588.1| RNA binding protein S4 [Enterococcus faecium C68]
 gi|291589004|gb|EFF20828.1| S4 domain protein [Enterococcus faecium E1071]
 gi|291598776|gb|EFF29828.1| S4 domain protein [Enterococcus faecium U0317]
 gi|291602603|gb|EFF32818.1| S4 domain protein [Enterococcus faecium E1039]
 gi|291605614|gb|EFF35056.1| S4 domain protein [Enterococcus faecium E1162]
 gi|313587995|gb|EFR66840.1| S4 domain protein [Enterococcus faecium TX0133a01]
 gi|313592627|gb|EFR71472.1| S4 domain protein [Enterococcus faecium TX0133B]
 gi|313596563|gb|EFR75408.1| S4 domain protein [Enterococcus faecium TX0133A]
 gi|313599777|gb|EFR78620.1| S4 domain protein [Enterococcus faecium TX0133C]
 gi|313642721|gb|EFS07301.1| S4 domain protein [Enterococcus faecium TX0133a04]
 gi|313643554|gb|EFS08134.1| S4 domain protein [Enterococcus faecium TX0082]
 gi|364090061|gb|EHM32692.1| S4 domain protein [Enterococcus faecium E4453]
 gi|364093803|gb|EHM36039.1| S4 domain protein [Enterococcus faecium E4452]
 gi|378937787|gb|AFC62859.1| S4 domain protein [Enterococcus faecium Aus0004]
 gi|388533232|gb|AFK58424.1| ribosomal protein S4e [Enterococcus faecium DO]
 gi|402918203|gb|EJX38917.1| S4 domain protein [Enterococcus faecium S447]
 gi|402922115|gb|EJX42520.1| S4 domain protein [Enterococcus faecium V689]
 gi|402924711|gb|EJX44903.1| S4 domain protein [Enterococcus faecium R501]
 gi|402926489|gb|EJX46525.1| S4 domain protein [Enterococcus faecium R499]
 gi|402928949|gb|EJX48755.1| S4 domain protein [Enterococcus faecium R496]
 gi|402931322|gb|EJX50908.1| S4 domain protein [Enterococcus faecium R497]
 gi|402934985|gb|EJX54278.1| S4 domain protein [Enterococcus faecium R494]
 gi|402939559|gb|EJX58464.1| S4 domain protein [Enterococcus faecium R446]
 gi|402947476|gb|EJX65684.1| S4 domain protein [Enterococcus faecium P1190]
 gi|402949173|gb|EJX67254.1| S4 domain protein [Enterococcus faecium P1140]
 gi|402950115|gb|EJX68130.1| S4 domain protein [Enterococcus faecium P1986]
 gi|402956926|gb|EJX74349.1| S4 domain protein [Enterococcus faecium P1139]
 gi|402958967|gb|EJX76248.1| S4 domain protein [Enterococcus faecium P1137]
 gi|402961838|gb|EJX78833.1| S4 domain protein [Enterococcus faecium ERV99]
 gi|402964521|gb|EJX81295.1| S4 domain protein [Enterococcus faecium P1123]
 gi|402965066|gb|EJX81804.1| S4 domain protein [Enterococcus faecium ERV69]
 gi|402972077|gb|EJX88302.1| S4 domain protein [Enterococcus faecium ERV38]
 gi|402978932|gb|EJX94633.1| S4 domain protein [Enterococcus faecium ERV168]
 gi|402979117|gb|EJX94804.1| S4 domain protein [Enterococcus faecium ERV26]
 gi|402981857|gb|EJX97364.1| S4 domain protein [Enterococcus faecium ERV165]
 gi|402982846|gb|EJX98283.1| S4 domain protein [Enterococcus faecium ERV161]
 gi|402988452|gb|EJY03459.1| S4 domain protein [Enterococcus faecium ERV102]
 gi|402994304|gb|EJY08847.1| S4 domain protein [Enterococcus faecium ERV1]
 gi|402998603|gb|EJY12852.1| S4 domain protein [Enterococcus faecium E417]
 gi|402999201|gb|EJY13403.1| S4 domain protein [Enterococcus faecium C621]
 gi|403002017|gb|EJY16030.1| S4 domain protein [Enterococcus faecium E422]
 gi|403008484|gb|EJY21988.1| S4 domain protein [Enterococcus faecium C1904]
 gi|403011116|gb|EJY24445.1| S4 domain protein [Enterococcus faecium C497]
 gi|403014169|gb|EJY27187.1| S4 domain protein [Enterococcus faecium 514]
 gi|403014741|gb|EJY27711.1| S4 domain protein [Enterococcus faecium 513]
 gi|403016297|gb|EJY29121.1| S4 domain protein [Enterococcus faecium 515]
 gi|403021323|gb|EJY33790.1| S4 domain protein [Enterococcus faecium 511]
 gi|403024300|gb|EJY36470.1| S4 domain protein [Enterococcus faecium 510]
 gi|403030029|gb|EJY41749.1| S4 domain protein [Enterococcus faecium 509]
 gi|403034275|gb|EJY45738.1| S4 domain protein [Enterococcus faecium 506]
 gi|403042001|gb|EJY52977.1| S4 domain protein [Enterococcus faecium 503]
 gi|404453851|gb|EKA00883.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
 gi|404457681|gb|EKA04211.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
 gi|404463185|gb|EKA08881.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
 gi|404469418|gb|EKA14224.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
 gi|410734619|gb|EKQ76538.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
 gi|425723906|gb|EKU86792.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
           FB129-CNAB-4]
 gi|430438597|gb|ELA49014.1| S4 domain-containing protein [Enterococcus faecium E0045]
 gi|430441453|gb|ELA51550.1| S4 domain-containing protein [Enterococcus faecium E0120]
 gi|430480944|gb|ELA58115.1| S4 domain-containing protein [Enterococcus faecium E0269]
 gi|430481423|gb|ELA58579.1| S4 domain-containing protein [Enterococcus faecium E0333]
 gi|430486126|gb|ELA62994.1| S4 domain-containing protein [Enterococcus faecium E0679]
 gi|430487812|gb|ELA64520.1| S4 domain-containing protein [Enterococcus faecium E0680]
 gi|430491106|gb|ELA67588.1| S4 domain-containing protein [Enterococcus faecium E0688]
 gi|430496204|gb|ELA72309.1| S4 domain-containing protein [Enterococcus faecium E1050]
 gi|430538445|gb|ELA78737.1| S4 domain-containing protein [Enterococcus faecium E1133]
 gi|430540560|gb|ELA80762.1| S4 domain-containing protein [Enterococcus faecium E1258]
 gi|430543217|gb|ELA83292.1| S4 domain-containing protein [Enterococcus faecium E1552]
 gi|430543891|gb|ELA83943.1| S4 domain-containing protein [Enterococcus faecium E1392]
 gi|430549010|gb|ELA88857.1| S4 domain-containing protein [Enterococcus faecium E1573]
 gi|430550393|gb|ELA90189.1| S4 domain-containing protein [Enterococcus faecium E1574]
 gi|430555597|gb|ELA95134.1| S4 domain-containing protein [Enterococcus faecium E1576]
 gi|430559257|gb|ELA98616.1| S4 domain-containing protein [Enterococcus faecium E1575]
 gi|430560112|gb|ELA99418.1| S4 domain-containing protein [Enterococcus faecium E1578]
 gi|430572647|gb|ELB11497.1| S4 domain-containing protein [Enterococcus faecium E1622]
 gi|430576454|gb|ELB15105.1| S4 domain-containing protein [Enterococcus faecium E1623]
 gi|430581133|gb|ELB19580.1| S4 domain-containing protein [Enterococcus faecium E1627]
 gi|430582640|gb|ELB21062.1| S4 domain-containing protein [Enterococcus faecium E1626]
 gi|430584766|gb|ELB23080.1| S4 domain-containing protein [Enterococcus faecium E1634]
 gi|430594936|gb|ELB32888.1| S4 domain-containing protein [Enterococcus faecium E1731]
 gi|430607075|gb|ELB44403.1| S4 domain-containing protein [Enterococcus faecium E2071]
 gi|430610235|gb|ELB47387.1| S4 domain-containing protein [Enterococcus faecium E2134]
 gi|430614749|gb|ELB51720.1| S4 domain-containing protein [Enterococcus faecium E2297]
 gi|430620023|gb|ELB56826.1| S4 domain-containing protein [Enterococcus faecium E2883]
 gi|430628654|gb|ELB65088.1| S4 domain-containing protein [Enterococcus faecium E1321]
 gi|430634143|gb|ELB70278.1| S4 domain-containing protein [Enterococcus faecium E2369]
 gi|430635831|gb|ELB71910.1| S4 domain-containing protein [Enterococcus faecium E1644]
 gi|430639992|gb|ELB75846.1| S4 domain-containing protein [Enterococcus faecium E2560]
 gi|430648545|gb|ELB83951.1| S4 domain-containing protein [Enterococcus faecium E6045]
 gi|430649719|gb|ELB85087.1| S4 domain-containing protein [Enterococcus faecium E6012]
 gi|445189061|gb|AGE30703.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
          Length = 260

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++   + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|425058743|ref|ZP_18462119.1| S4 domain protein [Enterococcus faecium 504]
 gi|431446024|ref|ZP_19513706.1| S4 domain-containing protein [Enterococcus faecium E1630]
 gi|431760585|ref|ZP_19549182.1| S4 domain-containing protein [Enterococcus faecium E3346]
 gi|403037598|gb|EJY48863.1| S4 domain protein [Enterococcus faecium 504]
 gi|430585668|gb|ELB23940.1| S4 domain-containing protein [Enterococcus faecium E1630]
 gi|430623670|gb|ELB60348.1| S4 domain-containing protein [Enterococcus faecium E3346]
          Length = 260

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYKQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++   + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|331091119|ref|ZP_08339961.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405341|gb|EGG84877.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 251

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 9/246 (3%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K +LE++R A  +  V +SDFL    L       +     +    GGY  +ER ++    
Sbjct: 10  KRLLELSRVAYQKGIVTYSDFLNLNELNILHTTPKNEFFTQYETFGGYSDSER-QMVAFL 68

Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL      P  V  +S       +  SH D+LG+IL  GI R K+GDI+L    G  +
Sbjct: 69  PDALYYAHFYPIKVLKISPLQKKFAESLSHRDYLGAILNLGIDRCKLGDILLID--GDAY 126

Query: 199 LVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           L V E LAD++  +L ++ + SV           Y P   +  K   AS+R+D+L S  F
Sbjct: 127 LFVQESLADFICRNLTRIRHTSVYVEVEDEQTFSYTPA-IEEIKGTVASVRLDSLLSLVF 185

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAV 316
             SRSKLV LI  G V VN   +T N   ++  DIVSV   GR +  G ++ T+KG++ V
Sbjct: 186 PASRSKLVPLIEGGRVFVNGKLITTNSYNVKENDIVSVRKLGRFRYKGVLSQTKKGRYYV 245

Query: 317 ELIQYL 322
            L +Y+
Sbjct: 246 LLEKYI 251


>gi|427392306|ref|ZP_18886311.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
           51267]
 gi|425731573|gb|EKU94389.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
           51267]
          Length = 260

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 7/247 (2%)

Query: 76  NAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERC 135
           N  + +   ++  RR S       + FL P         + +  D++    GG+P AER 
Sbjct: 11  NEKDYIDLAVDWVRRVSDTYAPYLTSFLDPRQAYILATIVAQYPDLQVSYWGGHPGAERQ 70

Query: 136 RLSVGHPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
           R S+ +PE L +     DI A   I     F   SHG  +GSILGTGI R+K+GDII   
Sbjct: 71  R-SLIYPEYLPTHELSYDI-AGFEIDYPHKFNKLSHGQIMGSILGTGIKRDKLGDIISDS 128

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
            +  QF +   L+D++   +++VG+  V    +    +          + I +SLR+D+ 
Sbjct: 129 GRW-QFFIDQGLSDFITIQVDRVGSSPVRLYSLDQTDIIDNQEDWTVDQVIVSSLRLDSF 187

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRK 311
            ++   L+RSK  +L+    V++N+  V + G  L   D+VSV G GR++ +  +  T+K
Sbjct: 188 IASCLNLARSKAKSLVDQDRVKLNFGQVDQAGLVLEEEDMVSVRGFGRLQFLRAVKQTKK 247

Query: 312 GKFAVEL 318
            K  +E+
Sbjct: 248 DKVLIEV 254


>gi|398304131|ref|ZP_10507717.1| shape determination protein [Bacillus vallismortis DV1-F-3]
          Length = 257

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+   ADV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFFGGYDRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           + +PE +T   SD ++  A  +     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILYPEYITPEESDFEL-QAFHVRYAEKFVSVDHRALLGALMGIGLKRQKFGDIVF-SETA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|350265853|ref|YP_004877160.1| S4 domain-containing protein [Bacillus subtilis subsp. spizizenii
           TU-B-10]
 gi|349598740|gb|AEP86528.1| S4 domain protein [Bacillus subtilis subsp. spizizenii TU-B-10]
          Length = 257

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 154
           +DFL P   +E ++  A+   ADV     GGY +AER R ++ +PE +T   SD ++  A
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYITPEESDFEL-QA 89

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            ++     F    H   LG+++G G+ R+K GDI+   E   Q +V  + AD++   L +
Sbjct: 90  FNVRYAEKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
            G  +VS  +I L  L       +      +SLR+DA+ ++  + SR K   L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNW  V      +  GD++S+ G GR  + +I   T+K K+ V
Sbjct: 209 VNWKVVEDPSYMVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251


>gi|257899130|ref|ZP_05678783.1| RNA binding protein S4 [Enterococcus faecium Com15]
 gi|293571725|ref|ZP_06682744.1| S4 domain protein [Enterococcus faecium E980]
 gi|430840726|ref|ZP_19458649.1| S4 domain-containing protein [Enterococcus faecium E1007]
 gi|431066287|ref|ZP_19493910.1| S4 domain-containing protein [Enterococcus faecium E1604]
 gi|431099331|ref|ZP_19496497.1| S4 domain-containing protein [Enterococcus faecium E1613]
 gi|431594952|ref|ZP_19522058.1| S4 domain-containing protein [Enterococcus faecium E1861]
 gi|431738282|ref|ZP_19527227.1| S4 domain-containing protein [Enterococcus faecium E1972]
 gi|431741883|ref|ZP_19530783.1| S4 domain-containing protein [Enterococcus faecium E2039]
 gi|257837042|gb|EEV62116.1| RNA binding protein S4 [Enterococcus faecium Com15]
 gi|291608182|gb|EFF37485.1| S4 domain protein [Enterococcus faecium E980]
 gi|430494932|gb|ELA71150.1| S4 domain-containing protein [Enterococcus faecium E1007]
 gi|430568326|gb|ELB07374.1| S4 domain-containing protein [Enterococcus faecium E1604]
 gi|430570832|gb|ELB09771.1| S4 domain-containing protein [Enterococcus faecium E1613]
 gi|430590878|gb|ELB28924.1| S4 domain-containing protein [Enterococcus faecium E1861]
 gi|430597720|gb|ELB35503.1| S4 domain-containing protein [Enterococcus faecium E1972]
 gi|430601036|gb|ELB38658.1| S4 domain-containing protein [Enterococcus faecium E2039]
          Length = 260

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++   + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|430826927|ref|ZP_19445095.1| S4 domain-containing protein [Enterococcus faecium E0164]
 gi|430444473|gb|ELA54311.1| S4 domain-containing protein [Enterococcus faecium E0164]
          Length = 260

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 119 ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
           +D++ +  GGY QAER  C +   + E +  D +  A   I     F   SHG  LG+++
Sbjct: 55  SDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEIHYPSKFASLSHGKILGTLV 113

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
           GTGI R   GDII  G++  Q  +  E+  ++   + K+G V+V     P+   E   P+
Sbjct: 114 GTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTKIGKVAVRLE--PIKYTEMIMPK 170

Query: 237 ---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
              T+   T+ +S+R+D++ S  + +SR +   LI  G V+VNWT  T+    L   DI+
Sbjct: 171 DSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVKVNWTENTRPDFVLELLDII 229

Query: 294 SVSGKGRIKIGEIN-STRKGKFAV 316
           SV G GR++I E+   T+K K+ V
Sbjct: 230 SVRGYGRVQIQELEGKTKKEKYRV 253


>gi|423615839|ref|ZP_17591673.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
 gi|401260376|gb|EJR66549.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
          Length = 255

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAER-RRALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHWQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           +V  E+  Y+  +L+ +G V VS + +    +   +E    KS     +SLR+D + +  
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQTHETWGEKSGTV--SSLRLDVMLAEM 188

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
             +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ 
Sbjct: 189 LHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWR 248

Query: 316 V 316
           +
Sbjct: 249 I 249


>gi|386758263|ref|YP_006231479.1| shape determination protein [Bacillus sp. JS]
 gi|384931545|gb|AFI28223.1| shape determination protein [Bacillus sp. JS]
          Length = 257

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 12/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
           +   LE  R    +  +  +DFL P   +E ++  A+    DV     GGY +AER R +
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVILTAVTGQTDVGLAFSGGYDRAERKR-A 71

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           + +PE +T   SD ++  A  +     F    H   LG+++G G+ R+K GDI+   E  
Sbjct: 72  ILYPEYITPEESDFEL-QAFHVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SESA 129

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  + AD++   L + G  +VS  +I L  L       +      +SLR+DA+ ++
Sbjct: 130 VQLIVSADTADFVAAQLTQAGKATVSLEKIGLSDLNIPAIDVEIRDDTVSSLRLDAVCAS 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
             + SR K   L+ NG V+VNW  V      +  GD++S+ G GR  + +I   T+K K+
Sbjct: 190 MSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLSKIEGKTKKDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|227550465|ref|ZP_03980514.1| ribosomal protein S4e [Enterococcus faecium TX1330]
 gi|257888493|ref|ZP_05668146.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
 gi|257897132|ref|ZP_05676785.1| RNA binding protein S4 [Enterococcus faecium Com12]
 gi|293377355|ref|ZP_06623559.1| S4 domain protein [Enterococcus faecium PC4.1]
 gi|424763055|ref|ZP_18190534.1| S4 domain protein [Enterococcus faecium TX1337RF]
 gi|431031532|ref|ZP_19490706.1| S4 domain-containing protein [Enterococcus faecium E1590]
 gi|431751286|ref|ZP_19539977.1| S4 domain-containing protein [Enterococcus faecium E2620]
 gi|431758414|ref|ZP_19547041.1| S4 domain-containing protein [Enterococcus faecium E3083]
 gi|431763887|ref|ZP_19552435.1| S4 domain-containing protein [Enterococcus faecium E3548]
 gi|227180366|gb|EEI61338.1| ribosomal protein S4e [Enterococcus faecium TX1330]
 gi|257824547|gb|EEV51479.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
 gi|257833697|gb|EEV60118.1| RNA binding protein S4 [Enterococcus faecium Com12]
 gi|292644047|gb|EFF62153.1| S4 domain protein [Enterococcus faecium PC4.1]
 gi|402423522|gb|EJV55735.1| S4 domain protein [Enterococcus faecium TX1337RF]
 gi|430564942|gb|ELB04117.1| S4 domain-containing protein [Enterococcus faecium E1590]
 gi|430615726|gb|ELB52669.1| S4 domain-containing protein [Enterococcus faecium E2620]
 gi|430617472|gb|ELB54345.1| S4 domain-containing protein [Enterococcus faecium E3083]
 gi|430621711|gb|ELB58463.1| S4 domain-containing protein [Enterococcus faecium E3548]
          Length = 260

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           ++FL P         + + +D++ +  GGY QAER  C +   + E +  D +  A   I
Sbjct: 36  TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG+++GTGI R   GDII  G++  Q  +  E+  ++   + K+G 
Sbjct: 95  HYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDR-WQVFIANEVDHFVAAQVTKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V+V     P+   E   P+   T+   T+ +S+R+D++ S  + +SR +   LI  G V+
Sbjct: 154 VAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAGKVK 210

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNWT  T+    L   DI+SV G GR++I E+   T+K K+ V
Sbjct: 211 VNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253


>gi|414083300|ref|YP_006992008.1| S4 domain-containing protein [Carnobacterium maltaromaticum LMA28]
 gi|412996884|emb|CCO10693.1| S4 domain protein [Carnobacterium maltaromaticum LMA28]
          Length = 259

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 12/225 (5%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALT--SDPDIVAA 154
           +DFL P      M  +E L    D+K    GGY  AER R+ +  P+  T   +   +  
Sbjct: 36  TDFLDP----RQMYIVESLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
             I     F   SH   LG+++  G+ RE  GDI+  GE+  QF V   + +Y+   ++K
Sbjct: 91  CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVFDGERW-QFFVDVGMKNYVENQVDK 149

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           +GNVSV         +          +   +S+R+DA+ ++ FK+SR +   LI  G V+
Sbjct: 150 IGNVSVRIETRDYTEIITPIDDWTLVQDTVSSMRLDAIIASIFKISRQRAKQLIEAGKVK 209

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           +NW    +    L   DIVSV G GRI+I EI   T+K K+ ++ 
Sbjct: 210 LNWAEQLRPDFELGLLDIVSVRGYGRIQIKEIEGKTKKDKWRIQF 254


>gi|309778070|ref|ZP_07673009.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914164|gb|EFP59965.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 250

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 13/252 (5%)

Query: 77  AIEEVKHILEMARRASS---RREVLHSDFLTPPVLKESMMALEKLADVKAV--AQGGYPQ 131
           AIE  +   E  RR      R E  +   +TP    + +   E+    + +   QGGY Q
Sbjct: 4   AIEHYRGNEEFVRRLQDQIDRMERWNRIVVTPFFSPDQIQIAERFCGHRILYRKQGGYAQ 63

Query: 132 AERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           AERCRL+    E     P +    +I+ +FG    +H D LG+++  GI REK GD+I+ 
Sbjct: 64  AERCRLAFLPWEEDVDIPILHVKANISSSFG--QITHRDVLGALMHLGIEREKTGDLIVD 121

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEASLRVD 250
            +      V P++ +YL  +L K+    +       + + YEP    ++KT I +SLR+D
Sbjct: 122 -QNTVHMFVDPDIGNYLCANLTKIRRCKIQLEESDEV-ISYEPD--IAYKTLIVSSLRLD 177

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INST 309
            L SA   +SR+K    I  G V+VN   + +         ++S+ G GR ++ E +  T
Sbjct: 178 TLVSALSNMSRAKAAACIRAGQVKVNHVVLEQTSHLCDNTCVISIRGHGRFQLKEVVKET 237

Query: 310 RKGKFAVELIQY 321
           +KG   +E+  Y
Sbjct: 238 KKGNLVIEVGMY 249


>gi|325571367|ref|ZP_08146867.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
           12755]
 gi|420262036|ref|ZP_14764679.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
 gi|325155843|gb|EGC68039.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
           12755]
 gi|394771058|gb|EJF50842.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
          Length = 260

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)

Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 155
           +DFL P    + ES+  + +  D+     GGY  AER  C +   + E  T + D+    
Sbjct: 36  TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLIYPDYYEPTTDEFDM-TLF 92

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           +I     F   SHG  LG+++GTG+ RE  GDI+  GE   Q  V  E++ ++   ++K+
Sbjct: 93  TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEIW-QVFVATEVSHFIQLQVDKI 151

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
           GNVSV         L          +   +SLR+D + SA + +SR +   LI +G V+V
Sbjct: 152 GNVSVRLEETKYTDLIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           NWT   +    L   DI+SV G GRI+I  +  T K
Sbjct: 212 NWTEALRPDFVLDLLDIISVRGFGRIQIQGLEGTTK 247


>gi|30021986|ref|NP_833617.1| RNA binding protein [Bacillus cereus ATCC 14579]
 gi|296504392|ref|YP_003666092.1| RNA binding protein [Bacillus thuringiensis BMB171]
 gi|423585693|ref|ZP_17561780.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
 gi|423628992|ref|ZP_17604741.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
 gi|423641024|ref|ZP_17616642.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
 gi|423656758|ref|ZP_17632057.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
 gi|29897542|gb|AAP10818.1| RNA binding protein [Bacillus cereus ATCC 14579]
 gi|296325444|gb|ADH08372.1| RNA binding protein [Bacillus thuringiensis BMB171]
 gi|401233039|gb|EJR39535.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
 gi|401268537|gb|EJR74585.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
 gi|401280085|gb|EJR86007.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
 gi|401290499|gb|EJR96193.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
          Length = 255

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS   +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|384181712|ref|YP_005567474.1| S4 domain-containing protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|324327796|gb|ADY23056.1| S4 domain protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 255

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G   QAER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCT---RIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS +   R  +L ++ E    KS     +SLR+D + + 
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQREKILQIQ-ETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
              +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|154504401|ref|ZP_02041139.1| hypothetical protein RUMGNA_01905 [Ruminococcus gnavus ATCC 29149]
 gi|336432353|ref|ZP_08612188.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
           2_1_58FAA]
 gi|153795330|gb|EDN77750.1| S4 domain protein [Ruminococcus gnavus ATCC 29149]
 gi|336018690|gb|EGN48427.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
           2_1_58FAA]
          Length = 262

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 20/257 (7%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           K + E++  A SR  V +SDFL    L     M  ++L   K V  GGY  AER +++  
Sbjct: 10  KRLSELSNLAYSRDIVTYSDFLNLNELNILHSMPKDRLY-TKFVTFGGYGLAER-QMAAF 67

Query: 141 HPEALTSDPDI-VAALSITGNFGF-------------QPCSHGDFLGSILGTGIAREKIG 186
            P+AL+   ++   +    G++ F             +  +H D+LG+ILG GI R KIG
Sbjct: 68  LPDALSLRGEMSWCSEEEWGDYPFDILRISPLHAKYAEQLTHRDYLGTILGLGIERAKIG 127

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 246
           DI++ G     F V   L  +L+  L +V +  V    I     +YEP   +   T+ AS
Sbjct: 128 DILVDGTDAVVF-VHRTLQSFLMEELTRVRHTQVLVKEISREDFQYEPKYEEIRGTV-AS 185

Query: 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GE 305
           +R+D+L S  F  SR+KL  LI    V VN   +T N   L+  D++SV G G+ +  G 
Sbjct: 186 VRLDSLLSLAFSASRTKLSGLIEGAKVFVNGKLITTNSYQLKENDVISVRGYGKFRYNGT 245

Query: 306 INSTRKGKFAVELIQYL 322
              T+K +  V + +Y+
Sbjct: 246 GAKTKKNRIYVSVYKYI 262


>gi|392531408|ref|ZP_10278545.1| cell shape determination protein [Carnobacterium maltaromaticum
           ATCC 35586]
          Length = 259

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 12/225 (5%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALT--SDPDIVAA 154
           +DFL P      M  +E L    D+K    GGY  AER R+ +  P+  T   +   +  
Sbjct: 36  TDFLDP----RQMYIVETLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
             I     F   SH   LG+++  G+ RE  GDI+  GE+  QF V   + +Y+   ++K
Sbjct: 91  CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVFDGERW-QFFVDVGMKNYVENQVDK 149

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           +GNVSV         +          +   +S+R+DA+ ++ FK+SR +   LI  G V+
Sbjct: 150 IGNVSVRIETRDYTEIITPIDDWTLVQDTVSSMRLDAIIASIFKISRQRAKQLIEAGKVK 209

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           +NW    +    L   DIVSV G GRI+I EI   T+K K+ ++ 
Sbjct: 210 LNWAEQLRPDFELGLLDIVSVRGYGRIQIKEIEGKTKKDKWRIQF 254


>gi|241895685|ref|ZP_04782981.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
 gi|241871052|gb|EER74803.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
          Length = 261

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 4/222 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
           ++FL P  +      + +  D+K    GGY  AE  RL +   + E +  D D++  + I
Sbjct: 36  TNFLNPREIYILKTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYEPIQDDFDLMV-IQI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LG+ +  GIAR+ IGDII    +   F+    +  +++  L+ +G 
Sbjct: 95  KYPEKFATLHHSTILGTFMHNGIARQSIGDIIKGEAETWYFVATKAIGTFILRHLDHIGK 154

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
             V    +    +           T  +SLR+D++ + G+ +SR+    +I +  VRVNW
Sbjct: 155 AKVRFEEVMANQIVVVDDEWTIINTTVSSLRLDSIVANGYNISRNHAKQMIEHDLVRVNW 214

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           T + K    L   D+VSV   GR+KI E+N  T+K K+ + +
Sbjct: 215 TDINKPDYVLAVNDLVSVRKYGRLKIDELNGLTKKDKWRITM 256


>gi|89101248|ref|ZP_01174071.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
 gi|89084041|gb|EAR63219.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
          Length = 257

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
           +DFL P   +   M + + + VK    GG    ER R ++ +P+  T D +  +      
Sbjct: 34  TDFLDPREQQIVKMIVGEHSGVKLRLFGGTEGTERKR-ALLYPKYFTPDEEEFSITLFEI 92

Query: 160 NF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
           N+   F    H   LGS++  G+ R K GDI +Q E+ AQF V  E+ DY+   LE +G 
Sbjct: 93  NYPSKFVSIEHPQILGSLMALGLKRGKFGDITVQDER-AQFFVSREIEDYVSMQLESIGK 151

Query: 218 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            SV+  ++PL  A+       +S  ++ +SLR+DA+ SA + +SR K    +  G V+VN
Sbjct: 152 ASVTLKKLPLEKAITAAGAWEESSASV-SSLRLDAVISAIYNISRQKSQLFVQQGLVKVN 210

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           W  V          D++SV GKGR KI E+   T+K K+ +
Sbjct: 211 WGQVEDPSFVCGEADVLSVRGKGRSKIIEVEGKTKKDKWRI 251


>gi|229174564|ref|ZP_04302094.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
 gi|228608869|gb|EEK66161.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
          Length = 241

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|157692221|ref|YP_001486683.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
 gi|157680979|gb|ABV62123.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
          Length = 258

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +L   + A  +  +  +DFL P     +   ++   ++  +  GGY  AER R  + 
Sbjct: 16  VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI- 74

Query: 141 HPEAL---TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +PE L   T D ++ +   +     F    H   LGS++GTG+ R+K GD++   E+  Q
Sbjct: 75  YPEYLEPATQDAEL-SYFQVNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLF-SEEDVQ 132

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           F+   ++AD++   L  VG  SVS   I    L+    +T   +   +SLR+DA+ +A  
Sbjct: 133 FICTSDVADFVRAQLTHVGRASVSLEEITQADLKPVISKTDIKEDTISSLRLDAVCAAIS 192

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           + SR K   L+ NG V+VNW        T+  GD +SV G GR  +  I+  T+K KF V
Sbjct: 193 RQSRQKAQLLVKNGLVKVNWKVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252


>gi|111075038|gb|ABH04885.1| uncharacterized conserved protein ylmH [Heliobacillus mobilis]
          Length = 263

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 21/252 (8%)

Query: 79  EEVKHILEMAR--RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR 136
           E++  I+++A   R SS+++V  +DFL P +LK +M  L  L DV  +  GGYP+AER R
Sbjct: 19  EKMARIIDLAELCRRSSKQQV--TDFLEPFLLKTAMDILRGLDDVSVLDDGGYPEAERKR 76

Query: 137 LSV--GHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           L +  G  E     PD  +   +    G      H D+LGS+LG GI REK+GD+ L  +
Sbjct: 77  LVLLPGEWEL----PDSRSCWLMGEVRGEVDKIGHRDYLGSLLGLGIRREKMGDLKLT-K 131

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP----RTKSFKTIEASLRV 249
           KG   LV  ++A Y+     +V    +S      L    E P    + +      ASLR 
Sbjct: 132 KGCAVLVDRDVAAYVEAHWNQVQRFPLSVR----LGDGDEKPDFIEKGEEKSVTVASLRF 187

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS- 308
           DA+ +A + LSRSK    IS G +RVN    +         DI+S+ G GR  + EI   
Sbjct: 188 DAIVAAIWHLSRSKADEAISRGLLRVNGLETSDGSRMASVKDILSLRGFGRAILREIGGP 247

Query: 309 TRKGKFAVELIQ 320
           T+KG+  + + Q
Sbjct: 248 TKKGRIRITIWQ 259


>gi|339448178|ref|ZP_08651734.1| cell division protein [Lactobacillus fructivorans KCTC 3543]
          Length = 263

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 11/198 (5%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           GGY  AE  R  + +P+     P++    +A + I     F    H   LGS++G+GI R
Sbjct: 65  GGYKDAEMKR-GIIYPDYF--HPEVKDYRLALVEIEYPEKFASIHHNQVLGSLMGSGIER 121

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFK 241
           + +GDI+  G++  QF+   E+  YL   ++++G V V+   + L  + + E     SF 
Sbjct: 122 KVLGDILTDGDR-FQFICEQEMVGYLTQEVDRIGRVKVNLKEVNLSEMIQGENDWVTSFV 180

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
           T+  S R+D + S GF++SRS   +L+ +  VR+NW   TK    ++  D++SV G GRI
Sbjct: 181 TL-PSFRLDVVISIGFRISRSVAKSLVEHEKVRLNWFEFTKPNYEIKVSDMISVRGYGRI 239

Query: 302 K-IGEINSTRKGKFAVEL 318
           + +G    ++KGK   EL
Sbjct: 240 RVVGYNGHSKKGKLKAEL 257


>gi|423649759|ref|ZP_17625329.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
 gi|401283039|gb|EJR88936.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
          Length = 255

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  D+     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS   +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|365159325|ref|ZP_09355506.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|423412299|ref|ZP_17389419.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
 gi|423426032|ref|ZP_17403063.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
 gi|423431916|ref|ZP_17408920.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
 gi|423503426|ref|ZP_17480018.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
 gi|363625323|gb|EHL76364.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|401104367|gb|EJQ12344.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
 gi|401110779|gb|EJQ18678.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
 gi|401116672|gb|EJQ24510.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
 gi|402459647|gb|EJV91384.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
          Length = 255

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS   +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|138894669|ref|YP_001125122.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
 gi|196247716|ref|ZP_03146418.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
 gi|134266182|gb|ABO66377.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
 gi|196212500|gb|EDY07257.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
          Length = 257

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 7/242 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +LE     S +     +DFL P   +     +    DV+    GG P AER R  + 
Sbjct: 15  IDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLY 74

Query: 141 HP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
            P  E    D DIV   ++     F    H D LG+++  G+ R K GDI++QG +  QF
Sbjct: 75  PPYIEPDEGDYDIVL-FAVRYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQGGE-IQF 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
               E+ADY+   +E +G   V+   +PL  A+  E    +   T+ +SLR+DA+ +  F
Sbjct: 133 FAAAEVADYIRLHVETIGKARVTLEPLPLSAAMPIEETWQEGTVTV-SSLRLDAVLAQAF 191

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           +L+R K   L+ +G V+VNW  V K       GD++S  G GR K+  +   T+K ++ V
Sbjct: 192 RLARDKARTLVESGLVKVNWRVVDKPDFVCGPGDVLSARGFGRCKLFSVEGPTKKERWLV 251

Query: 317 EL 318
            +
Sbjct: 252 RI 253


>gi|228987042|ref|ZP_04147167.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772636|gb|EEM21077.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 241

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G   QAER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|423582107|ref|ZP_17558218.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
 gi|423635330|ref|ZP_17610983.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
 gi|401212986|gb|EJR19727.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
 gi|401278081|gb|EJR84017.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
          Length = 255

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS   +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEKILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|229075655|ref|ZP_04208637.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
 gi|229098368|ref|ZP_04229313.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
 gi|229104461|ref|ZP_04235128.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
 gi|229117394|ref|ZP_04246770.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
 gi|407706356|ref|YP_006829941.1| cytochrome c oxidase subunit II [Bacillus thuringiensis MC28]
 gi|423378250|ref|ZP_17355534.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
 gi|423441371|ref|ZP_17418277.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
 gi|423448403|ref|ZP_17425282.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
 gi|423464445|ref|ZP_17441213.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
 gi|423533787|ref|ZP_17510205.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
 gi|423540957|ref|ZP_17517348.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
 gi|423547195|ref|ZP_17523553.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
 gi|423623023|ref|ZP_17598801.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
 gi|228666004|gb|EEL21470.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
 gi|228678903|gb|EEL33113.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
 gi|228684985|gb|EEL38918.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
 gi|228707431|gb|EEL59622.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
 gi|401128997|gb|EJQ36680.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
 gi|401172145|gb|EJQ79366.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
 gi|401178916|gb|EJQ86089.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
 gi|401259796|gb|EJR65970.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
 gi|401636516|gb|EJS54270.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
 gi|402418032|gb|EJV50332.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
 gi|402420712|gb|EJV52983.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
 gi|402464006|gb|EJV95706.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
 gi|407384041|gb|AFU14542.1| RNA-binding S4 domain protein [Bacillus thuringiensis MC28]
          Length = 255

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAER-RRALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           +V  E+  Y+  +L+ +G V VS + +    +   +E    KS     +SLR+D + +  
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQTHETWGEKSGTV--SSLRLDVMLAEM 188

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
             +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ 
Sbjct: 189 LHISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWR 248

Query: 316 V 316
           +
Sbjct: 249 I 249


>gi|229086462|ref|ZP_04218634.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
 gi|228696779|gb|EEL49592.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
          Length = 257

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V   LE  + A    +V  +DFL P   +     +    D      G  P+AER R ++ 
Sbjct: 15  VDKALEWKQMAEEYHQVKLTDFLDPRQQQIVATIIGNQGDAILKFYGVAPKAERKR-ALI 73

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P  L  + +   +  L I     F    H   LGS +  G+ REK GDI+LQ E  AQ 
Sbjct: 74  YPNYLDLNEEEFQIEVLEIDYPSKFYSLEHRQILGSFMSLGLTREKCGDILLQ-ENRAQI 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+A Y+  +L+ +G + VS + +    +L L+ E    K      +SLR+D + + 
Sbjct: 133 VVAKEVASYIEMNLQSIGKMKVSLSSVQADRILRLQEE---WKEQSGTVSSLRLDVVIAE 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
              LSR K+  LI NG V+VNW TV +       GD+ S+ G GR K+  +   T++ K+
Sbjct: 190 MLHLSRQKVQPLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKW 249

Query: 315 AV 316
            V
Sbjct: 250 RV 251


>gi|42782990|ref|NP_980237.1| S4 domain-containing protein [Bacillus cereus ATCC 10987]
 gi|42738917|gb|AAS42845.1| S4 domain protein [Bacillus cereus ATCC 10987]
          Length = 255

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G   QAER R  + 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGHGRSKLFSVEGRTKRDKWRI 249


>gi|402555979|ref|YP_006597250.1| S4 domain-containing protein [Bacillus cereus FRI-35]
 gi|401797189|gb|AFQ11048.1| S4 domain protein [Bacillus cereus FRI-35]
          Length = 255

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G   QAER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|206970953|ref|ZP_03231904.1| S4 domain protein [Bacillus cereus AH1134]
 gi|218235237|ref|YP_002368697.1| S4 domain-containing protein [Bacillus cereus B4264]
 gi|228960115|ref|ZP_04121779.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047582|ref|ZP_04193172.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
 gi|229111367|ref|ZP_04240920.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
 gi|229129175|ref|ZP_04258148.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
 gi|229146469|ref|ZP_04274840.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
 gi|229152095|ref|ZP_04280290.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
 gi|206733725|gb|EDZ50896.1| S4 domain protein [Bacillus cereus AH1134]
 gi|218163194|gb|ACK63186.1| S4 domain protein [Bacillus cereus B4264]
 gi|228631444|gb|EEK88078.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
 gi|228637102|gb|EEK93561.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
 gi|228654412|gb|EEL10277.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
 gi|228672143|gb|EEL27434.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
 gi|228723829|gb|EEL75184.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
 gi|228799631|gb|EEM46584.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 241

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS   +     L+ +    +   T+ +SLR+D + +    LSR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEMLHLSRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|423612112|ref|ZP_17587973.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
 gi|401247119|gb|EJR53463.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
          Length = 255

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+  Y+  +L+ +G V V+ + I +  +     +        +SLR+D L +    
Sbjct: 131 AVAKEVVSYIEMNLQSIGKVKVTLSPIQVEQILQVSEKWGEKSGTVSSLRLDVLLAEMLH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +SR K   LI NG V+VNW TV +       GD+ S+ G GR K+  +   T++ K+ V
Sbjct: 191 ISRQKAQPLIKNGLVKVNWKTVEQTSYECFPGDVFSIRGYGRSKLFSVEGRTKRDKWRV 249


>gi|260584171|ref|ZP_05851919.1| YlmH protein [Granulicatella elegans ATCC 700633]
 gi|260158797|gb|EEW93865.1| YlmH protein [Granulicatella elegans ATCC 700633]
          Length = 262

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 5/202 (2%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+K   +GGY  AER R  + +P+  A T++   V  + I     F   SHG  LGS++G
Sbjct: 56  DIKFQFEGGYIAAERKRCMI-YPDFYAPTTEEFDVELIEIHYPIKFSSISHGQILGSLVG 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI R+++GDII  G +  Q L+  ++  YL  + +KVG +S+         L       
Sbjct: 115 LGIDRDQLGDIISDGIRW-QLLLTKQMLPYLKQNFQKVGKISIRIDEKEYTELILPIDHW 173

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
                I +SLR+D L ++ F +SR +   L+ +  V+VNW    +    +   DI+S+ G
Sbjct: 174 TYTTAIVSSLRLDTLIASIFHISRQRSKELVESNKVKVNWAEEIRPDFMIELLDIISIRG 233

Query: 298 KGRIKIGEIN-STRKGKFAVEL 318
            GRI+I  I   T+K K  +E+
Sbjct: 234 YGRIQIKNIEGRTKKDKIKLEI 255


>gi|229192067|ref|ZP_04319036.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
 gi|228591393|gb|EEK49243.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
          Length = 241

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124

Query: 207 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           Y+  +L+ +G V VS   +    +L + +E    KS     +SLR+D + +    LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVHGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           +   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 182 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|206976717|ref|ZP_03237621.1| S4 domain protein [Bacillus cereus H3081.97]
 gi|217961318|ref|YP_002339886.1| S4 domain-containing protein [Bacillus cereus AH187]
 gi|222097343|ref|YP_002531400.1| s4 domain protein [Bacillus cereus Q1]
 gi|375285823|ref|YP_005106262.1| S4 domain-containing protein [Bacillus cereus NC7401]
 gi|423353601|ref|ZP_17331228.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
 gi|423374305|ref|ZP_17351643.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
 gi|423567206|ref|ZP_17543453.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
 gi|423574496|ref|ZP_17550615.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
 gi|206745027|gb|EDZ56430.1| S4 domain protein [Bacillus cereus H3081.97]
 gi|217063822|gb|ACJ78072.1| S4 domain protein [Bacillus cereus AH187]
 gi|221241401|gb|ACM14111.1| S4 domain protein [Bacillus cereus Q1]
 gi|358354350|dbj|BAL19522.1| S4 domain protein [Bacillus cereus NC7401]
 gi|401089414|gb|EJP97585.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
 gi|401094217|gb|EJQ02299.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
 gi|401212021|gb|EJR18767.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
 gi|401214294|gb|EJR21024.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
          Length = 255

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G   QAER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|336063821|ref|YP_004558680.1| S4 RNA-binding domain-containing protein [Streptococcus
           pasteurianus ATCC 43144]
 gi|334282021|dbj|BAK29594.1| S4 RNA-binding domain-containing protein [Streptococcus
           pasteurianus ATCC 43144]
          Length = 263

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 73  GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
           G+ + IE++    ++ARR  +      +DFL P  +  +   +        V+   YP A
Sbjct: 14  GEYDFIEKID---DLARRVEATYAYALTDFLNPRQVDIARSVIGNRGLHYFVSSDYYP-A 69

Query: 133 ERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDII 189
           E  RL V  P+    +P+   +  L +  N  F   +H   +G++L   GI R  IGDI+
Sbjct: 70  EYARLIVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDIL 128

Query: 190 LQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 248
           +  E G AQ LV   +ADY    + K+   SVS   IPL  L      ++    I +S+R
Sbjct: 129 V--ESGYAQLLVTQNMADYFRADVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMR 186

Query: 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEIN 307
           +D + +   KLSRS+ V L+    V++N+  V +    L+ GD++SV G GR  I  E  
Sbjct: 187 MDKVLATVLKLSRSQAVQLMETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENG 246

Query: 308 STRKGK 313
            T+ GK
Sbjct: 247 LTKNGK 252


>gi|227889762|ref|ZP_04007567.1| possible ribosomal protein S4e [Lactobacillus johnsonii ATCC 33200]
 gi|227849626|gb|EEJ59712.1| possible ribosomal protein S4e [Lactobacillus johnsonii ATCC 33200]
          Length = 265

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 11/230 (4%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVGH-PEALTSD 148
           + E + +DFL P           K+  V   AQ    GG+  AE+ RL +    E    D
Sbjct: 34  KNEPILTDFLNP----REQYIFRKI--VGGYAQLYSFGGFSNAEKKRLLLCEWSEGYKPD 87

Query: 149 PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 208
              ++ L I     +   +H   LG +   GI  +  GDII       QF V  EL DY 
Sbjct: 88  EFNISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFVKAELKDYF 147

Query: 209 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
           +  ++++G   V  + +PL  +  +   ++   ++  SLR+DA+ SA   LSRS++  +I
Sbjct: 148 LEEIDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKII 207

Query: 269 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
             G+ ++NW  VT++   +   D++S+   GR +I  + +T+KGK  +E+
Sbjct: 208 EAGEAKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257


>gi|228922650|ref|ZP_04085950.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837079|gb|EEM82420.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 241

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124

Query: 207 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           Y+  +L+ +G V VS   +    +L + +E    KS     +SLR+D + +    LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEKILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           +   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 182 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|228954174|ref|ZP_04116202.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071397|ref|ZP_04204619.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
 gi|229081150|ref|ZP_04213660.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
 gi|229180173|ref|ZP_04307517.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
 gi|449090839|ref|YP_007423280.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
           kurstaki str. HD73]
 gi|228603382|gb|EEK60859.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
 gi|228702194|gb|EEL54670.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
 gi|228711688|gb|EEL63641.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
 gi|228805494|gb|EEM52085.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|449024596|gb|AGE79759.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
           kurstaki str. HD73]
          Length = 241

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G  P AER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           Y+  +L+ +G V VS   +    +L + +E    KS     +SLR+D + +    LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           +   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 182 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|322385897|ref|ZP_08059539.1| S4 domain-containing protein YlmH [Streptococcus cristatus ATCC
           51100]
 gi|417922465|ref|ZP_12565953.1| S4 domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270076|gb|EFX52994.1| S4 domain-containing protein YlmH [Streptococcus cristatus ATCC
           51100]
 gi|342832562|gb|EGU66857.1| S4 domain protein [Streptococcus cristatus ATCC 51100]
          Length = 261

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 9/241 (3%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HP 142
           +E+ +R  ++     + FL P  +   +  L K  DV+  A   Y  +E  ++ +   + 
Sbjct: 21  MELLQRVENQYSYETTAFLNPHQVN-ILKNLSKQYDVQVFASSDYFPSEFAKVLIAPSYY 79

Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVV 201
           +    D D+V  L IT    F   +H   +G++L   GI R   GDII+  ++ AQ  V 
Sbjct: 80  QLELEDFDVVL-LEITYASKFYKVTHSQIMGTLLHQLGIERRTFGDIIVVDDR-AQVFVD 137

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
             L +Y IT++ K+  V V   R+       + P TK+   + +SLR+D L +  FKLSR
Sbjct: 138 RRLEEYFITNVSKIAKVPVRLRRVDFKDQLQDAPVTKTTDVLVSSLRLDKLVATVFKLSR 197

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAVEL 318
           S+ V LI    V+ N+ T+      L  GD++SV   GR KI   N   K    K  VEL
Sbjct: 198 SQAVELIMGKQVKQNYRTIDNPSHQLSLGDLISVRKYGRFKILTENGFSKNGKHKLTVEL 257

Query: 319 I 319
           +
Sbjct: 258 L 258


>gi|225572136|ref|ZP_03781000.1| hypothetical protein RUMHYD_00430 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040402|gb|EEG50648.1| S4 domain protein [Blautia hydrogenotrophica DSM 10507]
          Length = 254

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 16/259 (6%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           DK+ + E K + ++A RA +R  VL++DFL    L +    +     V     GGY  AE
Sbjct: 2   DKDLLFE-KRMKDLASRAYNRDIVLYTDFLNLDELHKIHSLISGSLPVTVCTFGGYDLAE 60

Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS--------HGDFLGSILGTGIAREKI 185
           R +++   P+AL+   + + +  I      QP S        H D+LG++L  G+ R  +
Sbjct: 61  R-QMAAFLPDALSYLMEEILSYPIVC-LKIQPLSLKFSEKLSHRDYLGALLNLGLERSML 118

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFKTIE 244
           GD+++  E GA       +A ++  +L +V + +V   ++  + +E  P P+ +  +   
Sbjct: 119 GDLLID-ETGAYCFCKETMAGFIQDNLTRVRHTAVLTVQV--MEMEELPQPKFREIQGTV 175

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
            S+R+D L +  F  SRS++   I  G V VN   +T NG T R  D++SV  KGR    
Sbjct: 176 PSIRLDVLIALAFGESRSRITPFIEGGKVFVNGRQITSNGYTPREKDLISVRQKGRFIYE 235

Query: 305 EI-NSTRKGKFAVELIQYL 322
           +I   T+KG++ V + +YL
Sbjct: 236 QILTQTKKGRYRVSVKRYL 254


>gi|227514818|ref|ZP_03944867.1| ribosomal protein S4e [Lactobacillus fermentum ATCC 14931]
 gi|227086808|gb|EEI22120.1| ribosomal protein S4e [Lactobacillus fermentum ATCC 14931]
          Length = 262

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
           FL P       +   +  +VK   +G YP AE  R  + +P     T D   +  L I  
Sbjct: 40  FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 98

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H   +G++L TG+ R   GDII   E   Q +V  +L+DYLI  +  +G   
Sbjct: 99  PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 157

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V   +  L          +   T  ASLR+DA+ +A F  SR++   LI  G VRVNW  
Sbjct: 158 VRLEKRELQGARVPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 217

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE 305
           + +    L + D++SV   GRIK+ E
Sbjct: 218 IDRPDYELASRDLISVRHGGRIKVQE 243


>gi|357236380|ref|ZP_09123723.1| YlmH protein [Streptococcus criceti HS-6]
 gi|356884362|gb|EHI74562.1| YlmH protein [Streptococcus criceti HS-6]
          Length = 261

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           ++A R         +DFL P  +K +     ++  +K      Y + E  R+ +  P+  
Sbjct: 23  DLAERVEDTYTYQLTDFLDPRQVKIAESVFGQMG-IKYYLSTDYLKTEYARV-IAAPDYY 80

Query: 146 TSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVP 202
             +P    VA L I+ N  F   +H   +GS +   GI R   GDIIL  E  AQ +V  
Sbjct: 81  ELEPQDFEVALLEISYNSKFNHLTHAQIMGSFINKLGIQRNVFGDIIL-TEVRAQIIVTK 139

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
            L  Y  T +EK+G  +V    +    L     R K F  + +SLR+D + ++ FKLSRS
Sbjct: 140 SLVSYFAT-VEKIGRAAVKIKEVDFSQLLLPANRAKEFDVLVSSLRLDKVIASAFKLSRS 198

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 313
               L+    V++N+  +T+    L  GD+VSV G GR +I   N   K K
Sbjct: 199 LASKLVEQEKVKLNYGLLTRPAELLELGDLVSVRGYGRFQIYRDNGLSKNK 249


>gi|389573338|ref|ZP_10163413.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
 gi|388427035|gb|EIL84845.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
          Length = 258

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
           +DFL P     +   ++   ++  +  GGY +AER R ++ +P+ L              
Sbjct: 35  TDFLDPREQFITQSVIQHSDELGLMFFGGYEEAERKR-ALIYPDYLAPSIQDFELTYFQV 93

Query: 160 NFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
           N+   F    H + LGS++GTG+ R+K GD++   E   QF+   ++AD++   L  VG 
Sbjct: 94  NYAKKFISIEHPNLLGSLIGTGLKRQKFGDLLF-SEDNVQFICTSDVADFVRAQLTHVGR 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            SVS   I    ++    +T   +   +SLR+DA+ +A  + SR K   L+ NG V+VNW
Sbjct: 153 ASVSLEEISKADIQPVISKTDIKEDTISSLRLDAVCAAVSRQSRQKAQLLVKNGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
                   T+  GD +SV G GR  +  I+  T+K KF V
Sbjct: 213 KVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252


>gi|385812132|ref|YP_005848523.1| ribosomal protein S4e [Lactobacillus fermentum CECT 5716]
 gi|299783031|gb|ADJ41029.1| Ribosomal protein S4e [Lactobacillus fermentum CECT 5716]
          Length = 261

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
           FL P       +   +  +VK   +G YP AE  R  + +P     T D   +  L I  
Sbjct: 39  FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 97

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H   +G++L TG+ R   GDII   E   Q +V  +L+DYLI  +  +G   
Sbjct: 98  PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 156

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V   +  L          +   T  ASLR+DA+ +A F  SR++   LI  G VRVNW  
Sbjct: 157 VRLEKRELQGARVPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 216

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE 305
           + +    L + D++SV   GRIK+ E
Sbjct: 217 IDRPDYELASRDLISVRHGGRIKVQE 242


>gi|288904818|ref|YP_003430040.1| hypothetical protein GALLO_0607 [Streptococcus gallolyticus UCN34]
 gi|288731544|emb|CBI13099.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
          Length = 261

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I ++ARR         +DFL P  +  +   +        V+   YP AE  RL V 
Sbjct: 17  IEKIDDLARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA 75

Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-A 196
            P+    +P+   +  L +  N  F   +H   +G++L   GI R  IGDI++  E G A
Sbjct: 76  -PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYA 132

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   +ADY   ++ K+   SVS   IPL  L      ++    + +S+R+D + +  
Sbjct: 133 QLLVTQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATV 192

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 313
            KLSRS+ V LI    V++N+  V +    L+ GD++SV G GR  I  E   T+ GK
Sbjct: 193 LKLSRSQAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 250


>gi|184155056|ref|YP_001843396.1| hypothetical protein LAF_0580 [Lactobacillus fermentum IFO 3956]
 gi|183226400|dbj|BAG26916.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 262

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
           FL P       +   +  +VK   +G YP AE  R  + +P     T D   +  L I  
Sbjct: 40  FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 98

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H   +G++L TG+ R   GDII   E   Q +V  +L+DYLI  +  +G   
Sbjct: 99  PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 157

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V   +  L          +   T  ASLR+DA+ +A F  SR++   LI  G VRVNW  
Sbjct: 158 VRLEKRELQGARAPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 217

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE 305
           + +    L + D++SV   GRIK+ E
Sbjct: 218 IDRPDYELASRDLISVRHGGRIKVQE 243


>gi|306830850|ref|ZP_07464012.1| S4 domain-containing protein YlmH [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426873|gb|EFM29983.1| S4 domain-containing protein YlmH [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 263

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I ++ARR         +DFL P  +  +   +        V+   YP AE  RL V 
Sbjct: 19  IEKIDDLARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA 77

Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-A 196
            P+    +P+   +  L +  N  F   +H   +G++L   GI R  IGDI++  E G A
Sbjct: 78  -PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   +ADY   ++ K+   SVS   IPL  L      ++    + +S+R+D + +  
Sbjct: 135 QLLVTQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATV 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 313
            KLSRS+ V LI    V++N+  V +    L+ GD++SV G GR  I  E   T+ GK
Sbjct: 195 LKLSRSQAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 252


>gi|423385399|ref|ZP_17362655.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
 gi|401635455|gb|EJS53210.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
          Length = 255

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|423437350|ref|ZP_17414331.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
 gi|401120505|gb|EJQ28301.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
          Length = 255

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRVAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS   +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|116334045|ref|YP_795572.1| cell division protein [Lactobacillus brevis ATCC 367]
 gi|116099392|gb|ABJ64541.1| Cell division protein, S4-like domain [Lactobacillus brevis ATCC
           367]
          Length = 259

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 14/226 (6%)

Query: 100 SDFLTPPVLKESMMA--LEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAAL 155
           ++FL P   ++  +A  L + ADV     GGY  AE  R      + E +  D ++ A L
Sbjct: 36  TNFLNP---RQVYIATTLAQRADVPVRFNGGYAHAEMQRALFYPDYYEPVAKDFEL-AVL 91

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE--LADYLITSLE 213
            +     F    H   LG++LG GI RE +GDI+     G  + VV E  +ADYL   ++
Sbjct: 92  RVDYPVKFATLHHSQILGTLLGAGIEREILGDIL---TDGTTWQVVTEAGMADYLTGQVD 148

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           ++G V           L +      +     +SLR+D +   GF LSR +   LI  G V
Sbjct: 149 RIGRVKARLQLADFADLVHPLSEWTAEGATLSSLRLDNIVGTGFHLSRHRAKELIEAGHV 208

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           R+NW    K    L   DIVSV G GRI++ E+   T+K K  V L
Sbjct: 209 RLNWAETQKPDYELDVADIVSVRGFGRIRLDEVGGRTKKDKIRVTL 254


>gi|229140546|ref|ZP_04269101.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
 gi|229198009|ref|ZP_04324723.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
 gi|228585488|gb|EEK43592.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
 gi|228643107|gb|EEK99383.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
          Length = 241

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  DV     G   QAER R  + +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKRALI-YPDYLVIN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|229157476|ref|ZP_04285553.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
 gi|228625926|gb|EEK82676.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
          Length = 241

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +RA+   +V  +DFL P   +   M + +  +V     G   QAER R ++ +P+ L  +
Sbjct: 8   KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GEVAVQFDGATSQAERKR-ALIYPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|325977748|ref|YP_004287464.1| hypothetical protein SGGBAA2069_c05480 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|386337259|ref|YP_006033428.1| S4 RNA-binding domain-containing protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC 43143]
 gi|325177676|emb|CBZ47720.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|334279895|dbj|BAK27469.1| S4 RNA-binding domain-containing protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC 43143]
          Length = 263

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I ++ARR         +DFL P  +  +   +        V+   YP AE  RL V 
Sbjct: 19  IEKIDDLARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA 77

Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-A 196
            P+    +P+   +  L +  N  F   +H   +G++L   GI R  IGDI++  E G A
Sbjct: 78  -PDYYEFNPEDFELILLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   +ADY   ++ K+   SVS   IPL  L      ++    + +S+R+D + +  
Sbjct: 135 QLLVTQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATV 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 313
            KLSRS+ V LI    V++N+  V +    L+ GD++SV G GR  I  E   T+ GK
Sbjct: 195 LKLSRSQAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 252


>gi|409350244|ref|ZP_11233430.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
 gi|407877568|emb|CCK85488.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
          Length = 266

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 21/247 (8%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + + + +  R   + E + +DFL P   K  ++      ++     GGY +AE+ R+   
Sbjct: 22  IDYFVGLFNRVLYQGEPVLTDFLDP--RKRQILQAVAGGEIMLDEYGGYDEAEKKRVY-- 77

Query: 141 HPEALTSD----PDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
               LTSD    P     V+ L I+    F    H   LGS+  +G+  E  GDI+  G+
Sbjct: 78  ----LTSDWLPLPKKEFGVSLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQ 133

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVD 250
              QF    EL  +   ++ ++G V V    +    LLA+E     +K+   + ASLR+D
Sbjct: 134 GRWQFFAEKELVPFFSENIYRMGPVKVKLEEVEMRDLLAIE---DGSKALDGVAASLRLD 190

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTR 310
           A+ +A    SR++L   +  G+VR+NW   TK    ++ GD+VS+   GR+KI  I  T+
Sbjct: 191 AVLAALSGKSRTQLKQALEAGEVRLNWHPETKAEKEVQIGDLVSLRHFGRVKILSIYPTK 250

Query: 311 KGKFAVE 317
           KG+F +E
Sbjct: 251 KGRFHLE 257


>gi|336113714|ref|YP_004568481.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 2-6]
 gi|335367144|gb|AEH53095.1| RNA-binding S4 domain protein [Bacillus coagulans 2-6]
          Length = 258

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 7/219 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P + +           V   A GGY ++ER R+ +  P+  + D D   +A   +
Sbjct: 35  TDFLDPRMQQIVNTVTGNHGAVSVRAFGGYKESERKRI-LFFPDYFSPDEDDFHLALFEV 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LGS++  G+ REK GDI++ GE   QF    ELAD++     ++G 
Sbjct: 94  HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI-GEGRIQFFAAAELADFIQMEFRQIGK 152

Query: 218 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
             V+ T++ L  A+  +    +   T+ +SLR+DA+ SA + +SR K   LI +G V+VN
Sbjct: 153 TPVTLTKMQLDQAIRQQQHWLEKQATV-SSLRLDAILSAVYNISRQKTRMLIEHGLVKVN 211

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
           W TV         GD  S  G GR ++  +   T+K K+
Sbjct: 212 WKTVEDPSFQCGEGDTFSTRGYGRSRLIRVEGKTKKEKW 250


>gi|260663600|ref|ZP_05864489.1| RNA-binding S4 domain-containing protein [Lactobacillus fermentum
           28-3-CHN]
 gi|260551826|gb|EEX24941.1| RNA-binding S4 domain-containing protein [Lactobacillus fermentum
           28-3-CHN]
          Length = 261

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 159
           FL P       +   +  +VK   +G YP AE  R  + +P     T D   +  L I  
Sbjct: 39  FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 97

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H   +G++L TG+ R   GDII   E   Q ++  +L+DYLI  +  +G   
Sbjct: 98  PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIIQRQLSDYLIEQVTSIGKAK 156

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V   +  L          +   T  ASLR+DA+ +A F  SR++   LI  G VRVNW  
Sbjct: 157 VRLEKRELQGARAPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 216

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGE 305
           + +    L + D++SV   GRIK+ E
Sbjct: 217 IDRPDYELASRDLISVRHGGRIKVQE 242


>gi|385826107|ref|YP_005862449.1| cell division protein [Lactobacillus johnsonii DPC 6026]
 gi|329667551|gb|AEB93499.1| cell division protein [Lactobacillus johnsonii DPC 6026]
          Length = 265

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCR-LSVGHPEALTSDPDI 151
           + E + +DFL P   +E  +  E +     +   GG+  AE+ R L     E    D   
Sbjct: 34  KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCDWSEGYKPDEFN 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           ++ L I     +   +H   LG +   GI  +  GDII        F +  EL DY +  
Sbjct: 91  ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWLFFIKAELKDYFLEE 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++++G   V  + +PL  +  +   ++   ++  SLR+DA+ SA   LSRS++  +I  G
Sbjct: 151 IDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKIIEAG 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +V++NW  VT++   +   D++S+   GR +I  + +T+KGK  +E+
Sbjct: 211 EVKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257


>gi|423528243|ref|ZP_17504688.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
 gi|402451906|gb|EJV83725.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
          Length = 255

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V++NW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKINWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|408411391|ref|ZP_11182550.1| S4 domain protein [Lactobacillus sp. 66c]
 gi|407874400|emb|CCK84356.1| S4 domain protein [Lactobacillus sp. 66c]
          Length = 265

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 21/247 (8%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + + + +  R   + E + +DFL P   K  ++      ++     GGY +AE+ R+   
Sbjct: 21  IDYFVGLFNRVLYQGEPVLTDFLDP--RKRQILQAVAGGEIMLDEYGGYDEAEKKRVY-- 76

Query: 141 HPEALTSD----PDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
               LTSD    P     V+ L I+    F    H   LGS+  +G+  E  GDI+  G+
Sbjct: 77  ----LTSDWLPLPKKEFGVSLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQ 132

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVD 250
              QF    EL  +   ++ ++G V V    +    LLA+E     +K+   + ASLR+D
Sbjct: 133 GRWQFFAEKELVPFFSENIYRMGPVKVKLEEVEMRDLLAIE---DGSKALDGVAASLRLD 189

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTR 310
           A+ +A    SR++L   +  G+VR+NW   TK    ++ GD+VS+   GR+KI  I  T+
Sbjct: 190 AVLAALSGKSRTQLKQALEAGEVRLNWHPETKAEKEVQIGDLVSLRHFGRVKILSIYPTK 249

Query: 311 KGKFAVE 317
           KG+F +E
Sbjct: 250 KGRFHLE 256


>gi|354807874|ref|ZP_09041326.1| S4 domain protein [Lactobacillus curvatus CRL 705]
 gi|354513624|gb|EHE85619.1| S4 domain protein [Lactobacillus curvatus CRL 705]
          Length = 262

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 109/241 (45%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +L+   +A      + + FL P         + +  DV+    GGY  AER R  + 
Sbjct: 19  VAQVLDWIEQAQVEYRPILTAFLDPRQAFILQTLVGEKGDVRYHFNGGYNAAERKRAMIA 78

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
                 +D D  +    I     F   SHG  LG+++  GI R+  GDI+   E+  QF 
Sbjct: 79  PDYFEPTDADFEIQLFEIRYPIKFANLSHGKVLGTLVNAGIDRDVFGDIMTDEERW-QFF 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFK 258
           V  ++A Y+   + K+G VSV         L   P     F +T  +S R+D + S  + 
Sbjct: 138 VTKKMAGYVEEQITKIGRVSVHLQEQDYTQL-LTPKDAWQFEQTTVSSFRLDTIISTVYN 196

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 317
           LSR +   LI    V++NW    K    L   DIVSV G GRI++  I+  TRK K+ V 
Sbjct: 197 LSRQRAKELIQANKVKLNWQAFDKPDFELALLDIVSVRGFGRIQLQSIDGQTRKEKYRVT 256

Query: 318 L 318
           L
Sbjct: 257 L 257


>gi|116629833|ref|YP_815005.1| cell division protein [Lactobacillus gasseri ATCC 33323]
 gi|282851657|ref|ZP_06261022.1| S4 domain protein [Lactobacillus gasseri 224-1]
 gi|420148405|ref|ZP_14655673.1| S4 domain protein [Lactobacillus gasseri CECT 5714]
 gi|116095415|gb|ABJ60567.1| Cell division protein, S4-like domain [Lactobacillus gasseri ATCC
           33323]
 gi|282557625|gb|EFB63222.1| S4 domain protein [Lactobacillus gasseri 224-1]
 gi|398399957|gb|EJN53553.1| S4 domain protein [Lactobacillus gasseri CECT 5714]
          Length = 265

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 149
           + E + +DFL P    + +E +    +L        GG+  AE+ RL +    +A     
Sbjct: 34  KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWGQAYEPSM 88

Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
             V  L I     +   +H   LG +   GI  +  GDII       QF V  EL DY I
Sbjct: 89  FKVTLLEIDYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGKWQFFVKTELKDYFI 148

Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 269
             + +VG   V    +PL  +  +   +K    I  SLR+DA+ SA   LSRS++  +I+
Sbjct: 149 EQVTRVGRTKVKLHDLPLSKVLAQEDDSKELSVITISLRLDAVVSAVTNLSRSQVKKIIA 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +G+V++NW  V ++   +   D+ S+   GR +I  + +T+KGK  +E+
Sbjct: 209 DGEVKLNWHLVAQSNIIVSVQDMFSIRHYGRYEIINLATTKKGKKRLEI 257


>gi|420155653|ref|ZP_14662511.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
 gi|394758882|gb|EJF41718.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
          Length = 253

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 124/246 (50%), Gaps = 18/246 (7%)

Query: 76  NAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERC 135
           NAI E + +L+  R  S R + +   FL+      +   L +      +  GG+  AER 
Sbjct: 9   NAILEAR-LLDAVRLCSRRSQPVFVGFLSEAEAFSAQGVLRREGFFHYLFWGGFEGAERV 67

Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPC---SHGDFLGSILGTGIAREKIGDIILQG 192
                 P+ L  +P+     ++T    F+ C   +H DFLG+++  GI R+ +GD++++ 
Sbjct: 68  MFGA-FPDYLEPEPESFPICAVTA--AFRDCDKLTHRDFLGALMALGITRDTVGDLLIEP 124

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCT---RIPLLA-LEYEPPRTKSFKTIEASLR 248
            +G  FL   E+A Y+ T +EK+G V V  T     PL   L +EP     F T+ AS R
Sbjct: 125 GRGVLFLR-EEMAGYVQTQVEKIGRVGVRLTPGFTEPLPGGLGFEP-----FSTVIASPR 178

Query: 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN- 307
           +D + +A  ++SR K   L+ +G V +    +      ++ GD +SV GKGR  + +I  
Sbjct: 179 LDCVVAAALRISREKAARLVESGGVLLGGVQIMSVSAAVKDGDRLSVRGKGRFILDQIGP 238

Query: 308 STRKGK 313
            T++G+
Sbjct: 239 ETKRGR 244


>gi|333394736|ref|ZP_08476555.1| hypothetical protein LcorcK3_02887 [Lactobacillus coryniformis
           subsp. coryniformis KCTC 3167]
 gi|420145231|ref|ZP_14652703.1| S4 domain protein [Lactobacillus coryniformis subsp. coryniformis
           CECT 5711]
 gi|398403137|gb|EJN56406.1| S4 domain protein [Lactobacillus coryniformis subsp. coryniformis
           CECT 5711]
          Length = 260

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 5/191 (2%)

Query: 127 GGYPQAERCRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGY  AER R  + +PE    T +   +    I     F   SHG  LG+++  GI RE 
Sbjct: 63  GGYLAAERKRALI-YPEYFVPTQEDFDIQLFEIHYPTKFATLSHGKVLGTLVNAGIKREV 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDI+  G++  QF V   +ADY+ T + ++G + V         L           T  
Sbjct: 122 FGDIMTDGDR-WQFFVTASMADYIQTQITQIGRIGVRLEPKDYTELLVPKDAWSLEHTTA 180

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           +SLR+D L SA + +SR +   L+ NG +++NW    +    L   DI+SV G GRI++ 
Sbjct: 181 SSLRIDGLISAVYNISRQRSKELVENGKIKLNWQVFERPDFELGLRDIISVRGFGRIQLR 240

Query: 305 EIN-STRKGKF 314
           EI   ++K K+
Sbjct: 241 EIEGKSKKDKY 251


>gi|336236134|ref|YP_004588750.1| RNA-binding S4 domain-containing protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|423720667|ref|ZP_17694849.1| RNA-binding S4 domain-containing protein [Geobacillus
           thermoglucosidans TNO-09.020]
 gi|335362989|gb|AEH48669.1| RNA-binding S4 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|383366020|gb|EID43311.1| RNA-binding S4 domain-containing protein [Geobacillus
           thermoglucosidans TNO-09.020]
          Length = 257

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P   +     + +  +V     GG    ER R  +  P    S+ D  +A   + 
Sbjct: 34  TDFLDPREQQIVQSVIGRDEEVHFSFFGGASFTERKRALLYPPYFQPSEEDYEIALFEVR 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H   LG+++  G+ R K GDI+++ E+  QFL   E+ADY+   L  +G  
Sbjct: 94  YPSKFVTIGHRQVLGALMSLGLRRGKFGDILMKDEQ-IQFLAANEVADYIRLHLHAIGKA 152

Query: 219 SVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           +VS  + PL   ++ E     +  T+ +SLR+DA+ S  F  SR K+ + I NG V+VNW
Sbjct: 153 NVSVEKKPLTDIIKLEENWQDAMITV-SSLRLDAILSQAFHASRQKIQSCIENGLVKVNW 211

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             V +     R GD++S  G GR KI  ++  T+K ++ + +
Sbjct: 212 KIVDQAHFECRQGDVLSARGFGRCKIIAMDGKTKKDRWRIRI 253


>gi|299821564|ref|ZP_07053452.1| S4 domain-containing protein YlmH [Listeria grayi DSM 20601]
 gi|299817229|gb|EFI84465.1| S4 domain-containing protein YlmH [Listeria grayi DSM 20601]
          Length = 258

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 96/195 (49%), Gaps = 6/195 (3%)

Query: 120 DVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           ++K    GG    ER R  +   + E   +D +I A   I     F   +H   LG+++ 
Sbjct: 55  NIKVAFNGGRAHTERVRALIYPDYYEPAETDFEI-ALFQIRYPVKFTTLTHQKILGTLMS 113

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPR 236
            G+ R+  GDI L+ E   QF V   + DYL T +EK+G V+V    +PL  A+      
Sbjct: 114 LGMKRDIFGDI-LEKEDIWQFFVEASMKDYLSTQIEKIGKVNVMLEEVPLTDAILTHVDW 172

Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
            +   T+ +SLR+D L +A   +SR K   L+  G VRVNW T+          DI+SV 
Sbjct: 173 IEKAITV-SSLRLDVLIAASHNISRQKAKQLVQGGLVRVNWKTIENADFLCVAEDIISVR 231

Query: 297 GKGRIKIGEINSTRK 311
           G GRIK+ E N   K
Sbjct: 232 GYGRIKLMETNGKSK 246


>gi|312111751|ref|YP_003990067.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y4.1MC1]
 gi|311216852|gb|ADP75456.1| RNA-binding S4 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 257

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P   +     + +  +V     GG    ER R  +  P    S+ D  +A   + 
Sbjct: 34  TDFLDPREQQIVQSVIGRDEEVHFSFFGGASFTERKRALLYPPYFQPSEEDYEIALFEVR 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H   LG+++  G+ R K GDI+++ E+  QFL   E+ADY+   L  +G  
Sbjct: 94  YPSKFVTIGHRQVLGALMSLGLRRGKFGDILMKDEQ-IQFLAANEVADYIRLHLHAIGKA 152

Query: 219 SVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           +VS  + PL   ++ E     +  T+ +SLR+DA+ S  F  SR K+ + I NG V+VNW
Sbjct: 153 NVSVEKKPLTDIIKLEENWQDAMITV-SSLRLDAILSQAFHTSRQKIQSCIENGLVKVNW 211

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             V +     R GD++S  G GR KI  ++  T+K ++ + +
Sbjct: 212 KIVDQAHFECRQGDVLSARGFGRCKIIAMDGKTKKDRWRIRI 253


>gi|379012021|ref|YP_005269833.1| hypothetical protein Awo_c21690 [Acetobacterium woodii DSM 1030]
 gi|375302810|gb|AFA48944.1| hypothetical protein containing a RNA-binding S4 domain
           [Acetobacterium woodii DSM 1030]
          Length = 245

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 6/197 (3%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GGY  AER  L +     L ++ D  + A+     F   P  H + LG ++  GI RE +
Sbjct: 52  GGYSDAERKMLCIYPEYLLEAELDWPIFAIEFDKTF---PLDHRNVLGELMHLGITRESV 108

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI + G+K  Q LV   L DYL T+  +V    ++        +       K    I A
Sbjct: 109 GDINI-GDKTVQILVHQRLHDYLWTNFNQVKGREINVRLKEYAQISGFQKEFKRLSVIVA 167

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           S R+D + +  +  SR   +  I  G VRVN+T + KN   L+ GDI+S+ GKG+ +I  
Sbjct: 168 SNRLDGIINKIWGFSRQNSLVYIKQGKVRVNYTEIGKNDFRLQPGDIISLRGKGKARIVS 227

Query: 306 INS-TRKGKFAVELIQY 321
           +N  T+KG   +E+ QY
Sbjct: 228 MNERTKKGNIRLEVDQY 244


>gi|295425121|ref|ZP_06817826.1| S4 domain protein [Lactobacillus amylolyticus DSM 11664]
 gi|295065180|gb|EFG56083.1| S4 domain protein [Lactobacillus amylolyticus DSM 11664]
          Length = 276

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 13/231 (5%)

Query: 94  RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDP 149
           + E L +DFL P    +LK  +     L D      GGY  +E+ R+ +    E   +  
Sbjct: 44  KHESLLTDFLDPGQREILKIIVGNEAFLQDF-----GGYLNSEKRRVYLSEEWENFRTTD 98

Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
             V A  I     F   +H   LG++  +GI  +  GDII  G    QF    EL  Y  
Sbjct: 99  FQVQAFEIQYPTKFYKLTHSSILGTLANSGIKTDTFGDIITDGHGKWQFFAKKELQSYFE 158

Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNL 267
             + ++G   V     P+   E   P   S + +E  +SLR+DA+ +   K SR++L   
Sbjct: 159 EQIVRIGKSKVKLQ--PISFKEVLVPEDDSIEKVEIVSSLRLDAILAGISKQSRTQLKTQ 216

Query: 268 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           I +G V++NW  +  +   ++  D++S+   GR++I  I STRKGKF V L
Sbjct: 217 IEDGTVKLNWHDIVNSNIMIKENDVISLRHFGRLQITSIASTRKGKFRVVL 267


>gi|311068062|ref|YP_003972985.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus atrophaeus 1942]
 gi|419823957|ref|ZP_14347490.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus atrophaeus C89]
 gi|310868579|gb|ADP32054.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus atrophaeus 1942]
 gi|388471994|gb|EIM08784.1| factor involved in shape determination, RNA-binding fold protein
           [Bacillus atrophaeus C89]
          Length = 258

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 9/241 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ---GGYPQAERCRL 137
           +   LE  R    +  +  +DFL P   +E ++A   +    +V     GGY  AER R 
Sbjct: 16  IDQALEWKRIVQEQYRMKLTDFLDP---REQVIAASVIGQADSVGLALFGGYDGAERKRA 72

Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +    A   + D  + A  +     F    H   LGS++G G+ R+K GD++   E   
Sbjct: 73  LLYPDYANPEETDFGLQAFEVHYPEKFVSIDHRSLLGSLMGIGLKRQKFGDLVF-AESAV 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V  E AD++   L + G   V+  +I L  L+      +      +SLR+DA+ ++ 
Sbjct: 132 QLIVTAETADFVAGQLTQAGKAKVNLEKISLSDLQIPARDVEIRDDTVSSLRLDAVCASM 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFA 315
            + SR K + L+ NG V+VNW  V      L  GD++S+ G GR  + +I   T+K K+ 
Sbjct: 192 SRQSRQKALTLVKNGLVKVNWKVVEDPSYQLAEGDMLSIRGFGRSSLTKIEGKTKKDKWR 251

Query: 316 V 316
           V
Sbjct: 252 V 252


>gi|443632790|ref|ZP_21116969.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
           KCTC 13429]
 gi|443347613|gb|ELS61671.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
           KCTC 13429]
          Length = 257

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 12/223 (5%)

Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEAL---TSDPDIVAA 154
           +DFL P   +E ++  A+   ADV     GGY +AER R ++ +PE +    SD ++  A
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYGRAERKR-AILYPEYIIPEESDFEL-QA 89

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            ++     F    H   LG+++G G+ R+K GDI+   E   Q +V  + AD++   L +
Sbjct: 90  FNVRYAEKFVTVDHRSLLGALMGIGLRRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
            G  +VS  +I L  L       +      +SLR+DA+ ++  + SR K   L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAIDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNW  V      +  GD++S+ G GR  + +I   T+K K+ V
Sbjct: 209 VNWKVVEDPSYMVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251


>gi|423389793|ref|ZP_17367019.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
 gi|423418194|ref|ZP_17395283.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
 gi|401106467|gb|EJQ14428.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
 gi|401641884|gb|EJS59601.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
          Length = 255

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  +V     G  P++ER R  + 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+A Y+  +L+ +G V VS T +    +     +        +SLR+D L +    
Sbjct: 131 AVAKEVASYIEMNLQSIGKVKVSLTPVQAEQILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +SR K+  LI  G V+VNW TV +       GD+ S+ G GR KI  +   T++ K+ +
Sbjct: 191 ISRQKVQPLIKGGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKIFSVEGKTKRDKWRI 249


>gi|431794691|ref|YP_007221596.1| hypothetical protein Desdi_2788 [Desulfitobacterium
           dichloroeliminans LMG P-21439]
 gi|430784917|gb|AGA70200.1| hypothetical protein Desdi_2788 [Desulfitobacterium
           dichloroeliminans LMG P-21439]
          Length = 265

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 126/255 (49%), Gaps = 14/255 (5%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           DK    E  H+L++   A S    + + FL+   L      + +   +    +GG P AE
Sbjct: 15  DKELKLEGAHLLDLCEEAISTSRPVWTPFLSQ-ALGNWFGGILRSEGLAFRVEGGLPDAE 73

Query: 134 RCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
           R R       G  + + S+  ++ A  +      +   H   LGS++G G+ R+ IGDI 
Sbjct: 74  RARFLMVEDAGMLDQVASEVKVIRAKPLDPRGTME---HRQILGSLMGMGLKRDVIGDIR 130

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKTIEASL 247
           + GE  +   V   +AD L++  +K G   +   ++ L+    E P  + + ++   AS 
Sbjct: 131 V-GEHCSFVAVAHGIADVLLSQWDKAGRERI---QVELVEGNQEIPAEQGEEWRITVASS 186

Query: 248 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN 307
           RVDA+AS+ F +SRS    LI  G V+ N   V+K    ++ GDI+S  G GRI++ E  
Sbjct: 187 RVDAVASSSFNVSRSTFQELIQQGKVKRNDLVVSKPDLEVKPGDILSCRGYGRIRLVEST 246

Query: 308 STRKGKFAVELIQYL 322
            TRKG+ A  +I+Y+
Sbjct: 247 GTRKGRIAWSIIRYI 261


>gi|375008102|ref|YP_004981735.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
 gi|359286951|gb|AEV18635.1| hypothetical protein GTCCBUS3UF5_13210 [Geobacillus thermoleovorans
           CCB_US3_UF5]
          Length = 257

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +LE     S +     +DFL P   +          DV+A   GG P  ER R+ + 
Sbjct: 15  IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLA 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
            P     + D  +   ++     F    H D LG+++  G+ R K GDI+++ GE   QF
Sbjct: 75  PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILIRDGE--IQF 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+ADY+   +E +G   V+   +PL A        +      +SLR+DA+ +  F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           L+R K   L+ +G V+VNW  V K       GD++S  G GR K+  +   T+K ++ + 
Sbjct: 193 LAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGMTKKERWRIR 252

Query: 318 L 318
           L
Sbjct: 253 L 253


>gi|423604475|ref|ZP_17580368.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
 gi|401245095|gb|EJR51453.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
          Length = 255

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +RA+   +V  +DFL P   +   M + +  DV     G   QAER R ++ 
Sbjct: 15  VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW  V +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|238853974|ref|ZP_04644331.1| cell division protein [Lactobacillus gasseri 202-4]
 gi|238833419|gb|EEQ25699.1| cell division protein [Lactobacillus gasseri 202-4]
          Length = 265

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 149
           + E + +DFL P    + +E +    +L        GG+  AE+ RL +    +A     
Sbjct: 34  KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWGQAYEPSM 88

Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
             V  L I     +   +H   LG +   GI  +  GDII       QF V  EL DY I
Sbjct: 89  FKVTLLEIDYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGKWQFFVKTELKDYFI 148

Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 269
             + +VG   V    +PL  +  +   +K    I  SLR+DA+ SA   LSRS++  +I+
Sbjct: 149 EQVTRVGRTKVKLHDLPLSKVLAQEDDSKELIVITISLRLDAVVSAVTNLSRSQVKKIIA 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +G+V++NW  V ++   +   D+ S+   GR +I  + +T+KGK  +E+
Sbjct: 209 DGEVKLNWHLVAQSNIIVSVQDMFSIRHYGRYEIINLATTKKGKKRLEI 257


>gi|381209821|ref|ZP_09916892.1| hypothetical protein LGrbi_07846 [Lentibacillus sp. Grbi]
          Length = 258

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 100 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 157
           +DFL P   +    +A   + +++    GG   AER R+ +    + +T D   +  L  
Sbjct: 34  TDFLNPREQQIVETLARTSMEELRVYKHGGSVNAERRRVIIAPMYDEVTDDSFQLTLLQG 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVG 216
           + +  F    H D +GS L  GI R+K+GDI+   E G  Q ++  E+A +++T+L  + 
Sbjct: 94  SYHDKFVSLGHRDVMGSFLSLGIKRQKLGDIM--AENGLIQIIMAEEIAPFILTNLTAIK 151

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
              +     PL +L            I +SLR+D++  A +KLSR     +IS G V+VN
Sbjct: 152 KTRIRLEERPLSSLVERKTNWDESNQIVSSLRLDSVVKAIYKLSRKDAAEMISKGLVKVN 211

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +         L  GD++S+ GKGR K+ +IN  T+K K ++
Sbjct: 212 YKVSDDRKLILNAGDMLSLRGKGRSKLVDINGRTKKDKLSI 252


>gi|229031529|ref|ZP_04187529.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
 gi|228729818|gb|EEL80798.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
          Length = 241

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           +R +   +V  +DFL P   +   M + +  DV     G  P AER R  + +P+ L  +
Sbjct: 8   KRVAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVSVQFDGATPHAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G   VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQTIGKAKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|341821086|emb|CCC57422.1| ribosomal protein S4e [Weissella thailandensis fsh4-2]
          Length = 261

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
           ++FL P  +      + +  D+K    GGY  AE  RL +   +   +  D D+   + I
Sbjct: 36  TNFLNPREIYILTTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYVPVLDDFDL-KVIQI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LG+ +  GIAR+ IGDII    +   F+    +  +++  L+ +G 
Sbjct: 95  KYPEKFTTLHHSTILGTFMHNGIARQSIGDIIKGENETWYFVATKAIGTFILQQLDHIGK 154

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
             V    +    +           T  +SLR+D++ + G+ +SR+    +I +  VRVNW
Sbjct: 155 AKVRFKEVTGDHITVVDNEWTIINTTVSSLRLDSIVANGYNISRNHAKQMIEHDLVRVNW 214

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           T + K    L   D+VSV   GR+KI E+N  T+K K+ + +
Sbjct: 215 TDINKPDYVLAVNDLVSVRQYGRLKIDELNGLTKKNKWRITM 256


>gi|421894307|ref|ZP_16324797.1| S4 domain protein [Pediococcus pentosaceus IE-3]
 gi|385272851|emb|CCG90169.1| S4 domain protein [Pediococcus pentosaceus IE-3]
          Length = 261

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 19/241 (7%)

Query: 91  ASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 144
           +SS +E L+      ++FL P         + +  ++K    GG+ +AE  R  +     
Sbjct: 21  SSSLQEALYQNRPILTNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYF 80

Query: 145 LTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
           + ++ D  V    I     F    H   LG+++  GI R   GDI+ Q E+  QF V  E
Sbjct: 81  VPAEDDFSVRIFEINYPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERW-QFAVNGE 139

Query: 204 LADYLITSLEKVGNVSV-----SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           L ++ +  ++++G + V     S   I  +  ++EP      +T+ ASLR+D++ S GF 
Sbjct: 140 LENFFLNEIDRIGKIKVKLIPTSTNDILKVQDDWEPVN----QTV-ASLRMDSIISTGFS 194

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
           +SR ++  LI    V++NW    K  T +   D++SV   GRIK+ +I   T+K K  ++
Sbjct: 195 ISRHRVKELIEKRLVQLNWMIDEKADTLIALNDVISVRKYGRIKLIDILGKTKKDKLKIQ 254

Query: 318 L 318
           L
Sbjct: 255 L 255


>gi|347534667|ref|YP_004841337.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
           1.1304]
 gi|345504723|gb|AEN99405.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
           1.1304]
          Length = 263

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 7/231 (3%)

Query: 90  RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT--- 146
           RA++    + +DFL    +      + +  +++  + GGY  +E  R  + +P+  +   
Sbjct: 28  RANTEYRPILTDFLNGREIYLLQTLVNRYPNLRLASNGGYINSEMKR-GLIYPDYFSPRS 86

Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
           +D ++ A L +     F    H   LG+++G GI R  +GDII  GEK  + +V   +A 
Sbjct: 87  ADFEL-AILKVDYPVKFATLKHNQILGTVMGAGIERNVLGDIITDGEKW-EMVVEKSMAP 144

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
           YLI S+++VG + V    +P   +      +K       SLR+D + +A F +SR+    
Sbjct: 145 YLINSIDQVGRIKVKLVSMPNNEVLNVIDDSKVVNLTLPSLRMDVIIAAVFHISRNVAKE 204

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           LI +  VR+NW T  K    +   D++SV G GRIK+   N  ++K K+ V
Sbjct: 205 LILHEKVRLNWFTYNKPDYDIAVHDLISVRGHGRIKMTANNGFSKKDKYKV 255


>gi|161507320|ref|YP_001577274.1| cell division protein [Lactobacillus helveticus DPC 4571]
 gi|260102623|ref|ZP_05752860.1| cell-division protein [Lactobacillus helveticus DSM 20075]
 gi|160348309|gb|ABX26983.1| Cell division protein [Lactobacillus helveticus DPC 4571]
 gi|260083577|gb|EEW67697.1| cell-division protein [Lactobacillus helveticus DSM 20075]
          Length = 266

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      DV     GGYP AE+ R+ +   E +   P   +
Sbjct: 34  KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDII       QF    EL D+    
Sbjct: 91  IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           + ++G   V    I    +      +     I AS+R+DA+ S+  K SR ++  LI N 
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
            V++NW  +  +   ++  DI+S+   GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|385814079|ref|YP_005850472.1| Cell division protein, S4-like domain [Lactobacillus helveticus
           H10]
 gi|323466798|gb|ADX70485.1| Cell division protein, S4-like domain [Lactobacillus helveticus
           H10]
          Length = 266

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      DV     GGYP AE+ R+ +   E +   P   +
Sbjct: 34  KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDII       QF    EL D+    
Sbjct: 91  IEPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           + ++G   V    I    +      +     I AS+R+DA+ S+  K SR ++  LI N 
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
            V++NW  +  +   ++  DI+S+   GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|288553144|ref|YP_003425079.1| putative RNA-binding S4 domain-containing protein [Bacillus
           pseudofirmus OF4]
 gi|288544304|gb|ADC48187.1| putative RNA-binding S4 domain protein [Bacillus pseudofirmus OF4]
          Length = 257

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 3/238 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V+ +L      S   +   +DFL P       + +    ++     GG   +ER R  + 
Sbjct: 15  VEQVLSWKEEVSVMHQERRTDFLDPREQDIVRLIIGNDDELSYQFFGGADDSERKRAYLC 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
               +    D  +A  SI     F   +H D LGS++  G+ REK GDI++  +   Q +
Sbjct: 75  PSYLVIEQSDFNLAYFSINYPAKFITLTHSDVLGSLMNIGLKREKFGDIMI-TQDDIQLV 133

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V  E+AD++  ++EK+G  S+    I L  L+    +     T  +S+R+D + S  + L
Sbjct: 134 VASEIADFVKMNVEKIGKASIDLVPISLEQLKTPEEKWTEEGTTVSSMRLDVILSEIYNL 193

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           SR+K+   I  G V+VNW         ++ GD +SV G GR K+ E +  T+K K  +
Sbjct: 194 SRAKVKPYIERGFVKVNWRVTDHVDFLVKEGDYISVRGHGRSKVLEQLGRTKKDKIRI 251


>gi|75763514|ref|ZP_00743226.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74488996|gb|EAO52500.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 255

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSXGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW  V +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|403515290|ref|YP_006656110.1| cell division protein [Lactobacillus helveticus R0052]
 gi|403080728|gb|AFR22306.1| cell division protein [Lactobacillus helveticus R0052]
          Length = 266

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      DV     GGYP AE+ R+ +   E +   P   +
Sbjct: 34  KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDII       QF    EL D+    
Sbjct: 91  IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           + ++G   V    I    +      +     I AS+R+DA+ S+  K SR ++  LI N 
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
            V++NW  +  +   ++  DI+S+   GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|222153413|ref|YP_002562590.1| hypothetical protein SUB1286 [Streptococcus uberis 0140J]
 gi|222114226|emb|CAR42803.1| conserved hypothetical protein [Streptococcus uberis 0140J]
          Length = 263

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 9/243 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ +++  RR      +  +DFL P  + E +  L    ++   +   +   E  R+ + 
Sbjct: 19  IEKMMDQLRRVEDNYLLHVTDFLNPRQI-EIVKILSASMNITCFSSSDHYHTEYGRVILA 77

Query: 141 HPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGA 196
            P+    DP   DI + + I+ +  F   +H   LG+++   GI R  IGDI++  +  A
Sbjct: 78  -PDYYQLDPLDYDI-SLVEISYHSKFNTLTHAQILGTLINELGIKRSMIGDILVH-DGFA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V  +   Y + +++K+  VSV+   I L +L              +SLR+D L ++ 
Sbjct: 135 QLMVNRQFLHYFLGNIQKIARVSVNLKEIDLNSLLLVQKEESLIDITLSSLRIDRLIASV 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
            KLSRS+ + L+ +  V+VN+  +TK+  ++  GD+VSV G GR K+ + N  T+ GK+ 
Sbjct: 195 LKLSRSQAIKLVESEKVKVNYRIITKSSDSIAIGDLVSVRGFGRFKLLQDNGFTKNGKYK 254

Query: 316 VEL 318
           + L
Sbjct: 255 ITL 257


>gi|196035794|ref|ZP_03103196.1| S4 domain protein [Bacillus cereus W]
 gi|218905027|ref|YP_002452861.1| S4 domain-containing protein [Bacillus cereus AH820]
 gi|195991443|gb|EDX55409.1| S4 domain protein [Bacillus cereus W]
 gi|218535821|gb|ACK88219.1| S4 domain protein [Bacillus cereus AH820]
          Length = 255

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  D+     G   +AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+  LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|228902403|ref|ZP_04066557.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
 gi|228966851|ref|ZP_04127895.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|402564759|ref|YP_006607483.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
 gi|423359066|ref|ZP_17336569.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
 gi|423561697|ref|ZP_17537973.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
 gi|434377001|ref|YP_006611645.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
 gi|228792950|gb|EEM40508.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857147|gb|EEN01653.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
 gi|401084938|gb|EJP93184.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
 gi|401201954|gb|EJR08819.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
 gi|401793411|gb|AFQ19450.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
 gi|401875558|gb|AFQ27725.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
          Length = 255

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R  + 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW  V +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|329116034|ref|ZP_08244751.1| S4 domain protein [Streptococcus parauberis NCFD 2020]
 gi|326906439|gb|EGE53353.1| S4 domain protein [Streptococcus parauberis NCFD 2020]
          Length = 264

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 4/234 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  + E+  R      +  +DFL P  + + + +L    +++  +   Y   E  R+ + 
Sbjct: 20  IDKVSEIINRVEDTYVINITDFLNPRQI-DILKSLVAPTELQTFSSNDYYGTEYGRVIIA 78

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
                    D  +  L I  N  F    H   LG+++   GI RE +GDI+++ E  AQ 
Sbjct: 79  PAYYQFDQNDFELDLLEINYNAKFNQLRHSQILGTLINELGIKRESMGDILVE-EGYAQL 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           ++   L +Y + ++ K+G  SV+  +IP+  L  E     S   + +SLR+D + ++  K
Sbjct: 138 MISHHLLNYFLGNISKIGRASVTLKKIPINQLIKEANEMTSTDILVSSLRIDLIMASVIK 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           +SRS+ +  I +  V+VN+  VT+    L  GD++SV G GR KI   N   K 
Sbjct: 198 ISRSQAMKFIESEKVKVNYRKVTRTSDNLALGDMISVRGYGRFKIESDNGLSKN 251


>gi|313901208|ref|ZP_07834696.1| S4 domain protein [Clostridium sp. HGF2]
 gi|346314197|ref|ZP_08855718.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
           bacterium 2_2_44A]
 gi|373121511|ref|ZP_09535379.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
           bacterium 21_3]
 gi|422327527|ref|ZP_16408554.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
           bacterium 6_1_45]
 gi|312954166|gb|EFR35846.1| S4 domain protein [Clostridium sp. HGF2]
 gi|345906555|gb|EGX76279.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
           bacterium 2_2_44A]
 gi|371663367|gb|EHO28557.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
           bacterium 6_1_45]
 gi|371665529|gb|EHO30694.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
           bacterium 21_3]
          Length = 250

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 13/252 (5%)

Query: 77  AIEEVKHILEMARRASS---RREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQ 131
           AIE  +   E  RR      R E  +   +TP    + +   E+    + + +  GGY Q
Sbjct: 4   AIEHYRGNEEFVRRLQDQIDRMERWNRVVVTPFFSPDQIQIAERFCGHRILYRKDGGYAQ 63

Query: 132 AERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           AERCRL+    E     P  V  L    ++ F   +H D LG+++  GI R+K GD+I++
Sbjct: 64  AERCRLAFLPWEEEVQIP--VLHLKAKISYSFGKLAHRDVLGALMNLGIERDKTGDLIVE 121

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEASLRVD 250
            +      V P++ +YLI +L ++   +V        ++ YEP    ++K+ I +SLR+D
Sbjct: 122 -QDAVHMFVDPDIGNYLIANLTQIKRCAVHLEPSEE-SVSYEP--DIAYKSLIVSSLRLD 177

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INST 309
            L +A  +LSR+K  +LI +  V+V+   + +         ++S+ G GR ++ E +  T
Sbjct: 178 TLVAALARLSRAKAADLIRSKQVKVDHVILEQTSYLCDNTCVISIRGHGRFQLKEVVKET 237

Query: 310 RKGKFAVELIQY 321
           +KG   +E+  Y
Sbjct: 238 KKGNLVIEVGMY 249


>gi|218899051|ref|YP_002447462.1| S4 domain-containing protein [Bacillus cereus G9842]
 gi|218545304|gb|ACK97698.1| S4 domain protein [Bacillus cereus G9842]
          Length = 255

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLKLNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW  V +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|333905370|ref|YP_004479241.1| hypothetical protein STP_1121 [Streptococcus parauberis KCTC 11537]
 gi|333120635|gb|AEF25569.1| hypothetical protein STP_1121 [Streptococcus parauberis KCTC 11537]
 gi|456371347|gb|EMF50243.1| hypothetical protein SPJ2_1063 [Streptococcus parauberis KRS-02109]
 gi|457094971|gb|EMG25466.1| hypothetical protein SPJ1_0877 [Streptococcus parauberis KRS-02083]
          Length = 264

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 4/234 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  + E+  R      +  +DFL P  + + + +L    +++  +   Y   E  R+ + 
Sbjct: 20  IDKVSEIINRVEDTYVINVTDFLNPRQI-DILKSLVAPTELQTFSSNDYYGTEYGRVIIA 78

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
                    D  +  L I  N  F    H   LG+++   GI RE +GDI+++ E  AQ 
Sbjct: 79  PAYYQFDQNDFELDLLEINYNAKFNQLRHSQILGTLINELGIKRESMGDILVE-EGYAQL 137

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           ++   L +Y + ++ K+G  SV+  +IP+  L  E     S   + +SLR+D + ++  K
Sbjct: 138 MISHHLLNYFLGNISKIGRASVTLKKIPINQLIKEANEMTSTDILVSSLRIDLIMASVIK 197

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           +SRS+ +  I +  V+VN+  VT+    L  GD++SV G GR KI   N   K 
Sbjct: 198 ISRSQAMKFIESEKVKVNYRKVTRTSDNLALGDMISVRGYGRFKIESDNGLSKN 251


>gi|229019100|ref|ZP_04175935.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
 gi|229025344|ref|ZP_04181762.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
 gi|228735929|gb|EEL86506.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
 gi|228742200|gb|EEL92365.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
          Length = 241

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  +V     G  P++ER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ  V  E+A 
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIAVAKEVAS 124

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
           Y+  +L+ +G V VS T +    +     +        +SLR+D L +    +SR K+  
Sbjct: 125 YIEMNLQSIGKVKVSLTPVQAEQILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           LI  G V+VNW TV +       GD+ S+ G GR KI  +   T++ K+ +
Sbjct: 185 LIKGGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKIFSVEGKTKRDKWRI 235


>gi|116492942|ref|YP_804677.1| cell division protein [Pediococcus pentosaceus ATCC 25745]
 gi|116103092|gb|ABJ68235.1| Cell division protein, S4-like domain [Pediococcus pentosaceus ATCC
           25745]
          Length = 261

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           ++FL P         + +  ++K    GG+ +AE  R  +     + ++ D  V    I 
Sbjct: 36  TNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYFVPAEDDFSVRIFEIN 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H   LG+++  GI R   GDI+ Q E+  QF V  EL ++ +  ++++G +
Sbjct: 96  YPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERW-QFAVNGELENFFLNEIDRIGKI 154

Query: 219 SV-----SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
            V     S   I  +  ++EP      +T+ ASLR+D++ S GF +SR ++  LI    V
Sbjct: 155 KVKLIPTSTNDILKVQDDWEPVN----QTV-ASLRMDSIISTGFSISRHRVKELIEKRLV 209

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           ++NW    K  T +   D++SV   GRIK+ +I   T+K K  ++L
Sbjct: 210 QLNWMIDEKADTLIALNDVISVRKYGRIKLVDILGKTKKDKLKIQL 255


>gi|149184154|ref|ZP_01862478.1| S4 domain protein [Bacillus sp. SG-1]
 gi|148848138|gb|EDL62464.1| S4 domain protein [Bacillus sp. SG-1]
          Length = 258

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE-----RCRLSVGHPEALTSDPDIVAA 154
           +DFL P         + K +D+K      YP  E     RC L   + E   SD   V  
Sbjct: 35  TDFLDPRQQYILSAIIGKNSDIKM---SFYPAQESVERKRCILYPDYFEPSHSDYG-VTL 90

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
             I     F    H   LGS++  G+ REK GDI++  ++  Q +   E++D++  + ++
Sbjct: 91  FEINYPQKFVTLEHRQILGSLMSIGLKREKFGDILMNSDR-VQMITASEISDFVEMNFQE 149

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           VG   V+  ++PL  + +     +   T  +SLR+D + SA + +SR K+  LI+ G V+
Sbjct: 150 VGRNKVTLEKVPLDRMVHSSEEWREALTTVSSLRLDVILSALYNVSRQKVQTLIAGGVVK 209

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           VNW  V      +  GD+ S+ G GR K+  I   T+K KF +
Sbjct: 210 VNWRVVESPAFEVAEGDVFSMRGHGRSKLISIEGKTKKDKFRI 252


>gi|56419669|ref|YP_146987.1| hypothetical protein GK1134 [Geobacillus kaustophilus HTA426]
 gi|56379511|dbj|BAD75419.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 257

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +LE     S +     +DFL P   +          DV+A   GG P  ER R+ + 
Sbjct: 15  IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLA 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
            P     + D  +   ++     F    H D LG+++  G+ R + GDI+++ GE   QF
Sbjct: 75  PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGEFGDILIRDGE--IQF 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+ADY+   +E +G   V+   +PL A        +      +SLR+DA+ +  F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           L+R K   L+ +G V+VNW  V K       GD++S  G GR K+  +   T+K ++ V+
Sbjct: 193 LAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGPTKKERWLVQ 252

Query: 318 L 318
           +
Sbjct: 253 I 253


>gi|228909724|ref|ZP_04073547.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
 gi|228850013|gb|EEM94844.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
          Length = 255

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  +R +   +V  +DFL P   +   M + +  DV     G  P AER R ++ 
Sbjct: 15  VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HEMWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW  V +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|319649646|ref|ZP_08003802.1| hypothetical protein HMPREF1013_00406 [Bacillus sp. 2_A_57_CT2]
 gi|317398808|gb|EFV79490.1| hypothetical protein HMPREF1013_00406 [Bacillus sp. 2_A_57_CT2]
          Length = 257

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 105/220 (47%), Gaps = 5/220 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAALSI 157
           +DFL P   +     + + A +     GG P AER R  +  P+   SD  D  +    +
Sbjct: 34  TDFLDPREQQILKSVIGQHAGILFALFGGTPNAERKRALI-FPDYYESDEGDFQIRLFEL 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LGS++  G+ R K GDI+ + ++  QF    E+ DY+   L+ +G 
Sbjct: 93  EYPKKFVTIEHPQVLGSLMSLGLKRGKFGDILFEDDR-IQFFAAQEIEDYISLQLQSIGR 151

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            SVS  ++P           K      +SLR+D + SA + +SR K    I  G V+VNW
Sbjct: 152 ASVSLKKLPFSEAIQSAEVWKESSITSSSLRLDTVISAIYNISRQKSQLYIQQGLVKVNW 211

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           T +       +  DI+SV G+GR KI +I+  T+K K+ +
Sbjct: 212 TQIENPSFECQQSDIISVRGQGRSKIIDIDGKTKKDKWRI 251


>gi|423483488|ref|ZP_17460178.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
 gi|401141039|gb|EJQ48594.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
          Length = 255

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  D+     G  P++ER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVRFDGVMPESERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+  Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEQILQVSEKWGEKSGTVSSLRLDVLLAEMLH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +SR K+  LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 191 ISRQKVQPLIKNGLVKVNWKTVEQTSYECYPGDVYSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|422759405|ref|ZP_16813167.1| RNA binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
 gi|322412240|gb|EFY03148.1| RNA binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 263

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
           +M  R  S   +  +DFL P    +LK    +L    D+K  +   Y  +E  R+ V   
Sbjct: 24  DMINRVDSHYFLEVTDFLNPREITILK----SLVAPTDLKVFSSTDYYPSEYGRVIVVPD 79

Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
                + D  +A + IT    F   +HG  LG+++   GI R  +GDI +  E G AQ +
Sbjct: 80  YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRNLLGDIFV--ETGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  +L DY++T++ K+   SVS   IPL  L       +    + +SLR+D L +   K 
Sbjct: 138 INRQLLDYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++ + LI    V+VN+  V K    L  GD+VS+ G GR  +   N  T+ GK+ + L
Sbjct: 198 SRAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257


>gi|227893342|ref|ZP_04011147.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
 gi|227864757|gb|EEJ72178.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
          Length = 266

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E++ +DFL P   K +++      D      GGYP AE+ R+ +   E L+  P    
Sbjct: 34  KHELILTDFLDPG--KRAILKTIVGNDAFTQEYGGYPNAEKKRVYLSE-EWLSLRPSDYQ 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDI+  G+   QFL   EL ++    
Sbjct: 91  IQPYEIEYPQKFMQINHSAILGTLANSGINTDTFGDILTDGKGKWQFLAKKELTEFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 269
           + ++G   V     P+   E   P   S +  E  AS+R+DA+ S   K SR ++  +I+
Sbjct: 151 ITRIGKAQVKLK--PITFKEILIPEDDSVERTEIMASMRIDAILSGISKQSRGQIQKMIT 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +  V++NW  +  +   ++  D++S+   GRI I ++++TRKGK+ V L
Sbjct: 209 SHLVKLNWHDIADSNIMVKENDVLSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|317058533|ref|ZP_07923018.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684209|gb|EFS21044.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 257

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSD-----PDIVAALSITGNFGFQPCSHGDFLGSI 175
           +KAV  GGY  A R R+    PE L         D++  L +T        +H D+LG+ 
Sbjct: 53  IKAVFWGGYEGAMR-RILFFLPEYLEEHSYETFEDVLGVLEVTKLDKNLSLNHRDYLGAF 111

Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
            G G+ RE +GDI+++ E GA  +V+ E+   L+     VG  SV      L  L +   
Sbjct: 112 TGLGLKRETMGDILVR-ENGADLIVLKEMIPILLEEYCSVGKSSVQVQEKSLKKLIFVEE 170

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
             K  +   ASLR+D +    F LSR++    I  G V VN+    KN + +  GDI+ +
Sbjct: 171 NQKKERGTVASLRLDNVLCEIFNLSRTQAQEWIQKGSVYVNYVEKYKNESGIEAGDIIVL 230

Query: 296 SGKGRIKIGEINS-TRKGKFAVELIQY 321
            G G+ KI E  S T+K K  +  I+Y
Sbjct: 231 RGMGKAKIEETGSLTKKNKVPIYYIKY 257


>gi|52141591|ref|YP_085238.1| S4 domain-containing protein [Bacillus cereus E33L]
 gi|51975060|gb|AAU16610.1| S4 domain protein [Bacillus cereus E33L]
          Length = 255

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  D+     G   +AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEHHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|261419331|ref|YP_003253013.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC61]
 gi|319766147|ref|YP_004131648.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC52]
 gi|261375788|gb|ACX78531.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC61]
 gi|317111013|gb|ADU93505.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC52]
          Length = 257

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +LE     S +     +DFL P   +          DV+    GG P  ER R  + 
Sbjct: 15  IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI-ILQGEKGAQF 198
            P     + D  +   ++     F    H D LG+++  G+ R K GDI +L GE   QF
Sbjct: 75  PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVLDGE--IQF 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+ADY+   +E +G   V+   +PL A        +      +SLR+DA+ +  F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           L+R K   L+ +G V+VNW  V K       GD++S  G GR K+  +   T+K ++ V+
Sbjct: 193 LAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGPTKKERWLVQ 252

Query: 318 L 318
           +
Sbjct: 253 I 253


>gi|228928946|ref|ZP_04091978.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947617|ref|ZP_04109907.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812137|gb|EEM58468.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830753|gb|EEM76358.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 241

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  D+     G   +AER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            LI NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|311029944|ref|ZP_07708034.1| RNA binding protein [Bacillus sp. m3-13]
          Length = 258

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P   +     +    DVK    GG   AER R  +  P    +  D  + A  ++
Sbjct: 35  TDFLDPREQEIVKSVVGNNEDVKLAFHGGANGAERKRALLYPPYLEPTAEDFGLKAYDLS 94

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H   LGS++G G+ R K GDI    +   Q ++  E++ ++   L++VG V
Sbjct: 95  YPEKFVKIEHRQVLGSLMGIGLKRSKFGDIYFH-DSSIQIVLSAEVSAFVEMQLQEVGKV 153

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
            VS   +PL  LE      +   T  ASLR+D + ++ + LSR K   LI    V++NW 
Sbjct: 154 KVSLNELPLENLESTETSWEEASTTAASLRLDVMIASIYNLSRQKAQLLIGAKKVKINWK 213

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
            V +     + GDI+SV G GR K+  ++  T+K K+ +
Sbjct: 214 LVEQTAFECQEGDILSVRGFGRSKLLTVDGKTKKDKWRI 252


>gi|30263899|ref|NP_846276.1| S4 domain-containing protein [Bacillus anthracis str. Ames]
 gi|47529329|ref|YP_020678.1| s4 domain-containing protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186747|ref|YP_029999.1| S4 domain-containing protein [Bacillus anthracis str. Sterne]
 gi|65321226|ref|ZP_00394185.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
           [Bacillus anthracis str. A2012]
 gi|165872308|ref|ZP_02216945.1| S4 domain protein [Bacillus anthracis str. A0488]
 gi|167641130|ref|ZP_02399385.1| S4 domain protein [Bacillus anthracis str. A0193]
 gi|170708812|ref|ZP_02899248.1| S4 domain protein [Bacillus anthracis str. A0389]
 gi|177654925|ref|ZP_02936642.1| S4 domain protein [Bacillus anthracis str. A0174]
 gi|190566209|ref|ZP_03019128.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
 gi|227813193|ref|YP_002813202.1| S4 domain-containing protein [Bacillus anthracis str. CDC 684]
 gi|229601099|ref|YP_002868133.1| S4 domain protein [Bacillus anthracis str. A0248]
 gi|254735937|ref|ZP_05193643.1| S4 domain protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254751005|ref|ZP_05203044.1| S4 domain protein [Bacillus anthracis str. Vollum]
 gi|254757937|ref|ZP_05209964.1| S4 domain protein [Bacillus anthracis str. Australia 94]
 gi|421507439|ref|ZP_15954359.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
 gi|30258543|gb|AAP27762.1| S4 domain protein [Bacillus anthracis str. Ames]
 gi|47504477|gb|AAT33153.1| S4 domain protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180674|gb|AAT56050.1| S4 domain protein [Bacillus anthracis str. Sterne]
 gi|164711984|gb|EDR17524.1| S4 domain protein [Bacillus anthracis str. A0488]
 gi|167510910|gb|EDR86301.1| S4 domain protein [Bacillus anthracis str. A0193]
 gi|170126297|gb|EDS95188.1| S4 domain protein [Bacillus anthracis str. A0389]
 gi|172080436|gb|EDT65523.1| S4 domain protein [Bacillus anthracis str. A0174]
 gi|190563128|gb|EDV17094.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
 gi|227003302|gb|ACP13045.1| S4 domain protein [Bacillus anthracis str. CDC 684]
 gi|229265507|gb|ACQ47144.1| S4 domain protein [Bacillus anthracis str. A0248]
 gi|401822573|gb|EJT21723.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
          Length = 255

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  D+     G   +AER R  + 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|229061503|ref|ZP_04198847.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
 gi|229134707|ref|ZP_04263516.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
 gi|423367942|ref|ZP_17345374.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
 gi|423489074|ref|ZP_17465756.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
 gi|423494799|ref|ZP_17471443.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
 gi|423498409|ref|ZP_17475026.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
 gi|423511932|ref|ZP_17488463.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
 gi|423518589|ref|ZP_17495070.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
 gi|423598791|ref|ZP_17574791.1| hypothetical protein III_01593 [Bacillus cereus VD078]
 gi|423661263|ref|ZP_17636432.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
 gi|423669472|ref|ZP_17644501.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
 gi|423674349|ref|ZP_17649288.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
 gi|228648753|gb|EEL04779.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
 gi|228717737|gb|EEL69387.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
 gi|401082803|gb|EJP91068.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
 gi|401150892|gb|EJQ58344.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
 gi|401160458|gb|EJQ67836.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
 gi|401160797|gb|EJQ68172.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
 gi|401237061|gb|EJR43518.1| hypothetical protein III_01593 [Bacillus cereus VD078]
 gi|401298599|gb|EJS04199.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
 gi|401301304|gb|EJS06893.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
 gi|401309900|gb|EJS15233.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
 gi|402432322|gb|EJV64381.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
 gi|402450193|gb|EJV82027.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
          Length = 255

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+  Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +SR K+  LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 191 ISRQKVQPLIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249


>gi|118479118|ref|YP_896269.1| S4 domain-containing protein [Bacillus thuringiensis str. Al Hakam]
 gi|167636417|ref|ZP_02394716.1| S4 domain protein [Bacillus anthracis str. A0442]
 gi|170688819|ref|ZP_02880022.1| S4 domain protein [Bacillus anthracis str. A0465]
 gi|196038619|ref|ZP_03105927.1| S4 domain protein [Bacillus cereus NVH0597-99]
 gi|196045924|ref|ZP_03113153.1| S4 domain protein [Bacillus cereus 03BB108]
 gi|225865879|ref|YP_002751257.1| S4 domain protein [Bacillus cereus 03BB102]
 gi|254683393|ref|ZP_05147253.1| S4 domain protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721431|ref|ZP_05183220.1| S4 domain protein [Bacillus anthracis str. A1055]
 gi|254739815|ref|ZP_05197508.1| S4 domain protein [Bacillus anthracis str. Kruger B]
 gi|301055388|ref|YP_003793599.1| RNA-binding S4 domain-containing protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|376267794|ref|YP_005120506.1| hypothetical protein bcf_19360 [Bacillus cereus F837/76]
 gi|421639653|ref|ZP_16080244.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
 gi|423550354|ref|ZP_17526681.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
 gi|118418343|gb|ABK86762.1| S4 domain protein [Bacillus thuringiensis str. Al Hakam]
 gi|167528159|gb|EDR90946.1| S4 domain protein [Bacillus anthracis str. A0442]
 gi|170667174|gb|EDT17934.1| S4 domain protein [Bacillus anthracis str. A0465]
 gi|196023364|gb|EDX62042.1| S4 domain protein [Bacillus cereus 03BB108]
 gi|196030342|gb|EDX68941.1| S4 domain protein [Bacillus cereus NVH0597-99]
 gi|225787031|gb|ACO27248.1| S4 domain protein [Bacillus cereus 03BB102]
 gi|300377557|gb|ADK06461.1| RNA-binding S4 domain protein [Bacillus cereus biovar anthracis
           str. CI]
 gi|364513594|gb|AEW56993.1| Hypothetical protein, contains S4- like RNA binding domain
           [Bacillus cereus F837/76]
 gi|401189970|gb|EJQ97020.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
 gi|403393318|gb|EJY90563.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
          Length = 255

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  D+     G   +AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|49478438|ref|YP_037959.1| S4 domain-containing protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329994|gb|AAT60640.1| S4 domain protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 255

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  D+     G    AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSHAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           +V  E+  Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +   
Sbjct: 131 VVAKEVVSYIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEML 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 190 HISRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249


>gi|300361463|ref|ZP_07057640.1| S4 domain protein [Lactobacillus gasseri JV-V03]
 gi|300354082|gb|EFJ69953.1| S4 domain protein [Lactobacillus gasseri JV-V03]
          Length = 265

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 149
           + E + +DFL P    + +E +    +L        GG+  AE+ RL +    +A     
Sbjct: 34  KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWIQAYEPSM 88

Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
             +    I     +   +H   LG +   GI  +  GDII       QF V  EL +Y +
Sbjct: 89  FKITLFEIAYPHKWAKLTHSQILGVLTHLGIKLDTFGDIINDENGTWQFFVKTELKNYFL 148

Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 269
             + +VG   V     PL  +  +   +K    I  SLR+DA+ SA   LSRS++  +I 
Sbjct: 149 EQVTRVGRTKVKLHEFPLSKVLVQEDDSKELSVITISLRLDAVVSAVTNLSRSQVKKMIE 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +G+V++NW  V ++   +   D++S+   GR +I  + +T+KGK  +E+
Sbjct: 209 DGEVKLNWHLVAQSNIIVSVQDMLSIRHYGRYEIINLTTTKKGKKRLEI 257


>gi|429204845|ref|ZP_19196126.1| RNA binding protein [Lactobacillus saerimneri 30a]
 gi|428146707|gb|EKW98942.1| RNA binding protein [Lactobacillus saerimneri 30a]
          Length = 264

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           ++FL P +   +   + +  DV+    GGY  AER R ++ +PE  T ++ D  V  L I
Sbjct: 36  TEFLDPRMQYIAQSLVGQRDDVRVSFFGGYANAERKR-ALFYPEYFTPTEADFKVVPLEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +HG  LG+ +  G+ R  +GDII  G++  Q LV  +LA YL+  +++VG 
Sbjct: 95  GYPQKFSQLAHGQILGTFVNAGLDRNVLGDIITDGQRW-QILVNQDLAAYLVGQIDRVGK 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           + V   ++ L  L            +  +S R+D++ +  + +SR    +LI    V +N
Sbjct: 154 IKVRLQQLSLADLLTPQADDAELMVLNLSSSRLDSVIAGAYNISRKSAKDLIKEKRVHLN 213

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           W  V K    +   DI+SV   GRIK+G +   TRK K  +E+
Sbjct: 214 WMMVEKPDLEIGEHDILSVRRYGRIKVGPVLGITRKDKIRLEV 256


>gi|423522271|ref|ZP_17498744.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
 gi|401176020|gb|EJQ83219.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
          Length = 255

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNKEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+  Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMMH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           +SR K+  LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 191 ISRQKVQPLIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGRTKRDKWRV 249


>gi|251782907|ref|YP_002997210.1| hypothetical protein SDEG_1501 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391537|dbj|BAH81996.1| hypothetical protein SDEG_1501 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 263

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHP 142
           +M  R  S   +  +DFL P      +  L+ LA   D+K  +   Y  +E  R+ V   
Sbjct: 24  DMINRVDSHYLLEVTDFLNP----REITILKSLAVPTDLKVFSSTDYYPSEYGRVIVAPD 79

Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
                + D  +A + IT    F   +HG  LG+++   GI R  +GDI +  E G AQ +
Sbjct: 80  YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  +L  Y++T++ K+   SVS   IPL  L       +    + +SLR+D L +   K 
Sbjct: 138 INRQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++ + LI    V+VN+  V K    L  GD+VS+ G GR  +   N  T+ GK+ + L
Sbjct: 198 SRAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257


>gi|410458071|ref|ZP_11311835.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
           9581]
 gi|409931896|gb|EKN68870.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
           9581]
          Length = 257

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 5/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LS 138
           +  I+E   + ++       DF  P  +      +    +VK    GGY QAER R  L 
Sbjct: 15  IDQIIEWREQVANEYTYKLLDFYDPREIDIVQRIIGSKEEVKCAFWGGYDQAERKRAILY 74

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             + E    D DIV   SI     F    H   LGS +G G+ R K GDII+  +  AQ 
Sbjct: 75  PEYYEVQNEDFDIVV-FSINFPSKFVTLDHRKVLGSTMGLGLKRSKFGDIIIDKD-AAQI 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V  ++A+Y+    ++VG  +V+  +I    +              +S+R+D + +  F 
Sbjct: 133 IVASQVAEYVRLHFKQVGKTNVTLEQIECENIISMNEEWHEHTCTVSSMRLDVILAEVFN 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           LSR+K++  I N  V+VNW            GD +S+   GR K+  I   T+K K+ +
Sbjct: 193 LSRTKVLPYIQNQMVKVNWKVTDDPSFLCHQGDTLSMRTFGRCKVKRIEGQTKKEKWRI 251


>gi|406664686|ref|ZP_11072461.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
 gi|405387534|gb|EKB46958.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           ++ ++   R    R     +DFL P    + ES+  +++  D+    +G + +AER R+ 
Sbjct: 16  IEQVIGWQREVEDRYAPKLTDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRML 73

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +       ++ D  +A  S+     F    H D LG++L  G+ R K GDI L  +   Q
Sbjct: 74  IAPSYYEPAEADFQIAVYSLNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL-ADNTVQ 132

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALA 253
           F +  E++DY+  +L  +G V VS   +    P +  + E    +S  T+ +S+R+D + 
Sbjct: 133 FAIASEISDYVRANLTSIGKVKVSAEEMDPNTPFI--QNEEQWVESSHTV-SSMRLDVVL 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           +    +SR K  +LI+ G V+VNWT        L+ GDI+S  G GR+K+
Sbjct: 190 ATIVNISRQKSQSLINAGKVKVNWTVREAVAFELQEGDIISARGYGRLKV 239


>gi|163941637|ref|YP_001646521.1| RNA-binding S4 domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163863834|gb|ABY44893.1| RNA-binding S4 domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 255

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R ++ 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVVVRFDGAMPEAERKR-ALI 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+  Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +SR K+  LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 191 ISRQKVQPLIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249


>gi|393201812|ref|YP_006463654.1| hypothetical protein SSIL_3085 [Solibacillus silvestris StLB046]
 gi|327441143|dbj|BAK17508.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           ++ ++   R    R     +DFL P    + ES+  +++  D+    +G + +AER R+ 
Sbjct: 16  IEQVIGWQREVEDRYAPKLTDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRML 73

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +       ++ D  +A  S+     F    H D LG++L  G+ R K GDI L  +   Q
Sbjct: 74  IAPSYYEPAEADFQIAVYSLNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL-ADNTVQ 132

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLA--LEYEPPRTKSFKTIEASLRVDALASA 255
           F +  E++DY+  +L  +G V VS   +      ++ E    +S  T+ +S+R+D + + 
Sbjct: 133 FAIASEISDYVRANLTSIGKVKVSAEEMDPTTPFIQNEEQWVESSHTV-SSMRLDVVLAT 191

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
              +SR K  +LI+ G V+VNWT        L+ GDI+S  G GR+K+
Sbjct: 192 IVNISRQKSQSLINAGKVKVNWTVREAVAFELQEGDIISARGYGRLKV 239


>gi|325956507|ref|YP_004291919.1| cell-division protein [Lactobacillus acidophilus 30SC]
 gi|385817397|ref|YP_005853787.1| cell-division protein [Lactobacillus amylovorus GRL1118]
 gi|325333072|gb|ADZ06980.1| cell-division protein [Lactobacillus acidophilus 30SC]
 gi|327183335|gb|AEA31782.1| cell-division protein [Lactobacillus amylovorus GRL1118]
          Length = 266

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-- 151
           + E + +DFL P   K  ++      D      GGY  AE+ R+ +   E +   PD   
Sbjct: 34  KHESILTDFLDPA--KRDILKTIVGNDAFIQEYGGYSDAEKKRVFLSE-EWVNLRPDAYQ 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDII  G    QF    ELAD+    
Sbjct: 91  IQPYEIDYPQKFIQINHSAVLGTLANSGIDTDTFGDIITDGNGKWQFFAKKELADFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 269
           ++++G   V     P+   E   P   S +  E  AS+R+DA+ S   K SR ++  +I+
Sbjct: 151 IDRIGRAQVKLK--PITFKEVLVPEDDSSEKTEIVASMRIDAVLSGISKQSRGQIQKMIN 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +  V++NW  V  +   ++  D++S+   GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHDVIDSNIMVKENDVLSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|386317425|ref|YP_006013589.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
 gi|417752513|ref|ZP_12400709.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
           SK1249]
 gi|417927506|ref|ZP_12570894.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
           SK1250]
 gi|323127712|gb|ADX25009.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
 gi|333771711|gb|EGL48627.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
           SK1249]
 gi|340765380|gb|EGR87906.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
           SK1250]
          Length = 263

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHP 142
           +M  R  S   +  +DFL P      +  L+ LA   D+K  +   Y  +E  R+ V   
Sbjct: 24  DMINRVDSHYLLEVTDFLNP----REITILKSLAAPTDLKVFSSTDYYPSEYGRVIVAPD 79

Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
                + D  +A + IT    F   +HG  LG+++   GI R  +GDI +  E G AQ +
Sbjct: 80  YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  +L  Y++T++ K+   SVS   IPL  L       +    + +SLR+D L +   K 
Sbjct: 138 INRQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++ + LI    V+VN+  V K    L  GD+VS+ G GR  +   N  T+ GK+ + L
Sbjct: 198 SRAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257


>gi|374337559|ref|YP_005094264.1| hypothetical protein SMA_0566 [Streptococcus macedonicus ACA-DC
           198]
 gi|372283664|emb|CCF01857.1| Hypothetical protein, contains S4-like RNA binding domain
           [Streptococcus macedonicus ACA-DC 198]
          Length = 263

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 15/241 (6%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA---VAQGGYPQAERCRL 137
           ++ I ++ARR         +DFL    L++  +A   + + +    V+   YP AE  RL
Sbjct: 19  IEKIDDLARRVEETYAYALTDFLN---LRQVDIAKSVIGNRRLHYFVSSDYYP-AEYARL 74

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
            V  P+    +P+   +  L +  N  F   +H   +G++L   GI R  IGDI++  E 
Sbjct: 75  IVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ES 131

Query: 195 G-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
           G AQ LV   +ADY   ++ K+   SVS   IPL  L      ++    I +S+R+D + 
Sbjct: 132 GYAQLLVKQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMRMDKVL 191

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKG 312
           +    LSRS+ V LI    V++N+  V +    L+ GD++SV G GR  I  E   T+ G
Sbjct: 192 ATVLNLSRSQAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGFTKNG 251

Query: 313 K 313
           K
Sbjct: 252 K 252


>gi|28211284|ref|NP_782228.1| RNA binding protein [Clostridium tetani E88]
 gi|28203724|gb|AAO36165.1| RNA binding protein [Clostridium tetani E88]
          Length = 258

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           DK+ I  +   + +  + +S   V++++   PP + +++  L     +K  + G + +AE
Sbjct: 16  DKSLISSIYDKILLCEKINS---VVYTEEFYPPNIWKAIENLSHHLSIKVYSSGVFKEAE 72

Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           R R+    P+ +   P  V  L I     F P  H D++G I+  GI R K+GD IL+ +
Sbjct: 73  R-RMLAFSPDEVWYYP--VDLLKIENGSKFLPLRHKDYMGGIMSLGIKRYKLGDFILK-D 128

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
                 V   L++Y++ +L  +G      +++ L   E      +    I  SLR+D++ 
Sbjct: 129 NVCYVAVCQSLSEYIVNNLTSIGRNPCIVSKLDLFTKELPNYEFEDINIIITSLRMDSVV 188

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKG 312
           ++   LSRSK   LI +G V +++ TV      ++   I+++ G G+ K I EI  T +G
Sbjct: 189 ASLANLSRSKGEELIQSGKVLLDYLTVKDKAKVVKPNSIITIRGLGKFKFICEIGETNRG 248

Query: 313 KFAV 316
           +  V
Sbjct: 249 RIKV 252


>gi|390630014|ref|ZP_10258004.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
 gi|390484805|emb|CCF30352.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
          Length = 261

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 8/237 (3%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
           + R+A      + ++FL P         + +  ++K    GGY  AE  R S+  P+   
Sbjct: 23  LIRQALDEYRPVLTNFLNPRQRYILETLVNQHDELKIAHSGGYTDAESAR-SLIAPDYYD 81

Query: 147 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 204
              D   +AA+ I     F    H   LG+++  G++R+  GDII   E   Q +   ++
Sbjct: 82  VQQDDFEIAAIRINYPTKFAELHHSTVLGTLINNGLSRDSFGDIISSEEGDWQIVATEQM 141

Query: 205 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRS 262
           A ++ +SL+ VG   V     P++  +   P+ +     T  +SLR+D + + G+ +SR+
Sbjct: 142 ARFITSSLDHVGKTKVRFE--PMMLADIVTPQEEWDDINTTVSSLRLDTIVANGYNVSRT 199

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 318
               L+  G VRVNWT + +    L   D++SV   GR+K + E   T+K K+ V L
Sbjct: 200 HAKELVERGMVRVNWTEIDRPDFMLAVNDLISVRRFGRMKLLAENGITKKDKWRVTL 256


>gi|408402039|ref|YP_006860003.1| hypothetical protein GGS_1370 [Streptococcus dysgalactiae subsp.
           equisimilis RE378]
 gi|407968268|dbj|BAM61506.1| hypothetical protein GGS_1370 [Streptococcus dysgalactiae subsp.
           equisimilis RE378]
          Length = 263

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHP 142
           +M  R  S   +  +DFL P      +  L+ LA   D+K  +   Y  +E  R+ V   
Sbjct: 24  DMINRVDSHYLLEVTDFLNP----REITILKSLAVPTDLKVFSSTDYYPSEYGRVIVAPD 79

Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
                + D  +A + IT    F   +HG  LG+++   GI R  +GDI +  E G AQ +
Sbjct: 80  YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  +L  Y++T++ K+   SVS   IPL  L       +    + +SLR+D L +   K 
Sbjct: 138 INWQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++ + LI    V+VN+  V K    L  GD+VS+ G GR  +   N  T+ GK+ + L
Sbjct: 198 SRAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257


>gi|320546327|ref|ZP_08040646.1| S4 domain-containing protein YlmH [Streptococcus equinus ATCC 9812]
 gi|320449048|gb|EFW89772.1| S4 domain-containing protein YlmH [Streptococcus equinus ATCC 9812]
          Length = 261

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I ++A+R         +DFL P  L+ +   L        V+   YP AE  RL V 
Sbjct: 17  IEKIDDIAQRVEETYAYSLTDFLNPRQLEIARSVLGNRGLRYFVSSDYYP-AEYARLLVA 75

Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKG-A 196
            P+   L  D   +A L +  N  F   +H   +G++L   GI R  IGDI++  E G A
Sbjct: 76  -PDYYELNLDDFELALLEVKYNSKFNQLTHAQIMGTLLNRLGIKRHIIGDILV--ESGYA 132

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q LV   + DY   ++ K+   SV+   IPL  L      ++    + +S+R+D + +  
Sbjct: 133 QLLVTRNMVDYFRANVTKIAKASVNLKEIPLDNLIVGEKESQQLDIMVSSMRLDKVLATV 192

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN---STRKGK 313
            KLSRS+ + L++   V++N+ ++ +    L+ GD++SV G GR  I   N     RK K
Sbjct: 193 LKLSRSQAIQLVNAEKVKLNYQSIDRPSEILQVGDLISVRGFGRFSILSENGLTKNRKIK 252

Query: 314 FAVE 317
             V+
Sbjct: 253 LTVD 256


>gi|423592106|ref|ZP_17568137.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
 gi|401232239|gb|EJR38741.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
          Length = 255

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R  + 
Sbjct: 15  VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+  Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    
Sbjct: 131 AVAKEVVSYIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLH 190

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           +SR K+  LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 191 ISRQKVQPLIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249


>gi|297530699|ref|YP_003671974.1| RNA-binding S4 domain-containing protein [Geobacillus sp. C56-T3]
 gi|297253951|gb|ADI27397.1| RNA-binding S4 domain protein [Geobacillus sp. C56-T3]
          Length = 257

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +LE     S +     +DFL P   +          DV+    GG P  ER R  + 
Sbjct: 15  IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
            P     + D  +   ++     F    H D LG+++  G+ R K GDI+++ GE   QF
Sbjct: 75  PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVRDGE--IQF 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+ADY+   +E +G   V+   +PL A        +      +SLR+DA+ +  F+
Sbjct: 133 FVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           L+R K   L+ +G V+VNW  V K       GD++S  G GR K+  +   T+K ++ V+
Sbjct: 193 LAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGPTKKERWLVQ 252

Query: 318 L 318
           +
Sbjct: 253 I 253


>gi|448237302|ref|YP_007401360.1| putative RNA-binding protein [Geobacillus sp. GHH01]
 gi|445206144|gb|AGE21609.1| putative RNA-binding protein [Geobacillus sp. GHH01]
          Length = 257

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +LE     S +     +DFL P   +          DV+    GG P  ER R  + 
Sbjct: 15  IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQF 198
            P     + D  +   ++     F    H D LG+++  G+ R K GDI+++ GE   QF
Sbjct: 75  PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVRDGE--IQF 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+ADY+   +E +G   V+   +PL A        +      +SLR+DA+ +  F+
Sbjct: 133 FVAAEVADYVRLHIEMIGKARVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFR 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           L+R K   L+ +G V+VNW  V K       GD++S  G GR K+  +   T+K ++ V+
Sbjct: 193 LAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGPTKKERWLVQ 252

Query: 318 L 318
           +
Sbjct: 253 I 253


>gi|229092943|ref|ZP_04224076.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
 gi|229123411|ref|ZP_04252615.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
 gi|229186138|ref|ZP_04313307.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
 gi|228597314|gb|EEK54965.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
 gi|228660187|gb|EEL15823.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
 gi|228690447|gb|EEL44231.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
          Length = 241

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  D+     G   +AER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|160880492|ref|YP_001559460.1| RNA-binding S4 domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160429158|gb|ABX42721.1| RNA-binding S4 domain protein [Clostridium phytofermentans ISDg]
          Length = 263

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 23/257 (8%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ILE A+ A  +   +++DFL    +       ++L  +     GGY  AER R+   H
Sbjct: 12  KIILESAKSAYHKEICVYTDFLNINEISIFHSMEKELPLLAYSMYGGYEGAERVRICF-H 70

Query: 142 PEALTSDPDIVAALSITGNFGFQ-----PCS--------HGDFLGSILGTGIAREKIGDI 188
            + +    +I+       ++  Q     P S        H D+LG+IL  GI R K+GDI
Sbjct: 71  GDMVKEHGNIMLQTEDKNDYPIQCLRIYPASEKFAGELDHRDYLGAILNVGIERSKLGDI 130

Query: 189 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---A 245
           +++G K A       L+D++ TSL KV +   +  R+ ++  + E   T SF+ +    A
Sbjct: 131 LVRG-KEAYCYCDSLLSDFITTSLSKVRH---NVVRVEMIKPD-EVQATISFREVTGSVA 185

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           S R+D+L +  F  SRS +  LI+   V VN   VT N   L+  DIVSV G G+ K  E
Sbjct: 186 SFRLDSLIALAFHTSRSSITGLIAGEKVFVNARLVTSNSYMLKPDDIVSVRGYGKFKFKE 245

Query: 306 INS-TRKGKFAVELIQY 321
               ++KG+    L  Y
Sbjct: 246 QGGISKKGRIYATLSIY 262


>gi|347531807|ref|YP_004838570.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
 gi|345501955|gb|AEN96638.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
          Length = 250

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K +L+++R+A  +  VL SDFL    L     + EKL   +    GG P AER ++    
Sbjct: 9   KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQS-EKLFATRTECFGGIPCAER-QMIAFL 66

Query: 142 PEALTSDPDI-VAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL  D +  ++AL IT  +    +   H D LGS++  G+ R K+GDI++ GE+ A  
Sbjct: 67  PDALYYDWEYPISALKITPAYPKFAEKLGHRDILGSLMQLGVDRCKLGDILV-GEQEAYL 125

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT---IEASLRVDALASA 255
           L    +ADY    LEK+ +  V      L  L+     T+ F+T   I  S R+DA+ + 
Sbjct: 126 LCEETVADYFAEHLEKIRHTLVKVEPCSLSDLKV----TQEFQTQDGIVTSDRIDAVVAC 181

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKF 314
            + LSRS+   L+    V V+   +     T    DI+SV G GR I  GE  +T KG+ 
Sbjct: 182 VYHLSRSQASLLLRQEKVFVSGKLIQNPSYTCHADDIISVRGYGRFIYRGEYGTTGKGRL 241

Query: 315 AVELIQY 321
            +    Y
Sbjct: 242 KIHYDLY 248


>gi|228916535|ref|ZP_04080101.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935213|ref|ZP_04098039.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824378|gb|EEM70184.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228843114|gb|EEM88196.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 241

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  D+     G   +AER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|229013082|ref|ZP_04170247.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
 gi|228748336|gb|EEL98196.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
          Length = 241

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ  V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
           Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    +SR K+  
Sbjct: 125 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 185 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 235


>gi|386737720|ref|YP_006210901.1| S4 domain-containing protein [Bacillus anthracis str. H9401]
 gi|384387572|gb|AFH85233.1| S4 domain protein [Bacillus anthracis str. H9401]
          Length = 241

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  D+     G   +AER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ +V  E+  
Sbjct: 66  EEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           Y+  +L+ +G V VS + +     L+ +    +   T+ +SLR+D + +    +SR K+ 
Sbjct: 125 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235


>gi|315038055|ref|YP_004031623.1| cell-division protein [Lactobacillus amylovorus GRL 1112]
 gi|312276188|gb|ADQ58828.1| cell-division protein [Lactobacillus amylovorus GRL 1112]
          Length = 266

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K  ++      D      GGY  AE+ R+ +   E +   PD   
Sbjct: 34  KHESILTDFLDPA--KRDILKTIVGNDAFIQEYGGYSDAEKKRVFLSE-EWVNLRPDDYQ 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDII  G    QF    ELAD+    
Sbjct: 91  IQPYEIDYPQKFIQINHSAVLGTLANSGIDTDTFGDIITDGNGKWQFFAKKELADFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 269
           ++++G   V     P+   E   P   S +  E  AS+R+DA+ S   K SR ++  +I+
Sbjct: 151 IDRIGRAQVKLK--PITFKEVLVPEDDSSEKTEIVASMRIDAVLSGISKQSRGQIQKMIN 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +  V++NW  V  +   ++  D++S+   GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHDVIDSNIMVKENDVLSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|423470111|ref|ZP_17446855.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
 gi|423558540|ref|ZP_17534842.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
 gi|401191808|gb|EJQ98830.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
 gi|402437363|gb|EJV69387.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
          Length = 255

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R ++ +P+ L  +
Sbjct: 22  KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ  V  E+  
Sbjct: 80  EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
           Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    +SR K+  
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249


>gi|354558730|ref|ZP_08977984.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
           DSM 15288]
 gi|353545792|gb|EHC15242.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
           DSM 15288]
          Length = 265

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 10/246 (4%)

Query: 80  EVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAER-CR 136
           E  H+L++A  A      + + FL   + +  E ++  E L+     AQGG+  +ER C 
Sbjct: 21  EAAHLLDLADEAIDNSLSVRTPFLGLSLAQWFEGVIQKESLS---YKAQGGFSDSERVCY 77

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
               + + L    + +  L +          H   LGS++G G+ RE IGDI   G +G 
Sbjct: 78  FLGQNGQDLDQVQNGITLLEVLSTDPHVALEHRQILGSLMGLGLKRELIGDI-HSGIRGM 136

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASA 255
              VV E+ADYL+      G  ++   R+   L L  +P   +      AS R+DA+ ++
Sbjct: 137 IVAVVDEIADYLLQEWRMAGRANIRVERVQGELNLREDPGEERRITV--ASSRIDAIVAS 194

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFA 315
           GF ++R  +   I  G ++ N   ++K    +++GD++S  G GR+++ + + TRKG+  
Sbjct: 195 GFNVARGVVQEWIRQGKIKRNDLMISKPDLEVKSGDVISCRGYGRLRLRDASETRKGRIG 254

Query: 316 VELIQY 321
             +I +
Sbjct: 255 WSIIVF 260


>gi|407977672|ref|ZP_11158509.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
 gi|407415925|gb|EKF37506.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
          Length = 258

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +L   + A  +  +  +DFL P     +   ++   ++  +  GGY +AER R ++ 
Sbjct: 16  VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHSDELGIMFFGGYEKAERKR-ALI 74

Query: 141 HPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           +P+ L  +P I    ++   +     F    H   LGS++GTG+ R+K GD++   +   
Sbjct: 75  YPDYL--EPSIQDFELSYFQVNYAKKFISIEHPKLLGSLIGTGLKRQKFGDLLFLDD-DV 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           +F+   ++AD++   L  VG  SVS   I    ++    +T   +   +SLR+DA+ +A 
Sbjct: 132 KFICTSDVADFVRAQLTHVGRASVSLEEISQTDIKPVISKTDIKEDTISSLRLDAVCAAV 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFA 315
            + SR K   L+ NG V+VNW        T+  GD +SV G GR  +  I+  T+K KF 
Sbjct: 192 SRQSRQKAQLLVKNGLVKVNWKVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFK 251

Query: 316 V 316
           V
Sbjct: 252 V 252


>gi|228940986|ref|ZP_04103544.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973917|ref|ZP_04134492.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980506|ref|ZP_04140816.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
 gi|384187958|ref|YP_005573854.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
           CT-43]
 gi|410676273|ref|YP_006928644.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
 gi|452200339|ref|YP_007480420.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
           thuringiensis str. IS5056]
 gi|228779326|gb|EEM27583.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
 gi|228785783|gb|EEM33787.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818665|gb|EEM64732.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941667|gb|AEA17563.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
           CT-43]
 gi|409175402|gb|AFV19707.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
 gi|452105732|gb|AGG02672.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
           thuringiensis str. IS5056]
          Length = 255

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V  +LE  ++ +   +V  +DFL P   +   M + +  D      G  P AER R  + 
Sbjct: 15  VDKVLEW-KQTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDGAVQFGGATPNAERKRALI- 71

Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+ L  + +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ 
Sbjct: 72  YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQI 130

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+  Y+  +L+ +G V VS + +    +L + +E    KS     +SLR+D + + 
Sbjct: 131 VVAKEIVSYIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
              LSR K+   I NG V+VNW TV +       GD+ SV G GR K+  +   T++ K+
Sbjct: 188 MLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKW 247

Query: 315 AV 316
            +
Sbjct: 248 RI 249


>gi|395242913|ref|ZP_10419901.1| S4 domain protein [Lactobacillus hominis CRBIP 24.179]
 gi|394484733|emb|CCI80909.1| S4 domain protein [Lactobacillus hominis CRBIP 24.179]
          Length = 266

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 21/249 (8%)

Query: 80  EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRL 137
           EV +   +  R   ++E + +DF+ P      M   +++   + +    GGY  AE+ R 
Sbjct: 21  EVDYYTGLFNRLIYQQEPILTDFINP----RQMYIFKEIVGNEAQIYHDGGYKNAEKQR- 75

Query: 138 SVGHPEALTSDPDI--------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
                 AL  D +         V  L I  N  +   +H   LG +  +G+     GDII
Sbjct: 76  ------ALLCDWNAPYNLEHFEVQPLQIEYNKKWDKLTHSQILGVLANSGVEISSFGDII 129

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
              E   Q  V  +L D+ I ++ ++G   V    I    +        S   +  SLR+
Sbjct: 130 NDEEDNWQIFVKKDLTDFFIRNITRIGRSKVKLKPISRNEVLNVADDATSKSAVSISLRL 189

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST 309
           DA+ ++   +SRS++   I+NG++++NW  V ++   +   DI+S+   GRI++ +I+ T
Sbjct: 190 DAVIASAANMSRSQVKESINNGNIKLNWHVVQESNIIVNVYDILSIRHFGRIQLEKISHT 249

Query: 310 RKGKFAVEL 318
            KGK+ +E 
Sbjct: 250 SKGKYRLEF 258


>gi|323486919|ref|ZP_08092235.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
           WAL-14163]
 gi|323399782|gb|EGA92164.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
           WAL-14163]
          Length = 251

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 12/255 (4%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQ 131
           DK+     K I E+A     R    ++DFLT     +  SM     L  V  +  GGY  
Sbjct: 3   DKDEQLLKKRISELAALCYQRDIRSYTDFLTLNEQTIFHSMK--RTLPPVTWLMGGGYET 60

Query: 132 AER---CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
           AER   C L     E       I+ A+  +  F  +  +H DFLG+I+  GI+R  IGDI
Sbjct: 61  AERKIVCFLPSYEDETADLSISILEAVPASPRFA-EALTHRDFLGAIMNLGISRSCIGDI 119

Query: 189 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 248
           ++  E G     + ++A +LI  L+ V +  VSC   P        P  ++     AS R
Sbjct: 120 LMN-ENGCFIFCLEKMAPFLIQELKMVRHTQVSCR--PATQALAAAPNCETVSGSVASPR 176

Query: 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEIN 307
           +D++ S  FK SRSK +  I    V ++       G  L+ G+I+SV G G+ +  G  N
Sbjct: 177 LDSVISLVFKTSRSKTLPFIEGERVFIDGRLCISPGRQLKEGEIISVRGLGKFRYTGAGN 236

Query: 308 STRKGKFAVELIQYL 322
            T+KG+F V   +Y+
Sbjct: 237 QTKKGRFFVNAEKYI 251


>gi|315639612|ref|ZP_07894752.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
 gi|315484573|gb|EFU75029.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
          Length = 260

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 16/220 (7%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALS 156
           ++FL P         + + +D+K    GGY QAER R  +  P+  T    + DIV    
Sbjct: 36  TEFLDPRQAYILETIVRQQSDLKFEFYGGYEQAERTRCLI-FPDYYTPTQEEFDIVL-FE 93

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F   SHG  LG+++ +G+ RE  GDII  G +  Q LV  E+ +Y+   + K+G
Sbjct: 94  INYPEKFTQLSHGKILGTLVNSGLKREYFGDIISDGSRW-QVLVAKEVQNYIQMQVTKIG 152

Query: 217 NVSVSCTRIPLLALEY---EPPRTKSFK--TIEASLRVDALASAGFKLSRSKLVNLISNG 271
           +V+V      LL  EY     P+    +  T  +S+R+D + +  F +SR +   LI  G
Sbjct: 153 SVNVR-----LLVKEYIDLVSPKDAWLEEATTVSSMRLDTVIANVFSISRQRSKQLIEAG 207

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
            V+VNW    +    L   DIVS+ G GR++I     T K
Sbjct: 208 KVKVNWRVAQRPDFMLELLDIVSIRGFGRLQIQRQGGTTK 247


>gi|346722871|ref|YP_001180686.2| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|345106842|gb|ABP67495.2| RNA-binding S4 domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 256

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 24/260 (9%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQ 131
           +K  I +VK+++E +        + +SDFL+P   K ++  + K  +     Q  GGY  
Sbjct: 8   NKYEILKVKNLIERSYGG-----IEYSDFLSPYAQKYAIDIILKGENPYLFYQIWGGYED 62

Query: 132 AERCRLSVGHPEALTSDP------DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           +ER  L++     L          DI+   S T        SH   LG+ +G G+ R+KI
Sbjct: 63  SERKVLALSFDSRLEETDFSHFPIDIILIKSDT------ILSHRQILGTFIGQGLKRDKI 116

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI+++  K   F V  E++ ++ T ++++G   +    +    ++       S K I  
Sbjct: 117 GDILVKENKALVF-VKEEVSLFITTHIDRIGRDRIKTEVVNKDDIDISQFIQNSGKRIVC 175

Query: 246 S---LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           S   +RVDA+ S GF +SR    +L+    V VNW  + K    ++ GD++SV   GR+K
Sbjct: 176 SVPSMRVDAIVSHGFGISREDASDLVRQFKVAVNWVYIDKPSYEVKEGDLISVRHHGRLK 235

Query: 303 IGEI-NSTRKGKFAVELIQY 321
           + ++  +T+KG+ ++EL+++
Sbjct: 236 VEKVLTTTKKGRISIELLRF 255


>gi|229168638|ref|ZP_04296360.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
 gi|228614794|gb|EEK71897.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
          Length = 241

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R  + +P+ L  +
Sbjct: 8   KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKRALI-YPDYLELN 65

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ REK GDI+LQ E  AQ  V  E+  
Sbjct: 66  EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 124

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
           Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    +SR K+  
Sbjct: 125 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 185 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 235


>gi|315304053|ref|ZP_07874473.1| S4 domain-containing protein [Listeria ivanovii FSL F6-596]
 gi|313627577|gb|EFR96290.1| S4 domain-containing protein [Listeria ivanovii FSL F6-596]
          Length = 258

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P         +     +K    GG   AER R ++ +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRYIIETIIGGYDQIKVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI L  +   Q LV  ++ DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDI-LNKDTEWQLLVESKMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    + P   +      +S+R+D + S+   +SR K   L+  G V+VNW
Sbjct: 153 VNVMLEETDLSEAVFTPTVWEEMGLTVSSMRLDVIISSAHHISRQKAKQLVVAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+KI EI   T+K K  VE+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKILEIGGRTKKDKIRVEI 254


>gi|347549424|ref|YP_004855752.1| hypothetical protein LIV_2007 [Listeria ivanovii subsp. ivanovii
           PAM 55]
 gi|346982495|emb|CBW86493.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
          Length = 258

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +     +K    GG   AER R ++ +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRYITETIIGGYDQIKVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           ++V      L    + P   +      +S+R+D + S    +SR K   L+  G V+VNW
Sbjct: 153 INVMLEETDLSEAVFTPTIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+KI EI   T+K K  VE+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKILEIGGRTKKDKIRVEI 254


>gi|408356933|ref|YP_006845464.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
 gi|407727704|dbj|BAM47702.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
          Length = 260

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 3/239 (1%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +L    +   +    +SDFL P         + +    K V  GG P AER +  + 
Sbjct: 15  IDQVLSWKDQVEKQYITKYSDFLDPREQYIFQNIIGQDEQFKLVFFGGIPNAERKQAILA 74

Query: 141 -HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QF 198
              E + S+   ++ L+      F    H D LG+ L  G+ R+K+GD+ +  ++G  Q 
Sbjct: 75  PFYEEIDSNSFPISVLTTKYPAKFVTIEHRDVLGAFLSLGLLRKKLGDLSIDPDQGIIQL 134

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V  +++D++I     + N +V    IPL           + +T  +SLR+D +    ++
Sbjct: 135 IVSADISDFIIAQFNSIKNANVQFQPIPLSKAIDSKDEWSNHETTVSSLRLDVMIKHIYR 194

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            SR++ + LI  G V+VN+ TV      + +GD++S  GKGR +  +I + T+K  + +
Sbjct: 195 FSRTQALELIKKGYVKVNFKTVEDPAFIVESGDMISCRGKGRSRFNDIITLTKKQNYRI 253


>gi|417006954|ref|ZP_11945226.1| cell division protein [Lactobacillus helveticus MTCC 5463]
 gi|328468653|gb|EGF39647.1| cell division protein [Lactobacillus helveticus MTCC 5463]
          Length = 266

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      DV     GGY  AE+ R+ +   E +   P   +
Sbjct: 34  KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYTNAEKKRVYLSE-EWVNLQPSDYL 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI  +  GDII       QF    EL D+    
Sbjct: 91  IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           + ++G   V    I    +      +     I AS+R+DA+ S+  K SR ++  LI N 
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
            V++NW  +  +   ++  DI+S+   GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257


>gi|22536662|ref|NP_687513.1| hypothetical protein SAG0483 [Streptococcus agalactiae 2603V/R]
 gi|22533501|gb|AAM99385.1|AE014213_24 ylmH protein [Streptococcus agalactiae 2603V/R]
          Length = 262

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           I ++ H   +A+   +    + ++FL P   K     LE+         G Y Q E  ++
Sbjct: 18  IHKIDH---LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKV 73

Query: 138 SVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
            +  PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E 
Sbjct: 74  IIA-PEYYQLDMADFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EG 131

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
            AQ LV  ++ ++L+ S+ K+G  SV    +PL  L       +    I +SLR+D + +
Sbjct: 132 CAQVLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILA 191

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGK 313
              K+SR++   LI    V+VN+ TV +    L  GD++SV G GR  +   +  T+  K
Sbjct: 192 TILKISRTQSTKLIEADKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQK 251

Query: 314 FAVEL 318
           + +E+
Sbjct: 252 YKLEV 256


>gi|227529017|ref|ZP_03959066.1| ribosomal protein S4e [Lactobacillus vaginalis ATCC 49540]
 gi|227351029|gb|EEJ41320.1| ribosomal protein S4e [Lactobacillus vaginalis ATCC 49540]
          Length = 261

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 9/203 (4%)

Query: 121 VKAVAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
           VK  + GG+  AE  RL    S   P+A       V  L +     F    H   +G++L
Sbjct: 58  VKLESFGGWQSAEMRRLLFFPSYYQPQAADF---AVTGLEVDYPQKFAELHHRQIMGTLL 114

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
           G G+ R   GDI+  G++  Q +V  ++A ++   ++ VG + V    + L  L      
Sbjct: 115 GEGLERASFGDIVTNGKRW-QVVVTNQMARFVRERIDHVGKIKVKWKPVQLEELIVPEDD 173

Query: 237 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
            +   T  +SLR+DA+ +AGF  SR++   L+ +G V++NW  + +   ++R  D++SV 
Sbjct: 174 WEQLSTTVSSLRIDAIIAAGFNYSRNRAKQLLEHGLVQINWEEMQRPDYSVREHDMLSVR 233

Query: 297 GKGRIKIGEINS-TRKGKFAVEL 318
             GR+++ ++ S TRK K  + L
Sbjct: 234 HAGRLRMDQVGSITRKNKQRITL 256


>gi|423452799|ref|ZP_17429652.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
 gi|401139358|gb|EJQ46920.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
          Length = 255

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 89  RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
           ++A+   +V  +DFL P   +   M + +  DV     G  P+AER R ++ +P+ L  +
Sbjct: 22  KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79

Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 206
            +   V  L I     F    H   LG+ +  G+ R+K GDI+LQ E  AQ  V  E+  
Sbjct: 80  EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTRDKCGDILLQ-EDRAQIAVAKEVVS 138

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
           Y+  +L+ +G + V+ + I +  +     +        +SLR+D L +    +SR K+  
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           LI  G V+VNW TV +       GD+ SV G GR K+  +   T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249


>gi|315917373|ref|ZP_07913613.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691248|gb|EFS28083.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 257

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALT-----SDPDIVAALSITGNFGFQPCSHGDFLGSI 175
           +KAV  GGY  A R R+    PE L      +  D++  L +T        +H D+LG+ 
Sbjct: 53  IKAVFWGGYEGAMR-RILFFLPEYLEEYSYETFEDVLGVLEVTKLDKNLSLNHRDYLGAF 111

Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
            G G+ RE +GDI+++ E GA  +V+ E+   L+     VG   V      L  L +   
Sbjct: 112 TGLGLKRETMGDILVR-ENGADLIVLKEMIPILLEEYCSVGKSFVQVQEKSLKKLIFVEE 170

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
             K  +   ASLR+D +    F LSR++    I  G V VN+    KN + +  GDI+ +
Sbjct: 171 NQKKERGTVASLRLDNVLCEIFNLSRTQAQEWIQKGSVYVNYVEKYKNESGIEAGDIIVL 230

Query: 296 SGKGRIKIGEINS-TRKGKFAVELIQY 321
            G G+ KI E  S T+K K  +  I+Y
Sbjct: 231 RGMGKAKIEETGSFTKKNKVPIYYIKY 257


>gi|227544869|ref|ZP_03974918.1| ribosomal protein S4e [Lactobacillus reuteri CF48-3A]
 gi|338204193|ref|YP_004650338.1| S4 domain-containing protein YlmH [Lactobacillus reuteri SD2112]
 gi|227185143|gb|EEI65214.1| ribosomal protein S4e [Lactobacillus reuteri CF48-3A]
 gi|336449433|gb|AEI58048.1| S4 domain-containing protein YlmH [Lactobacillus reuteri SD2112]
          Length = 261

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
           +A   S  R VL + FL P         + +  +VK    GG+  AE  R+ +  P    
Sbjct: 25  VATAESQYRPVL-TPFLNPRERFIIQTIVNRNNNVKITMYGGWQGAEMQRVLIYPPYYEP 83

Query: 147 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
           S  D  + AL I     F    H   +G+++G G+ R   GDI+  G    Q +V   +A
Sbjct: 84  SIEDFALQALEINYPVKFSELHHRQIMGTLIGEGMERNAFGDILTDGAHW-QVIVTKPMA 142

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           +YL  ++E VG + V    I   A+           T  +SLR+D + +AGF  SR++  
Sbjct: 143 EYLRKNVEHVGQIKVKWIPIATEAVVTPKEEWVPIVTTVSSLRLDVVIAAGFNYSRNRAK 202

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI +G VR+NW  + +    +   D++SV   GR++I   N  T+K K
Sbjct: 203 QLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHGGRLRIDMTNGKTKKDK 251


>gi|76787217|ref|YP_329217.1| S4 domain-containing protein [Streptococcus agalactiae A909]
 gi|77405577|ref|ZP_00782667.1| ylmH protein [Streptococcus agalactiae H36B]
 gi|406709016|ref|YP_006763742.1| S4 domain-containing protein [Streptococcus agalactiae
           GD201008-001]
 gi|76562274|gb|ABA44858.1| S4 domain protein [Streptococcus agalactiae A909]
 gi|77175799|gb|EAO78578.1| ylmH protein [Streptococcus agalactiae H36B]
 gi|406649901|gb|AFS45302.1| S4 domain-containing protein [Streptococcus agalactiae
           GD201008-001]
          Length = 262

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           I ++ H   +A+   +    + ++FL P   K     LE+         G Y Q E  ++
Sbjct: 18  IHKIDH---LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKV 73

Query: 138 SVGHPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
            +  PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E 
Sbjct: 74  IIA-PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EG 131

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
            AQ LV  ++ ++L+ S+ K+G  SV    +PL  L       +    I +SLR+D + +
Sbjct: 132 CAQVLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILA 191

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGK 313
              K+SR++   LI    V+VN+ TV +    L  GD++SV G GR  +   +  T+  K
Sbjct: 192 TILKISRTQSTKLIEADKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQK 251

Query: 314 FAVEL 318
           + +E+
Sbjct: 252 YKLEV 256


>gi|16801200|ref|NP_471468.1| hypothetical protein lin2134 [Listeria innocua Clip11262]
 gi|16414648|emb|CAC97364.1| lin2134 [Listeria innocua Clip11262]
          Length = 258

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 127 GGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GG P AER R  + +P+  T ++ D  VA   I     F   +H   LG+++  G+ R+ 
Sbjct: 62  GGVPHAERRRALI-YPDYYTPTEADFEVALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI 120

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDI+  G +  Q LV   + DYL   LEK+G V+V      L    Y P   +      
Sbjct: 121 FGDILNNGSE-WQLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTV 179

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           +S+R+D + S    +SR K   L++ G V+VNW TV          D++S  G GR+K+ 
Sbjct: 180 SSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVL 239

Query: 305 EINS-TRKGKFAVEL 318
                T+K K  +E+
Sbjct: 240 STGGRTKKDKIRIEI 254


>gi|423098927|ref|ZP_17086635.1| S4 domain protein [Listeria innocua ATCC 33091]
 gi|370794754|gb|EHN62517.1| S4 domain protein [Listeria innocua ATCC 33091]
          Length = 259

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 127 GGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GG P AER R  + +P+  T ++ D  VA   I     F   +H   LG+++  G+ R+ 
Sbjct: 63  GGVPHAERRRALI-YPDYYTPTEADFEVALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI 121

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDI+  G +  Q LV   + DYL   LEK+G V+V      L    Y P   +      
Sbjct: 122 FGDILNNGSE-WQLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTV 180

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           +S+R+D + S    +SR K   L++ G V+VNW TV          D++S  G GR+K+ 
Sbjct: 181 SSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVL 240

Query: 305 EINS-TRKGKFAVEL 318
                T+K K  +E+
Sbjct: 241 STGGRTKKDKIRIEI 255


>gi|407718567|ref|YP_006795972.1| S4 domain-containing protein [Leuconostoc carnosum JB16]
 gi|407242323|gb|AFT81973.1| S4 domain-containing protein [Leuconostoc carnosum JB16]
          Length = 264

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E ++ + E  R++      + + FL P         + ++ D+     GG   AE  R  
Sbjct: 18  EFIQQVGEWIRQSEDEYRGILTKFLNPREQYILQTLVNRVKDLTVTYNGGTIGAENQRAI 77

Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +  P+      SD ++ A L +     F    H   LGS++  GI R+ IGDI+    + 
Sbjct: 78  IA-PDFYQFNLSDFEL-ALLEVKYPVKFVELHHSTLLGSLMNAGITRDVIGDILFDDSQQ 135

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q +V  ++  YL  ++EKVG+V ++ +      +  +    +    + +SLRVD + +A
Sbjct: 136 WQIIVDAKMVPYLQQTIEKVGHVKITLSVADFSHVIQKHDDWEEIFLLSSSLRVDTVIAA 195

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            F +SRS   +L+    VR+NWT + K    +  GDIVSV   GR+++
Sbjct: 196 AFAISRSLAKSLVEQRRVRINWTVIDKPDFMISVGDIVSVRKYGRLQL 243


>gi|194468386|ref|ZP_03074372.1| RNA-binding S4 domain protein [Lactobacillus reuteri 100-23]
 gi|194453239|gb|EDX42137.1| RNA-binding S4 domain protein [Lactobacillus reuteri 100-23]
          Length = 261

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
           +VK    GG+  AE  R+ +  P    S  D  + AL I     F    H   +G+++G 
Sbjct: 57  NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           G+ R   GDI+  G    Q +V   +A+YL  ++E VG + V    I   A+        
Sbjct: 117 GMERNAFGDILTDGAHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWV 175

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T  +SLR+D + +AGF  SR++   LI +G VR+NW  + +    +   D++SV   
Sbjct: 176 PIVTTVSSLRLDVVVAAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHG 235

Query: 299 GRIKIGEIN-STRKGK 313
           GR++I   N  T+K K
Sbjct: 236 GRLRIDMTNGKTKKDK 251


>gi|254854035|ref|ZP_05243383.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|300765463|ref|ZP_07075444.1| hypothetical protein LMHG_12332 [Listeria monocytogenes FSL N1-017]
 gi|404281642|ref|YP_006682540.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC2755]
 gi|404287453|ref|YP_006694039.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           serotype 7 str. SLCC2482]
 gi|258607427|gb|EEW20035.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|300513774|gb|EFK40840.1| hypothetical protein LMHG_12332 [Listeria monocytogenes FSL N1-017]
 gi|404228277|emb|CBY49682.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2755]
 gi|404246382|emb|CBY04607.1| RNA-binding S4 domain protein [Listeria monocytogenes serotype 7
           str. SLCC2482]
          Length = 258

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG P AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVPHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|365925132|ref|ZP_09447895.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
 gi|420266443|ref|ZP_14768909.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
 gi|394425357|gb|EJE98341.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
          Length = 261

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
           M + A+  R +L ++FL P  +  +   L   +D+K    G    AER R ++ +PE   
Sbjct: 25  MTQAATEYRPIL-TEFLNPREVYIAQTLLNTESDLKMKTDGLLQGAERQR-ALFYPEYYE 82

Query: 147 -SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 204
            S+ D  ++ + I     F    H   LG++   G+ R  IGDI+  GE+  QF+    +
Sbjct: 83  PSEADFELSLIWIKYPTKFATLKHSQILGALTHLGLRRNLIGDIVTDGERW-QFITAANM 141

Query: 205 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
            ++L   +E VG V V    +    +       +  +   +SLR+D L +  + LSR  +
Sbjct: 142 VNFLKIQVETVGKVKVHLEEVDKSEIVSPVDEWQGLQVTVSSLRLDTLIAGVYNLSRKHV 201

Query: 265 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            +L+S G V +NW  + K    +   DIVSV G GR ++  +   ++KGK  VEL
Sbjct: 202 KDLLSAGKVVLNWMDIEKPDVEVAEHDIVSVRGYGRFRLKALQGVSKKGKIRVEL 256


>gi|148543830|ref|YP_001271200.1| RNA-binding S4 domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|184153231|ref|YP_001841572.1| hypothetical protein LAR_0576 [Lactobacillus reuteri JCM 1112]
 gi|227364734|ref|ZP_03848783.1| ribosomal protein S4e [Lactobacillus reuteri MM2-3]
 gi|325682639|ref|ZP_08162156.1| S4 domain protein [Lactobacillus reuteri MM4-1A]
 gi|148530864|gb|ABQ82863.1| RNA-binding S4 domain protein [Lactobacillus reuteri DSM 20016]
 gi|183224575|dbj|BAG25092.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070193|gb|EEI08567.1| ribosomal protein S4e [Lactobacillus reuteri MM2-3]
 gi|324978478|gb|EGC15428.1| S4 domain protein [Lactobacillus reuteri MM4-1A]
          Length = 261

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
           +VK    GG+  AE  R+ +  P    S  D  + AL I     F    H   +G+++G 
Sbjct: 57  NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           G+ R   GDI+  G    Q +V   +A+YL  ++E VG + V    I   A+        
Sbjct: 117 GMERNAFGDILTDGSHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWV 175

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T  +SLR+D + +AGF  SR++   LI +G VR+NW  + +    +   D++SV   
Sbjct: 176 PIVTTVSSLRLDVVIAAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHG 235

Query: 299 GRIKIGEIN-STRKGK 313
           GR++I   N  T+K K
Sbjct: 236 GRLRIDMTNGKTKKDK 251


>gi|422419651|ref|ZP_16496606.1| S4 domain-containing protein [Listeria seeligeri FSL N1-067]
 gi|313632501|gb|EFR99511.1| S4 domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 258

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  IL +  R  +      +DFL P     +   +     +K    GG   AER R  + 
Sbjct: 16  IDKILGITMRVENEYTPQLTDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI- 74

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+  T ++ D  +A   I     F   +H   LG+++  G+ R+  GDI+  G +  Q 
Sbjct: 75  YPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSE-WQL 133

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           LV   + DYL   LEK+G V+V      L    + P   +      +S+R+D + S    
Sbjct: 134 LVESTMKDYLTLQLEKIGKVNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHH 193

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           +SR K   L+  G V+VNW TV          D++SV G GR+KI +    T+K K  +E
Sbjct: 194 ISRQKAKQLVVAGLVKVNWKTVENPDFECEQEDVLSVRGYGRVKIIQTGGRTKKDKIRIE 253

Query: 318 L 318
           +
Sbjct: 254 I 254


>gi|291550387|emb|CBL26649.1| Uncharacterized conserved protein, contains S4-like domain
           [Ruminococcus torques L2-14]
          Length = 266

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 120/256 (46%), Gaps = 25/256 (9%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVG 140
           +E++R A  R  V +SDFL           L  L   K  ++    GGY  AER +++  
Sbjct: 18  IELSRIAFEREIVTYSDFLNL----NDQNILHTLPKNKLYSRYVLFGGYDMAER-QMAAF 72

Query: 141 HPEALT-----SD--------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
            PEAL+     SD        P     +        +  +H DFLGSIL  GI R K GD
Sbjct: 73  IPEALSLRYGVSDITPKEIDYPFCAVKIEPKNKRFSEDLTHRDFLGSILNLGIDRSKTGD 132

Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
           I++  E  A   +  +L   +   L +V +  +  + I L  + Y P   +  K   +S+
Sbjct: 133 ILVT-EDSALLFINKDLVSVVTEDLTRVRHTVIDSSVINLDMINYTPD-LQQIKGTVSSV 190

Query: 248 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN 307
           R+D+L    F  SRSKL  LI    V VN   +T NG  ++ GD++SV G G+ +  E  
Sbjct: 191 RLDSLLPLAFSSSRSKLSGLIEGAKVFVNGKLITSNGYQVKEGDLISVRGLGKFRFEEAG 250

Query: 308 S-TRKGKFAVELIQYL 322
             T+K + +V + +Y+
Sbjct: 251 KITKKNRISVTIQKYV 266


>gi|422422742|ref|ZP_16499695.1| S4 domain-containing protein [Listeria seeligeri FSL S4-171]
 gi|313637033|gb|EFS02602.1| S4 domain-containing protein [Listeria seeligeri FSL S4-171]
          Length = 259

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  IL +  R  +      +DFL P     +   +     +K    GG   AER R  + 
Sbjct: 17  IDKILGITMRVENEYTPQLTDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI- 75

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+  T ++ D  +A   I     F   +H   LG+++  G+ R+  GDI+  G +  Q 
Sbjct: 76  YPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSE-WQL 134

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           LV   + DYL   LEK+G V+V      L    + P   +      +S+R+D + S    
Sbjct: 135 LVESTMKDYLTLQLEKIGKVNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHH 194

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           +SR K   L+  G V+VNW TV          D++SV G GR+KI +    T+K K  +E
Sbjct: 195 ISRQKAKQLVVAGLVKVNWKTVENPDFECEQEDVLSVRGYGRVKIIQTGGRTKKDKIRIE 254

Query: 318 L 318
           +
Sbjct: 255 I 255


>gi|402297354|ref|ZP_10817126.1| putative RNA-binding S4 domain-containing protein [Bacillus
           alcalophilus ATCC 27647]
 gi|401727404|gb|EJT00594.1| putative RNA-binding S4 domain-containing protein [Bacillus
           alcalophilus ATCC 27647]
          Length = 239

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 13/225 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL- 155
           +DFL P    +LK +++ +++  DV+    GG    ER R  +  P  + +D +  A   
Sbjct: 16  TDFLDPREQEILK-TVVGIDE--DVQLSFFGGRGDIERQRAHLA-PSYIVADEETFACFL 71

Query: 156 -SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            SI     F   +H D LG+++  G+ REK GDII+ G    Q ++  E+A Y+  +L  
Sbjct: 72  YSIEYPSKFVTLTHRDILGALMSIGLKREKFGDIIING-TDIQVILAKEVASYVEVNLTS 130

Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +G  +V   R+P  A LE      +   TI +SLR+DA+ +  +++SRSK+   ++ G V
Sbjct: 131 IGKATVQLKRLPFSAQLELVDSWNERSGTI-SSLRLDAVLAEIYRVSRSKIEPYLAKGYV 189

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 317
           +VNW  V      ++  D  SV G GR ++  ++  T+K K+ ++
Sbjct: 190 KVNWKVVENGSFQVKATDHFSVRGFGRSQLVSLDGKTKKDKWKIQ 234


>gi|339497698|ref|ZP_08658674.1| cell division protein [Leuconostoc pseudomesenteroides KCTC 3652]
          Length = 265

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ +L+  ++A     ++ + FL P         + + +++++   GG   AE  R  + 
Sbjct: 20  IQQVLDWMKQADDDYRLVLTRFLNPREQYILQTLINRQSELQSYLYGGVAGAESQRAIIA 79

Query: 141 HPEALTSDPDI------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
            PE      DI      +A L++     F    H   LG+++  GI+R+ +GDI+   E+
Sbjct: 80  -PEVF----DIKLEDFGIALLTVQYPQKFATLHHATILGTLMHLGISRDVVGDILFDAEE 134

Query: 195 GA-QFLVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDAL 252
            + Q +V  ++  Y+  ++ K+G V+ +   +PL  AL       + F T+ +SLR+D +
Sbjct: 135 TSWQIIVDKKMVAYIQQTVTKIGRVAANLKELPLNEALPVLTNWQEQF-TLMSSLRLDVV 193

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
            S+ F+LSRS    LI +G V VNW    K    +  GD++SV   GR +I  ++   K
Sbjct: 194 ISSIFQLSRSDTKTLIESGQVHVNWMVAQKTNMDVAVGDLISVRKHGRAQIKSLDGRSK 252


>gi|423332889|ref|ZP_17310671.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
 gi|337728007|emb|CCC03096.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
          Length = 261

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
           +VK    GG+  AE  R+ +  P    S  D  + AL I     F    H   +G+++G 
Sbjct: 57  NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           G+ R   GDI+  G    Q +V   +A+YL  ++E VG + V    I   A+        
Sbjct: 117 GMERNAFGDILTDGAHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWI 175

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T  +SLR+DA+ + GF  SR++   LI +G VR+NW  + +    +   D++SV   
Sbjct: 176 PIVTTVSSLRLDAVIAVGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHG 235

Query: 299 GRIKIGEIN-STRKGK 313
           GR++I   N  T+K K
Sbjct: 236 GRLRIDMTNGKTKKDK 251


>gi|336424183|ref|ZP_08604226.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
           3_1_57FAA_CT1]
 gi|336007851|gb|EGN37871.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
           3_1_57FAA_CT1]
          Length = 256

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           DK+ ++  K  LE+A ++ ++     + FL+    +    A++K         GG    E
Sbjct: 6   DKDLLQLKKRFLELAEKSYAQNIYTFTGFLSMAEQEALFEAMQKNKSYTFSLSGGGEGCE 65

Query: 134 RCRLSVGHPEAL-TSDPDIVAALSIT-------GNFGFQPCSHGDFLGSILGTGIAREKI 185
           R     G PE L   +P  V  L I+        NF     +H DFLG+++  GI R  +
Sbjct: 66  RQMARFGSPEELGYEEPFPVEVLKISPLLEKFADNF-----THRDFLGAVMNLGIDRSTV 120

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GD  L+G K A       +A Y+  +L KV + +V C  I    +E      +    I +
Sbjct: 121 GDFFLEG-KSAWLYCTQRIAPYICENLNKVRHTNVRC-EIVEQGMELPVREPEKISLIVS 178

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIG 304
           S R DA+ +  ++LSR++ + L     V VN      N   L++GD VS  G GR +  G
Sbjct: 179 SERADAVLAKLWQLSRNQSLELFRTKKVYVNGRLCENNSCQLKSGDRVSTRGYGRFLYYG 238

Query: 305 EINSTRKGKFAV 316
            +  TRKG+  V
Sbjct: 239 ALGETRKGRLNV 250


>gi|291542659|emb|CBL15769.1| Uncharacterized conserved protein, contains S4-like domain
           [Ruminococcus bromii L2-63]
          Length = 255

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG-NFGFQPC---SHGDFLGSILGTGIAR 182
           GGY  +ER  L +   E  TS         I G  F F+ C   +H DFLGS++  GI R
Sbjct: 63  GGYDDSERKMLGLFFDEPSTS------MFPICGIEFSFRKCDRLTHRDFLGSLMSLGIER 116

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFK 241
           E +GDI+++  +   F V  EL+DY+ + + KVG V V      L  L +      K+F 
Sbjct: 117 ETVGDILVEDGRAVVF-VKAELSDYVKSQISKVGRVGVKVDDADLSKLPQGRGVEEKTF- 174

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
            I +SLR+D + +A  KLSR K   +I +  V VN+         L+  D+ ++ GKG+ 
Sbjct: 175 -IVSSLRLDNIVAAVCKLSREKTKTVIMSDSVCVNFEETKNVSFNLKENDVFTIRGKGKF 233

Query: 302 KI-GEINSTRKGKFAVELIQY 321
            + G + +T KG+  + +I Y
Sbjct: 234 VLKGILGTTGKGRMRISVIHY 254


>gi|410594162|ref|YP_006950889.1| RNA-binding protein S4 [Streptococcus agalactiae SA20-06]
 gi|410517801|gb|AFV71945.1| RNA-binding S4 [Streptococcus agalactiae SA20-06]
          Length = 262

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 7/242 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  I  +A+   +    + ++FL P   K     LE+         G Y Q E  ++ + 
Sbjct: 18  INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
            PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ
Sbjct: 77  -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            LV  ++ ++L+ S+ K+G  SV    +PL  L       +    I +SLR+D + +   
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATIL 194

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           K+SR++   LI    V+VN+  V +    L  GD++SV G GR  +   +  T+  K+ +
Sbjct: 195 KISRTQSTKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKL 254

Query: 317 EL 318
           EL
Sbjct: 255 EL 256


>gi|15615110|ref|NP_243413.1| hypothetical protein BH2547 [Bacillus halodurans C-125]
 gi|10175167|dbj|BAB06266.1| BH2547 [Bacillus halodurans C-125]
          Length = 258

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 11/240 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  ++E     S +     +DFL P   +     + +  DV     GG   AER R  + 
Sbjct: 15  IDQVMEWKADVSMQYTWKRTDFLDPREQEIVDALVGRNDDVSVSFWGGSEHAERKRACLI 74

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
            P    ++ D  +    ++    F    H   LG+ +  G+ REK GDI++  E+  Q +
Sbjct: 75  PPYLELAEEDYGLTLFELSYPKKFLTIDHRQVLGACMSLGVKREKFGDILVADER-IQLV 133

Query: 200 VVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALASA 255
           V  E+A+++   L  VG   V    +     L+  E    RT +     +SLR+DA+   
Sbjct: 134 VATEIAEFVRLHLTSVGKAQVEMVELGFEQMLVTTESWHERTATV----SSLRLDAVIGE 189

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 314
              LSR+K   L+  G V+VNW  V     TL+ GD +SV G GR K+ E+   T+K KF
Sbjct: 190 MLSLSRAKAAELVEKGRVKVNWKLVESGALTLQAGDHISVRGFGRHKLLEVEGKTKKDKF 249


>gi|421531599|ref|ZP_15977979.1| hypothetical protein M3M_00842 [Streptococcus agalactiae
           STIR-CD-17]
 gi|403643127|gb|EJZ03915.1| hypothetical protein M3M_00842 [Streptococcus agalactiae
           STIR-CD-17]
          Length = 262

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 7/242 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  I  +A+   +    + ++FL P   K     LE+         G Y Q E  ++ + 
Sbjct: 18  INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
            PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ
Sbjct: 77  -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-ECCAQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            LV  ++ ++L+ S+ K+G  SV    +PL  L       +    I +SLR+D + +   
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATIL 194

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           K+SR++   LI    V+VN+  V +    L  GD++SV G GR  +   +  T+  K+ +
Sbjct: 195 KISRTQSTKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKL 254

Query: 317 EL 318
           EL
Sbjct: 255 EL 256


>gi|295100786|emb|CBK98331.1| Uncharacterized conserved protein, contains S4-like domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 273

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 12/250 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
           ++H+ ++AR A  R    +S FL+    + +  AL +    +     +GG+P AER  L 
Sbjct: 27  MRHVEDLARAAFGRGIARYSAFLSDREQQLAQAALNRAGAPEESCRFEGGWPDAERRVLC 86

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQ 197
           +   +   + P     L      G Q   H D+LGS++G  + RE +GDI+L  E+ G  
Sbjct: 87  LEPEDCCPASPVCCVRLRCRALAGAQLPVHKDYLGSLMGLELRREALGDIVLPPEEPGVA 146

Query: 198 FLVVPELADYLITS-LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE----ASLRVDAL 252
           +L   E A  LI   L  VG   V+  +   LAL+  P   ++ + ++    +SLR+DA+
Sbjct: 147 YLFALEPAAALICQELRSVGRTEVTAQQ---LALDEVPEFAQAERRLQTATVSSLRLDAV 203

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
            +A  + SR     L++ G V +N   V+     +   D+ +V GKGR ++  +   ++K
Sbjct: 204 LAAMLRCSRGMAAELVAAGRVEINHLPVSSAHAPVYESDVFTVRGKGRFRLTALPGKSKK 263

Query: 312 GKFAVELIQY 321
            +  +E  QY
Sbjct: 264 DRQIIEFFQY 273


>gi|347542604|ref|YP_004857241.1| S4 domain-containing protein [Candidatus Arthromitus sp.
           SFB-rat-Yit]
 gi|346985640|dbj|BAK81315.1| S4 domain protein [Candidatus Arthromitus sp. SFB-rat-Yit]
          Length = 258

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 25/259 (9%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRA-SSRREVLHSDFLTPPVLK--ESMMALEKLADVK 122
           +D +K  G  N+IE+   +  +   A  S + ++ ++F T  V    +S ++ ++L    
Sbjct: 5   NDFIKSCG--NSIEDANKLFSLYVSALKSGKTMITNEFYTVNVCNVLKSFLSTKEL---N 59

Query: 123 AVAQGGYPQAERCRL--SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
            +  G    AERC +  S+G  +    D D+   L I+ N  F   SH DFLGSI+  G 
Sbjct: 60  VLCYGFVDDAERCLIAFSIGEIDLSIFD-DVAKVLKISYNDKFNKLSHRDFLGSIMSLGF 118

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSC-TRIPLLALEYEPP 235
           +REK+GD++++        VV +  DY+I +L KV     NV+V    R+P         
Sbjct: 119 SREKMGDLVIENN-SVYVPVVIDFVDYIIQNLIKVKHSPVNVAVELFNRLP-------QK 170

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           R +    + +SLR+D + S+   +SR K   L+  G +++N    +     +   DI+ V
Sbjct: 171 RFEILYKVVSSLRIDNIISSLTNVSREKSKLLVKEGKIKINGIIESNPDKKICENDIIVV 230

Query: 296 SGKGRIKIGEI-NSTRKGK 313
           +G G+ K  EI  ST K K
Sbjct: 231 TGFGKFKFKEILGSTSKNK 249


>gi|392957451|ref|ZP_10322974.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
 gi|391876414|gb|EIT85011.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
          Length = 257

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 5/239 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +L+       R  V  +DFL P     +   + K AD      GG   +ER R  + 
Sbjct: 15  IDQVLQWKNEVEERFSVKLTDFLDPREQDIATSIIGKDADSSLSFWGGSSHSERRRALIH 74

Query: 141 HP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           H   E   SD ++ +   I     F    H D LG+++  G+ R K GDI+   +   Q 
Sbjct: 75  HAYLEPKPSDFEL-SVFEIQYPTKFSSLEHRDVLGALMNIGVKRSKFGDIV-HSQDRLQV 132

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
            V  E+ D++  ++ K+G  SV+   +   A  +   R        +SLR+D + +  + 
Sbjct: 133 TVANEIKDFIAMNVTKIGRTSVTLQLVEEGAYLHPEERYVEKAGTVSSLRLDVMIAEVYG 192

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
           LSRSK    I++  V+VNW  V      L+ GD +S+ G GR K+  + + T+K K+ +
Sbjct: 193 LSRSKAAPFITSSKVKVNWRKVEDPSFPLQQGDYISLRGFGRSKLLHVGDKTKKDKWRI 251


>gi|374997216|ref|YP_004972715.1| hypothetical protein Desor_4799 [Desulfosporosinus orientis DSM
           765]
 gi|357215582|gb|AET70200.1| hypothetical protein, contains S4-like domain [Desulfosporosinus
           orientis DSM 765]
          Length = 265

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 20/263 (7%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDF--LTPPV---LKESMMALEKLADVK 122
           +LK   +K+A  E  H+L+          VLH     LTP +   ++E + ++ +   V+
Sbjct: 9   VLKFWDEKDARLEAAHLLDQLNL------VLHKGIKQLTPFLSLAMREWLESIIRKEQVE 62

Query: 123 AVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
             A+GG+P+AER R+ +G   E L +    +A + +          H   LGS++G GI 
Sbjct: 63  YRAEGGFPEAERVRIFMGPRGEWLDTADTGMALIWVMPTDSRIQLQHRQILGSLMGLGIR 122

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVG--NVSVSCTR-IPLLALEYEPPRTK 238
           R+  GDI   G+KG       E+ D+++ +    G   + VS  R  P L     P   +
Sbjct: 123 RDVFGDI-QPGQKGFYIAAASEIVDFVLNNWTNAGRDTIQVSLVRGKPSLL----PDLGE 177

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
             +   +S R+DA+ +  F +SR+    LIS G VR     V+K  T L+  DI+S  G 
Sbjct: 178 ERRITVSSSRIDAVIANAFGVSRTVAQELISQGKVRRGGLVVSKFTTELQADDIISCRGH 237

Query: 299 GRIKIGEINSTRKGKFAVELIQY 321
           GRIK+ +   TRK + A +++ +
Sbjct: 238 GRIKLLKSAQTRKERIAWQILLF 260


>gi|289435369|ref|YP_003465241.1| S4 domain-containing protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171613|emb|CBH28159.1| S4 domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 258

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  IL +  R  +      +DFL P     +   +     +K    GG   AER R  + 
Sbjct: 16  IDKILGITMRVENEYTPQLTDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI- 74

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+  T ++ D  +A   I     F   +H   LG+++  G+ R+  GDI+  G +  Q 
Sbjct: 75  YPDYYTPTEVDFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTE-WQL 133

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           LV   + DYL   LEK+G V+V      L    + P   +      +S+R+D + S    
Sbjct: 134 LVESTMRDYLTLQLEKIGKVNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHH 193

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           +SR K   L+  G V+VNW TV          D++SV G GR+KI +    T+K K  +E
Sbjct: 194 ISRQKAKQLVVAGLVKVNWKTVENPDFECEQEDVLSVRGYGRVKIIQTGGRTKKDKIRIE 253

Query: 318 L 318
           +
Sbjct: 254 I 254


>gi|153814895|ref|ZP_01967563.1| hypothetical protein RUMTOR_01110 [Ruminococcus torques ATCC 27756]
 gi|317500408|ref|ZP_07958632.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089585|ref|ZP_08338484.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|336438901|ref|ZP_08618522.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
           1_1_57FAA]
 gi|145847926|gb|EDK24844.1| S4 domain protein [Ruminococcus torques ATCC 27756]
 gi|316898163|gb|EFV20210.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404953|gb|EGG84491.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|336017391|gb|EGN47153.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
           1_1_57FAA]
          Length = 266

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 27/260 (10%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRL 137
           K  +E++R A  R  + +SDFL    L E  + L  L       Q    GGY  AER ++
Sbjct: 15  KRFIELSRNAYQRDFITYSDFLN---LNEQNI-LHTLPKENLFTQILTFGGYGMAER-QM 69

Query: 138 SVGHPEAL-------TSDPDIV-------AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           +   P+AL         DP ++         L +   F  +  +H D+LGSIL  GI R 
Sbjct: 70  AAFIPDALYLRCGKKELDPALIRYPFKALQVLPLNRKFS-EDLTHRDYLGSILNLGIDRS 128

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
           K GDI+++      F    ++  +L + L ++ + SV    +P   ++Y P   +   T+
Sbjct: 129 KTGDILIENNTAILF-AHDDIVSFLCSELTRIRHTSVKTEELPSFDIQYTPKYEELTGTV 187

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            AS+R+D+L S  F  SR+KL  LI  G V VN   +T NG     GD++SV   G+ + 
Sbjct: 188 -ASVRLDSLLSLAFSSSRTKLSGLIEGGRVFVNGKLITSNGYQPNEGDLISVRKMGKFRF 246

Query: 304 GEI-NSTRKGKFAVELIQYL 322
             I N TRK +  V + +Y+
Sbjct: 247 AGIGNKTRKHRIYVRIQKYI 266


>gi|345860008|ref|ZP_08812337.1| S4 domain protein [Desulfosporosinus sp. OT]
 gi|344326869|gb|EGW38318.1| S4 domain protein [Desulfosporosinus sp. OT]
          Length = 265

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           +GG+P+AER R+ VG P   T DP    ++ + +  +       H   LGS++G G  R+
Sbjct: 66  EGGFPEAERVRIIVG-PWGETLDPTDADISLIWVRPSDSRAQLEHRQILGSLMGLGFKRD 124

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSCTRIPLLALEYEPPRTKS 239
            +GDI   G +G       E+A +LI    + G     VS+ C +  +    Y     +S
Sbjct: 125 VLGDI-QAGRRGFYIATTAEIASFLIDHWIQAGREKIEVSLYCEKPDV----YPDLGEES 179

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
             T+ +S R+DAL +  F ++RS  +  I+ G VR +   V+K    +R GDI+S  G+G
Sbjct: 180 RITVNSS-RIDALIANAFGVARSNALQWITQGKVRRDGLVVSKAEAEVRPGDIISCRGQG 238

Query: 300 RIKIGEINSTRKGKFAVELIQY 321
           RIK  E + TRK + A +++ +
Sbjct: 239 RIKFLECSQTRKERTAWKIVLF 260


>gi|116618583|ref|YP_818954.1| cell division protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097430|gb|ABJ62581.1| Cell division protein, S4-like domain [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 265

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 5/238 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           VK + +  +++ +    + + FL P       + +   AD+     GG   AE  R  + 
Sbjct: 20  VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
             E    D +  ++ L I     F    H   LGS++ +GI+R  IGDI+  Q     Q 
Sbjct: 80  PKEYPQDDLEFEISLLEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQI 139

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGF 257
           ++  ++  Y+   + K+G+V VS     L   L +     ++F  + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQVSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
            LSRS    LI    VRVNW+ + K    L  GD++SV   GR++I  ++  ++KGK 
Sbjct: 199 DLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRKHGRVQIKLLDGISKKGKI 256


>gi|339496651|ref|ZP_08657627.1| cell division protein [Leuconostoc pseudomesenteroides KCTC 3652]
          Length = 277

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 5/237 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           VK + +  +++ +    + + FL P       + +   AD+     GG   AE  R  + 
Sbjct: 20  VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
             E    D +  ++ L I     F    H   LGS++ +GI+R  IGDI+  Q     Q 
Sbjct: 80  PKEYPQDDLEFEISLLEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQI 139

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGF 257
           ++  ++  Y+   + K+G+V VS     L   L +     ++F  + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQVSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 313
            LSRS    LI    VRVNW+ + K    L  GD++SV   GR++I  ++  ++KGK
Sbjct: 199 DLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRKHGRVQIKLLDGISKKGK 255


>gi|163790530|ref|ZP_02184959.1| S4 domain protein [Carnobacterium sp. AT7]
 gi|159874133|gb|EDP68208.1| S4 domain protein [Carnobacterium sp. AT7]
          Length = 260

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 17/228 (7%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           ++FL P  L      + K +D+   + GGY  AER R  +          D  V    I 
Sbjct: 36  TNFLDPRQLHIVKTIVGKNSDITIHSFGGYEAAERVRAFICPAYFTPKQEDFEVTICEIR 95

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F   SHG  LG++L TG+ R+  GDII  G +  Q  V      Y+   +  +G V
Sbjct: 96  YPTKFASLSHGKVLGTLLSTGLKRDYFGDIISDGSRW-QVFVENSTKSYIEQQVVSIGKV 154

Query: 219 SVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           +V           IP+     E           +S+R+D L S+ FK+SR +   +I +G
Sbjct: 155 AVRMEERAYTDILIPIDNWSIENQTV-------SSMRLDTLVSSVFKISRQRAKQMIESG 207

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
            V++NW  +T+    +   DIVSV G GR+++ EI   T+K K+ ++L
Sbjct: 208 KVKLNWVELTRPDFEIGLLDIVSVRGYGRLQVQEIEGKTKKDKWRLQL 255


>gi|304440209|ref|ZP_07400099.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371258|gb|EFM24874.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 249

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 23/244 (9%)

Query: 69  LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP-------PVLKESMMALEKLADV 121
           L  + D +  E++K  +E    A      + +DFL P       P++  ++   E     
Sbjct: 4   LDFIQDNSLKEKLKQTIEKIEIADKSNRSIDTDFLDPYERSIIRPIIGHNLEYYE----- 58

Query: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
                GGY +AER  + +  P    ++      LSI         SH + LGS+LG G+ 
Sbjct: 59  ----DGGYDEAERKIIQIYPPYIERTEK-----LSIIKIISKNKISHREILGSVLGLGLV 109

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
           REKIGDI+  G+     +V  ELA+Y+ ++LEKVGN  ++ +    +    +   ++ F 
Sbjct: 110 REKIGDIVSNGDFEHYLIVKNELANYIHSNLEKVGNYKINISFSDKVVCSEKKFVSREF- 168

Query: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301
            +  S R+D   S  F + R    + I NG  +VN+  +    + +  GD+VS+ G GR+
Sbjct: 169 -VVKSKRLDLFISKAFAIRRDLAKSYIENGFCKVNFAPIKSASSLINEGDLVSLRGYGRV 227

Query: 302 KIGE 305
              E
Sbjct: 228 FYAE 231


>gi|77411416|ref|ZP_00787762.1| ylmH protein [Streptococcus agalactiae CJB111]
 gi|77162502|gb|EAO73467.1| ylmH protein [Streptococcus agalactiae CJB111]
          Length = 262

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 10/245 (4%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           I ++ H   +A+   +    + ++FL P   K     LE+         G Y Q E  ++
Sbjct: 18  IHKIDH---LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKV 73

Query: 138 SVGHPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEK 194
            +  PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E 
Sbjct: 74  IIA-PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EG 131

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
            AQ LV  ++ ++LI S+ K+G  SV    +PL  L       +    I +SLR+D + +
Sbjct: 132 YAQVLVDSQMTNHLIHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILA 191

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGK 313
              K+SR +   LI    V+VN+  V +    L  GD++SV G GR  +   +  T+  K
Sbjct: 192 TILKISRKQSTKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLSHNLGLTKNQK 251

Query: 314 FAVEL 318
           + +E+
Sbjct: 252 YKLEV 256


>gi|171778695|ref|ZP_02919791.1| hypothetical protein STRINF_00643 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|379704852|ref|YP_005203311.1| hypothetical protein Sinf_0487 [Streptococcus infantarius subsp.
           infantarius CJ18]
 gi|171282652|gb|EDT48076.1| S4 domain protein [Streptococcus infantarius subsp. infantarius
           ATCC BAA-102]
 gi|374681551|gb|AEZ61840.1| hypothetical protein, contains S4-like domain protein
           [Streptococcus infantarius subsp. infantarius CJ18]
          Length = 261

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 9/236 (3%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPE 143
           ++A+R         +DFL P  +  +   L        ++   YP AE  R+ V   + E
Sbjct: 22  DIAQRVEETYAYSLTDFLNPRQVDIAKSILGNRGLRYFISSDYYP-AEYARILVAPDYYE 80

Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL-GTGIAREKIGDIILQGEKG-AQFLVV 201
               D ++ A L +  N  F   +H   +G++L   G+ R  IGDI++  E+G AQ LV 
Sbjct: 81  LNLEDFEL-ALLEVNYNSKFNQLTHAQIMGTLLHKLGVKRTIIGDILV--EQGYAQLLVT 137

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
             + DY   ++ K+   SVS   I L  L      +     + +S+R+D + +   KLSR
Sbjct: 138 KSMVDYFRVNVTKIAKASVSLKEISLDQLIKGEKESHQLDIMVSSMRLDKVLATVLKLSR 197

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAV 316
           S+ + LIS   V+VN+ T+ +    L+ GD++SV G GR  I  E   T+ GK+ +
Sbjct: 198 SQAIQLISAEKVKVNYQTLDRPSEMLQFGDLISVRGFGRFSILSENGLTKNGKYKL 253


>gi|25010599|ref|NP_734994.1| hypothetical protein gbs0530 [Streptococcus agalactiae NEM316]
 gi|77408402|ref|ZP_00785142.1| ylmH protein [Streptococcus agalactiae COH1]
 gi|77414693|ref|ZP_00790826.1| ylmH protein [Streptococcus agalactiae 515]
 gi|421147589|ref|ZP_15607274.1| hypothetical protein GB112_06934 [Streptococcus agalactiae GB00112]
 gi|23094952|emb|CAD46174.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159253|gb|EAO70431.1| ylmH protein [Streptococcus agalactiae 515]
 gi|77173005|gb|EAO76134.1| ylmH protein [Streptococcus agalactiae COH1]
 gi|401685709|gb|EJS81704.1| hypothetical protein GB112_06934 [Streptococcus agalactiae GB00112]
          Length = 262

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 7/242 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  I  +A+   +    + ++FL P   K     LE+         G Y Q E  ++ + 
Sbjct: 18  INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
            PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ
Sbjct: 77  -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            LV  ++ ++L+ S+ K+G  SV    +PL  L       +    I +SLR+D + +   
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATIL 194

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           K+SR++   LI    V+VN+  V +    L  GD++SV G GR  +   +  T+  K+ +
Sbjct: 195 KISRTQSTKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKL 254

Query: 317 EL 318
           E+
Sbjct: 255 EV 256


>gi|373857241|ref|ZP_09599983.1| RNA-binding S4 domain protein [Bacillus sp. 1NLA3E]
 gi|372452891|gb|EHP26360.1| RNA-binding S4 domain protein [Bacillus sp. 1NLA3E]
          Length = 257

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           +DFL P   +     L +  +VK    GG   AER R          S+ D  +    + 
Sbjct: 34  TDFLDPREQQIVKTILGEHGEVKVAFFGGTQNAERKRALFSPDYYQVSEEDFRITLFEVH 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H   LGS++  G+ R K GDI L  E   QF    E+  YL T L+ VG  
Sbjct: 94  YPSKFVTIEHRHVLGSLMSLGLKRGKYGDI-LYDESTVQFFAAEEIGSYLSTQLQMVGKA 152

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           ++    IP           +      +SLR+D L S+ + +SR K   LI    V+VNWT
Sbjct: 153 TIRLEEIPFKKAVSVQEIWQEVSITASSLRLDTLISSIYPISRQKSQTLIGQKLVKVNWT 212

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            V         GD +SV G GR+KI  I   T+K K+ +
Sbjct: 213 VVESASFECCEGDTLSVRGFGRVKILSIEGRTKKDKWRI 251


>gi|312869508|ref|ZP_07729663.1| S4 domain protein [Lactobacillus oris PB013-T2-3]
 gi|417885433|ref|ZP_12529587.1| S4 domain protein [Lactobacillus oris F0423]
 gi|311094955|gb|EFQ53244.1| S4 domain protein [Lactobacillus oris PB013-T2-3]
 gi|341595355|gb|EGS38004.1| S4 domain protein [Lactobacillus oris F0423]
          Length = 260

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLS 138
           +  + +    AS +   + + FL P     +        +VK  + GG+  AE  R    
Sbjct: 17  IDQVADWISTASGQYRPVLTSFLNPRQRYIARTMANAADEVKMASAGGWAGAEMQRVLFY 76

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             + +  T+D ++   L I     F    H   +G+++G G+ R   GDI L G+   Q 
Sbjct: 77  PTYYQPTTADFEL-RVLEINYPTKFTEFHHRQIMGTLIGEGLERAAFGDI-LGGQGRWQV 134

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +V   +A YL  ++  +G V +    +    + +     +   T  +SLR+DA+ +AGF 
Sbjct: 135 VVTTAMAKYLRANVSHIGRVKIKWQPVEAANVLHPVEDWEPLTTTVSSLRLDAVVAAGFN 194

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
            SR++   L+ +G VR+NW  V +    +   D++SV   GRI++ E    TRKGK  V 
Sbjct: 195 YSRNRAKQLVEHGQVRLNWEEVDRPDEQVVVHDLISVRHGGRIRLDEAQGVTRKGKERVS 254

Query: 318 L 318
           L
Sbjct: 255 L 255


>gi|374583009|ref|ZP_09656103.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
           DSM 17734]
 gi|374419091|gb|EHQ91526.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
           DSM 17734]
          Length = 265

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 10/224 (4%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
           FL+  +   S   L K+  ++ +A+GG+P+AER R+ +G   E L S+   ++ LS+   
Sbjct: 43  FLSLAMRDWSEAVLHKV-HLEHLAEGGFPEAERVRILIGSRGEILASEDAQISILSVRPK 101

Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 220
                 +H   LGS++G G  R+  GDI + G  G       E+A +L+    + G   +
Sbjct: 102 DSRAQLAHPQILGSLMGLGFRRDVFGDIQV-GRSGFYVATTSEIAPFLLNHWTQAGREKI 160

Query: 221 SCTRIPLLAL---EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
                 LLA    +  P + +  +    S R+DA+ +  FK+SRS    LI  G VR   
Sbjct: 161 EV----LLANGEPDLLPDKGEERRITVNSSRLDAVIANAFKVSRSTAQELIIQGKVRRGG 216

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 321
             V+K  T  +  D++S  G GRIK+ E   TRK + A ++I +
Sbjct: 217 IVVSKADTEAQPDDMISCRGYGRIKLLESTQTRKERIAWQIILF 260


>gi|256846979|ref|ZP_05552425.1| RNA-binding S4 domain-containing protein [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715643|gb|EEU30618.1| RNA-binding S4 domain-containing protein [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 261

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           ++A  A   R VL ++FL P  +  +   + + AD++  + GGYP AE  R  + +P+  
Sbjct: 24  QIATAAGEYRPVL-TNFLNPRQIFIAETLVNREADLRFQSWGGYPDAEMQRFLI-YPDYY 81

Query: 146 TSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
             + +         N+   F    H   LG++LG+G+ R   GD IL  +   Q  V  E
Sbjct: 82  QPNREDFQINYYQINYPTKFVELHHRQILGTLLGSGLTRGSFGD-ILNNDLVWQIAVSRE 140

Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 263
           ++ ++   LE++G ++V   RI    L       +       SLR+DA+ +  F  SR++
Sbjct: 141 VSQFVDQELERIGRINVQFERISQDKLVLPDDDWEKVSITVPSLRLDAVIANAFNYSRNR 200

Query: 264 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI---GEINSTRKGKFAVELIQ 320
               I +G VRVNW  + +    +   D++SV   GRIK+   G  N     +  ++LI+
Sbjct: 201 AKAAIEHGLVRVNWEEIDRPDYQMAIHDLISVRHGGRIKLLQSGGKNRKNNLRLDIQLIK 260


>gi|375088332|ref|ZP_09734672.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
           51524]
 gi|374562370|gb|EHR33700.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
           51524]
          Length = 260

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 5/195 (2%)

Query: 127 GGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GG    ER R  +   + E +    DI A   I+    F   SH D LG+ILGTGI R+K
Sbjct: 62  GGTTGTERQRALIKPSYIEDVKGHYDI-ALCEISYPEKFSQLSHRDILGAILGTGIDRKK 120

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
           +GDII Q +   Q  V   L  +L   +  VG  +VS    PL          +    + 
Sbjct: 121 LGDII-QDDGRWQLFVDASLVSFLTLHVTTVGRTTVSLIEKPLKEAVPINEHWQKKNIVI 179

Query: 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304
           +S R+D   + G ++SR +   LI++  V++NWT+       +   DI+SV G GR+ + 
Sbjct: 180 SSRRLDVFIAGGLRISRDQAKQLIASSKVKLNWTSTENVSEDVNEKDIISVRGFGRLTLL 239

Query: 305 EIN-STRKGKFAVEL 318
            I+  TRK K AVE+
Sbjct: 240 SIDYRTRKDKLAVEI 254


>gi|405756200|ref|YP_006679664.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC2540]
 gi|404225400|emb|CBY76762.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2540]
          Length = 258

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          DI+S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDILSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|381336957|ref|YP_005174732.1| cell division protein [Leuconostoc mesenteroides subsp.
           mesenteroides J18]
 gi|356644923|gb|AET30766.1| cell division protein [Leuconostoc mesenteroides subsp.
           mesenteroides J18]
          Length = 265

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 5/238 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           VK + +  +++ +    + + FL P       + +   AD+     GG   AE  R  + 
Sbjct: 20  VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
             E    D +  ++ + I     F    H   LGS++ +GI+R  IGDI+  Q     Q 
Sbjct: 80  PKEYPQDDLEFEISLIEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQI 139

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGF 257
           ++  ++  Y+   + K+G+V VS     L   L +     ++F  + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQVSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
            LSRS    LI    VRVNW+ + K    L  GD++SV   GR++I  ++  ++KGK 
Sbjct: 199 DLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRKHGRVQIKLLDGISKKGKI 256


>gi|218282318|ref|ZP_03488608.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
 gi|218216691|gb|EEC90229.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
          Length = 242

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 11/206 (5%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           ++  V  GGY  AER +++   PE      D V  L  T N  F+  +H D LG ++ +G
Sbjct: 45  NICVVFDGGYENAER-KIACFIPEGYEGFSDCVC-LHATYNSKFKTLTHSDLLGCLMHSG 102

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-- 237
           I R  IGD+I+Q E         +++ Y+I +  ++G     CT    + L+YE  ++  
Sbjct: 103 IERSVIGDLIVQ-EDDLYIFCKEKISKYIIDNCAQIG----KCTVHFEVCLDYEITKSNK 157

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K  + + +SLR+D++ +     SRS+ +  I  G V+VN   + +N   L   D VS+  
Sbjct: 158 KEIRIMCSSLRLDSVVAQLSHCSRSEALKKIHAGFVKVNDVVLEQN-LQLCNNDFVSIRK 216

Query: 298 KGRIKIGE-INSTRKGKFAVELIQYL 322
            GR +  E +++T+KG+  +   QY+
Sbjct: 217 TGRFQFKEVVSTTKKGRLVLNFDQYI 242


>gi|377809539|ref|YP_005004760.1| hypothetical protein PECL_811 [Pediococcus claussenii ATCC BAA-344]
 gi|361056280|gb|AEV95084.1| hypothetical protein PECL_811 [Pediococcus claussenii ATCC BAA-344]
          Length = 262

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 5/217 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
           ++FL P         + ++ D++    GG+  +E  R  V   + + + +D ++ + L I
Sbjct: 36  TNFLNPREQYILQTLVNRVDDIRVEFDGGFSNSELKRGLVFPDYFQPIEADFNL-SILMI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LG+    GI R   GDII +GE   Q +V  EL+++ +  + ++G 
Sbjct: 95  DYPTKFAELEHRQILGTFANLGIERNTFGDIISEGETW-QIIVNRELSNFFLNEVTRIGK 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           + V    + +  +       +   T   SLR+D + S  F +SR +   LI +  VRVNW
Sbjct: 154 IKVQLKELEMTNIIQPSEDWEETDTTVKSLRLDLVISNVFNVSRQRAKALIEHKRVRVNW 213

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
           + V K    L+  D++SV   GRI++ E+N  T+KGK
Sbjct: 214 SIVEKPDFELQLNDMISVRQFGRIRVEELNGETKKGK 250


>gi|392426957|ref|YP_006467951.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
           SJ4]
 gi|391356920|gb|AFM42619.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
           SJ4]
          Length = 265

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 22/264 (8%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVA 125
           +LK   +K A     H+L+       R  +  + FL+  + +  E ++  E+LA    + 
Sbjct: 9   MLKFWSEKEAYLSAAHLLDQMDAVLHRNSMQVTTFLSFAMREWAEGILNKEQLA---YLL 65

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQP---CSHGDFLGSILGTGIAR 182
           +GG+P AER R+ +G  E      D  A LSI       P     H   LGS++G GI R
Sbjct: 66  EGGFPDAERVRIVIGSREETLDSAD--ANLSILEVLPANPHTQLEHRQILGSLIGLGIGR 123

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS--- 239
           E +GDI   G  G       E+A +L+   +  G   +       ++L +E P   S   
Sbjct: 124 EVLGDI-RAGLSGYYLAASTEIAPFLLDQWKAAGREKIK------VSLCHEKPNILSDVG 176

Query: 240 --FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
              +   +S R+DAL +  F +SR+     I  G VR     V+K    L+ G+ +S  G
Sbjct: 177 EQKRVTVSSTRLDALLAHSFGVSRASAQEWIKQGRVRREGLVVSKAELKLQPGETISCRG 236

Query: 298 KGRIKIGEINSTRKGKFAVELIQY 321
           +GRI++ E   TRK + A +L+ Y
Sbjct: 237 QGRIRLLECTQTRKERTAWQLVLY 260


>gi|268611660|ref|ZP_06145387.1| RNA-binding S4 [Ruminococcus flavefaciens FD-1]
          Length = 252

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 4/198 (2%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQ-PCSHGDFLGSILGTGIAREKI 185
           GG+P A R  L+V H        +    + +T  +  +   +H DFLG+ +G  + RE I
Sbjct: 57  GGFPDARRKMLAVYHDYCDEYVEEEYPFVCLTFTYRKEDKLTHRDFLGTFMGMQLKREVI 116

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDI++  E  AQ  V    A  +++S+ K+G V V  +      LE      K   T+ A
Sbjct: 117 GDIVV-AEGEAQAFVTEVAAKLILSSVSKIGRVGVKVSDDRPFELEVRQEYKKIIGTV-A 174

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+D + S    +SR     LI +  V VN  T +     L  GDI+SV G GR  +  
Sbjct: 175 SLRLDCIVSLAAHISRDSAAGLIRSDRVDVNHFTASSISQELHEGDIISVRGSGRYVLSA 234

Query: 306 INS-TRKGKFAVELIQYL 322
           +N  + KG+  VE+++Y+
Sbjct: 235 VNGLSGKGRIHVEVLKYI 252


>gi|116512743|ref|YP_811650.1| cell division protein [Lactococcus lactis subsp. cremoris SK11]
 gi|414074890|ref|YP_007000107.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
           subsp. cremoris UC509.9]
 gi|116108397|gb|ABJ73537.1| Cell division protein, S4-like domain [Lactococcus lactis subsp.
           cremoris SK11]
 gi|413974810|gb|AFW92274.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
           subsp. cremoris UC509.9]
          Length = 263

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           S F   P   E +  L    +V+  +     Q E  ++ +  P     D D   +A L I
Sbjct: 36  STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIALLEI 94

Query: 158 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   SH   LG+ LG  G+ R+++GDII+   K  Q  V   L +    S++K+G
Sbjct: 95  SYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDSK-IQIFVSKHLVESF-KSIDKIG 152

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
             +V    I L  L  +  R      +   LR+D + +  FK+SR+   N++ +  V++N
Sbjct: 153 RAAVKIDEISLTDLAQDTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVKIN 212

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 318
           +  + K   ++  GD++SV G GRIKI   +  T+KGK  VE+
Sbjct: 213 YQEIDKKDFSVGAGDLISVRGFGRIKILSLLGLTKKGKQRVEI 255


>gi|424714906|ref|YP_007015621.1| Putative RNA-binding protein ylmH [Listeria monocytogenes serotype
           4b str. LL195]
 gi|424014090|emb|CCO64630.1| Putative RNA-binding protein ylmH [Listeria monocytogenes serotype
           4b str. LL195]
          Length = 260

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 37  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 95

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 96  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 154

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 155 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 214

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 215 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 256


>gi|284802475|ref|YP_003414340.1| hypothetical protein LM5578_2231 [Listeria monocytogenes 08-5578]
 gi|284995617|ref|YP_003417385.1| hypothetical protein LM5923_2182 [Listeria monocytogenes 08-5923]
 gi|404284525|ref|YP_006685422.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC2372]
 gi|404411329|ref|YP_006696917.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC5850]
 gi|404414106|ref|YP_006699693.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC7179]
 gi|405759079|ref|YP_006688355.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC2479]
 gi|284058037|gb|ADB68978.1| hypothetical protein LM5578_2231 [Listeria monocytogenes 08-5578]
 gi|284061084|gb|ADB72023.1| hypothetical protein LM5923_2182 [Listeria monocytogenes 08-5923]
 gi|404231155|emb|CBY52559.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC5850]
 gi|404234027|emb|CBY55430.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2372]
 gi|404236961|emb|CBY58363.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2479]
 gi|404239805|emb|CBY61206.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC7179]
          Length = 259

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 36  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 95  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 154 VNVMLEETELTNAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 213

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 214 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 255


>gi|16804067|ref|NP_465552.1| hypothetical protein lmo2028 [Listeria monocytogenes EGD-e]
 gi|254827084|ref|ZP_05231771.1| S4 domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|255016669|ref|ZP_05288795.1| hypothetical protein LmonF_00281 [Listeria monocytogenes FSL
           F2-515]
 gi|255026556|ref|ZP_05298542.1| hypothetical protein LmonocytFSL_09855 [Listeria monocytogenes FSL
           J2-003]
 gi|386044335|ref|YP_005963140.1| hypothetical protein [Listeria monocytogenes 10403S]
 gi|386051003|ref|YP_005968994.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-561]
 gi|16411498|emb|CAD00106.1| lmo2028 [Listeria monocytogenes EGD-e]
 gi|258599467|gb|EEW12792.1| S4 domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|345537569|gb|AEO07009.1| hypothetical protein LMRG_01177 [Listeria monocytogenes 10403S]
 gi|346424849|gb|AEO26374.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-561]
          Length = 258

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETELTNAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|217963827|ref|YP_002349505.1| S4 domain-containing protein [Listeria monocytogenes HCC23]
 gi|386008792|ref|YP_005927070.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           L99]
 gi|386027401|ref|YP_005948177.1| hypothetical protein LMM7_2114 [Listeria monocytogenes M7]
 gi|217333097|gb|ACK38891.1| S4 domain protein [Listeria monocytogenes HCC23]
 gi|307571602|emb|CAR84781.1| RNA-binding S4 domain protein [Listeria monocytogenes L99]
 gi|336023982|gb|AEH93119.1| hypothetical protein LMM7_2114 [Listeria monocytogenes M7]
          Length = 259

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 36  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 95  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 154 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 213

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 214 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 255


>gi|168206094|ref|ZP_02632099.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
 gi|169343604|ref|ZP_02864603.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
 gi|169298164|gb|EDS80254.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
 gi|170662411|gb|EDT15094.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
          Length = 253

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V   +F TP V   S +    L DV   + G +   ER R+   + E     P  ++ L 
Sbjct: 34  VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I  N  F    H D+LGSI+  GI R KIGD+IL+ + G    V   + D+LI +L K+ 
Sbjct: 89  IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           N++  C  I  L  E   P  +    I  S R+D + +A   +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEVIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           +         +     +++ G G+ KI  I  +T+ G+  + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNILGTTKSGRLKLTVFKY 252


>gi|422810104|ref|ZP_16858515.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-208]
 gi|378751768|gb|EHY62356.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-208]
          Length = 258

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESAMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|226324966|ref|ZP_03800484.1| hypothetical protein COPCOM_02758 [Coprococcus comes ATCC 27758]
 gi|225206314|gb|EEG88668.1| S4 domain protein [Coprococcus comes ATCC 27758]
          Length = 258

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 127/253 (50%), Gaps = 16/253 (6%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ++E++  A  R  +++SDFL    L       +    V     GGY  +ER +++   
Sbjct: 10  KRLIELSNNAYQRGIIMYSDFLNLNELNILHTTPKDSFPVPYRTFGGYDPSER-QMAAFL 68

Query: 142 PEALTSDPD-----------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
           P+A     D           I+    +   F  +  SH D+LG++L  GI R K GDI++
Sbjct: 69  PDAFYMYMDEESIRSTYPIRILKISPLQPKFA-EELSHRDYLGALLNLGITRAKTGDILI 127

Query: 191 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 250
             +K A   V  EL ++L+  L +V + +V    +     ++EP + +  K   AS+R+D
Sbjct: 128 H-DKEAYVFVHQELTEFLVKELTRVRHTTVRAVEVENADFKWEP-KYEEIKGTVASVRLD 185

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINST 309
           +L S  F  SRSKL  LI  G V VN   +T NG  ++  DI+SV   GR +  G ++ T
Sbjct: 186 SLLSLAFSSSRSKLTALIEAGRVYVNGKLITSNGYHVKDNDIISVRQMGRFQYEGVLSET 245

Query: 310 RKGKFAVELIQYL 322
           +KG++ V + +Y+
Sbjct: 246 KKGRYYVTIRKYI 258


>gi|46908264|ref|YP_014653.1| S4 domain-containing protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47094010|ref|ZP_00231742.1| S4 domain protein [Listeria monocytogenes str. 4b H7858]
 gi|254826216|ref|ZP_05231217.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254933456|ref|ZP_05266815.1| S4 domain-containing protein [Listeria monocytogenes HPB2262]
 gi|254992791|ref|ZP_05274981.1| S4 domain protein [Listeria monocytogenes FSL J2-064]
 gi|255522100|ref|ZP_05389337.1| S4 domain protein [Listeria monocytogenes FSL J1-175]
 gi|386054282|ref|YP_005971840.1| S4 domain-containing protein [Listeria monocytogenes Finland 1998]
 gi|405750383|ref|YP_006673849.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           ATCC 19117]
 gi|405753256|ref|YP_006676721.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC2378]
 gi|417315684|ref|ZP_12102358.1| S4 domain protein [Listeria monocytogenes J1816]
 gi|417318120|ref|ZP_12104714.1| S4 domain protein [Listeria monocytogenes J1-220]
 gi|424823798|ref|ZP_18248811.1| S4 domain protein [Listeria monocytogenes str. Scott A]
 gi|46881535|gb|AAT04830.1| S4 domain protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017615|gb|EAL08416.1| S4 domain protein [Listeria monocytogenes str. 4b H7858]
 gi|293585017|gb|EFF97049.1| S4 domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293595457|gb|EFG03218.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|328466091|gb|EGF37261.1| S4 domain protein [Listeria monocytogenes J1816]
 gi|328472677|gb|EGF43535.1| S4 domain protein [Listeria monocytogenes J1-220]
 gi|332312478|gb|EGJ25573.1| S4 domain protein [Listeria monocytogenes str. Scott A]
 gi|346646933|gb|AEO39558.1| S4 domain-containing protein [Listeria monocytogenes Finland 1998]
 gi|404219583|emb|CBY70947.1| RNA-binding S4 domain protein [Listeria monocytogenes ATCC 19117]
 gi|404222456|emb|CBY73819.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2378]
          Length = 258

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|110800170|ref|YP_696535.1| S4 domain-containing protein [Clostridium perfringens ATCC 13124]
 gi|182625685|ref|ZP_02953454.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
 gi|422346521|ref|ZP_16427435.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
           WAL-14572]
 gi|422874771|ref|ZP_16921256.1| S4 domain-containing protein [Clostridium perfringens F262]
 gi|110674817|gb|ABG83804.1| S4 domain protein [Clostridium perfringens ATCC 13124]
 gi|177909087|gb|EDT71562.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
 gi|373226066|gb|EHP48393.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
           WAL-14572]
 gi|380304412|gb|EIA16701.1| S4 domain-containing protein [Clostridium perfringens F262]
          Length = 253

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V   +F TP V   S +    L DV   + G +   ER R+   + E     P  ++ L 
Sbjct: 34  VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I  N  F    H D+LGSI+  GI R KIGD+IL+ + G    V   + D+LI +L K+ 
Sbjct: 89  IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           N++  C  I  L  E   P  +    I  S R+D + +A   +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           +         +     +++ G G+ KI  I  +T+ G+  + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKY 252


>gi|419706460|ref|ZP_14233981.1| Hypothetical protein PS4_51353 [Streptococcus salivarius PS4]
 gi|383283781|gb|EIC81724.1| Hypothetical protein PS4_51353 [Streptococcus salivarius PS4]
          Length = 267

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 108/212 (50%), Gaps = 11/212 (5%)

Query: 100 SDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
           +DFL P      +  +E LA+   +K      +   E  R+ +       SD D  +  L
Sbjct: 38  TDFLNP----REIQIVEDLANYYHLKFFVSSNHETEEYRRVIIAPDYYELSDDDFEIKRL 93

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            ++    F   +H   LG+++   G+ R+  GDII+  +   QF +   LA+Y I +++K
Sbjct: 94  EVSYARQFNTLTHPKILGTLINQLGLERQVFGDIIINDDGRIQFSIASHLANYAIMTIKK 153

Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +GNVSV+   I     +  +   + SF  + +S+R+D + +    +SRS+ + LIS+G V
Sbjct: 154 IGNVSVTLKEISEEDWITNQENYSHSF-VLLSSMRLDNVLATVLNISRSRALKLISSGKV 212

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           ++N+  V K    +  GD++SV G GR ++ E
Sbjct: 213 KLNYRQVEKADQLITIGDMISVRGFGRFRLAE 244


>gi|410495317|ref|YP_006905163.1| RNA-binding protein ylmH [Streptococcus dysgalactiae subsp.
           equisimilis AC-2713]
 gi|410440477|emb|CCI63105.1| Putative RNA-binding protein ylmH [Streptococcus dysgalactiae
           subsp. equisimilis AC-2713]
          Length = 263

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
           +M  R  S   +  +DFL P    +LK    +L    D+K  +   Y  +E  R+ V   
Sbjct: 24  DMINRVDSHYLLEVTDFLNPREITILK----SLVAPTDLKVFSSTDYYPSEYGRVIVAPD 79

Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
                + D  +A + IT    F   +HG  LG+++   GI R  +GDI +  E G AQ +
Sbjct: 80  YYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  +L  Y++T++ K+   SVS   IPL          +    + +SLR+D L +   K 
Sbjct: 138 INRQLLGYVLTTISKIARASVSLKEIPLNQRINSSNDVQLVDIMVSSLRLDRLVATVLKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++ + LI    V+VN+  V K    L  GD+VS+ G GR  +   N  T+ G + + L
Sbjct: 198 SRAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGNYKLTL 257


>gi|197301723|ref|ZP_03166793.1| hypothetical protein RUMLAC_00449 [Ruminococcus lactaris ATCC
           29176]
 gi|197299163|gb|EDY33693.1| S4 domain protein [Ruminococcus lactaris ATCC 29176]
          Length = 270

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 133/276 (48%), Gaps = 27/276 (9%)

Query: 68  LLKGVGDKNAIEEV----KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD--- 120
           + K   + N+ +EV    + +++++R A  R  +  +DFL    L E  +      D   
Sbjct: 1   MAKNYSNGNSEKEVHLLERRLIDLSRVAYQRDIITFTDFLN---LNEQNILHTLPKDSLY 57

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-------------S 167
              +  GGY  AER +++   PEAL+        L     + FQ               +
Sbjct: 58  TGYILFGGYASAER-QMAAFIPEALSLRYGKKNLLPEELGYPFQAVEICPRNIRFAEDLT 116

Query: 168 HGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL 227
           H DFLG+IL  GI R + GDI+L+ E  A      E+A+ +   L  V +  V C    L
Sbjct: 117 HRDFLGAILNLGIERSRTGDILLE-EHRAYLFAQTEIAELVSRELSNVRHTPVKCRLTEL 175

Query: 228 LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTL 287
             +EY  PRT++ +   +S+R+D+L    F  SRS+L  LI    V VN   +T NG  +
Sbjct: 176 EGVEY-VPRTEAVRGTVSSVRLDSLLPLAFSSSRSRLSGLIEGAKVFVNGKLITSNGYQV 234

Query: 288 RTGDIVSVSGKGRIK-IGEINSTRKGKFAVELIQYL 322
           +  D++SV G G+ + IG    T+K + +VE+ +Y+
Sbjct: 235 KENDLISVRGMGKFRYIGTGGKTKKNRLSVEIERYI 270


>gi|47097617|ref|ZP_00235141.1| S4 domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254912587|ref|ZP_05262599.1| S4 domain-containing protein [Listeria monocytogenes J2818]
 gi|254936913|ref|ZP_05268610.1| S4 domain-containing protein [Listeria monocytogenes F6900]
 gi|386047680|ref|YP_005966012.1| S4 domain-containing protein [Listeria monocytogenes J0161]
 gi|47014004|gb|EAL05013.1| S4 domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258609513|gb|EEW22121.1| S4 domain-containing protein [Listeria monocytogenes F6900]
 gi|293590578|gb|EFF98912.1| S4 domain-containing protein [Listeria monocytogenes J2818]
 gi|345534671|gb|AEO04112.1| S4 domain-containing protein [Listeria monocytogenes J0161]
          Length = 258

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|295091872|emb|CBK77979.1| Uncharacterized conserved protein, contains S4-like domain
           [Clostridium cf. saccharolyticum K10]
          Length = 251

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 19/250 (7%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---C 135
           K I+E+A     R    ++DFL    L E  +  ++E+ L  V+ +  GGY  AER   C
Sbjct: 10  KRIMELAALCYQRDIPSYTDFLN---LNEQTVFHSIERSLPPVRYLITGGYEPAERKIVC 66

Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
            L     +A      I+    +   F  +  +H D+LG+++  GI R  +GDI++  E G
Sbjct: 67  FLPSYEEDATNLPISILKVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVIN-EDG 124

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL---RVDAL 252
                +  +A+Y+   L +V   SVSCT +P  +   E    + F+ I  S+   R+D +
Sbjct: 125 CFIFCLERMAEYISGELRQVRRTSVSCTAVPAFSCRVE----QKFEEIRGSIASPRLDNV 180

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRK 311
            S  +  SR+K++  I    V V+          L+ G+IVSV G G+    G  N TRK
Sbjct: 181 LSLVYHTSRTKILPYIQGEKVFVDGKLAVSPSMQLKGGEIVSVRGLGKFLFTGTENETRK 240

Query: 312 GKFAVELIQY 321
           G+    + +Y
Sbjct: 241 GRIFAAVRRY 250


>gi|227431973|ref|ZP_03913993.1| ribosomal protein S4e [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352258|gb|EEJ42464.1| ribosomal protein S4e [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 265

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 5/237 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           VK + +  +++ +    + + FL P       + +   AD+     GG   AE  R  + 
Sbjct: 20  VKQVDDWIQQSRNEYRSILTRFLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILI 79

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
             E    D +  ++ L I     F    H   LGS++ +GI+R  IGDI+  Q     Q 
Sbjct: 80  PKEYPQDDLEFEISLLEIKYPTKFDDLHHSTILGSMMYSGISRNVIGDILYDQTYSRWQI 139

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGF 257
           ++  ++  Y+   + K+G+V +S     L   L +     ++F  + +SLR+D + SAGF
Sbjct: 140 IIDSKMQHYMQQMVTKIGHVQLSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGF 198

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 313
            LSRS    LI    VRVNW+ + K    L  GD++SV   GR++I  ++  ++KGK
Sbjct: 199 DLSRSGAKKLIEENQVRVNWSEIVKPDAELAIGDVISVRKHGRVQIKLLDGISKKGK 255


>gi|110802596|ref|YP_699135.1| S4 domain-containing protein [Clostridium perfringens SM101]
 gi|110683097|gb|ABG86467.1| S4 domain protein [Clostridium perfringens SM101]
          Length = 253

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V   +F TP V   S +    L DV   + G +   ER R+   + E     P  ++ L 
Sbjct: 34  VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I  N  F    H D+LGSI+  GI R KIGD+IL+ + G    V   + D+LI +L K+ 
Sbjct: 89  IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           N++  C  I  L  E   P  +    I  S R+D + +A   +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-ETPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           +         +     +++ G G+ KI  I  +T+ G+  + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKY 252


>gi|339301993|ref|ZP_08651066.1| S4 domain-containing protein YlmH [Streptococcus agalactiae ATCC
           13813]
 gi|319744574|gb|EFV96927.1| S4 domain-containing protein YlmH [Streptococcus agalactiae ATCC
           13813]
          Length = 262

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  I  +A+   +    + ++FL P   K     LE+         G Y Q E  ++ + 
Sbjct: 18  INKIDHLAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA 76

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
            PE    D  D  ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ
Sbjct: 77  -PEYYQLDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            LV  ++ ++L+ S+ K+G  SV    +PL          +    I +SLR+D + +   
Sbjct: 135 VLVDSQMTNHLVHSVTKIGTASVQLAEVPLSKFLTPKQDIQKLTVIASSLRLDKILATIL 194

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           K+SR++   LI    V+VN+  V +    L  GD++SV G GR  +   +  T+  K+ +
Sbjct: 195 KISRTQSTKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKL 254

Query: 317 EL 318
           E+
Sbjct: 255 EV 256


>gi|372325203|ref|ZP_09519792.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
 gi|366984011|gb|EHN59410.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
          Length = 257

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 95  REVLHSDFLTPPVLKESMMALEKLADVKA---VAQGGYPQAERCRLSVGHPEALTSDPDI 151
           R      FLT  +     + L  LA   A   V  GGYPQAE  R  +G  E   +D  I
Sbjct: 27  RAAFKDSFLTVFLNPREQLLLAGLAKQDALPIVFSGGYPQAENKRALIG-AEDGKADFQI 85

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
            A L +     +    H   LGS+L  GIA ++IGD+I + ++  Q L+  +LA++++ +
Sbjct: 86  -AVLQLDYAVKYIHLHHSTILGSLLHQGIAYDRIGDVIHEADRW-QILIDAQLAEFVVEN 143

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           +++ G+  ++   +    +       K  + I AS R+D L S  +  SR+   +LI +G
Sbjct: 144 VKRAGSKKIAFHEVAASEMLAPESDEKEKEVIVASQRIDLLISQIYNFSRAHAKDLIESG 203

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST 309
            V VNW          + GD++S    GRI++ E   T
Sbjct: 204 QVMVNWFENDNPSYLAKLGDVISTHSFGRIRLIETRGT 241


>gi|357636717|ref|ZP_09134592.1| S4 domain protein [Streptococcus macacae NCTC 11558]
 gi|357585171|gb|EHJ52374.1| S4 domain protein [Streptococcus macacae NCTC 11558]
          Length = 264

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSI 157
           +DF+ P  +K  M  +    D++      Y  +E  RL +   + E   +D +I + L I
Sbjct: 37  TDFINPRQVK-VMQTIISQTDLQVYLSSDYIPSEYARLLIAPVYYELDIADFEI-SLLEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
             N  F   +H   LG++L   G+ R+ +GDII+Q E+ AQF +   +  YL   + K+G
Sbjct: 95  NYNNKFNRLTHAQILGTLLNKLGVKRQILGDIIVQ-ERRAQFFIESSMVSYLTAQVSKIG 153

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
             +VS  ++ L      P        + +S+R+D + S+  K+SR     LI    V++N
Sbjct: 154 KAAVSFKKLELNEQLENPSDYTEVDILVSSMRLDKVISSVLKVSRGTASKLIEGEKVKLN 213

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           +   +K    +  GD+VS+ G GR  +   N  ++ GK+ +
Sbjct: 214 YLVQSKISCLVEVGDLVSIRGYGRFILKRDNGFSKSGKYKL 254


>gi|168210785|ref|ZP_02636410.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711149|gb|EDT23331.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 253

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V   +F TP V   S +    L DV   + G +   ER  ++    E    D   ++ L 
Sbjct: 34  VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I  N  F    H D+LGSI+  GI R KIGD+IL+ + G    V   + D+LI +L K+ 
Sbjct: 89  IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           N++  C  I  L  E   P  +    I  S R+D + +A   +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           +         +     +++ G G+ KI  I  +T+ G+  + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGVGKFKISNIFGTTKSGRLKLTVFKY 252


>gi|259503039|ref|ZP_05745941.1| S4 domain-containing protein YlmH [Lactobacillus antri DSM 16041]
 gi|259168905|gb|EEW53400.1| S4 domain-containing protein YlmH [Lactobacillus antri DSM 16041]
          Length = 260

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLS 138
           +  + +    ASS+   + + FL P     +        +VK  + GG+  AE  R    
Sbjct: 17  IDQVADWISTASSQYRPVLTVFLNPRQRYIARTMANAADEVKMASAGGWSGAEMQRVLFY 76

Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQ 197
             + +   +D ++   L +     F    H   +G+++G G+ R   GDI+  G++G  Q
Sbjct: 77  PAYYQPTAADFEL-RVLEVNYPTKFTELHHRQIMGTLIGEGLERSAFGDIL--GDQGRWQ 133

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            +V   +A YL  ++  +G   +    +    + +     ++  T  +SLR+DA+ +AGF
Sbjct: 134 VVVTTAMAKYLQANVNHIGRAKIKWRPVETADVLHPVEDWEALTTTVSSLRLDAVVAAGF 193

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             SR++   L+ +G VR+NW  V +    +   D++SV   GRI++ E +  TRKGK  V
Sbjct: 194 NYSRNRAKQLVEHGQVRLNWEEVDRPDEQVVVHDLISVRHGGRIRLDETHGVTRKGKERV 253

Query: 317 EL 318
            L
Sbjct: 254 SL 255


>gi|402311264|ref|ZP_10830212.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
 gi|400365410|gb|EJP18462.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
          Length = 262

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
           +DF+ P   K  +  L   +D +     GG  ++ER +L V +P    ++    V  L +
Sbjct: 39  TDFMNPYEQKVFISILNAFSDDISYTLFGGAEKSER-KLFVIYPVYHMNEIKCPVKLLRL 97

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
            GNF F+  SH D LG+++  GI REK GDI L  E     ++   + DYL+T+ + + +
Sbjct: 98  YGNFKFEKISHRDCLGALMSMGIVREKTGDIYLH-EDYVDIVIDESIDDYLLTNFKSIRH 156

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            SV    + +  LE             +SLR+D + S  + L R+   N++ +  V+V++
Sbjct: 157 CSVKSKILDIDELEVSKQEFDVKLCSVSSLRLDNIISEAYNLPRATSTNIVKSNRVKVDY 216

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 318
             +      +    ++SV G GR + I +   ++KGK  VEL
Sbjct: 217 EPILSPSKEVADNCLISVKGYGRFRYITQKGMSKKGKIRVEL 258


>gi|420143356|ref|ZP_14650857.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
 gi|391856875|gb|EIT67411.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
          Length = 265

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +L+   R  +   V+ + FL P  + E + +L    +++  +     Q E  ++ + 
Sbjct: 18  IDRVLDWMERVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA 76

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQ 197
            PE    D  D  +A L I+    F    H   LGS LG TGI R +IGDIIL  E   Q
Sbjct: 77  -PEFYQLDILDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEGRVQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAG 256
             V   L +    ++ K+G+ +V     P    LE E    +    + +SLR+D + ++ 
Sbjct: 135 VFVSKHLLEIFQNNIRKIGSATVKFVEKPFEERLETETSSVRKVVLV-SSLRIDKIIAST 193

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFA 315
           F++SR+  VN++    V++N+  + K    +  GD++SV G GRIKI + +  T+KGK  
Sbjct: 194 FEISRNLAVNMLQLRKVKLNYLEIEKKDFPVEPGDLISVRGLGRIKILKMLGETKKGKQK 253

Query: 316 VE 317
           +E
Sbjct: 254 IE 255


>gi|18310834|ref|NP_562768.1| S4 domain-containing protein [Clostridium perfringens str. 13]
 gi|168215480|ref|ZP_02641105.1| S4 domain protein [Clostridium perfringens NCTC 8239]
 gi|18145516|dbj|BAB81558.1| probable cell-division protein [Clostridium perfringens str. 13]
 gi|182382018|gb|EDT79497.1| S4 domain protein [Clostridium perfringens NCTC 8239]
          Length = 253

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V   +F TP V   S +    L DV   + G +   ER  ++    E    D   ++ L 
Sbjct: 34  VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I  N  F    H D+LGSI+  GI R KIGD+IL+ + G    V   + D+LI +L K+ 
Sbjct: 89  IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
           N++  C  I  L  E   P  +    I  S R+D + +A   +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 321
           +         +     +++ G G+ KI  I  +T+ G+  + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKY 252


>gi|283797929|ref|ZP_06347082.1| putative S4 domain protein [Clostridium sp. M62/1]
 gi|291074397|gb|EFE11761.1| S4 domain protein [Clostridium sp. M62/1]
          Length = 251

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 19/250 (7%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---C 135
           K I+E+A     R    ++DFL    L E  +  ++E+ L  V+ +  GGY  AER   C
Sbjct: 10  KRIMELAALCYQRDIPSYTDFLN---LNEQTVFHSIERSLPPVRYLMTGGYEPAERKIVC 66

Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
            L     +A      I+    +   F  +  +H D+LG+++  GI R  +GDI++  E G
Sbjct: 67  FLPSYEEDATNLPISILKVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVIN-EDG 124

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL---RVDAL 252
                +  +A+Y+   L +V   SVSCT +P  +   E    + F+ I  S+   R+D +
Sbjct: 125 CFIFCLERMAEYISGELRQVRRTSVSCTAVPAFSCRVE----QKFEEIRGSIASPRLDNV 180

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRK 311
            S  +  SR K++  I    V V+          L+ G+IVSV G G+    G  N TRK
Sbjct: 181 LSLVYHTSRPKILPYIQGEKVFVDGKLAVSPSMQLKGGEIVSVRGLGKFLFTGTENETRK 240

Query: 312 GKFAVELIQY 321
           G+    + +Y
Sbjct: 241 GRIFAAVRRY 250


>gi|295692695|ref|YP_003601305.1| cell division protein, s4-like domain [Lactobacillus crispatus ST1]
 gi|295030801|emb|CBL50280.1| Cell division protein, S4-like domain [Lactobacillus crispatus ST1]
          Length = 266

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      D      GGYP AE+ R+ +   E L   P    
Sbjct: 34  KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI     GDII   +   QF    E+ ++    
Sbjct: 91  IQPYEIEYPQKFTKINHSVILGTLANSGIDTSIFGDIITDNQGKWQFFTKKEMTEFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 269
           ++++G   V     P+   E   P   S +  E  AS+R+DA+ S   + SR ++  +I+
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTEIVASMRIDAVLSGISRQSRGQIQKMIN 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +  V++NW  +  +   ++  D++S+   GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHEIADSNIMIKEDDVLSLRHFGRILIEDVSTTRKGKYKVVL 257


>gi|389855204|ref|YP_006357448.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
 gi|300071626|gb|ADJ61026.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 263

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           S F   P   E +  L    +V+  +     Q E  ++ +  P     D D   +A L I
Sbjct: 36  STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIALLEI 94

Query: 158 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   SH   LG+ LG  G+ R+++GDII+   K  Q  V   L +    S++K+G
Sbjct: 95  SYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDRK-IQIFVSKHLVESF-KSIDKIG 152

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
             +V    I L  L     R      +   LR+D + +  FK+SR+   N++ +  V++N
Sbjct: 153 RAAVKIDEISLTDLAQNTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVKIN 212

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 318
           +  + K   ++  GD++SV G GRIKI   +  T+KGK  VE+
Sbjct: 213 YQEIDKKDFSVGAGDLISVRGFGRIKILSLLGLTKKGKQRVEI 255


>gi|167745612|ref|ZP_02417739.1| hypothetical protein ANACAC_00304 [Anaerostipes caccae DSM 14662]
 gi|167654924|gb|EDR99053.1| S4 domain protein [Anaerostipes caccae DSM 14662]
          Length = 250

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 20/251 (7%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCR 136
           K + E+A+ A      ++S +   P L E   +L     ++L+   A   GG+   +RC 
Sbjct: 8   KRLEELAQTA-----FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCI 62

Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIIL-QG 192
           +  G  E    + +I +A   I+  F    +  +H D+LG+++  GI R +IGDI++  G
Sbjct: 63  VVFGSKEMFGYEGEIPLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDG 122

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY-EPPRTKSFKTIEASLRVDA 251
           E  A       +A++L   L KV N  V    +    + Y +   TK      +S R+DA
Sbjct: 123 E--AYVFCFRHMAEFLCRELTKVRNTQVETVGVDFKEIHYWQEYSTKD--GFVSSPRLDA 178

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 310
           L    F LSRSK ++L  +  V +     T+N    +  D++SV G G+ +  E+   T+
Sbjct: 179 LVGLAFGLSRSKALSLFQSQKVFIRGKMETRNSYQAKPEDVISVRGFGKFRFQELGRETK 238

Query: 311 KGKFAVELIQY 321
           KG+F V+L  Y
Sbjct: 239 KGRFHVKLQIY 249


>gi|306820242|ref|ZP_07453884.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551739|gb|EFM39688.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 262

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
           +DF+ P   K  +  L   +D  + A  GG  ++ER ++ V +P     +    V  L +
Sbjct: 39  TDFMNPYEQKVFISILNAFSDEISYALFGGDEKSER-KIFVIYPVYQMDEIKCPVKLLRL 97

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
            GNF F+  SH D LG+++  GI REK GDI L  E     ++   + DYL+T+ + + +
Sbjct: 98  YGNFKFEKISHRDCLGALMSMGIVREKTGDIYLH-EDYVDIVIDESIDDYLLTNFKSIRH 156

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            SV    + +  LE+            +SLR+D + S  + L R+   N++ +  V+V++
Sbjct: 157 CSVKSKILDIDELEFSKQEFDVKLCSVSSLRLDNIISEVYNLPRATSTNIVKSNRVKVDY 216

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 318
             +      +    ++SV G GR + I +   ++KGK  VEL
Sbjct: 217 EPILSPSKEVADNCLISVKGYGRFRYISQKGMSKKGKIRVEL 258


>gi|422824075|ref|ZP_16872263.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK405]
 gi|422825850|ref|ZP_16874029.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK678]
 gi|324993402|gb|EGC25322.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK405]
 gi|324995286|gb|EGC27198.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK678]
          Length = 261

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A  GY  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSGYYPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G++ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + K+  + V    +    L  E  +  + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SR++   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRNQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|340399072|ref|YP_004728097.1| cell division protein, contains S4-like domain [Streptococcus
           salivarius CCHSS3]
 gi|387761540|ref|YP_006068517.1| RNA binding protein [Streptococcus salivarius 57.I]
 gi|338743065|emb|CCB93573.1| cell division protein, contains S4-like domain [Streptococcus
           salivarius CCHSS3]
 gi|339292307|gb|AEJ53654.1| RNA binding protein [Streptococcus salivarius 57.I]
          Length = 267

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 16/228 (7%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
           +DFL P      +  +E+LA   ++K          E  R+ +  PE    D D   +  
Sbjct: 38  TDFLNP----REIQIVEELAHYYNLKFFVSSTLESEEYGRVILA-PEYYELDDDDFEIKR 92

Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I+    F   +H   LG+++   G+ R+  GDIIL  E   QF +   LA Y I ++ 
Sbjct: 93  LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTIT 152

Query: 214 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
           K+GNVSV+   +     +  +   ++SF  + +S+R+D + +    LSRS  + LI++G 
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLIASGK 211

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           V++N+  + K   T+  GD++SV G GR ++ +    + + K K  +E
Sbjct: 212 VKLNYRQIEKANQTVMIGDMISVRGYGRFRLAQQDGFSKSGKAKIVIE 259


>gi|422876956|ref|ZP_16923426.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1056]
 gi|332361764|gb|EGJ39568.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1056]
          Length = 261

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G++ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + KV  + V    +    L  E  +  + + + +SLR+D L ++ FKL
Sbjct: 136 VAKRLAQYFIDHVTKVAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|126649713|ref|ZP_01721949.1| hypothetical protein BB14905_15985 [Bacillus sp. B14905]
 gi|126593432|gb|EAZ87377.1| hypothetical protein BB14905_15985 [Bacillus sp. B14905]
          Length = 262

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 11/229 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ ++   R    R     +DFL P         + +   +  +  G + +AER R+ + 
Sbjct: 16  IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQDDSMNTLCAGLFNEAERQRMLIY 75

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
                 +D D  + A ++     F    H D LG++L  G+ R K GDI +  E   QF+
Sbjct: 76  PAYYEPTDKDFQLTAFTLQYPVKFVQLRHPDVLGALLSLGLNRSKFGDIRV-SEHQIQFV 134

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALAS 254
           V  E+A+Y+   L  +G V V    +     E EP      + +E      S+R+D + +
Sbjct: 135 VAKEVAEYVRLHLTGIGKVKVHVESLK----EQEPLLINEDEWLEESHTVTSMRLDVIIA 190

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
              K+SR K   LI+   VRVNWT        L+ GDI+S+ G GR+KI
Sbjct: 191 TVLKVSRQKAQALITGKKVRVNWTERDAVAFELQEGDILSIRGSGRLKI 239


>gi|293400860|ref|ZP_06645005.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305886|gb|EFE47130.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 251

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSV 139
           VK I ++      RR ++ + F  P    E  +    L   +     GGY  AERCR ++
Sbjct: 15  VKRIYDLIDLMERRRRIVVTPFFAPD---ECNICDAILGHQIPYRKSGGYQGAERCRYAL 71

Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
              E   +D  I   L  T +  F   +H D LG+IL  GI REKIGD+I++  +   F 
Sbjct: 72  LPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIGDLIVKDNELIIF- 129

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V  E+ +Y++ +L ++   +V   R     + YEP      K + +SLR+D L S+   +
Sbjct: 130 VDEEIENYIVCNLTRIKRSNVHFKRYEG-EVTYEPKIRYEHKIV-SSLRLDVLVSSFANI 187

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           SR K   LI  G V+VN   + +          +S+ G GR    EI  T K
Sbjct: 188 SRKKAQELIRAGLVKVNHVILEETSYLCNNNSAISIRGHGRFHFKEIVKTTK 239


>gi|419718759|ref|ZP_14246065.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
 gi|383305099|gb|EIC96478.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
          Length = 249

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 17/241 (7%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
           L++AR A  +  V HS FL         M   +L ++K+V  GGY +AER   C      
Sbjct: 13  LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCEKK 72

Query: 142 PEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
           P     D D++  +SI   N  F +  SH DFLG+I+  GI R  IGDI +  +  A  +
Sbjct: 73  P-----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDICVV-DNIAHII 126

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-FKTIEA-SLRVDALASAGF 257
               ++D +I  L  V +  V   +    +++Y     +S +K I   S R+D++  + +
Sbjct: 127 TFKSMSDTIINELGTVKHTKVVLNK---ESIDYLKTVNRSEYKKINIPSERLDSVIGSIY 183

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SRSK+   I  G V +N      +   ++ GDI++V G GR +   I+S +RKG+   
Sbjct: 184 NISRSKVNMYIDAGRVFINSKQCLSHSMKVKNGDIITVRGLGRARFLCISSMSRKGRLFA 243

Query: 317 E 317
           E
Sbjct: 244 E 244


>gi|347522217|ref|YP_004779788.1| hypothetical protein LCGT_1611 [Lactococcus garvieae ATCC 49156]
 gi|385833602|ref|YP_005871377.1| hypothetical protein [Lactococcus garvieae Lg2]
 gi|343180785|dbj|BAK59124.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
 gi|343182755|dbj|BAK61093.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
          Length = 265

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  +L+   R  +   V+ + FL P  + E + +L    +++  +     Q E  ++ + 
Sbjct: 18  IDRVLDWMDRVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA 76

Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQ 197
            PE    D  D  +A L I+    F    H   LGS LG TGI R +IGDIIL  E   Q
Sbjct: 77  -PEFYQLDILDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEGRVQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAG 256
             V   L +    ++ K+G+ +V     P    LE E    +    + +SLR+D + ++ 
Sbjct: 135 VFVSKHLLEIFQNNIRKIGSATVKFVEKPFEERLETETSSVRKVVLV-SSLRIDKIIAST 193

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFA 315
           F++SR+  VN++    V++N+  + K    +  GD++SV G GRIKI + +  T+KGK  
Sbjct: 194 FEISRNLAVNMLQLRKVKLNYLEIEKKDFPVEPGDLISVRGLGRIKILKMLGETKKGKQK 253

Query: 316 VE 317
           +E
Sbjct: 254 IE 255


>gi|226224634|ref|YP_002758741.1| hypothetical protein Lm4b_02049 [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|386732771|ref|YP_006206267.1| hypothetical protein MUO_10410 [Listeria monocytogenes 07PF0776]
 gi|406704815|ref|YP_006755169.1| RNA-binding S4 domain protein [Listeria monocytogenes L312]
 gi|225877096|emb|CAS05808.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|384391529|gb|AFH80599.1| hypothetical protein MUO_10410 [Listeria monocytogenes 07PF0776]
 gi|406361845|emb|CBY68118.1| RNA-binding S4 domain protein [Listeria monocytogenes L312]
          Length = 258

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNVHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|315651408|ref|ZP_07904433.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
 gi|315486367|gb|EFU76724.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
          Length = 249

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 17/241 (7%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
           L++AR A  +  V HS FL         M   +L ++K+V  GGY +AER   C      
Sbjct: 13  LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCDKK 72

Query: 142 PEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
           P     D D++  +SI   N  F +  SH DFLG+I+  GI R  IGDI +  +  A  +
Sbjct: 73  P-----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDICVV-DNIAHII 126

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-FKTIEA-SLRVDALASAGF 257
               ++D +I  L  V +  V   +    +++Y     +S +K I   S R+D++  + +
Sbjct: 127 TFKSMSDTIINELGTVKHTKVVLNK---ESIDYLKTVNRSEYKKINIPSERLDSVIGSIY 183

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
            +SRSK+   I  G V +N      +   ++ GDI++V G GR +   I+S +RKG+   
Sbjct: 184 NISRSKVNMYIDAGRVFINSKQCLSHSMKVKNGDIITVRGLGRARFLCISSMSRKGRLFA 243

Query: 317 E 317
           E
Sbjct: 244 E 244


>gi|342732562|ref|YP_004771401.1| RNA-binding S4 domain-containing protein [Candidatus Arthromitus
           sp. SFB-mouse-Japan]
 gi|384455957|ref|YP_005668552.1| S4 domain-containing protein [Candidatus Arthromitus sp.
           SFB-mouse-Yit]
 gi|417960523|ref|ZP_12603108.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
 gi|417960704|ref|ZP_12603246.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
 gi|417965490|ref|ZP_12607008.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
 gi|417967085|ref|ZP_12608281.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
 gi|417969082|ref|ZP_12610044.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
 gi|418016032|ref|ZP_12655597.1| S4 domain-containing protein [Candidatus Arthromitus sp.
           SFB-mouse-NYU]
 gi|418372818|ref|ZP_12964910.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
           SFB-mouse-SU]
 gi|342330017|dbj|BAK56659.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
           SFB-mouse-Japan]
 gi|345506367|gb|EGX28661.1| S4 domain-containing protein [Candidatus Arthromitus sp.
           SFB-mouse-NYU]
 gi|346984300|dbj|BAK79976.1| S4 domain protein [Candidatus Arthromitus sp. SFB-mouse-Yit]
 gi|380330842|gb|EIA22005.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
 gi|380335279|gb|EIA25512.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
 gi|380337448|gb|EIA26502.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
 gi|380338195|gb|EIA27122.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
 gi|380338451|gb|EIA27338.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
 gi|380342487|gb|EIA30932.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
           SFB-mouse-SU]
          Length = 258

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 25/259 (9%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRA-SSRREVLHSDFLTPPVLKESMMALEKLADVKAV 124
           +D +K  G  N+IE+   +  +   A  S R ++ ++F T  V       L+     K +
Sbjct: 5   NDFIKSCG--NSIEDADKLFSLYVSALKSGRTIVTNEFYTINVCN----TLKNFLSSKEL 58

Query: 125 AQGGY---PQAERCRLSVGHPEALTSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGI 180
              GY     AERC ++        S  D  A  + I+ N  F   SH DFLGSI+  G 
Sbjct: 59  NVSGYGFSDDAERCLIAFSLASIDVSIFDNAAKVVKISYNDKFSKLSHRDFLGSIMSLGF 118

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSC-TRIPLLALEYEPP 235
           +REKIGD++++G       VV +  +Y++ +L KV     NV+V    R+P         
Sbjct: 119 SREKIGDLVIEGN-CVYTPVVSDFVNYIVQNLTKVRYSPVNVTVELFNRLP-------QK 170

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           R +    I +SLR+D + S+   LSR K   ++  G V++N    +     +   DI+ +
Sbjct: 171 RFEILYKIVSSLRIDNIVSSLINLSRDKAKAIVKEGKVKINGIFESNPDRKVCENDIIVI 230

Query: 296 SGKGRIKIGE-INSTRKGK 313
           +G G+ K  E + ST K K
Sbjct: 231 AGFGKFKFKESLGSTSKNK 249


>gi|433446185|ref|ZP_20410244.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
 gi|432000481|gb|ELK21375.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
          Length = 257

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SIT 158
           +DFLTP   +     +    DV     GG    ER R  +  P    ++ D   +L SI 
Sbjct: 34  TDFLTPREQQIVRSIVGHHDDVHVAFFGGSSSVERKRALLYPPYMQPNEEDFQLSLFSIR 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H D LG++L  G+ REK GDII+  +   QF+V  E+A ++  ++  +G  
Sbjct: 94  YPKKFVTLGHRDVLGALLSLGVKREKFGDIIIVDD-VIQFVVAKEIAPFVQMNVTTIGKA 152

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
            VS     L  L     + +      +SLR+DA+ +  F++SR K   LI    V+VNW 
Sbjct: 153 KVSLEEQLLSQLLVVEEQWEEETFTVSSLRLDAILAQCFRISRQKAQALIDQNFVKVNWK 212

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
           TV +     + GD++S+ G GR ++  I   T+K K+ +
Sbjct: 213 TVDQAHMECQEGDLLSLRGYGRCRLQAIVGQTKKEKWRI 251


>gi|299535882|ref|ZP_07049202.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
 gi|424738822|ref|ZP_18167251.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
 gi|298728634|gb|EFI69189.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
 gi|422947306|gb|EKU41703.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
          Length = 262

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV- 139
           ++ ++   R    R     +DFL P         + +   +K    G + +AER R+ + 
Sbjct: 16  IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQNDTLKTACTGLFEEAERQRMLIF 75

Query: 140 -GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             + EA+  D  +VA  +I     F    H D LG++L  G+ R K GDI +  ++  QF
Sbjct: 76  PTYYEAIEEDFQLVA-FTIQYPVKFVQLRHPDVLGALLSLGLNRGKFGDIRV-NDQQVQF 133

Query: 199 LVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V  E+A+Y+   L  +G V V   S      L +  E    +S     +S+R+D + + 
Sbjct: 134 VVAQEVAEYVRLHLTGIGKVKVHIESLKEADSLIVNEEEWLEESHTV--SSMRLDVIIAT 191

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
              +SR K   LI+   VRVNWT        L+ GDI+S+ G GR+KI
Sbjct: 192 VLNVSRQKAQALITGKKVRVNWTERDTVAFELQEGDILSIRGSGRVKI 239


>gi|365903048|ref|ZP_09440871.1| cell division protein [Lactobacillus malefermentans KCTC 3548]
          Length = 260

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 97/204 (47%), Gaps = 9/204 (4%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILG 177
           +VK    GGYP AE  R+ + +PE       D  V    I     F    H   LG++  
Sbjct: 56  NVKMQPYGGYPGAELNRVLI-YPEYFEPKKTDFEVTLFEIIYPTKFADLHHSQVLGTLAN 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            G+ RE IGDII  GE+  QF V   +  Y    ++++G + V  T  P    E   P  
Sbjct: 115 IGVDREVIGDIITDGERW-QFFVETGITSYFENQVDQIGKIKVHLT--PKENSEAVEPLN 171

Query: 238 KSFK--TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           +  +     +S+R+D++ +  F LSR +   L+  G VRVNW    K    L   DIVS+
Sbjct: 172 EWEEEGATLSSIRLDSIVATAFHLSRHRSKALVEAGKVRVNWAESNKPDYELAIADIVSI 231

Query: 296 SGKGRIKIGEIN-STRKGKFAVEL 318
            G GRIK+  ++  T+K K  V L
Sbjct: 232 RGFGRIKLISLDGQTKKEKTRVTL 255


>gi|125624828|ref|YP_001033311.1| hypothetical protein llmg_2056 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493636|emb|CAL98623.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 239

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAAL 155
           V+ + FL P  + E +  L    +V+  +     Q E  ++ +  +   L  D   +A L
Sbjct: 10  VISTFFLNPREV-EILKTLANKREVQVFSSAELAQTELVKIILAPNFYVLDKDDFDIALL 68

Query: 156 SITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            I+    F   SH   LG+ LG  G+ R+++GDII+   K  Q  V   L +    S++K
Sbjct: 69  EISYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDRK-IQIFVSKHLVESF-KSIDK 126

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           +G  +V    I L  L     R      +   LR+D + +  FK+SR+   N++ +  V+
Sbjct: 127 IGRAAVKIDEISLTDLAQNTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVK 186

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 318
           +N+  + K   ++  GD++SV G GRIKI   +  T+KGK  VE+
Sbjct: 187 INYQEIDKKDFSVGAGDLISVRGFGRIKILSLLGLTKKGKQRVEI 231


>gi|163814735|ref|ZP_02206124.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
 gi|158450370|gb|EDP27365.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
          Length = 301

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 14/249 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           ++A  A ++    +++FL+   +      +++L+ V     GG    ER  ++ G+    
Sbjct: 55  DLANAAYTQNRYTYTNFLSAADIDVFYSNMDELSFVGYKLFGGREGCERVMIAFGNESDC 114

Query: 146 TSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-----QGEKGA 196
             +P     IV A ++   F  +  +H DFLG+++  GI RE IGDI++      G+  A
Sbjct: 115 GYEPTFPIAIVKAAAVQDKFS-EDLNHRDFLGALMNLGIEREMIGDILVAESSKTGKHSA 173

Query: 197 QFLVVPE-LADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALAS 254
            ++   E +ADY++ SL ++ + ++ C+   P    E +  + K    I AS R DA+ +
Sbjct: 174 AYIFCAESIADYIVESLTRIRHTNMRCSICSPEDTGEIQLQK-KPMHIIAASARADAVTA 232

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 313
               LSRS    L       +N      +   L++GDI S+ G G+ +  E  + TRKG+
Sbjct: 233 TITGLSRSNTSLLFREKKFTLNNRLYENSSYQLKSGDIFSIRGYGKYEFVESGTVTRKGR 292

Query: 314 FAVELIQYL 322
             +EL++Y+
Sbjct: 293 LNIELLKYV 301


>gi|404408464|ref|YP_006691179.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
           SLCC2376]
 gi|404242613|emb|CBY64013.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2376]
          Length = 259

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  ++   I
Sbjct: 36  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEISLFHI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 95  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 154 VNVMLEETDLANAIYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 213

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 214 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 255


>gi|167630162|ref|YP_001680661.1| hypothetical protein HM1_2093 [Heliobacterium modesticaldum Ice1]
 gi|167592902|gb|ABZ84650.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 263

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 5/232 (2%)

Query: 90  RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 149
           R + R++V  +DFL P + K +   L     V  VA GGY  AER RL +   E    D 
Sbjct: 32  RRTHRQQV--TDFLEPYLRKAAQELLRGPGGVLCVADGGYEGAERQRLVLLPDEEDRPDS 89

Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 209
            I   L+     G +   H D+LG++LG GI REK+GD+  + E+G   ++  ++A Y+ 
Sbjct: 90  RICWVLAEPVRKG-ERIGHRDYLGALLGLGIRREKVGDL-KRTERGCAVVLDCDVARYVE 147

Query: 210 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 269
               +V   +++   I    +       +      ASLR+DAL +A + LSRS+   +I 
Sbjct: 148 AQWRQVRQSALTVRVIDDGTVHAFIDEGEERTITVASLRLDALIAAIWHLSRSRADEVIG 207

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQ 320
            G ++VN   +T    +   GDI+S+ G GR  +  +   TRKG+  + + Q
Sbjct: 208 RGLLKVNGLEMTDGSKSADEGDILSLRGFGRAILRAVGGETRKGRIRLTVWQ 259


>gi|328957133|ref|YP_004374519.1| cell shape determination protein [Carnobacterium sp. 17-4]
 gi|328673457|gb|AEB29503.1| factor involved in shape determination, RNA-binding fold protein
           [Carnobacterium sp. 17-4]
          Length = 260

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 19/229 (8%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           ++FL P  L      + K +++   + GGY  AER R  +  P   T   D   +    I
Sbjct: 36  TNFLDPRQLHIVKTIVGKNSEITIHSFGGYEAAERVRAFIC-PSYFTPKQDDFGITICEI 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   SHG  LG++L TG+ R+  GDII  G +  Q  V      Y+   +  +G 
Sbjct: 95  RYPIKFASLSHGKVLGTLLSTGLKRDYFGDIISDGTR-WQVFVENTTKSYVEQQVISIGK 153

Query: 218 VSVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           V+V           +P+     E           +S+R+D L S+ FK+SR +   +I +
Sbjct: 154 VAVRMEERDYTDILVPIDNWTIESQTV-------SSMRLDTLVSSVFKISRQRAKQMIES 206

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           G V++NW   T+    +   DIVSV G GR+++ EI   T+K K+ ++L
Sbjct: 207 GKVKLNWVESTRPDFEIGLLDIVSVRGYGRLQVQEIEGKTKKDKWRLQL 255


>gi|339441072|ref|YP_004707077.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
 gi|338900473|dbj|BAK45975.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
          Length = 252

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 14/249 (5%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K I ++A R+      + +DFLT     E +   ++LA V     GG    ER  L  G 
Sbjct: 10  KRIRDLADRSCRENRYVFTDFLTLEEQSEVLNMKQELAYVDFALYGGTEACERKMLRFGS 69

Query: 142 PEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
              L    +  +  L I      F   P  H DFLG+++  GI R+ +GDI ++ EK A 
Sbjct: 70  EAQLGYSVEFPICCLRIEPRMKKFA-DPLIHRDFLGALMHLGIRRDVLGDIFVR-EKCAW 127

Query: 198 FLVVPELADYLITSLEKVGNVSVSC---TRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
                +++ ++  +L KV +  V C     IP    E   P  +  + I AS R D L +
Sbjct: 128 LFCEEQMSSFIRDNLIKVRHTYVQCRESAEIP----EEAAPVLQPQELIVASTRADVLVA 183

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGK 313
              +LSRS+ V L     + +N      N   L+ GD++S+ G G+ I  GE   TRKG 
Sbjct: 184 KICRLSRSQSVELFREKKIFINGYLYENNSGMLKPGDVISIRGFGKLIYDGEKAVTRKGS 243

Query: 314 FAVELIQYL 322
             + + +Y+
Sbjct: 244 HRIAVRRYI 252


>gi|116873458|ref|YP_850239.1| S4 domain-containing protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742336|emb|CAK21460.1| S4 domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 258

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  +A   I
Sbjct: 35  TDFLDPRQRYITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  G+I L  +   Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGNI-LNNDNEWQLLVESSMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLTNAVYAPVVWEEVGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRMEI 254


>gi|290892174|ref|ZP_06555170.1| S4 domain-containing protein [Listeria monocytogenes FSL J2-071]
 gi|290558297|gb|EFD91815.1| S4 domain-containing protein [Listeria monocytogenes FSL J2-071]
          Length = 258

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
           +DFL P     +   +    ++     GG   AER R  + +P+  T ++ D  ++   I
Sbjct: 35  TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEISLFHI 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F   +H   LG+++  G+ R+  GDI+  G +  Q LV   + DYL   LEK+G 
Sbjct: 94  RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           V+V      L    Y P   +      +S+R+D + S    +SR K   L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAIYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            TV          D++S  G GR+K+      T+K K  +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254


>gi|373451744|ref|ZP_09543663.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
 gi|371967965|gb|EHO85432.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
          Length = 251

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSV 139
           VK I ++      RR ++ + F  P    E  +    L   +     GGY  AERCR ++
Sbjct: 15  VKRIYDLIDLMERRRRIVVTPFFAPD---ECNICDAILGHQIPYGKSGGYQGAERCRYAL 71

Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
              E   +D  I   L  T +  F   +H D LG+IL  GI REKIGD+I++  +   F 
Sbjct: 72  LPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIGDLIVKDNELIIF- 129

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V  E+ +Y++ +L ++   +V   R     + YEP      K + +SLR+D L S+   +
Sbjct: 130 VDEEIENYIVCNLTRIKRSNVHFKRYEG-EVTYEPKIRYEHKIV-SSLRLDVLVSSFANI 187

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           SR K   LI  G V+VN   + +          +S+ G GR    EI  T K
Sbjct: 188 SRKKAQELIRAGLVKVNHVILEETSYLCNNNSAISIRGHGRFYFKEIVKTTK 239


>gi|164686337|ref|ZP_02210367.1| hypothetical protein CLOBAR_02775 [Clostridium bartlettii DSM
           16795]
 gi|164601939|gb|EDQ95404.1| S4 domain protein [Clostridium bartlettii DSM 16795]
          Length = 179

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +  + I GNF F+  SH D+LG++L  GI REKIGDII+  +   Q +V  ++ D++I +
Sbjct: 10  LKVIQIEGNFKFKSISHRDYLGALLNLGIKREKIGDIIIH-DNFCQVVVSEDICDFIIIN 68

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           LEKV    V    I +  +       K      +SLR+D++    + LSRS+ + LI   
Sbjct: 69  LEKVSKNKVKVKEITVKDIIESEQNFKEISFTVSSLRLDSVIGGVYNLSRSESLKLIKGE 128

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGR--IKIGEINSTRKG 312
            V V++  +      ++T  ++SV G GR  I+IG++  T+KG
Sbjct: 129 KVHVDYEKIISPSKEIKTNSLISVRGHGRAIIEIGDM--TKKG 169


>gi|187934764|ref|YP_001886623.1| S4 domain-containing protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187722917|gb|ACD24138.1| S4 domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 254

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 19/245 (7%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K+IL + +  S    V  + F +P + K      E  +  K   +G +   ER  +S  +
Sbjct: 23  KYILAVDKDIS----VFGNYFYSPKIWKWFKENCE-TSKFKVTCEGIFKNCERKMISFNN 77

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
              +   P  +  L + G   F    H DFLG IL  GI R KIGD+I+  E    +L +
Sbjct: 78  ---IYDSPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIV--EDNVCYLPI 132

Query: 202 PE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGF 257
            E +A +L+++++K+G    S T I     E + P  K FK    + +SLR+D + S   
Sbjct: 133 HEDIAKFLLSNVDKIGKTPCSITEI---QNEGDFPEIK-FKEDIILISSLRIDGIVSKIS 188

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 316
           KLSR+K   LI  G V +++  V      ++  + + + G G+  IGE I S++ GK+ +
Sbjct: 189 KLSRAKAQMLIDQGQVLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGSSKSGKYKL 248

Query: 317 ELIQY 321
            + +Y
Sbjct: 249 IIKKY 253


>gi|399888859|ref|ZP_10774736.1| RNA binding protein [Clostridium arbusti SL206]
          Length = 256

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 10/251 (3%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           DK A+  +   + +A  A   + V  ++F TP +  + +  L  L  ++    G +  +E
Sbjct: 14  DKLALSNIFDKINLA--AKIEKPVYTNEFYTPDICND-ISKLSDLLGLQISIYGIFENSE 70

Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           R  + +   E +++ P  +  + I     F    H D++G+I+  GI R K GD+I+  E
Sbjct: 71  R-NMLLFSKEKVSNFP--INLIKIENKSKFTDLGHRDYMGAIMSLGINRNKFGDLIV--E 125

Query: 194 KGAQFLVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
               F+ V E ++ Y+I +L  +G  S S +++ L          + F  I +SLR+D L
Sbjct: 126 NNCCFVAVCEDISSYIIDNLTSIGKCSCSISQLELTEDNIPSVNFQEFTIIVSSLRLDCL 185

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRK 311
             +   +SRSK V+LI  G V +N++   +  + +  G  +++ G G+ KI  +I  T K
Sbjct: 186 IGSVCNISRSKAVDLIKKGSVLLNYSIAKEKDSYVPFGTTITIRGHGKYKIASDIGVTGK 245

Query: 312 GKFAVELIQYL 322
            +  + + +++
Sbjct: 246 NRMKIRMKKFV 256


>gi|55820805|ref|YP_139247.1| hypothetical protein stu0739 [Streptococcus thermophilus LMG 18311]
 gi|418027555|ref|ZP_12666188.1| RNA binding protein [Streptococcus thermophilus CNCM I-1630]
 gi|55736790|gb|AAV60432.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|354691639|gb|EHE91557.1| RNA binding protein [Streptococcus thermophilus CNCM I-1630]
          Length = 266

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 38  TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 96  SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K SRS  + LI++G +++
Sbjct: 156 RVSVTLREVSKDEWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259


>gi|323691967|ref|ZP_08106216.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
           WAL-14673]
 gi|355628022|ref|ZP_09049551.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
 gi|323503976|gb|EGB19789.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
           WAL-14673]
 gi|354819990|gb|EHF04421.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
          Length = 251

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 117/255 (45%), Gaps = 12/255 (4%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQ 131
           DK+     K I E+A     R    ++DFLT     +  SM     L  V  +  GGY  
Sbjct: 3   DKDEQLLKKRISELAALCYQRDIRSYTDFLTLNEQTIFHSMK--RTLPPVTWLMGGGYET 60

Query: 132 AER---CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
           AER   C L     E       I+ A+  +  F  +  +H DFLG+I+  GI+R  IGDI
Sbjct: 61  AERKIVCFLPSYEDETADLPISILEAVPASPRFA-EALTHRDFLGAIMNLGISRSCIGDI 119

Query: 189 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 248
           ++  E G     + ++A +LI  L+ V +  VSC              T S     AS R
Sbjct: 120 LMN-ENGCFIFCLEKMAPFLIQELKMVRHTQVSCRPATQAPAAAPNCETVSGSV--ASPR 176

Query: 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEIN 307
           +D++ S  FK SRSK +  I    V ++       G  L+ G+I+SV G G+ +  G  N
Sbjct: 177 LDSVISLVFKTSRSKTLPFIEGERVFIDGRLCISPGRQLKEGEIISVRGLGKFRYTGAGN 236

Query: 308 STRKGKFAVELIQYL 322
            T+KG+  V   +Y+
Sbjct: 237 QTKKGRLFVNAEKYI 251


>gi|317472791|ref|ZP_07932102.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899710|gb|EFV21713.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 250

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 18/250 (7%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCR 136
           K + E+A+ A      ++S +   P L E   +L     ++L+   A   GG+   +RC 
Sbjct: 8   KRLEELAQTA-----FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCI 62

Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIIL-QG 192
           +  G  E    + +I +A   I+  F    +  +H D+LG+++  GI R +IGDI++  G
Sbjct: 63  VVFGSKEMFGYEGEIPLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDG 122

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           E  A       +A +L   L KV N  V    +    + Y    +       +S R+DAL
Sbjct: 123 E--AYVFCFRHMAGFLCRELTKVRNTQVETVGVDFKEIHYRQEYSTK-DGFVSSPRLDAL 179

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
               F LSRSK ++L  +  V +     T+N    +  D++SV G G+ +  E+   T+K
Sbjct: 180 VGLAFGLSRSKALSLFQSQKVFIRGKMETRNSYQAKPEDVISVRGFGKFRFQELGRETKK 239

Query: 312 GKFAVELIQY 321
           G+F V+L  Y
Sbjct: 240 GRFHVKLQIY 249


>gi|238916862|ref|YP_002930379.1| hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
 gi|238872222|gb|ACR71932.1| Hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
          Length = 251

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 10/245 (4%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEK--LADVKAVAQGGYPQAERCRLSVGH 141
           I++ A R+  +    +++FL   + ++S+ A  K  L  V     GG    ER  +  G 
Sbjct: 11  IMDAANRSFRQNIYTYTNFL--DINEQSVFAQMKNPLNFVAFKTYGGNDACERQMIQFGS 68

Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
            E L  +   P  +  +S       +  SH D+LG+++  GI RE +GDI ++G K A  
Sbjct: 69  FETLGYEEEFPITLIKISPLIEKYAESLSHRDYLGALMNLGIKREMLGDINIKG-KDAYL 127

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
             V  +AD++I +L  V +  + CT+  +  +E   P  +  + + AS R+DA  ++  K
Sbjct: 128 YCVSHIADFIIDNLSTVKHTHIQCTKTDINDIEC-SPELEDIEVLSASERIDAAVASLTK 186

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVE 317
           LSRS+ V L     + +N   +  N   L+  DI+ + G G+ I  G    T+KG+  + 
Sbjct: 187 LSRSQAVELFRARKIFINSRQMENNSYQLKANDILVIRGTGKFIYQGCGRETKKGRVYLS 246

Query: 318 LIQYL 322
             +Y+
Sbjct: 247 FKKYV 251


>gi|387783869|ref|YP_006069952.1| cell division protein, contains S4-like domain [Streptococcus
           salivarius JIM8777]
 gi|338744751|emb|CCB95117.1| cell division protein, contains S4-like domain [Streptococcus
           salivarius JIM8777]
          Length = 267

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
           +DFL P      +  +E+LA    +       P++E     +  PE     D D  +  L
Sbjct: 38  TDFLNP----REIQIVEELAHYYNLKFFVSSTPESEEYGRVILAPEYYELDDEDFEIKRL 93

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            I+    F   +H   LG+++   G+ R+  GDIIL  E   QF +   LA Y I ++ K
Sbjct: 94  EISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTITK 153

Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +GNVSV+   +     +  +   ++SF  + +S+R+D + +    LSRS  + LI++G V
Sbjct: 154 IGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLIASGKV 212

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           ++N+  + K   T+  GD++SV G GR ++ +    + + K K  +E
Sbjct: 213 KLNYRQIEKANQTVMIGDMISVRGYGRFRLAQQDGFSKSGKAKIVIE 259


>gi|257439837|ref|ZP_05615592.1| putative S4 domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257197746|gb|EEU96030.1| S4 domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 273

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 8/248 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRL 137
           ++H+ ++AR A  R    +S FL+      +  AL + ADV       +GG+P AER  L
Sbjct: 27  MRHVEDLARAAEGRGIARYSGFLSDREQDLARAALNR-ADVPESDHHFEGGWPGAERKLL 85

Query: 138 SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GA 196
            +       + P     L+     G    SH D+LGS++G  + RE +GDI+L  +  G 
Sbjct: 86  CLEPEGCYPASPLCCVKLTCRTLSGAALPSHKDYLGSLMGLELRREALGDIVLPADTPGT 145

Query: 197 QFLVVPELADYLIT-SLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFKTIEASLRVDALAS 254
            ++   E A  LI   L +VG   V+ T + L  + E+     K+     +SLR+DA+ +
Sbjct: 146 AYVFALETAGELICRELLQVGRTEVTATLLSLDEVPEFPQAERKTQTATVSSLRLDAVLA 205

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
           A    SR +    I+ G V +N          +  GD+ +V GKGR  +  +   ++K +
Sbjct: 206 AMLHCSRGQACEWIAAGRVEINHLPAESAHAPVYEGDVFTVRGKGRFGLTALPGKSKKDR 265

Query: 314 FAVELIQY 321
             +E  QY
Sbjct: 266 SIIEFFQY 273


>gi|422871407|ref|ZP_16917900.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1087]
 gi|328945575|gb|EGG39726.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1087]
          Length = 261

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 112/249 (44%), Gaps = 13/249 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           E +   LE+ +R         + FL P    +LK     + K  DV+  A  GY  +E  
Sbjct: 15  EFIDRSLELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSGYYPSELA 70

Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
           R+ V      L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G+
Sbjct: 71  RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGD 130

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
           + AQ  V   LA Y I  + KV  + V    +       E  +  + + + +SLR+D L 
Sbjct: 131 R-AQLFVDKRLAQYFIDHVTKVAKMPVRLKEVSFAEQLKEQKQAVTREILASSLRLDKLV 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG- 312
           ++ FKLSRS+   LIS   V++N+         +   D++SV   GR K+   N   K  
Sbjct: 190 ASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNG 249

Query: 313 --KFAVELI 319
             K  VEL+
Sbjct: 250 KHKLTVELL 258


>gi|228476829|ref|ZP_04061474.1| RNA binding protein [Streptococcus salivarius SK126]
 gi|228251403|gb|EEK10548.1| RNA binding protein [Streptococcus salivarius SK126]
          Length = 267

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
           +DFL P      +  +E+LA    +       P++E     +  PE     D D  +  L
Sbjct: 38  TDFLNP----REIQIVEELAHYYNLKFFVSSTPESEEYGRVILAPEYYELDDEDFEIKRL 93

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            I+    F   +H   LG+++   G+ R+  GDIIL  E   QF +   LA Y I ++ K
Sbjct: 94  EISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTITK 153

Query: 215 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +GNVSV+   +     +  +   ++SF  + +S+R+D + +    LSRS  + LI++G V
Sbjct: 154 IGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLIASGKV 212

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           ++N+  + K   T+  GD++SV G GR ++ +    + + K K  +E
Sbjct: 213 KLNYRQIEKANQTVMIGDMISVRGYGRFRLAQRDGFSKSGKAKIVIE 259


>gi|408790502|ref|ZP_11202121.1| hypothetical protein B807_953 [Lactobacillus florum 2F]
 gi|408520226|gb|EKK20314.1| hypothetical protein B807_953 [Lactobacillus florum 2F]
          Length = 263

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 9/197 (4%)

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
           GG+  AE  R  +  P+      SD ++   ++I     F    H   LG++LGTG+ RE
Sbjct: 65  GGFADAEMQR-GLVFPDYFVPQLSDFEL-QLMAIDYPMRFATIKHYQILGALLGTGVKRE 122

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKT 242
            +GD+I   +K  QF     L  YL ++L K+G+ +VS   + + + L  E       +T
Sbjct: 123 VLGDVIT-NQKHWQFYCEATLVKYLQSNLTKIGSTTVSVLPVSMSSQLLPEDDSVLVHQT 181

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
           ++ SLR+D + +A F +SR    +L+ +G VR+NW T  +    L   D+VSV G+GR  
Sbjct: 182 LQ-SLRIDNVIAAAFHISRQAANDLVRHGQVRLNWFTEERPAEWLTVQDLVSVRGQGRFV 240

Query: 303 IG-EINSTRKGKFAVEL 318
           +  E   ++KGK    L
Sbjct: 241 LQTEDGFSKKGKIKATL 257


>gi|445375291|ref|ZP_21426482.1| hypothetical protein IQ5_03686 [Streptococcus thermophilus MTCC
           5460]
 gi|444750373|gb|ELW75191.1| hypothetical protein IQ5_03686 [Streptococcus thermophilus MTCC
           5460]
          Length = 266

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 38  TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 96  SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K SRS  + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259


>gi|418576429|ref|ZP_13140575.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
           subsp. saprophyticus KACC 16562]
 gi|379325491|gb|EHY92623.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
           subsp. saprophyticus KACC 16562]
          Length = 259

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 112/245 (45%), Gaps = 7/245 (2%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
           K   E +  +++   RA+ +   + + FL P       +      D++    GG P AER
Sbjct: 12  KEEHELIDQLIDKCNRANDQYSPILTPFLDPRGQYIMNVVAGSFEDLEVTFYGG-PFAER 70

Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
            R  +  P     D +    + I  ++   F    H   LG+I+  GI R+++GDI++  
Sbjct: 71  KRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTIMSLGIERDQLGDIVV-- 127

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           +   QF +  +L  Y+I  L K+   SV    IP+  +       +SF+T  + LR+D +
Sbjct: 128 DDRIQFTLTKQLESYIILELTKIKGASVKLNSIPIKDMIQSKEHWQSFETTVSGLRLDVV 187

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
                + SRS    LI    V+VN T +      L +GD++S+ G GR  I +I   T+K
Sbjct: 188 LKEMVRKSRSIAKQLIDKKRVKVNHTVIDAADFQLDSGDLLSIQGFGRAMITDIGGKTKK 247

Query: 312 GKFAV 316
            K  +
Sbjct: 248 DKIRI 252


>gi|345021943|ref|ZP_08785556.1| hypothetical protein OTW25_11484 [Ornithinibacillus scapharcae
           TW25]
          Length = 249

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 127 GGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           GG   +ER R  +  + E +T++   ++ +  + +  F   +H D LG+ L  GI+R+K+
Sbjct: 62  GGGSHSERKRAIIAPYYEEITNNTFNISLIQASYHEKFITIAHRDVLGAFLSLGISRKKL 121

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GD+   G+   Q L+  ++A Y+  +L  +   +++   +    L  +       + I +
Sbjct: 122 GDL-YAGDGKIQILLDKDIASYVQMNLTGIKRATITFEEVSFDKLIEQKSVWNESEKIVS 180

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+D +    + LSR +  +LI  G V+VN+  V      LR GD++S+ GKGR K+ E
Sbjct: 181 SLRLDTILKEIYNLSRKQAQDLIQKGMVKVNYRLVEDGKFILREGDLISLRGKGRSKLVE 240

Query: 306 INSTRKGK 313
           +N   K K
Sbjct: 241 VNGQTKKK 248


>gi|402839267|ref|ZP_10887760.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
           OBRC8]
 gi|402270806|gb|EJU20064.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
           OBRC8]
          Length = 261

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 96  EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
           ++  +DF+ P   +  +  L   + ++   A GG   +ER ++ + +P+ +      V  
Sbjct: 35  DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
           L + GNF F+  SH D LG+++  GI REKIGDI +   K    +V+ E + +Y+I+++ 
Sbjct: 94  LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
            + + S+    +P+  L              +SLR+D + +  F LSR+  +++I +  V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRIDNIIAEAFNLSRASAISVIKSERV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           +VN+  V      +    ++SV G GR      N  ++KGK  + L  Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260


>gi|387909514|ref|YP_006339820.1| cell division protein [Streptococcus thermophilus MN-ZLW-002]
 gi|387574449|gb|AFJ83155.1| cell division protein [Streptococcus thermophilus MN-ZLW-002]
          Length = 266

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 38  TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 96  SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K SRS  + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259


>gi|339451076|ref|ZP_08654446.1| S4 domain-containing protein [Leuconostoc lactis KCTC 3528]
          Length = 263

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           +  R++      + + FL P         + +  D+ +   GG   AE  R  +  P   
Sbjct: 25  DWIRQSEDEYRTILTPFLNPREQYILTTLVNRADDLTSHFDGGVSGAESQRAIIA-PAVY 83

Query: 146 TSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
             D     +A L I     F    H   LG+++  GI R  +GDI+ Q ++  Q +V  +
Sbjct: 84  EIDQTAFELAVLEINYPTKFTELHHAAILGALMHAGIKRAVVGDILGQDQRW-QIIVDSK 142

Query: 204 LADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
           +  Y+  ++  +G V ++ T +PL  A+  +    ++F T+  SLR+DA+ +A F +SRS
Sbjct: 143 MLTYIQQTVTMIGRVKITWTVLPLTQAITAQDDWEETF-TLLPSLRLDAVIAATFDISRS 201

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
               LI+   VR+NW T  K   T+  GD++SV   GR+K+  ++   K
Sbjct: 202 LAKTLITQQQVRLNWVTQAKPDHTVEVGDLISVRKYGRVKLAILDGYSK 250


>gi|336395776|ref|ZP_08577175.1| S4 domain-containing protein [Lactobacillus farciminis KCTC 3681]
          Length = 264

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 10/212 (4%)

Query: 100 SDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
           +DFL    L+E  +    + K  D+     GG+  AER R  V     +  D D  +A  
Sbjct: 40  TDFLN---LREQTILNNLINKYDDLYVHYFGGFGNAERVRGIVAPDYFVPQDSDFGIAMY 96

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            I     F    HG  LGS+ G+G+ R++ GDII  GE   QF V   +++Y+   ++K+
Sbjct: 97  EIRYPEKFANLHHGQILGSLTGSGVERDRFGDIITDGE-NWQFFVFDSMSEYIEEQVKKI 155

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
               +   +     +      +     +  SLR+D++ S  + LSR     L+ +G V++
Sbjct: 156 DPYKIHLIKKDFSEVLLPKDESVDETVLVQSLRLDSIISTVYDLSRQNSKALVDHGKVQI 215

Query: 276 NWTTVTKNGTT-LRTGDIVSVSGKGRIKIGEI 306
           NW  V KN +  +   D +SV G GRI+I +I
Sbjct: 216 NW-VVNKNASAFIAITDTLSVRGFGRIRINDI 246


>gi|160894535|ref|ZP_02075311.1| hypothetical protein CLOL250_02087 [Clostridium sp. L2-50]
 gi|156863846|gb|EDO57277.1| S4 domain protein [Clostridium sp. L2-50]
          Length = 259

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 113/251 (45%), Gaps = 12/251 (4%)

Query: 83  HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
           H+ ++A +A  +     ++FL+   L      L  ++ +     GG    +R  +  G  
Sbjct: 10  HLNDLANKAYQKNIYTFTNFLSASDLDIFYSMLPDISHIPYEIFGGRDGCDRVMIRFGSE 69

Query: 143 EALTSD-PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG------ 192
           +    D P  +  L IT     F     SH D LGS++  GI RE  GDII++       
Sbjct: 70  DTTGYDLPFPITILQITPLMDKFS-DELSHRDVLGSLMNLGIEREMTGDIIMKASSRSGI 128

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
              A    V  +ADY+  +L ++ + SV C   P   L       +  + I AS R+DA+
Sbjct: 129 RNTAYVFCVSSIADYISENLTRIKHTSVRCIPCPDSDLPDITSTLEECQCIAASERIDAV 188

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRK 311
            +A  KLSRS+ V L     V +N   +  N  TL+  D  S+ G G+ I  G    TRK
Sbjct: 189 IAAVTKLSRSQTVILFREKKVFLNNRVLENNSYTLKPDDTFSIRGYGKFIYKGCGKETRK 248

Query: 312 GKFAVELIQYL 322
           G+  + L +Y+
Sbjct: 249 GRIYITLERYV 259


>gi|116627609|ref|YP_820228.1| cell division protein [Streptococcus thermophilus LMD-9]
 gi|386086417|ref|YP_006002291.1| Cell division protein, contains S4-like domain [Streptococcus
           thermophilus ND03]
 gi|116100886|gb|ABJ66032.1| Cell division protein, contains S4-like domain [Streptococcus
           thermophilus LMD-9]
 gi|312278130|gb|ADQ62787.1| Cell division protein, contains S4-like domain [Streptococcus
           thermophilus ND03]
          Length = 266

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 38  TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 96  SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K SRS  + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259


>gi|153953820|ref|YP_001394585.1| hypothetical protein CKL_1195 [Clostridium kluyveri DSM 555]
 gi|219854436|ref|YP_002471558.1| hypothetical protein CKR_1093 [Clostridium kluyveri NBRC 12016]
 gi|146346701|gb|EDK33237.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219568160|dbj|BAH06144.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 258

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 95  REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
           + +  S+F  PP L +++   +    +   + G +  AER  L     E L   P  V  
Sbjct: 33  KNIFTSEFY-PPNLWKTLEDFKGQVGINVYSHGIFENAERKILVFSQSEVLDY-P--VRL 88

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
           + I  +  F    H D+LG+++  GI R K GD+I++        V  +++DY+  +L  
Sbjct: 89  MKIKCSSKFVSLQHKDYLGALMALGIKRGKFGDLIVKENNECYAAVHEDISDYVYMNLSS 148

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           +G    + T +     E      K+F    +SLR+D L S+  ++SRSK   L+  G V 
Sbjct: 149 IGKCECNITFLDTNITEIPDYNFKTFDINTSSLRIDCLLSSMCRISRSKSEELMKQGKVL 208

Query: 275 VNWTTVTKNGTTLR-TGDIVSVSGKGRIK-IGEINSTRKG 312
           +++  VTK   T+  +G +++V G G+ K + ++  T++G
Sbjct: 209 LDYLPVTKKDKTINDSGCVITVRGYGKFKVVKKLGYTKRG 248


>gi|322372692|ref|ZP_08047228.1| YlmH protein [Streptococcus sp. C150]
 gi|321277734|gb|EFX54803.1| YlmH protein [Streptococcus sp. C150]
          Length = 267

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 11/212 (5%)

Query: 100 SDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
           +DFL P      +  +E LA+   +K          E  R+ +       SD D  +  L
Sbjct: 38  TDFLNP----REIQIVEDLANYYQLKFFVSSNLETEEYRRVIIAPDYYELSDDDFEIKRL 93

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            ++    F   +H   LG+++   G+ R+  GDII+  +   QF +   LA+Y I +++K
Sbjct: 94  EVSYARQFNTLTHPKVLGTLINQLGLERQVFGDIIINDDGRIQFSIASHLANYAIMTIKK 153

Query: 215 VGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +GNVSV+   +     +  +   + SF  + +S+R+D + +    LSRS+ + LIS+G V
Sbjct: 154 IGNVSVTLKDVSEGNWITNQENYSHSF-VLLSSMRLDNVLATVLNLSRSRALKLISSGKV 212

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           ++N+  V K    +  GD++SV G GR ++ E
Sbjct: 213 KLNYRQVEKADQLITIGDMISVRGFGRFRLAE 244


>gi|256842891|ref|ZP_05548379.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|262045857|ref|ZP_06018821.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|293381725|ref|ZP_06627706.1| S4 domain protein [Lactobacillus crispatus 214-1]
 gi|312977591|ref|ZP_07789338.1| cell-division protein [Lactobacillus crispatus CTV-05]
 gi|423317800|ref|ZP_17295697.1| hypothetical protein HMPREF9250_01405 [Lactobacillus crispatus
           FB049-03]
 gi|423321137|ref|ZP_17299009.1| hypothetical protein HMPREF9249_01009 [Lactobacillus crispatus
           FB077-07]
 gi|256614311|gb|EEU19512.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|260573816|gb|EEX30372.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|290921772|gb|EFD98793.1| S4 domain protein [Lactobacillus crispatus 214-1]
 gi|310895330|gb|EFQ44397.1| cell-division protein [Lactobacillus crispatus CTV-05]
 gi|405596460|gb|EKB69796.1| hypothetical protein HMPREF9249_01009 [Lactobacillus crispatus
           FB077-07]
 gi|405597736|gb|EKB70987.1| hypothetical protein HMPREF9250_01405 [Lactobacillus crispatus
           FB049-03]
          Length = 266

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      D      GGYP AE+ R+ +   E L   P    
Sbjct: 34  KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   +H   LG++  +GI     GDII   +   QF    E+ ++    
Sbjct: 91  IQPYEIEYPQKFTKINHSVILGTLANSGIDTSIFGDIINDNQGKWQFFTKKEMTEFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAGFKLSRSKLVNLIS 269
           ++++G   V     P+   E   P   S +   I AS+R+DA+ S   + SR ++  +I+
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTKIVASMRIDAVLSGISRQSRGQIQKMIN 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +  V++NW  +  +   ++  D++S+   GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHEIADSNIMIKEDDVLSLRHFGRILIEDVSTTRKGKYKVVL 257


>gi|421765864|ref|ZP_16202644.1| hypothetical protein C426_0211 [Lactococcus garvieae DCC43]
 gi|407625634|gb|EKF52329.1| hypothetical protein C426_0211 [Lactococcus garvieae DCC43]
          Length = 265

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)

Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 205
            D D+V  L I+    +    H   LGS LG TGI R +IGDI+L  E+ AQ  V   L 
Sbjct: 85  DDFDLVL-LEISYANKYYHLKHSQILGSFLGQTGIRRTEIGDIVLNDER-AQIFVSRHLL 142

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           +    ++EK+G+ +V     P   L      +     + +SLR+D + ++ F++SR+  V
Sbjct: 143 EIFQKNIEKIGSATVQFVEKPFTELIKTEATSIVKVVLVSSLRIDKIVASTFEISRNIAV 202

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVE 317
           N++ +  V++N+  + K    +  GD++SV G GRIKI   +  T+KGK  VE
Sbjct: 203 NMLQSRKVKLNYLEIDKKDFPVGQGDLISVRGLGRIKILRLLGETKKGKQKVE 255


>gi|56964109|ref|YP_175840.1| hypothetical protein ABC2344 [Bacillus clausii KSM-K16]
 gi|56910352|dbj|BAD64879.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 253

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           + HI  +  +A+   +   + FL P + + +   + +  ++     GG    ER R S+ 
Sbjct: 13  IDHIQTLREQATRYHQEKLTGFLDPRMQEVAKSVIGQDGEIDLQFFGGADGCERKRASI- 71

Query: 141 HPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
            P  L ++P   DI    +   N  F   +H D LG+++ TG+ RE  GDI +  +    
Sbjct: 72  RPAYLKNEPIDWDISLFKAAYAN-KFVTLTHRDVLGALMNTGMKRETFGDISVT-DNAFY 129

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
                E + Y+  +L++VG  +V+      L L  E    K      +SLR+DAL SA +
Sbjct: 130 VACTKEASAYIAIALKQVGKATVTLEETDTLELPDEKWEEKPVTV--SSLRLDALLSALY 187

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKF 314
            LSR+K  +LI  G V+VNW  V      +  GD +SV G GR K+  +   T+K K+
Sbjct: 188 GLSRAKAADLIGKGLVKVNWKVVEHPSFRVAIGDDLSVRGAGRAKVLKQEGVTKKDKY 245


>gi|225378090|ref|ZP_03755311.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
           16841]
 gi|225210091|gb|EEG92445.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
           16841]
          Length = 249

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K +++++R+A+ +  VL SDFL    L       EK  + K  A GG P AER ++    
Sbjct: 9   KKLIDLSRQANRKGIVLFSDFLNLNELNIYHQN-EKFFETKTEASGGVPFAER-QIVAFI 66

Query: 142 PEALTSDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           P+AL  +    +A L I  ++  F +   H D LGS++  G+ R K+GDI++  +K   F
Sbjct: 67  PDALYYEWQFPIAYLEIVPSYPKFAEKLGHRDILGSMMNLGVDRSKLGDIVICEDK--YF 124

Query: 199 LVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           L+  E +A Y + +L+K+ +  V  + +   AL  +  + +    I  S R+D++ +  +
Sbjct: 125 LICEESMAPYFMENLDKIRHTVVKLSPVSADALG-QQQKFEEKDGIITSNRLDSMIACVY 183

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAV 316
           K SRS+ +       V VN   V       +  DI+SV G GR     E+  T KG+  V
Sbjct: 184 KFSRSQALEFFKAEKVFVNGKCVQNPSYRCKEADIISVRGYGRFVFEREMGETNKGRMKV 243

Query: 317 ELIQY 321
               Y
Sbjct: 244 RYKLY 248


>gi|418018046|ref|ZP_12657602.1| putative cell division protein [Streptococcus salivarius M18]
 gi|345526895|gb|EGX30206.1| putative cell division protein [Streptococcus salivarius M18]
          Length = 267

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
           +DFL P      +  +E+LA   ++           E  R+ +  PE    D D   +  
Sbjct: 38  TDFLNP----REIQIVEELAHYYNLNFFVSSTLESEEYGRVILA-PEYYELDDDDFEIKR 92

Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I+    F   +H   LG+++   G+ R+  GDIIL  E   QF +   LA Y I ++ 
Sbjct: 93  LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTIT 152

Query: 214 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
           K+GNVSV+   +     +  +   ++SF  + +S+R+D + +    LSRS  + LI++G 
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATILNLSRSNALKLIASGK 211

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           V++N+  + K   T+  GD++SV G GR ++ +    + + K K  +E
Sbjct: 212 VKLNYRQIEKANQTVMIGDMISVRGYGRFRLAQQEGFSKSGKAKIVIE 259


>gi|363895505|ref|ZP_09322500.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
           ACC19a]
 gi|361957257|gb|EHL10567.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
           ACC19a]
          Length = 261

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 96  EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
           ++  +DF+ P   +  +  L   + ++   A GG   +ER ++ + +P+ +      +  
Sbjct: 35  DIRRTDFMNPYEQRLFISVLNAFSNEISCQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
           L + GNF F+  SH D LG+++  GI REKIGDI +   K    +V+ E + +Y+I+++ 
Sbjct: 94  LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
            + + S+    +P+  L              +SLR+D + +  F LSR+  +++I +  V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIKSERV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           +VN+  V      +    ++SV G GR      N  ++KGK  + L  Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260


>gi|58337123|ref|YP_193708.1| cell-division protein [Lactobacillus acidophilus NCFM]
 gi|227903698|ref|ZP_04021503.1| ribosomal protein S4e [Lactobacillus acidophilus ATCC 4796]
 gi|58254440|gb|AAV42677.1| cell-division protein [Lactobacillus acidophilus NCFM]
 gi|227868585|gb|EEJ76006.1| ribosomal protein S4e [Lactobacillus acidophilus ATCC 4796]
          Length = 266

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGY  AE+ R+ +   E +   PD   +    I     F   +H   LG++  +GI  + 
Sbjct: 65  GGYANAEKKRVYLSE-EWVNLRPDNYQIQPYEIEYPQKFVKITHSSILGTLANSGINTDA 123

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 244
            GDII       QF    EL D+    ++++G   V     P+       P   S +  E
Sbjct: 124 FGDIITDDNGTWQFFAKKELTDFFEEQVDRIGRTQVKLK--PISFKNVIVPEDDSIEKTE 181

Query: 245 --ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             AS+RVDA+ S   K SR ++  +I +  V++NW  +T +   ++  D++S+   GR+ 
Sbjct: 182 IIASMRVDAVLSGISKQSRGQIQKMIDSKLVKLNWHDITGSNIMVKEDDVLSLRHFGRVL 241

Query: 303 IGEINSTRKGKFAVEL 318
           I  +++TRKGK+ V L
Sbjct: 242 IENVSATRKGKYKVVL 257


>gi|445389778|ref|ZP_21428199.1| hypothetical protein IQ7_03749 [Streptococcus thermophilus MTCC
           5461]
 gi|444750266|gb|ELW75093.1| hypothetical protein IQ7_03749 [Streptococcus thermophilus MTCC
           5461]
          Length = 230

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 2   TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 60  SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 119

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K SRS  + LI++G +++
Sbjct: 120 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 178

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 179 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 223


>gi|312864867|ref|ZP_07725098.1| S4 domain protein [Streptococcus downei F0415]
 gi|311099994|gb|EFQ58207.1| S4 domain protein [Streptococcus downei F0415]
          Length = 261

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 7/236 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  + ++A+R         +DFL P  +K +   L ++  +       + + E  ++ + 
Sbjct: 18  IDKMTDLAKRVQDNYVYQVTDFLDPRQVKIAKSVLGQMG-LTYYLSTDFLKTEYAKIILA 76

Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQ 197
            P+   L  D   +A L I+ N  F   +H   +GS +   G+ R   GDIIL  +  AQ
Sbjct: 77  -PDYYELELDDFEIALLEISYNPKFNHLTHSQIMGSFINKLGLERSVFGDIIL-ADNRAQ 134

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
            LV   +  Y  +S+ K+G  +V  T++P   L       K    + +S+R+D + ++ F
Sbjct: 135 ILVKDSMVAYF-SSVNKIGRAAVKITKVPWSHLLESVNHAKEVDILVSSMRLDKVIASSF 193

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 313
           KLSRS    L+ +  V++N+  +T+    L  GD+VSV G GR ++   N   K K
Sbjct: 194 KLSRSLASKLVEHEKVKLNYGLLTRPAELLELGDLVSVRGYGRFEVFRDNGLSKNK 249


>gi|363889582|ref|ZP_09316942.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
           CM5]
 gi|361966649|gb|EHL19548.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
           CM5]
          Length = 261

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 96  EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
           ++  +DF+ P   +  +  L   + ++   A GG   +ER ++ + +P+ +      V  
Sbjct: 35  DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
           L + GNF F+  SH D LG+++  GI REKIGDI +   K    +V+ E + +Y+I+++ 
Sbjct: 94  LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
            + + S+    +P+  L              +SLR+D + +  F LSR+  +++I +  V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIKSERV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           +VN+  V      +    ++SV G GR      N  ++KGK  + L  Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260


>gi|55822706|ref|YP_141147.1| hypothetical protein str0739 [Streptococcus thermophilus CNRZ1066]
 gi|55738691|gb|AAV62332.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 266

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 38  TDFLNPREI-QIVKDLAIYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 96  SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K SRS  + LI++G +++
Sbjct: 156 RVSVTLREVSKDEWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259


>gi|188588620|ref|YP_001921580.1| S4 domain-containing protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498901|gb|ACD52037.1| S4 domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 254

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 15/230 (6%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V  +DF +P   K      E  ++ K   +G +  +ER  +S  +   +   P  +  L 
Sbjct: 34  VFGNDFYSPKTWKWFKENCE-TSEFKVTCEGIFKDSERKMISFNN---IYDIPFPIKLLK 89

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKV 215
           + G   F    H DFLG IL  GI R KIGD+I+  E    +L + E +  +L+++++K+
Sbjct: 90  VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIV--EDNVCYLPIHEDIFKFLLSNVDKI 147

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGD 272
           G    S   I     E + P+ K FK    + +SLR+D + S   KLSRSK   LI  G 
Sbjct: 148 GRTPCSIAEI---QNEGDFPKIK-FKEDVILISSLRIDGIVSKISKLSRSKAQMLIDQGQ 203

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 321
           V +++  +      ++  + + + G G+  +GE I S++ GK+ + + +Y
Sbjct: 204 VLIDYNKIKDKSYEVKVDERIVIRGIGKFIVGEVIGSSKSGKYKLIIKKY 253


>gi|205373286|ref|ZP_03226090.1| RNA-binding S4 domain-containing protein [Bacillus coahuilensis
           m4-4]
          Length = 257

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
           +DFL P   +     +   ++V    +G  P AER  C +   + +    D D+ A L +
Sbjct: 34  TDFLHPRERQIVEAIIGSQSEVLVSFEGLLPDAERKRCLIYPDYFQPKIEDFDL-ALLEV 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LG+++  GI REK GDI+L  ++  Q +   EL  Y+     +VG 
Sbjct: 93  EYPRKFITLEHRQILGALMSLGIRREKYGDILLSDDR-IQLIAANELKSYITLQFTEVGK 151

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
             +         +         ++T  +SLR+D + S   K+SR+K    I+   V+VNW
Sbjct: 152 SQIELIEKNRKEIIQPNEEWSEYQTTVSSLRLDVMLSTLLKISRNKAQAYITTNKVKVNW 211

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
               +       GD++SV GKGR+KI  ++  T++ K+ V
Sbjct: 212 REEDRVSFICEPGDMISVRGKGRLKIFSLDGQTKREKWKV 251


>gi|421452185|ref|ZP_15901546.1| RNA binding protein [Streptococcus salivarius K12]
 gi|400182616|gb|EJO16878.1| RNA binding protein [Streptococcus salivarius K12]
          Length = 267

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAA 154
           +DFL P      +  +E+LA   ++K          E  R+ +  P+   L  D   +  
Sbjct: 38  TDFLNP----REIQIVEELAHYYNLKFFVSSTLESEEYGRVILA-PDYYELEEDDFEIKR 92

Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I+    F   +H   LG+++   G+ R+  GDIIL  E   QF +   LA Y I ++ 
Sbjct: 93  LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFYIASHLASYAIMTIT 152

Query: 214 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
           K+GNVSV+   +     +  +   +K+F  + +S+R+D + S    LSRS  + LI++G 
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQEKYSKTF-VLLSSMRLDNVLSTVLNLSRSNALKLIASGK 211

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           V++N+  V K    +  GD++S+ G GR ++ +    + + K K  +E
Sbjct: 212 VKLNYRQVEKADQAVIIGDMISIRGYGRFRLAQQDGFSKSGKAKIVIE 259


>gi|169827025|ref|YP_001697183.1| hypothetical protein Bsph_1449 [Lysinibacillus sphaericus C3-41]
 gi|168991513|gb|ACA39053.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 262

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ ++   R    R     +DFL P         + +   +  +  G + +AER R+ + 
Sbjct: 16  IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQDDSMNTLCAGLFNEAERQRMLIY 75

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
                 ++ D  + A ++     F    H D LG++L  G+ R K GDI +  +   QF+
Sbjct: 76  PAYYEPTEKDFQLTAFTLQYPVKFVQLRHPDVLGALLSLGLNRSKFGDIRV-NDHQIQFV 134

Query: 200 VVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALASA 255
           V  E+A+Y+   L  +G V V    +    PLL  E E    +S+     S+R+D + + 
Sbjct: 135 VAQEVAEYVRLHLTGIGKVKVHVESLKEQEPLLINE-EEWLEESYTV--TSMRLDVIIAT 191

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
             K+SR K   LI+   VRVNWT        L+ GDI+S+ G GR+KI
Sbjct: 192 VLKVSRQKAQALITGKKVRVNWTERDAVAFELQEGDILSIRGSGRMKI 239


>gi|421187378|ref|ZP_15644738.1| cell division protein [Oenococcus oeni AWRIB419]
 gi|421193757|ref|ZP_15651003.1| cell division protein [Oenococcus oeni AWRIB553]
 gi|399969177|gb|EJO03600.1| cell division protein [Oenococcus oeni AWRIB419]
 gi|399971916|gb|EJO06155.1| cell division protein [Oenococcus oeni AWRIB553]
          Length = 256

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 7/203 (3%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
           FL P   K  ++ L K         GGY +AE  R  +G H E   +D  I + L +   
Sbjct: 38  FLNPQEQK-ILLELAKKTGFSVRFDGGYQKAENKRALIGDHKE---NDFQI-SLLQLNYA 92

Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 220
             +    H   LGS+L  GI+ ++IGD+I + +   Q L+   LAD+++ ++++  +  +
Sbjct: 93  SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151

Query: 221 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 280
           +  +IP   +       K  + + +S R+D L S  +  SR+   +LI +G V VNW   
Sbjct: 152 TFEKIPFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLIESGQVMVNWFEK 211

Query: 281 TKNGTTLRTGDIVSVSGKGRIKI 303
                  + GD+VS  G GRI++
Sbjct: 212 DNTSYLAKLGDVVSTHGYGRIRL 234


>gi|422821713|ref|ZP_16869906.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK353]
 gi|324990664|gb|EGC22600.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK353]
          Length = 261

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ GE+ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGER-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + K+  + V    +       E  +  + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|374673974|dbj|BAL51865.1| hypothetical protein lilo_1869 [Lactococcus lactis subsp. lactis
           IO-1]
          Length = 230

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 205
            D DI + L I     F   SH   LG+ LG  G+ R+++GDII+   K  Q  V   L 
Sbjct: 52  EDFDI-SLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 109

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           +    ++EK+G  +V    I L +L  E  +      +  +LRVD + +  FK+SR+   
Sbjct: 110 ESF-KAIEKIGRAAVKIQEISLESLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 168

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           N++ +  V+VN+  + K   ++   D++SV G GRIKI  I N T+KGK  VE+
Sbjct: 169 NMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILNFTKKGKQRVEI 222


>gi|424049918|ref|ZP_17787469.1| S4 domain-containing protein [Streptococcus agalactiae ZQ0910]
 gi|389648593|gb|EIM70092.1| S4 domain-containing protein [Streptococcus agalactiae ZQ0910]
          Length = 179

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ LV  ++ ++L+ 
Sbjct: 6   LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           S+ K+G  SV    +PL  L       +    I +SLR+D + +   K+SR++   LI  
Sbjct: 65  SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIEA 124

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVEL 318
             V+VN+ TV +    L  GD++SV G GR  +   +  T+  K+ +E+
Sbjct: 125 DKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 173


>gi|403069265|ref|ZP_10910597.1| hypothetical protein ONdio_06690 [Oceanobacillus sp. Ndiop]
          Length = 258

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 4/220 (1%)

Query: 100 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 157
           +DFL P   +   M+      ++K    GG   AER R+ +    E +T D   +  L  
Sbjct: 34  TDFLDPREQQIVEMLIGTSQEELKIYKHGGGHGAERKRMVIAPFYEVVTQDSCQLTLLEA 93

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
           +    F    H D +G+ +  G+ R+K+GDI   G+   Q ++  E+A Y+I +L  +  
Sbjct: 94  SYQDKFITIEHRDVMGAFMSLGVHRKKLGDI-FAGDGTIQIILAEEIAAYVIANLTSIKK 152

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            +V      L +++ +  +        +SLR+DA+    +KLSR      I    V+VN+
Sbjct: 153 ANVIFEERDLSSMQIKKEQWIETDKTVSSLRLDAVLKEIYKLSRKDAAAYIQKLQVKVNY 212

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             V  N   L+ GD++S+ GKGR K+  I   ++K K+ +
Sbjct: 213 RVVDDNKFHLQEGDLISLRGKGRSKLMAIKGVSKKDKWKI 252


>gi|363892722|ref|ZP_09319881.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
           CM2]
 gi|361963025|gb|EHL16116.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
           CM2]
          Length = 261

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 96  EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
           ++  +DF+ P   +  +  L   + ++   A GG   +ER ++ + +P+ +      +  
Sbjct: 35  DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 213
           L + GNF F+  SH D LG+++  GI REKIGDI +   K    +V+ E + +Y+I+++ 
Sbjct: 94  LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
            + + S+    +P+  L              +SLR+D + +  F LSR+  +++I +  V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIKSERV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
           +VN+  V      +    ++SV G GR      N  ++KGK  + L  Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260


>gi|76798282|ref|ZP_00780529.1| ylmH protein [Streptococcus agalactiae 18RS21]
 gi|76586354|gb|EAO62865.1| ylmH protein [Streptococcus agalactiae 18RS21]
          Length = 179

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ LV  ++ ++L+ 
Sbjct: 6   LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           S+ K+G  SV    +PL  L       +    I +SLR+D + +   K+SR++   LI  
Sbjct: 65  SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIEA 124

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVEL 318
             V+VN+ TV +    L  GD++SV G GR  +   +  T+  K+ +E+
Sbjct: 125 DKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 173


>gi|302672285|ref|YP_003832245.1| RNA-binding S4 domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302396758|gb|ADL35663.1| RNA-binding S4 domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 271

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 30/259 (11%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD------------VKAVAQGGYPQ 131
           I ++A RA     V H+DFL+   + E  M  + LA                V  GG   
Sbjct: 15  IKDLANRAYLNGFVTHTDFLS---VSEIAMFYQILASEGVPGNVHEYCGASYVVYGGAED 71

Query: 132 AERCRLSVGHPEALT---------SDPDIVAALSIT--GNFGFQPCSHGDFLGSILGTGI 180
           AER  +    P+ L          +D  ++  + I    N      +H D+LGSI+  GI
Sbjct: 72  AERAMVCF-LPDYLDEETFLVSEKADNTVLKCVHIKPLNNKFADDLNHRDYLGSIMNLGI 130

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
            R++IGDI L G+K A     P++A  +   L ++ + SV C  +     + EP   +  
Sbjct: 131 ERDQIGDI-LAGDKEAYIFATPDIAQMMEKELIRIRHTSVRCGIVNAADCDIEPKFEEIS 189

Query: 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300
            ++ AS R+DA+ +  + LSRS+   LI +  V ++  T    G  L+ G  VSV G G+
Sbjct: 190 GSV-ASERIDAILAFVYHLSRSEAQKLIESESVFIDGRTAYSGGYDLKEGARVSVRGHGK 248

Query: 301 -IKIGEINSTRKGKFAVEL 318
            I +G  N+TRKG+  + +
Sbjct: 249 FIYLGTSNTTRKGRLFISV 267


>gi|429765555|ref|ZP_19297840.1| S4 domain protein [Clostridium celatum DSM 1785]
 gi|429186006|gb|EKY26969.1| S4 domain protein [Clostridium celatum DSM 1785]
          Length = 255

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 20/264 (7%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           DD+LK    K  IE+V  + E    A  +     + F   P +    +      +    A
Sbjct: 5   DDILKNFS-KEDIEDVIKVYECMNIAYLKDIPTFTKFFCKPNIWMYFIKEFNSNNFSVKA 63

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           + G  + +R  LS  +   + S P     L I+ +  F   +H D+LG+++  G+ R+K+
Sbjct: 64  ECGLDEGDRKILSFNN---IYSIPYPYKILKISNSSKFNKLTHRDYLGALMALGLERDKL 120

Query: 186 GDIILQGEKGAQFLVVP---ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK- 241
           GD+ +  +    + +VP   ELADY+ T L+ V    V    I     E + P+  +FK 
Sbjct: 121 GDLRVNDD----YAIVPVYEELADYICTELKLVNKAPVKVCEI----FEEDLPKA-NFKE 171

Query: 242 --TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
              I  SLR+D   S    +SR K + LI    V V++  V      ++ G  +++SG G
Sbjct: 172 ETIIIPSLRLDNFVSKLSNVSRGKAITLIDTNKVLVDYAKVKGKSQEIKEGQRITISGTG 231

Query: 300 RIKIGEI-NSTRKGKFAVELIQYL 322
           +  +G I  +T+ G++ + + +Y+
Sbjct: 232 KFLVGNIMGNTKSGRYKINIKKYI 255


>gi|385837519|ref|YP_005875149.1| hypothetical protein [Lactococcus lactis subsp. cremoris A76]
 gi|358748747|gb|AEU39726.1| hypothetical protein llh_2750 [Lactococcus lactis subsp. cremoris
           A76]
          Length = 263

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           S F   P   E +  L    +V+  +     Q E  ++ +  P     D D   +A L I
Sbjct: 36  STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIALLEI 94

Query: 158 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   SH   LG+ LG  G+ R+++GDII+   K  Q  V   L +    S++K+G
Sbjct: 95  SYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDSK-IQIFVSKHLVESF-KSIDKIG 152

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
             +V    I L  L  +  R      +   LR+D + +  FK+SR+   N++ +  V++N
Sbjct: 153 RAAVKIDEISLTDLAQDTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVKIN 212

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 318
           +  + K   ++  GD++SV G G IKI   +  T+KGK  VE+
Sbjct: 213 YQEIDKKDFSVGAGDLISVRGFGCIKILSLLGLTKKGKQRVEI 255


>gi|168334455|ref|ZP_02692626.1| RNA-binding S4 [Epulopiscium sp. 'N.t. morphotype B']
          Length = 249

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GGYP A R  + +   +    +P  +  + +   FG +  +H DFLGSIL  GI+R KIG
Sbjct: 55  GGYPXASRSIVCITPFDEPLVNPIAILKIDVKTGFG-KELTHRDFLGSILSLGISRAKIG 113

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVS-VSCTRIPLLALEYEPPRTKSFKTIEA 245
           DI++    GA      ++A+Y+  +L K+   + +  + I    LE   P+     T  +
Sbjct: 114 DIVVTS-FGAYVFCHIDVAEYIRFNLSKIARFTKIETSIISNNELEIPVPKFTEITTSVS 172

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLRVD +  A F LSR++   LI +   ++N   +  +  +++TGD +++ G G++ + E
Sbjct: 173 SLRVDVILCAIFNLSRNESSKLIKSEKAKLNGLVINNSSFSVKTGDTLTLRGYGKLILDE 232

Query: 306 I 306
           I
Sbjct: 233 I 233


>gi|424780486|ref|ZP_18207359.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
           M35/04/3]
 gi|422842888|gb|EKU27335.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
           M35/04/3]
          Length = 261

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 19/225 (8%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQ---AERCRLSVGHPEALTSDPDIVAALSIT 158
           FL P   +E  + +E LA  + V+   Y Q   +E+ R+ + +PE    + +      I 
Sbjct: 39  FLNP---REQYL-VENLAHQRGVSVQAYSQFRHSEQKRVLL-YPEYFVPEEEDFETQLIE 93

Query: 159 GNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
            ++   F    H + LG++LG GI RE+IGDI L  +K  Q  V   L  YL  ++ K+ 
Sbjct: 94  IHYAQKFVELHHREVLGTLLGQGIKREQIGDIHL-NDKQIQVEVSQNLTSYLCMNVTKMS 152

Query: 217 NVSVSCTRIPLLALEYE---PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           N SV   R+  +A E       R+K+      S R+D + +  + +SR     LI    V
Sbjct: 153 NQSV---RLEPIAKEKRIDAEERSKTENATITSFRLDNIVATVYNISRQLSKKLIQAEKV 209

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI--NSTRKGKFAV 316
           +VN+ TV K   ++   D++SV G GR +I EI    T+KG++ +
Sbjct: 210 KVNFMTVDKADFSVAEEDLISVRGYGRCQIKEIGKERTKKGRYRI 254


>gi|310659182|ref|YP_003936903.1| RNA binding protein [[Clostridium] sticklandii]
 gi|308825960|emb|CBH21998.1| RNA binding protein [[Clostridium] sticklandii]
          Length = 261

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 9/223 (4%)

Query: 96  EVLHSDFLTPPVLKESMMALEKLADV--KAVAQGGYPQAERCRLSVGH--PEALTSDPDI 151
           ++ ++DF+ P   K  +  L+ L  +  +  +    P+    ++   +   E+L    DI
Sbjct: 34  DIRNTDFMNPFEKKNFISILKGLDSIGFRECSPSAMPERSIIQIFPEYIAEESLEKPYDI 93

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I+GNF F   SH D+LG++L  GI REK+GDI +  E  A  +    ++ Y++ +
Sbjct: 94  I---KISGNFKFNKLSHRDYLGALLALGIKREKLGDIHVH-EACAYIIADKNVSHYIMFN 149

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           L  +   S++   I     E   P  +      +S R DA+ S  F LSR+K+   I   
Sbjct: 150 LTSINKASITAKIIDEDDFEESIPNYQEKIITTSSRRADAVVSEIFNLSRAKIQEYILKE 209

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGK 313
            + V++   T N   ++ G ++S+ G GR    E I+ T+KG+
Sbjct: 210 RLYVDFELFTTNSREIKDGSLISLKGYGRAIFDEVISETKKGR 252


>gi|218133259|ref|ZP_03462063.1| hypothetical protein BACPEC_01124 [[Bacteroides] pectinophilus ATCC
           43243]
 gi|217992132|gb|EEC58136.1| S4 domain protein [[Bacteroides] pectinophilus ATCC 43243]
          Length = 251

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 124/258 (48%), Gaps = 17/258 (6%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           D N  +  K   E+AR++ ++   L +DFL+ P   ++ +A +          GG    E
Sbjct: 2   DNNDQQLKKRFDELARKSYNQGIYLFTDFLSMP---DAAIACDSAPAGYVTLFGGTDGCE 58

Query: 134 RCRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
           R     G+ E    + D    +V    +   F     +H DFLG+++  GI R+ IGDI+
Sbjct: 59  RVMARFGNAEEFGYEEDFPIDVVMIEPLIKKFS-DELTHRDFLGALMNLGIERDVIGDIM 117

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSC----TRIPLLALEYEPPRTKSFKTIEA 245
           ++ +K A      ++  Y+  SL+KV + SV C    T     ++  E  R +    + +
Sbjct: 118 IR-DKTAYVFATRKIVPYIADSLDKVKHTSVKCRILSTEEITASVSVELERQE---LVIS 173

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIG 304
           S R+DA+ S  + +SRS+ + +  +  V VN      N   ++ GD+V+V G G+ +  G
Sbjct: 174 SERLDAVISKLYNMSRSQSIEMFRDKKVFVNGRQYENNSGVVKPGDVVAVRGFGKFVYEG 233

Query: 305 EINSTRKGKFAVELIQYL 322
            I  T+KG+  V   +Y+
Sbjct: 234 IIYETKKGRICVAADRYV 251


>gi|406837717|ref|ZP_11097311.1| cell division protein [Lactobacillus vini DSM 20605]
          Length = 260

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 15/208 (7%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILG 177
            VK  A G + QAER R  + +PE      +   +A + I     F    H   LG++LG
Sbjct: 54  QVKFCANGLFQQAER-RRGLFYPEYFNPKQEDFQLALMEIKYPVKFAQLEHRQILGTLLG 112

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EY 232
           +G+ R  IGDI+  G    Q ++   + ++L   +E++G + V    I    L     E+
Sbjct: 113 SGLKRSAIGDILTDGIHW-QVIIEKPMVEFLKQEIERIGKIKVQLEEISFSQLLQSKIEW 171

Query: 233 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 292
           E     SF    +SLR+D L ++    SR++   L++   V +NW  + +    L+  D+
Sbjct: 172 EKA---SFSV--SSLRIDNLVASVCHFSRARCKQLLAAKKVHLNWMLIEQPDFDLKLQDV 226

Query: 293 VSVSGKGRIKIGEINS-TRKGKFAVELI 319
           +SV G GR ++  +   ++KG   VE++
Sbjct: 227 ISVRGFGRFQLASLGQLSKKGHLRVEVL 254


>gi|407796627|ref|ZP_11143580.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
 gi|407019143|gb|EKE31862.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
          Length = 255

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVK-AVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
           +DFL P   +E  +A   L +    V   G    ER R+ +     L  + D  +  L  
Sbjct: 34  TDFLNP---RERQIATSLLRNTDLQVEFSGEDDEERRRMIIAPEYELIEEEDFQLTLLEA 90

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
           +    F    H D LG+ +  GI REK+GD+I++ +     +   E++D++   L+++  
Sbjct: 91  SYPAKFVSLEHRDVLGAFMSLGIKREKLGDLIVK-DGFIHIIAAAEISDFIKMQLQQINK 149

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            SV    I + +        K      +SLR+D +    + + R K V  I  G V+VN+
Sbjct: 150 ASVRWKEIEMGSRMTSEEEWKESSATVSSLRIDVVLKEIYNMPRKKSVMYIKGGQVKVNF 209

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
            TV      L  GD++S+ GKGR ++ E+   T+K K+ +
Sbjct: 210 RTVDDPSFLLEEGDLISLRGKGRSELTEVMGQTKKDKWRI 249


>gi|409386151|ref|ZP_11238616.1| hypothetical protein, contains S4-like RNA binding domain
           [Lactococcus raffinolactis 4877]
 gi|399206561|emb|CCK19531.1| hypothetical protein, contains S4-like RNA binding domain
           [Lactococcus raffinolactis 4877]
          Length = 265

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
           +DFL P    +  +++  +  +D++        + E  ++ +        + D  +A L 
Sbjct: 36  TDFLNPRQVFILTTLVQGQHASDIQMFTSSAIAETEYVKVILAPTYYQLENADFELACLQ 95

Query: 157 ITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           I     F    H   LG++LG TG+ R KIGDI++  +  AQ  V  +LA  +  S+ K+
Sbjct: 96  IDFASKFVTLKHSQILGTLLGETGLERSKIGDIVVH-DTFAQVFVDAKLATLIADSIHKI 154

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
               V    I +        +  +     +SLR+D   +  F +SR+   NLI +   +V
Sbjct: 155 ARSGVRIREIDVTKFVSTTEQAVTKTVTLSSLRLDKAIATVFNMSRNLAQNLIQSNKAKV 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           N+  V +N   L  GD+VS+ G GR+KIG+I   T+K K  VE+
Sbjct: 215 NYAEVLRNDFELVAGDLVSIRGLGRLKIGQILGLTKKDKVRVEV 258


>gi|373469182|ref|ZP_09560390.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
           F0431]
 gi|371764861|gb|EHO53227.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
           F0431]
          Length = 249

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
           L++AR A  +  V HS FL         M   +L +VK++  GGY +AER   C      
Sbjct: 13  LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNVKSIMFGGYSEAERKVVCFYCDEK 72

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201
           PE      + +    +   F     +H DFLG+I+  GI R  IGDI +  +  A  + +
Sbjct: 73  PEF--DMLEYIRVAPVNKKFA-DELTHRDFLGAIMNLGIERHMIGDICIV-DNVAHIITL 128

Query: 202 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 261
             +AD +I  L  V +  V   +  +  L+    R +  K    S R+D++  + + +SR
Sbjct: 129 KSMADTIINELGTVKHTKVVLNKESIENLK-TVNRVEYKKINIPSERLDSVIGSIYNISR 187

Query: 262 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVE 317
           SK+   I  G V +N      +   ++ GDI++V G GR K   I+ST RKG+   E
Sbjct: 188 SKVNMYIDAGRVFINSRQCLSHSMKVKDGDIITVRGLGRAKFLGISSTSRKGRLFAE 244


>gi|322517030|ref|ZP_08069918.1| S4 domain-containing protein YlmH [Streptococcus vestibularis ATCC
           49124]
 gi|322124398|gb|EFX95898.1| S4 domain-containing protein YlmH [Streptococcus vestibularis ATCC
           49124]
          Length = 230

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 8/224 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 2   TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F    H   LG+++   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 60  SYARQFNKLIHPKILGALINQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 119

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
            VSV+              +   F  + +S+R+D + +   K+SRS  + LI++G V++N
Sbjct: 120 KVSVTLREASKDDWISNQEKYSQFFVLLSSMRLDNVLATVLKISRSNALKLIASGKVKLN 179

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           +  + K   T+  GD++SV G GR ++ +   I+ + K K  ++
Sbjct: 180 YRQIEKADQTISIGDMISVRGFGRFRLAQQEGISKSGKAKVVID 223


>gi|116491157|ref|YP_810701.1| cell division protein [Oenococcus oeni PSU-1]
 gi|419857930|ref|ZP_14380631.1| cell division protein [Oenococcus oeni AWRIB202]
 gi|419858390|ref|ZP_14381063.1| cell division protein [Oenococcus oeni DSM 20252 = AWRIB129]
 gi|421184041|ref|ZP_15641468.1| cell division protein [Oenococcus oeni AWRIB318]
 gi|421190579|ref|ZP_15647877.1| cell division protein [Oenococcus oeni AWRIB422]
 gi|421191513|ref|ZP_15648787.1| cell division protein [Oenococcus oeni AWRIB548]
 gi|116091882|gb|ABJ57036.1| Cell division protein, S4-like domain [Oenococcus oeni PSU-1]
 gi|399968275|gb|EJO02727.1| cell division protein [Oenococcus oeni AWRIB318]
 gi|399969631|gb|EJO03961.1| cell division protein [Oenococcus oeni AWRIB422]
 gi|399971631|gb|EJO05871.1| cell division protein [Oenococcus oeni AWRIB548]
 gi|410497082|gb|EKP88560.1| cell division protein [Oenococcus oeni AWRIB202]
 gi|410498826|gb|EKP90271.1| cell division protein [Oenococcus oeni DSM 20252 = AWRIB129]
          Length = 256

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLT---PPVLKESMMALEKLAD 120
           NFD  L    D   I   K +L+   +A  +       FLT    P  ++ ++ L K   
Sbjct: 3   NFDVNLNHYSDAEKIF-AKQVLDWFFQADEK------SFLTVFLNPQEQKILLELAKQIG 55

Query: 121 VKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
                 GGY +AE  R  +G H E   +D  I + L +     +    H   LGS+L  G
Sbjct: 56  FSVRFGGGYQRAENKRALIGDHKE---NDFQI-SLLQLNYASHYVHLHHSTVLGSLLHHG 111

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I+ ++IGD+I + +   Q L+   LAD+++ ++++  +  ++  +IP   +       K 
Sbjct: 112 ISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKITFEKIPFEKILNPQSDEKE 170

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
            + + +S R+D L S  +  SR+   +LI  G V VNW          + GD+VS  G G
Sbjct: 171 KEIVISSQRIDLLISQIYNFSRAHAKDLIETGQVMVNWFEKDNTSYLAKLGDVVSTHGYG 230

Query: 300 RIKI 303
           RI++
Sbjct: 231 RIRL 234


>gi|229918558|ref|YP_002887204.1| RNA-binding S4 domain-containing protein [Exiguobacterium sp. AT1b]
 gi|229469987|gb|ACQ71759.1| RNA-binding S4 domain protein [Exiguobacterium sp. AT1b]
          Length = 256

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 20/247 (8%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
           V+ +L+  ++  +   +  +DFL P         +++L   + V    GG+  AER RL 
Sbjct: 15  VEQVLDWVQQVENSYVLKLTDFLDP----REQQIVKQLVGKQLVIHDDGGFEGAERRRLI 70

Query: 139 VGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           +  P+    +PD   +    I     F   +H    G++L  G+ R+K GD++L  E+  
Sbjct: 71  LA-PDYYELNPDDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLD-EEIV 128

Query: 197 QFLVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFKT--IEASLRVDA 251
           QF    E   ++  +LE+VG   V   S  +  +L +    P+T+  +   I +SLR D 
Sbjct: 129 QFATTREAVGFIEMNLERVGKAKVRISSVAKEEILVV----PKTEWVEGFGIVSSLRFDT 184

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 310
           +AS    +SR K   L+ +GD +VN   +      L   D++SV G GRIK+ EI  ST+
Sbjct: 185 VASEVLNISRQKAQALVKHGDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEILGSTK 244

Query: 311 KGKFAVE 317
           + K  ++
Sbjct: 245 REKIKIQ 251


>gi|125717514|ref|YP_001034647.1| hypothetical protein SSA_0659 [Streptococcus sanguinis SK36]
 gi|422853762|ref|ZP_16900426.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK160]
 gi|422856015|ref|ZP_16902673.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1]
 gi|422865984|ref|ZP_16912609.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1058]
 gi|125497431|gb|ABN44097.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
 gi|325697073|gb|EGD38960.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK160]
 gi|327461676|gb|EGF08007.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1]
 gi|327489529|gb|EGF21322.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1058]
          Length = 261

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 13/249 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           E +   LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  
Sbjct: 15  EFIDRSLELLQRVQDTYAFETTPFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70

Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGE 193
           R+ V      L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G+
Sbjct: 71  RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGD 130

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
           + AQ  V   LA Y I  + K+  + V    +    L  E  +  + + + +SLR+D L 
Sbjct: 131 R-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLV 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG- 312
           ++ FKLSR++   LIS   V++N+         +   D++SV   GR K+   N   K  
Sbjct: 190 ASTFKLSRNQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNG 249

Query: 313 --KFAVELI 319
             K  VEL+
Sbjct: 250 KHKLTVELL 258


>gi|422883610|ref|ZP_16930059.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK49]
 gi|332362883|gb|EGJ40676.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK49]
          Length = 261

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 17/251 (6%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           E +   LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  
Sbjct: 15  EFIDRSLELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70

Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
           R+ V      L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G+
Sbjct: 71  RVLVAPSYYQLNKDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGD 130

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
           + AQ  V   L  Y I  + KV  + V    +       E  +  + + + +SLR+D L 
Sbjct: 131 R-AQLFVDKRLTQYFIDHVSKVAKMPVRLKEVSFAEQLKEQKQAVTREILASSLRLDKLV 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DIVSVSGKGRIKIGEINSTRK 311
           ++ FKLSRS+   LIS   V+VN+     +  +L+ G  D++SV   GR K+   N   K
Sbjct: 190 ASTFKLSRSQAAQLISGKHVKVNYA--VNDNPSLQVGLEDLISVRRFGRFKVLRENGLSK 247

Query: 312 G---KFAVELI 319
               K  VEL+
Sbjct: 248 NGKHKLTVELL 258


>gi|212639640|ref|YP_002316160.1| hypothetical protein Aflv_1814 [Anoxybacillus flavithermus WK1]
 gi|212561120|gb|ACJ34175.1| Uncharacterized conserved protein, contains S4-like domain
           [Anoxybacillus flavithermus WK1]
          Length = 257

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 9/195 (4%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GG    ER R ++ +P  +  + +   ++  S+     F    H D LG++L  G+ REK
Sbjct: 61  GGSSSVERKR-ALLYPTYMQPNEEDFQLSLFSVRYPKKFVTLGHRDVLGALLSLGVKREK 119

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL--EYEPPRTKSFKT 242
            GDI++  +   QF+V  E+A ++  ++  +G   VS    PL  L    E    ++F  
Sbjct: 120 FGDIVIVDD-IIQFVVAKEIAPFVKMNVTTIGKAKVSLEEQPLSQLLDVKEEWEEETFTV 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +SLR+DA+ +  F++SR K    I+   V+VNW TV +     + GD++S+ G GR +
Sbjct: 179 --SSLRLDAILAQCFRISRQKSQAFIAQNFVKVNWKTVDQAHMECQEGDLLSLRGYGRCR 236

Query: 303 IGEI-NSTRKGKFAV 316
           +  I   T+K K+ +
Sbjct: 237 LQAIVGQTKKEKWRI 251


>gi|404418421|ref|ZP_11000188.1| S4 domain-containing protein YlmH [Staphylococcus arlettae CVD059]
 gi|403489014|gb|EJY94592.1| S4 domain-containing protein YlmH [Staphylococcus arlettae CVD059]
          Length = 240

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 13/239 (5%)

Query: 84  ILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +L+  ++A+ +   + + FL P    +LK  + + E   D+     GG  QAER R  + 
Sbjct: 2   LLDKCQQANEQYAPVLTHFLDPRGQYILKVIVGSFE---DLDVHFYGG-NQAERQRAIIA 57

Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             + E    D DIV  + I     F    H   LG+I+  GI RE++GDII+   +  QF
Sbjct: 58  PTYFEPNADDFDIVL-IEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIV--NERIQF 114

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           ++  +L  Y+I  L ++   +V    IPL  +     + K F+T  + LR+D +     +
Sbjct: 115 VLTKQLESYIILELTRIKGATVKLNTIPLTNMIQSNEQWKYFETTVSGLRLDVVLKEMIR 174

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
            SR+    LI    V+VN T +  +   L   D++S+ G GR  + EI   T+KGK  +
Sbjct: 175 KSRTIAKQLIDKKRVKVNHTIIDASDFQLAQEDLLSIQGYGRAVVVEIGGKTKKGKVRI 233


>gi|386344430|ref|YP_006040594.1| hypothetical protein STH8232_0932 [Streptococcus thermophilus JIM
           8232]
 gi|339277891|emb|CCC19639.1| hypothetical protein STH8232_0932 [Streptococcus thermophilus JIM
           8232]
          Length = 266

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 38  TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F   +H   LG++L   G+ R+  GD+IL  E   QF +   LA Y I ++ K+G
Sbjct: 96  SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+   +     +  +   ++SF  + +S+R+D + S   K  RS  + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTPRSNALKLIASGKIKL 214

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K+   +  GD++SV G GR ++G+   I+ + K K  ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259


>gi|365135099|ref|ZP_09343624.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
           4_3_54A2FAA]
 gi|363613069|gb|EHL64593.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
           4_3_54A2FAA]
          Length = 254

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GGYP AER R+     E    +P     L        +  +H D+LG+++  GI RE IG
Sbjct: 62  GGYPDAER-RILRLFGEYGAQEPLPAVCLFAQTLRADRALTHRDYLGALMSLGIRRECIG 120

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKT 242
           DI+L  E GA   V+  +A  +   L  VG  SV C R      L   E  P +T +   
Sbjct: 121 DILLS-EDGAYLFVLDTVAPLVCDELSSVGRCSV-CVRAGRAEELPGREERPAQTATV-- 176

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             ASLR+DA+ +A   +SR   V L+ +G V VN  +       +   D+ S+ G+G+ K
Sbjct: 177 --ASLRLDAVLAAMLHISRGDAVQLVKSGMVEVNHVSTVSAHYEVFENDVFSIRGRGKYK 234

Query: 303 IGEINS-TRKGKFAVELIQY 321
           +  + + +RKG+  V  I+Y
Sbjct: 235 LCGVGAKSRKGRTFVSYIEY 254


>gi|402574193|ref|YP_006623536.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
           13257]
 gi|402255390|gb|AFQ45665.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
           13257]
          Length = 265

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 131/275 (47%), Gaps = 22/275 (8%)

Query: 54  IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ES 111
           +RHLI         +LK   DK A  E  H+L+      S+     + FL+  +    ES
Sbjct: 1   MRHLIDR------SVLKYWVDKEARLEAAHLLDQVNLVLSKEFQQVTPFLSFAMRDWIES 54

Query: 112 MMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDPDIVAALSITGNFGFQPCSHGD 170
           ++  E LA    +A+GG P AER R+ +G   + +  +   ++ LS+          H  
Sbjct: 55  VLRKEHLA---YLAEGGLPDAERVRIIMGAKGDIMKPEQAEISLLSVRATNLRAKLEHHQ 111

Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSCTRIP 226
            LGS++G G+ R+  GDI   G+ G       E+   L+    + G    NVS+S   IP
Sbjct: 112 ILGSLMGLGLRRDLFGDI-QAGQSGFYVATTLEIVPVLLNQWTEAGREKINVSIS-EGIP 169

Query: 227 LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTT 286
            L     P   +  +    S R+DA+ +  F +SRS     I+ G V+ +   VTK  T 
Sbjct: 170 DLL----PGLGEERRITVNSSRLDAVIANAFGVSRSMAQEWITQGKVKKSGLGVTKVETE 225

Query: 287 LRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 321
           ++  D+VS  G GR+K+ E ++TRK K A +++ +
Sbjct: 226 VQPNDLVSCRGHGRVKLLECSNTRKDKIAWQILLF 260


>gi|323352734|ref|ZP_08087704.1| S4 domain-containing protein YlmH [Streptococcus sanguinis VMC66]
 gi|322121770|gb|EFX93516.1| S4 domain-containing protein YlmH [Streptococcus sanguinis VMC66]
          Length = 260

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   +  +E  R+ V  
Sbjct: 20  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASTDFFPSELARVLVAP 75

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ GE+ AQ  
Sbjct: 76  SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGER-AQLF 134

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + K+  + V    +       E  ++ + + + +SLR+D L ++ FKL
Sbjct: 135 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQSATREILASSLRLDKLVASTFKL 194

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 195 SRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 254

Query: 317 ELI 319
           EL+
Sbjct: 255 ELL 257


>gi|392971788|ref|ZP_10337181.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
           Mu2]
 gi|392510327|emb|CCI60471.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
           Mu2]
          Length = 259

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 7/245 (2%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
           K   E +  +++   RA+ +   + + FL P       + +    D++    GG P AER
Sbjct: 12  KEEHELIDQLMDKCNRANEQYAPILTPFLDPRGQYIMSVIVGSYDDLEVTFFGG-PYAER 70

Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
            R  V  P+ L  + ++   + +  ++   F    H   LG+I+  GI RE++GDII+  
Sbjct: 71  KRAIVA-PDYLVPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIV-- 127

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           +   QF +  +L  Y++  L ++   +V    IP+  +       ++++   + LR+D +
Sbjct: 128 DDSIQFTLTKQLESYIMLELNRIKGATVKLNSIPIKDMIQSKEHWQTYEATVSGLRLDVI 187

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
                + SR+    LI    V+VN T +      L +GD++S+ G GR  I +I   T+K
Sbjct: 188 LKEMIRKSRTIAKQLIDKKRVKVNHTMIDATDFQLDSGDLLSIQGYGRAMITDIGGKTKK 247

Query: 312 GKFAV 316
            K  +
Sbjct: 248 DKVRI 252


>gi|403046887|ref|ZP_10902356.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
 gi|402763583|gb|EJX17676.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
          Length = 259

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 7/245 (2%)

Query: 75  KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
           K   E +  +++   RA+ +   + + FL P       + +    D++    GG P AER
Sbjct: 12  KEEHELIDQLMDKCNRANEQYAPILTPFLDPRGQYIMSVIVGSYDDLEVTFFGG-PYAER 70

Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
            R  V  P+ L  + ++   + +  ++   F    H   LG+I+  GI RE++GDII+  
Sbjct: 71  KRAIVA-PDYLMPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIV-- 127

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           +   QF +  +L  Y++  L ++   +V    IP+  +       ++++   + LR+D +
Sbjct: 128 DDSIQFTLTKQLESYIMLELNRIKGATVKLNSIPIKDMIQSKEHWQTYEATVSGLRLDVI 187

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
                + SR+    LI    V+VN T +      L +GD++S+ G GR  I +I   T+K
Sbjct: 188 LKEMIRKSRTIAKQLIDKKRVKVNHTMIDATDFQLDSGDLLSIQGYGRAMITDIGGKTKK 247

Query: 312 GKFAV 316
            K  +
Sbjct: 248 DKVRI 252


>gi|313890772|ref|ZP_07824397.1| S4 domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|416851507|ref|ZP_11908652.1| S4 domain protein [Streptococcus pseudoporcinus LQ 940-04]
 gi|313120873|gb|EFR43987.1| S4 domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|356738996|gb|EHI64228.1| S4 domain protein [Streptococcus pseudoporcinus LQ 940-04]
          Length = 262

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I ++ +R         ++FL P  + E +  +   +D    +   +   E  R+ + 
Sbjct: 18  IEKIQDIIQRVEDSYSFYLTEFLNPRQV-EILKIVVASSDCHCFSSSDFYHTEYGRVIIA 76

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
                 ++ D  +A + I+ N  F    H   LG+ +   GI R  +GDI++     AQ 
Sbjct: 77  PDYYQLNEGDFELAVVDISYNAKFNTIKHAQILGTFIHELGIQRSLLGDILV-APGHAQV 135

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +    +  Y IT++ K+   SV+   + L  L       +  + + +SLR+D L +  FK
Sbjct: 136 MTTKSMLSYAITNISKIARASVTLKEVSLENLIQTNVGEEHLELLFSSLRLDVLIANVFK 195

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           LSRS+ + L+ +  V++N+    K    L  GD++SV G GR ++ E N  T+KGK+ + 
Sbjct: 196 LSRSQAIKLVESEKVKINYRISRKASDLLGIGDLISVRGFGRFQLLEDNGLTKKGKYKLT 255

Query: 318 L 318
           +
Sbjct: 256 I 256


>gi|325661583|ref|ZP_08150207.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331084857|ref|ZP_08333945.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472110|gb|EGC75324.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410951|gb|EGG90373.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 256

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ++E+++ A  R  + ++DFL    L       +          GGY  +ER +++   
Sbjct: 10  KRLIELSKIAYHRNFITYTDFLNLNELNILHTLPKDTLYTPYRTFGGYASSER-QIAAFL 68

Query: 142 PEALTSDPDI---------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG 192
           P+AL    +I         +  L  +  F  Q  SH D+LG++L  GI R KIGDII++ 
Sbjct: 69  PDALCLRSEIEDLAYPMGIIHILPRSQKFSEQ-LSHRDYLGALLSLGIERSKIGDIIVE- 126

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           E+GA   V  +L  Y+   + ++    V           Y     K   T+ AS+R+D L
Sbjct: 127 EQGAFVFVSDKLLSYVCKEMTQIRRTQVIVCEESFSEFHYTQKYEKITGTV-ASVRLDTL 185

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRK 311
            S  F  SRS+L  LI  G V VN   ++ NG  ++  D++SV G G+ I    I+ T+K
Sbjct: 186 LSLAFSSSRSRLSPLIEAGKVFVNGKLISSNGYNVKEDDVISVRGYGKFIYRKVISQTKK 245

Query: 312 GKFAVEL 318
           G+  VE+
Sbjct: 246 GRLLVEI 252


>gi|452995419|emb|CCQ92906.1| putative RNA-binding protein ylmH [Clostridium ultunense Esp]
          Length = 261

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 99/220 (45%), Gaps = 12/220 (5%)

Query: 100 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVA 153
           +DFL P      M  L  LA     +     GGY  AER R  L          +   + 
Sbjct: 36  TDFLDP----RQMEILRNLAMHRGGIALFENGGYEGAERKRTLLLPEGENPPEEEEFHIG 91

Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
            L I     F    H D+LG++L  GI REK GD+    E+GA  ++  E+ADY+   L 
Sbjct: 92  FLHIRPRGRFYSLEHRDYLGALLHVGIKREKFGDL-WTVEEGAMLVLAEEMADYVSLQLT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           +VG V V   R      E    + +  +   +S+R+DA+ +    LSR+K    I  G V
Sbjct: 151 EVGRVPVVVERKEKGEWELPTVKLEERRITTSSMRLDAVLAEMLPLSRAKTSEWIKGGKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKG 312
           + N     K    ++ GD++SV   GR   + E+  T+KG
Sbjct: 211 KRNHRVAVKPDEEVKVGDLLSVREYGRFYLLEEMGRTKKG 250


>gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01]
 gi|256848735|ref|ZP_05554169.1| cell-division protein [Lactobacillus crispatus MV-1A-US]
 gi|227863185|gb|EEJ70631.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01]
 gi|256714274|gb|EEU29261.1| cell-division protein [Lactobacillus crispatus MV-1A-US]
          Length = 266

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
           + E + +DFL P   K +++      D      GGYP AE+ R+ +   E L   P    
Sbjct: 34  KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +    I     F   ++   LG++  +GI     GDII   +   QF    E+ ++    
Sbjct: 91  IQPYEIEYPQKFTKINYSVILGTLANSGIDTSIFGDIINDNQGKWQFFTKKEITEFFEEQ 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAGFKLSRSKLVNLIS 269
           ++++G   V     P+   E   P   S +   I AS+R+DA+ S   + SR ++  +I+
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTKIVASMRIDAVLSGISRQSRGQIQKMIN 208

Query: 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 318
           +  V++NW  +  +   ++  D++S+   GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHEIADSNIMIKEDDVLSLRHFGRILIEDVSTTRKGKYKVVL 257


>gi|281492478|ref|YP_003354458.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376142|gb|ADA65633.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
           subsp. lactis KF147]
          Length = 263

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 12/240 (5%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS--VGHP 142
           LE   R      V+ + FL P      +  L+ LA+ + V      +  R  L   +  P
Sbjct: 22  LEWINRVEESYSVISTFFLNPR----EVDILKTLANKRNVQIFSSEELARTELVKIILAP 77

Query: 143 EALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
           +    D +   ++ L I     F   SH   LG+ LG  G+ R+++GDII+   K  Q  
Sbjct: 78  DFYVLDREDFDISLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVF 136

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   L +    ++EK+G  +V    I L  L  E  +      +  +LRVD + +  FK+
Sbjct: 137 VSKHLVESF-KAIEKIGRAAVKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKI 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           SR+   N++ +  V+VN+  + K   ++   D++SV G GRIKI  I + T+KGK  VE+
Sbjct: 196 SRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILDFTKKGKQRVEI 255


>gi|451343653|ref|ZP_21912724.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
           569 = DSM 20559]
 gi|449337750|gb|EMD16907.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
           569 = DSM 20559]
          Length = 247

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 10/239 (4%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           V+ IL+   +A   + +L + F  P   ++S+++      +   + GG+  AE  R+ + 
Sbjct: 12  VRKILDYVNQADKGKMIL-TKFFDPH--QQSIVSRVIGNRLSVHSFGGFINAENKRMLIC 68

Query: 141 HPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
           H    +  D   ++ L    N  F    H D LG+++  GI RE IGDI    E    F 
Sbjct: 69  HDYYEIVPDDFHISVLKADYNDSFGKLKHSDVLGALMNLGIKREVIGDIC---ESPLSFA 125

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  E  DY+ T L K+   SV    +  L       + + F    +SLR+D L S+ F++
Sbjct: 126 ICDENCDYIKTHLRKIKKSSVHFGEVNELIEIRNEFKNQVFYV--SSLRLDKLISSLFRI 183

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           SR K    I++G+V+ N+  ++      +  DI+S+   GR+KI   +  TR G   +E
Sbjct: 184 SRIKANEAINSGNVKKNYQIISNASDVCKDADILSLRHYGRVKIHVTDKVTRSGNILIE 242


>gi|170016893|ref|YP_001727812.1| cell division protein [Leuconostoc citreum KM20]
 gi|414597042|ref|ZP_11446613.1| S4 domain protein [Leuconostoc citreum LBAE E16]
 gi|421878259|ref|ZP_16309741.1| S4 domain protein [Leuconostoc citreum LBAE C11]
 gi|169803750|gb|ACA82368.1| Cell division protein [Leuconostoc citreum KM20]
 gi|390447873|emb|CCF25861.1| S4 domain protein [Leuconostoc citreum LBAE C11]
 gi|390482156|emb|CCF28674.1| S4 domain protein [Leuconostoc citreum LBAE E16]
          Length = 263

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           +  R++      + + FL P         + ++ D+K V  GG   AE  R ++  P   
Sbjct: 25  DWIRQSQDEYRFILTYFLNPREQYILKTLVNRMNDLKVVFNGGVDGAESQR-AIISPNFY 83

Query: 146 TSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
           + + D   +A   I     F    H   LG+++ +GI R  IGDI L   +  Q +V  +
Sbjct: 84  SPELDDFELAVFEIKYPKKFTTLHHSTILGTLMHSGIKRAIIGDI-LNDAQQWQIIVDKK 142

Query: 204 LADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
           +  Y+  ++  VG   VS     L  A++ +    ++F  + ASLR+D + +  F L RS
Sbjct: 143 MLAYIQQTVLTVGRTKVSLVATTLNHAIQPKDDWEETF-VLLASLRIDTVIATIFDLPRS 201

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
              +L+    VR+NW TV K  TT+  GD++SV G GRI+
Sbjct: 202 VTKSLVEQQQVRLNWHTVIKPDTTVTVGDVISVRGYGRIQ 241


>gi|422860639|ref|ZP_16907283.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK330]
 gi|327469022|gb|EGF14494.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK330]
          Length = 261

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G++ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + KV  + V    +       E  +  + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVTKVAKMPVKLKEVSFEEQLKEQKQAVTREILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|15673847|ref|NP_268022.1| hypothetical protein L118668 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|385831350|ref|YP_005869163.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
           lactis CV56]
 gi|12724897|gb|AAK05963.1|AE006416_8 hypothetical protein L118668 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407358|gb|ADZ64429.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
           lactis CV56]
          Length = 263

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 144
           LE   R      V+ + FL P  + +++  L    +V+  +     + E  ++ +     
Sbjct: 22  LEWINRVEESYSVISTFFLNPREV-DTLKTLANKRNVQIFSSEELARTELVKIILAPDFY 80

Query: 145 LTSDPDI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVP 202
           +    D  +  L I     F   SH   LG+ LG  G+ R+++GDII+   K  Q  V  
Sbjct: 81  VLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSK 139

Query: 203 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
            L +    ++EK+G  ++    I L  L  E  +      +  +LRVD + +  FK+SR+
Sbjct: 140 HLVESF-KAIEKIGRAAIKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRN 198

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
              N++ +  V+VN+  + K   ++   D++SV G GRIKI  I + T+KGK  VE+
Sbjct: 199 IATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILDFTKKGKQRVEI 255


>gi|73662889|ref|YP_301670.1| hypothetical protein SSP1580 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495404|dbj|BAE18725.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 212

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 118 LADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSI 175
             D++    GG P AER R  +  P     D +    + I  ++   F    H   LG+I
Sbjct: 8   FEDLEVTFYGG-PFAERKRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTI 65

Query: 176 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 235
           +  GI R+++GDI++  +   QF +  +L  Y+I  L K+   SV    IP+  +     
Sbjct: 66  MSLGIERDQLGDIVV--DDRIQFTLTKQLESYIILELTKIKGASVKLNSIPIKDMIQSKE 123

Query: 236 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
             +SF+T  + LR+D +     + SRS    LI    V+VN T +      L +GD++S+
Sbjct: 124 HWQSFETTVSGLRLDVVLKEMVRKSRSIAKQLIDKKRVKVNHTVIDAADFQLDSGDLLSI 183

Query: 296 SGKGRIKIGEI-NSTRKGKFAV 316
            G GR  I +I   T+K K  +
Sbjct: 184 QGFGRAMITDIGGKTKKDKIRI 205


>gi|422849173|ref|ZP_16895849.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK115]
 gi|325690194|gb|EGD32198.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK115]
          Length = 261

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   +  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASTDFFPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G++ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + K+  + V    +       E  +  + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLREQKQAVTKEILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+ V LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRSQAVQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|421876571|ref|ZP_16308127.1| S4 domain-containing protein YlmH [Leuconostoc citreum LBAE C10]
 gi|372557648|emb|CCF24247.1| S4 domain-containing protein YlmH [Leuconostoc citreum LBAE C10]
          Length = 263

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
           +  R++      + + FL P         + ++ D+K V  GG   AE  R ++  P   
Sbjct: 25  DWIRQSQDEYRFILTYFLNPREQYILKTLVNRVNDLKVVFNGGIDGAESQR-AIISPNFY 83

Query: 146 TSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
           + + D   +A   I     F    H   LG+++ +GI R  IGDI L   +  Q +V  +
Sbjct: 84  SPELDDFELAVFEIKYPKKFTTLHHSTILGTLMHSGIKRAIIGDI-LNDAQQWQIIVDKK 142

Query: 204 LADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 262
           +  Y+  ++  VG   VS     L  A++ +    ++F  + ASLR+D + +  F L RS
Sbjct: 143 MLAYIQQTVLTVGRTKVSLVATTLNHAIQPKDDWEETF-VLLASLRIDTVIATIFDLPRS 201

Query: 263 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
              +L+    VR+NW TV K  TT+  GD++SV G GRI+
Sbjct: 202 VTKSLVEQQQVRLNWHTVIKPDTTVTVGDVISVRGYGRIQ 241


>gi|160933114|ref|ZP_02080503.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
 gi|156868188|gb|EDO61560.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
          Length = 257

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 11/200 (5%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-SHGDFLGSILGTGIAREKI 185
           GGY  A+R R+    P+ L  D +    +SI  +F  +   SH DFLG+++G GI RE +
Sbjct: 63  GGYEDAQR-RMFAAFPKELLPDSERFPVISIYLSFRKEDSLSHRDFLGALMGLGIKREAL 121

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE- 244
           GDI++ GE         E+A+++ T L KVG   V      + A  +  P  + F+ +  
Sbjct: 122 GDILV-GEGRCVLFCKEEIANFVETQLTKVGRTGVKL----MPAGSFPLPEGQRFEELSF 176

Query: 245 --ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             AS R+D   +   + SR K   L S G V  N+         L+ GD VS+ G G+  
Sbjct: 177 TVASNRLDCAVACFVRSSREKSRQLFSQGLVTHNYEVEKSLSAVLQEGDKVSIQGYGKFI 236

Query: 303 IGEIN-STRKGKFAVELIQY 321
           I +I   T+KG+  +   +Y
Sbjct: 237 IDQIGPETKKGRLKLAARKY 256


>gi|417004699|ref|ZP_11943338.1| hypothetical protein FSLSAGS3026_02848 [Streptococcus agalactiae
           FSL S3-026]
 gi|341577681|gb|EGS28088.1| hypothetical protein FSLSAGS3026_02848 [Streptococcus agalactiae
           FSL S3-026]
          Length = 179

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           ++ + I  N  F   +H   +G++L   G+ R  +GDI+++ E  AQ LV  ++ ++L+ 
Sbjct: 6   LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           S+ K+G  SV    +PL  L       +    I +SLR+D + +   K+SR++   LI  
Sbjct: 65  SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIEA 124

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVEL 318
             V+VN+  V +    L  GD++SV G GR  +   +  T+  K+ +E+
Sbjct: 125 DKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 173


>gi|386714188|ref|YP_006180511.1| hypothetical protein HBHAL_2889 [Halobacillus halophilus DSM 2266]
 gi|384073744|emb|CCG45237.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
          Length = 257

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 5/220 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           SDFL P         +    D      GG  QAER R  +     +  + D  +  L  +
Sbjct: 34  SDFLNPREQDIVKAVMGNHPDFNFGLSGGKDQAERKRAIIAPEYEIIEEEDYQLTMLEAS 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
               F    H D LG+ +  GI REK+GD++++ +   Q +   E++DY+  +   V   
Sbjct: 94  YPAKFVTLEHPDVLGAFMSLGIRREKLGDLVVK-DGVIQIITDQEISDYIRMNFTGVKRA 152

Query: 219 SVSCTRIPLLALEYEPPRTKSFK-TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           +V+    PL  +  E   T   K T  +SLR+D L    + +SR K    I +G V+VN+
Sbjct: 153 TVNFEEKPLSQM-LESEETWVMKNTTVSSLRLDVLVKEIYGMSRKKAGMHIDSGHVKVNF 211

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
             V      L+ GD++S+ G+GR K+ EI   T+K K+ V
Sbjct: 212 RVVENGAFQLQEGDLISLRGQGRSKLEEIQGLTKKEKYKV 251


>gi|332522681|ref|ZP_08398933.1| S4 domain protein [Streptococcus porcinus str. Jelinkova 176]
 gi|332313945|gb|EGJ26930.1| S4 domain protein [Streptococcus porcinus str. Jelinkova 176]
          Length = 262

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 5/241 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ I ++ RR         ++FL P  + E +  L   +D++  +   +   E  R+ + 
Sbjct: 18  IEKIQDIIRRVEDSYSFYLTEFLNPRQV-EILKILVASSDLQCFSSSDFYHTEYGRVIIA 76

Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 198
                 ++ D  +A + I+ N  F    H   LG+ +   GI R  +GDI++     AQ 
Sbjct: 77  PDYYHLNECDFALAIVDISYNAKFNTIKHAQILGAFIHELGIQRSLLGDILV-APGHAQV 135

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 258
           +    +  Y IT++ K+   SV+     L  L       K  + + +S R+D L +  FK
Sbjct: 136 MTTKSMLSYAITNISKIARASVNLKEGSLEDLIQANVDEKHLELLLSSFRLDTLIANVFK 195

Query: 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 317
           LSRS+ + L+ +  V++N+    K    L  GD++SV G GR ++ + N  T+ GK+ + 
Sbjct: 196 LSRSQAIKLVESEKVKINYRVSRKASDLLVIGDLISVRGFGRFQLLQDNGLTKNGKYKLT 255

Query: 318 L 318
           +
Sbjct: 256 I 256


>gi|422863097|ref|ZP_16909729.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK408]
 gi|327473397|gb|EGF18817.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK408]
          Length = 261

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 13/249 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           E +   LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  
Sbjct: 15  EFIDRSLELFQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70

Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
           R+ V      L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G+
Sbjct: 71  RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGD 130

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
             AQ  V   LA Y I  + K+  + V    +       E  +  + + + +SLR+D L 
Sbjct: 131 -CAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAATREILASSLRLDKLV 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG- 312
           ++ FKLSRS+   LIS   V++N+         +   D++SV   GR K+   N   K  
Sbjct: 190 ASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNG 249

Query: 313 --KFAVELI 319
             K  VEL+
Sbjct: 250 KHKLTVELL 258


>gi|422879369|ref|ZP_16925835.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1059]
 gi|422929215|ref|ZP_16962157.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
           29667]
 gi|422932186|ref|ZP_16965117.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK340]
 gi|332366081|gb|EGJ43837.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1059]
 gi|339615031|gb|EGQ19714.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
           29667]
 gi|339618970|gb|EGQ23560.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK340]
          Length = 261

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I     F   SH   +G++L   GI R   GDI++ G++ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEIYYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   L+ Y I  + K+  + V    + L     E  +  + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLSQYFIDHVSKIAKMPVRLKEVSLAEQLKEQKQAVTREILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|118587342|ref|ZP_01544768.1| hypothetical protein OENOO_64015 [Oenococcus oeni ATCC BAA-1163]
 gi|421187177|ref|ZP_15644553.1| cell division protein [Oenococcus oeni AWRIB418]
 gi|118432166|gb|EAV38906.1| hypothetical protein OENOO_64015 [Oenococcus oeni ATCC BAA-1163]
 gi|399964004|gb|EJN98659.1| cell division protein [Oenococcus oeni AWRIB418]
          Length = 256

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 7/203 (3%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
           FL P   K  ++ L K         GGY +AE  R  +G H E   +D  I + L +   
Sbjct: 38  FLNPQEQK-ILLELSKQTGFSVRFDGGYQKAENKRALIGDHKE---NDFQI-SLLQLNYA 92

Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 220
             +    H   LGS+L  GI+ ++IGD+I + +   Q L+   LAD+++ ++++  +  +
Sbjct: 93  SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151

Query: 221 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 280
           +  +I    +       K  + + +S R+D L S  +  SR+   +LI +G V VNW   
Sbjct: 152 TFEKISFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLIESGQVMVNWFEK 211

Query: 281 TKNGTTLRTGDIVSVSGKGRIKI 303
                  + GD+VS  G GRI++
Sbjct: 212 DNTSYLAKLGDVVSTHGYGRIRL 234


>gi|312863735|ref|ZP_07723973.1| S4 domain protein [Streptococcus vestibularis F0396]
 gi|311101271|gb|EFQ59476.1| S4 domain protein [Streptococcus vestibularis F0396]
          Length = 230

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
           +DFL P  + + +  L    ++K      +   E  R+ +  P+    D D   +  L I
Sbjct: 2   TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59

Query: 158 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           +    F    H   LG+++   G+ R+  GDIIL  E   QF +   LA Y I S+ K+G
Sbjct: 60  SYARQFNKLIHPKILGALINQLGLERQVFGDIILDEEGRVQFNIASHLASYAIMSITKIG 119

Query: 217 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            VSV+         +  +   ++SF  + +S+R+D + +   K+SRS  + LI++G V++
Sbjct: 120 KVSVTLREASKDDWISNKEKYSQSF-VLLSSMRLDNVLATVLKISRSNALKLIASGKVKL 178

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
           N+  + K   T+  GD++SV G GR ++ +   I+ + K K  ++
Sbjct: 179 NYRQIEKADQTISIGDMISVRGFGRFRLAQQEGISKSGKAKVVID 223


>gi|139473462|ref|YP_001128178.1| RNA binding protein [Streptococcus pyogenes str. Manfredo]
 gi|134271709|emb|CAM29942.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 263

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+  V K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRLVNKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|329766858|ref|ZP_08258386.1| hypothetical protein HMPREF0428_00083 [Gemella haemolysans M341]
 gi|328837583|gb|EGF87208.1| hypothetical protein HMPREF0428_00083 [Gemella haemolysans M341]
          Length = 256

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 102 FLT--PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
           FLT    ++ E ++A    +D K    GGY  AE+ +  +   E    D DIV  L    
Sbjct: 37  FLTNFEQIVLEQIVAY-NYSDFKIEFFGGYNDAEKKKAKIISNEYYDVDYDIVC-LKAKY 94

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
           N  F    H + LG+I   GI   + GDI++  E      V  E+ADY+     K G V+
Sbjct: 95  NNKFNKIEHRNILGAIHNLGININRFGDIVVL-ENEVYIFVDEEIADYITMEFTKAGRVN 153

Query: 220 VSCTRIPL--LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           ++  R+ L  +A+E    + + F+ + +S R+D++A+     SRSK+   +    +++N 
Sbjct: 154 LNFERVELADVAIE---KKYEDFEIVSSSFRLDSIAAKITNKSRSKVKEFLDQDFIKLNH 210

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
             V          DI+S+   GR  + E    +K 
Sbjct: 211 VIVRNGEKNCTIQDIISIRKYGRFVVKEYKQNKKS 245


>gi|295706356|ref|YP_003599431.1| RNA binding protein [Bacillus megaterium DSM 319]
 gi|294804015|gb|ADF41081.1| RNA binding protein [Bacillus megaterium DSM 319]
          Length = 257

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 11/232 (4%)

Query: 94  RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
           + +VLH      +DFL P   +     +    +V+    GG P AER R ++ +P+    
Sbjct: 22  KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80

Query: 148 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
           + +         N+   F    H   LGS +  G+ R K GDI++ G+   Q +V  E++
Sbjct: 81  ESEDFQLHMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVVAEEIS 139

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
            Y+  +L  +G   VS + I    L              +S+R+D L S    LSR K+ 
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELVEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
             I+NG V+VN+  + +       GDI+S+ G GR +I  +   T+K K+ +
Sbjct: 200 PFIANGAVKVNFKVIEQPSFECHEGDILSLRGHGRSRIVSLEGKTKKEKWRI 251


>gi|422858980|ref|ZP_16905630.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1057]
 gi|327458760|gb|EGF05108.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1057]
          Length = 261

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 6/208 (2%)

Query: 117 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
           K  DV+  A   Y  +E  R+ V      L  D   ++ L I+    F   SH   +G++
Sbjct: 52  KQYDVQVFASSDYFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111

Query: 176 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
           L   GI R   GDI++ G++ AQ  V   LA Y I  + KV  + V    +       E 
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVTKVAKMPVKLKEVSFEEQLKEQ 170

Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 294
            +  + + + +SLR+D L ++ FKLSRS+   LIS   V++N+         +   D++S
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLIS 230

Query: 295 VSGKGRIKIGEINSTRKG---KFAVELI 319
           V   GR K+   N   K    K  VEL+
Sbjct: 231 VRRFGRFKVLRENGLSKNGKHKLTVELL 258


>gi|251780297|ref|ZP_04823217.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084612|gb|EES50502.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 254

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 13/229 (5%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V  ++F +P +        E  ++ K   +G +   ER  +S  +   +   P  +  L 
Sbjct: 34  VFGNNFYSPKIWSWFKENCEN-SEFKVTCEGIFKDCERKMISFNN---IYDIPFPIKLLK 89

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           + G   F    H DFLG IL  GI R KIGD+I++ +    F +  ++  +L+++++K+G
Sbjct: 90  VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVE-DNVCYFPIHEDIFKFLLSNVDKIG 148

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
                   I     E + P+ K FK    + +SLR+D + S   KLSR+K   LI  G V
Sbjct: 149 KTPCCIAEI---QNEGDFPKIK-FKEDVILVSSLRIDGIVSKISKLSRAKAQMLIDQGQV 204

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 321
            +++  +      ++  + + + G G+  +GE I S++ GK+ + + +Y
Sbjct: 205 LIDYNKIKDKSYEVKVNERIVIRGIGKFIVGEVIGSSKSGKYKLIIKKY 253


>gi|295094443|emb|CBK83534.1| Uncharacterized conserved protein, contains S4-like domain
           [Coprococcus sp. ART55/1]
          Length = 259

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 23/270 (8%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
           N +D+LKG            + ++A  A  +    +++FL+   ++     LE+L+    
Sbjct: 2   NENDILKG-----------RLKDLANAAFRQNRYTYTNFLSAADMEVFYSNLEQLSFAGY 50

Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTG 179
              GG    +R  +  G+       P      +   +++  F     +H DFLG+++  G
Sbjct: 51  TIFGGRESCDRVMIVFGNEADCGYAPAFPICTMKVSAVSDKFS-DDLNHRDFLGALMNLG 109

Query: 180 IAREKIGDIILQ------GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
           I RE +GDI++           A    V  +ADY+  +L K+ + +V CT       +  
Sbjct: 110 IEREMVGDILVTESTHSGKHNNAYIFCVDTVADYIAENLTKIRHTNVKCTFCSTQDTDEI 169

Query: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
             + +    I AS R DA+ +    LSRS    L       +N      +   L+ GD+ 
Sbjct: 170 QIKKEPLHIIAASARADAVTATITGLSRSSTSLLFREKKFSLNNRLYENSSYQLKPGDVF 229

Query: 294 SVSGKGRIKIGEINS-TRKGKFAVELIQYL 322
           S+ G G+ +  E  S TRKG+  +EL++Y+
Sbjct: 230 SIRGYGKYEFVETGSATRKGRLNIELLRYI 259


>gi|418324603|ref|ZP_12935837.1| S4 domain protein [Staphylococcus pettenkoferi VCU012]
 gi|365225290|gb|EHM66535.1| S4 domain protein [Staphylococcus pettenkoferi VCU012]
          Length = 259

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 11/197 (5%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           GGY  AER R  +  P     +PDI    V  + +T    F    H   LG+I+  GI R
Sbjct: 64  GGY-HAERQRAIIA-PSYY--EPDIEDFEVVLIEVTYPKKFVTIQHQHVLGTIMSMGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           E++GDI++   +  QF++  +L  Y++  L ++   +V    IP   +       K+F  
Sbjct: 120 EQLGDILVN--ETIQFVLAKQLESYMMLELTRIKGATVKLNSIPFKDMIQSKEEWKAFHA 177

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             ++LR+D +     + SRS    LI    V+VN   V      L  GD++S+ G GR +
Sbjct: 178 TVSALRLDVVLKEMIRKSRSIAKQLIEKKRVKVNHVIVDSVNFQLDVGDLLSIQGFGRAR 237

Query: 303 IGEI-NSTRKGKFAVEL 318
           I ++   T+K K  ++ 
Sbjct: 238 ITDVGGKTKKDKVHIQF 254


>gi|449984140|ref|ZP_21818857.1| hypothetical protein SMU52_01774 [Streptococcus mutans NFSM2]
 gi|449180608|gb|EMB82761.1| hypothetical protein SMU52_01774 [Streptococcus mutans NFSM2]
          Length = 262

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V+   IP           K    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKATVAFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|326693772|ref|ZP_08230777.1| S4 domain-containing protein [Leuconostoc argentinum KCTC 3773]
          Length = 263

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +A L I     F    H   LG+++  GI R  +GDI+ Q ++  Q +V  ++  Y+  +
Sbjct: 92  LAVLEINYPTKFTELHHAAILGALMHAGIKRTVVGDILGQDQRW-QIIVDSKMLTYIQQT 150

Query: 212 LEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           +  +G V ++   +PL  A+  +    ++F T+  SLR+DA+ +A F + RS    LI+ 
Sbjct: 151 VTMIGRVKITWMVLPLTQAITAQDDWEETF-TLLPSLRLDAVIAATFDIPRSLAKTLITQ 209

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
             VR+NW T  K   T+  GD++SV   GR+K+  ++   K
Sbjct: 210 QQVRLNWVTQAKPDHTVEIGDLISVRKYGRVKLAILDGYSK 250


>gi|377557353|ref|ZP_09787003.1| hypothetical protein PS3_20614 [Lactobacillus gastricus PS3]
 gi|376165759|gb|EHS84700.1| hypothetical protein PS3_20614 [Lactobacillus gastricus PS3]
          Length = 261

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 5/237 (2%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           I++++  LE  R     R +L + FL P         + +   +K    GG+  AE  R 
Sbjct: 18  IDQIQDWLETVR--DQYRPIL-TWFLNPRQRYILTTMVNQDDQIKVAFNGGFANAEMQRA 74

Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
            +        D D  +  L+I     F    H   +GS+L +GI R   GDI++  ++  
Sbjct: 75  LIFPDYYQPQDSDFELQLLTIDYPRKFAELHHRQIMGSLLSSGIDRNVFGDILVH-DQDW 133

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q +V  ++  Y+   + +VG + +S     + A+       +   T   SLR+DA+ +  
Sbjct: 134 QVIVDTKMVTYIQGQVTQVGKIHISFLPQAMSAVIQSQSDWEELSTTVVSLRLDAIVATA 193

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 313
           F  SR++   +I +G VRVNW  V++   T+   D +SV   GR+++  +N   K +
Sbjct: 194 FNYSRNRAKLVIEHGLVRVNWQEVSRPDFTVAIFDQLSVRHAGRVQLQAVNGYNKKQ 250


>gi|442805086|ref|YP_007373235.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
           subsp. stercorarium DSM 8532]
 gi|442740936|gb|AGC68625.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
           subsp. stercorarium DSM 8532]
          Length = 265

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 8/205 (3%)

Query: 124 VAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGT 178
           V  GGY  A+R  L        PE +T D DI     I   +      +H D LG+ILGT
Sbjct: 63  VFYGGYEGAQRAVLIFLPDYIRPEEITDD-DINPLSCIRAKYSSVNSVTHRDILGAILGT 121

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           G+ RE IGDI++ G   +  +V+ E+  YL ++    G   +  + IPL  +     + K
Sbjct: 122 GLKREVIGDILVNGN-SSDIIVMKEVVPYLESNFSSAGKTKLEISVIPLSEIRIPEAKFK 180

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
                 ASLR+D++ S+ F +SR K    I  G V +N+    K    +  GD ++V G 
Sbjct: 181 IINDTVASLRLDSVVSSAFSVSREKAAEAIKAGRVFLNYLECNKTDKQVNEGDFITVRGM 240

Query: 299 GRIKIGEI-NSTRKGKFAVELIQYL 322
           G+  + ++   T KG+  V + +Y+
Sbjct: 241 GKAVLQQVGGKTGKGRIRVVIAKYI 265


>gi|319892185|ref|YP_004149060.1| hypothetical protein SPSINT_0896 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161881|gb|ADV05424.1| hypothetical protein, contains S4- like RNA binding domain protein
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 256

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 5/240 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E++ ++L+  R+A ++   + + FL P       + +    D+     GG   AERCR  
Sbjct: 13  EQIDYLLDKVRQAETQYAPVLTYFLDPRGQYMLEVIVGSFNDLHVSFDGG-RDAERCRAV 71

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +       S  D  +A + I     F    H   LG+++  GI RE++GDII+   +  Q
Sbjct: 72  IAPSYYEPSRDDFELALIEIDYPTKFVTLQHQHVLGTLMSLGIEREQVGDIIVA--ERIQ 129

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           F++  +L  Y++  L ++   ++    IP   +       ++ +   ++ R+D +     
Sbjct: 130 FVLTKQLESYIMLELTRIKGATIKLHVIPFEDMIQSEEYWETHEATVSATRLDVVLKEMI 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
           + SR+     I    V+VN T +      L  GD++S+ G GR KI EI N T+K K  +
Sbjct: 190 RKSRTIAKTHIQRKRVKVNHTLIEAADFQLEAGDLLSIQGYGRAKITEIGNRTKKDKLRI 249


>gi|401682237|ref|ZP_10814131.1| S4 domain protein [Streptococcus sp. AS14]
 gi|400184673|gb|EJO18911.1| S4 domain protein [Streptococcus sp. AS14]
          Length = 261

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 85  LEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG- 140
           LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  R+ V  
Sbjct: 21  LELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELARVLVAP 76

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFL 199
               L  D   ++ L I+    F    H   +G++L   GI R   GDI++ G++ AQ  
Sbjct: 77  SYYQLNMDDFELSLLEISYASKFYKIIHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLF 135

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           V   LA Y I  + KV  + V    +       E  ++ + + + +SLR+D L ++ FKL
Sbjct: 136 VDKRLAQYFIDHVTKVAKMPVKLKEVSFAEQLKEQKQSVTREILASSLRLDKLVASTFKL 195

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAV 316
           SRS+   LIS   V++N+         +   D++SV   GR K+   N   K    K  V
Sbjct: 196 SRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTV 255

Query: 317 ELI 319
           EL+
Sbjct: 256 ELL 258


>gi|414157071|ref|ZP_11413371.1| hypothetical protein HMPREF9186_01791 [Streptococcus sp. F0442]
 gi|410868387|gb|EKS16352.1| hypothetical protein HMPREF9186_01791 [Streptococcus sp. F0442]
          Length = 263

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 13/250 (5%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYP 130
           +++  E +   +E++ R   R  V  + FL P      +  L  +A    ++  A     
Sbjct: 11  NRDDHEFIDRCIELSERVIERYSVEVTGFLNP----HQVAILRNVASSYQLQVFASSDEQ 66

Query: 131 QAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGD 187
           + E  ++ VG P+    DP+   +A L +     F   +H   LG+I+   G+ R+  GD
Sbjct: 67  KMEYAKVIVG-PDYYQLDPNDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGD 125

Query: 188 IILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL 247
           I L  +   Q  V      Y +  ++K+  V V    +PL         ++    + +S 
Sbjct: 126 I-LTSDGKIQVFVERRFVPYFMDHIQKISRVPVKLKEVPLSQQLVIEEDSQHRDILVSSF 184

Query: 248 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEI 306
           R+D + +A FKLSRS+   L+S+G V+VN+ T T +   +   D+VSV   GR+K + E 
Sbjct: 185 RLDKVIAATFKLSRSQASQLVSSGLVKVNYATTTNSSYAVDLNDLVSVRRFGRLKMVSEN 244

Query: 307 NSTRKGKFAV 316
             ++ GK+ V
Sbjct: 245 GISKSGKYKV 254


>gi|449920190|ref|ZP_21798378.1| hypothetical protein SMU21_05496 [Streptococcus mutans 1SM1]
 gi|449158983|gb|EMB62381.1| hypothetical protein SMU21_05496 [Streptococcus mutans 1SM1]
          Length = 262

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP        P  +    + +S+R+D + +A  KLSR +   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQPHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|295105662|emb|CBL03206.1| Uncharacterized conserved protein, contains S4-like domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 272

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 13/250 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKL--ADVKAVAQ--GGYPQAERCR 136
           ++HI ++A  A SR    +S FL+    +E  +A   L  A V+   +  GG+P+AER  
Sbjct: 27  MRHIEDLADAAFSRGIARYSAFLSD---REQDLARAALGRAGVRDGWRFDGGWPEAERRV 83

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-G 195
           L +    +    P     L      G    +H D+LGS++G  + RE +GDI+L  +  G
Sbjct: 84  LCLEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALGDILLPADAPG 143

Query: 196 AQFLVVPELADYLIT-SLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDAL 252
             ++   E A  LI   L + G + VS TR+  P     +  P  +      +SLR+DA+
Sbjct: 144 TAYVFALEPAAKLICRELCQAGRIEVS-TRLLEPEEIPAFPAPERQLLTATVSSLRLDAV 202

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
            SA   +SR     LI  G V +N   V K    +   D+ +V GKGR ++  +   ++K
Sbjct: 203 LSAMLHVSRGTAAELIEAGRVEINHLPVEKPHAPVYEQDVFTVRGKGRFRLTALPGKSKK 262

Query: 312 GKFAVELIQY 321
            +  +E  QY
Sbjct: 263 DRSIIEFFQY 272


>gi|422846174|ref|ZP_16892857.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK72]
 gi|325688225|gb|EGD30244.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK72]
          Length = 261

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 13/249 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           E +   LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  
Sbjct: 15  EFIDRSLELFQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70

Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
           ++ V      L  D   ++ L I+    F   SH   +G++L   GI R   GDI++ G+
Sbjct: 71  KVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGD 130

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
             AQ  V   LA Y I  + K+  + V    +       E  +  + + + +SLR+D L 
Sbjct: 131 -CAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAATREILASSLRLDKLV 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG- 312
           ++ FKLSRS+   LIS   V++N+         +   D++SV   GR K+   N   K  
Sbjct: 190 ASTFKLSRSQATQLISGKHVKMNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNG 249

Query: 313 --KFAVELI 319
             K  VEL+
Sbjct: 250 KHKLTVELL 258


>gi|384045140|ref|YP_005493157.1| RNA-binding S4 domain-containing protein [Bacillus megaterium
           WSH-002]
 gi|345442831|gb|AEN87848.1| RNA-binding S4 domain protein [Bacillus megaterium WSH-002]
          Length = 257

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 94  RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
           + +VLH      +DFL P   +     +    +V+    GG P AER R ++ +P+    
Sbjct: 22  KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80

Query: 148 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
             +         N+   F    H   LGS +  G+ R K GDI++ G+   Q +V  E++
Sbjct: 81  QSEDFQLCMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVVAEEIS 139

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
            Y+  +L  +G   VS + I    L              +S+R+D L S    LSR K+ 
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELIEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
             I+NG V+VN+  + +       GDI+S+ G GR +I  +   T+K K+ +
Sbjct: 200 PFIANGAVKVNFKVIEQPSFECHEGDILSLRGHGRSRIVSLEGKTKKEKWRI 251


>gi|422852130|ref|ZP_16898800.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK150]
 gi|325694117|gb|EGD36035.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK150]
          Length = 261

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 10/210 (4%)

Query: 117 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
           K  DV+  A   +  +E  R+ V      L  D   ++ L I+    F   SH   +G++
Sbjct: 52  KQYDVQVFASTDFFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111

Query: 176 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 234
           L   GI R   GDI++ G++ AQ  V   LA Y I  + K+  + V    +       E 
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQ 170

Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DI 292
            +  + + + +SLR+D L ++ FKLSRS+   LIS   V+VN+     +  +L+ G  D+
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKVNYA--VNDNPSLQVGLEDL 228

Query: 293 VSVSGKGRIKIGEINSTRKG---KFAVELI 319
           +SV   GR K+   N   K    K  VEL+
Sbjct: 229 ISVRRFGRFKVLRENGLSKNGKHKLTVELL 258


>gi|333448148|ref|ZP_08483090.1| S4 domain-containing protein [Leuconostoc inhae KCTC 3774]
          Length = 257

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 1/152 (0%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +A L I     F    H   LG+ +  GI RE IGDI L  +K  Q +V  ++  Y+  +
Sbjct: 92  LAVLEIKYPVKFAELHHSMILGAFMSAGIKREVIGDI-LSNDKKWQVIVDAKMITYIQQT 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++K+G + +      L  +            + +SLR+D   S  F +SRS   +LI   
Sbjct: 151 VQKIGRIKIELIARDLKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNISRSVAKSLIEQQ 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            VRVNWTT+ K    +  GDIVSV   GR+++
Sbjct: 211 QVRVNWTTIVKPDHVVAMGDIVSVRKYGRLQL 242


>gi|24379037|ref|NP_720992.1| hypothetical protein SMU_556 [Streptococcus mutans UA159]
 gi|24376932|gb|AAN58298.1|AE014900_6 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 263

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 38  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 93  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           K    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 152 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 212 KLNYLVQPKVSQLIDIGDLISVRGYGRFTISRDNGLSKG 250


>gi|340355069|ref|ZP_08677762.1| S4 domain-containing protein YlmH [Sporosarcina newyorkensis 2681]
 gi|339622750|gb|EGQ27264.1| S4 domain-containing protein YlmH [Sporosarcina newyorkensis 2681]
          Length = 261

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 17/226 (7%)

Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 155
           ++FL P    + ES++   + +D+   ++GG+P AER R+ + +P+  T S+ D  ++  
Sbjct: 38  TEFLDPRQRFITESIV---RNSDLVIASEGGFPDAERKRVLI-YPDYYTPSEDDFQISFY 93

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            +     F    H   LGS+L  GI R + GDI +  E+  QF V  E+++Y+  +  +V
Sbjct: 94  QVQYPQKFVNMKHSQLLGSLLSLGIDRSRFGDIRI-TEEAVQFAVTAEVSEYIHVNFTQV 152

Query: 216 GNVSVSCTRIPLL----ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           G V VS    P+L     ++ +   T+    I +SLR+D + ++  K SR+K  +LI   
Sbjct: 153 GKVKVSIQ--PVLNADDVIDVQEEWTEEMHII-SSLRLDTVVASLAKCSRAKASSLIKGE 209

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAV 316
            V+VNW  + +    +   DI+SV G GR K IG    TRK K  V
Sbjct: 210 KVKVNWAIIDQQAFEVEEQDILSVRGFGRYKIIGIEGRTRKDKIRV 255


>gi|325845150|ref|ZP_08168459.1| S4 domain protein [Turicibacter sp. HGF1]
 gi|325488815|gb|EGC91215.1| S4 domain protein [Turicibacter sp. HGF1]
          Length = 255

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 157
           + FLT    +   M + + ++V+   +GG+ +AER R ++ +P+ L  +     V    I
Sbjct: 32  TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
             N       H   LGS+    I R  IGDI++         +  E +++ +    KVG 
Sbjct: 91  EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVILSNGRIYLAICEEFSEFFLQHFHKVGK 150

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            S+      +   E +  +   F+ I +S+R+D + ++  K+SRS++   I    V+VNW
Sbjct: 151 HSILIKESSISQFE-KIDQEDEFEIIISSMRLDVIVASLMKVSRSQVHEYIMQAGVQVNW 209

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
                +    + GD++S+   GR ++  + S T+  +F +
Sbjct: 210 VIEQNHSRICQIGDVLSIKRHGRFRLKVLKSRTKSERFVI 249


>gi|209559680|ref|YP_002286152.1| hypothetical protein Spy49_1169c [Streptococcus pyogenes NZ131]
 gi|209540881|gb|ACI61457.1| hypothetical protein Spy49_1169c [Streptococcus pyogenes NZ131]
          Length = 263

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ L
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLL 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|386363047|ref|YP_006072378.1| hypothetical protein SPYALAB49_001227 [Streptococcus pyogenes
           Alab49]
 gi|350277456|gb|AEQ24824.1| hypothetical protein SPYALAB49_001227 [Streptococcus pyogenes
           Alab49]
          Length = 263

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    I    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREINFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|399517498|ref|ZP_10759048.1| hypothetical protein, contains S4-like RNA binding domain
           [Leuconostoc pseudomesenteroides 4882]
 gi|398647622|emb|CCJ67075.1| hypothetical protein, contains S4-like RNA binding domain
           [Leuconostoc pseudomesenteroides 4882]
          Length = 265

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ +L+  ++A     ++ + FL P         + + + +++   GG   AE  R  + 
Sbjct: 20  IQQVLDWVKQADDDYRLILTRFLNPREQYILQTLINRQSGLRSYLYGGVDGAESQRAIIA 79

Query: 141 HPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQ 197
            PE       D  +  L++     F    H   LGS++  GI+R+ +GDI+   E+   Q
Sbjct: 80  -PEVFEVKQEDFEIGLLTVQYPKKFATLHHSTILGSLMHLGISRDVLGDILFDNEETNWQ 138

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAG 256
            +V  ++  Y+  ++ KVG V+V+     L  AL       + F  + +SLR+D + S+ 
Sbjct: 139 IIVDQKMLAYIQQTVTKVGRVAVNLKAQSLSEALPVLTNWQEQF-ALMSSLRLDVVISSV 197

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
           F+LSRS    LI +G V VNW    K    +   D++SV   GR +I  ++   K
Sbjct: 198 FQLSRSDTKTLIESGQVHVNWMLAQKTNLEIAVNDLISVRKHGRAQIKSLDGRSK 252


>gi|403745293|ref|ZP_10954231.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
           URH17-3-68]
 gi|403121521|gb|EJY55814.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
           URH17-3-68]
          Length = 256

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
           +K + + A    +R     +DFLTP   +E  +A         V    GGY  AER R+ 
Sbjct: 15  LKQVEDWAAHVHARGTWYLTDFLTP---RERWIAESAARHSGLVTSDFGGYTDAERVRML 71

Query: 139 V----GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
           +     HPEA  SD DI   L+IT     QP  H D LGS+LG GI R+ +GDI +  +K
Sbjct: 72  LMPEDWHPEA--SDYDI-KCLAITALE--QPIRHRDVLGSVLGLGIQRKTVGDIAVFDQK 126

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDA 251
            A       +  +L   L +VG   V    +   P L     PP  +       S R+DA
Sbjct: 127 RAYVFATSAMGSFLARELHRVGRGVVEVVLLEDPPQLP----PPAYEEQDIFVMSPRIDA 182

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTR 310
           + +    LSR+     ++ G V +N+         +R GDI+SV G GRI++ E + ++R
Sbjct: 183 IVAQACHLSRANAQEHVARGYVSLNFVEAVAR-DEVRPGDILSVRGFGRIRVVEAVGTSR 241

Query: 311 KGKFAVEL 318
            G+  + +
Sbjct: 242 SGRIRMRI 249


>gi|300173567|ref|YP_003772733.1| S4 domain-containing protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887946|emb|CBL91914.1| S4 domain protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 263

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 1/152 (0%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +A L I     F    H   LG+ +  GI RE IGDI L  +K  Q +V  ++  Y+  +
Sbjct: 92  LAVLEIKYPVKFAELHHSMILGAFMSAGIKREVIGDI-LSNDKKWQVIVDAKMITYIQQT 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++K+G + +      L  +            + +SLR+D   S  F +SRS   +LI   
Sbjct: 151 VQKIGRIKIELIARDLKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNISRSVAKSLIEQQ 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            VRVNWTT+ K    +  GDIVSV   GR+++
Sbjct: 211 QVRVNWTTIVKPDHVVAMGDIVSVRKYGRLQL 242


>gi|15675416|ref|NP_269590.1| RNA binding protein [Streptococcus pyogenes SF370]
 gi|71911058|ref|YP_282608.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
 gi|410680912|ref|YP_006933314.1| hypothetical protein A20_1279c [Streptococcus pyogenes A20]
 gi|13622604|gb|AAK34311.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71853840|gb|AAZ51863.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
 gi|395454299|dbj|BAM30638.1| RNA binding protein [Streptococcus pyogenes M1 476]
 gi|409693501|gb|AFV38361.1| hypothetical protein A20_1279c [Streptococcus pyogenes A20]
          Length = 263

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|418039120|ref|ZP_12677429.1| hypothetical protein LLCRE1631_02236 [Lactococcus lactis subsp.
           cremoris CNCM I-1631]
 gi|354692480|gb|EHE92303.1| hypothetical protein LLCRE1631_02236 [Lactococcus lactis subsp.
           cremoris CNCM I-1631]
          Length = 219

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 5/174 (2%)

Query: 147 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 205
            D DI   L I     F   SH   LG+ LG  G+ R+++GDII+   K  Q  V   L 
Sbjct: 41  EDFDI-CLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 98

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
           +    ++EK+G  ++    I L  L  E  +      +  +LRVD + +  FK+SR+   
Sbjct: 99  ESF-KAIEKIGRAAIKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 157

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
           N++ +  V+VN+  + K   ++   D++SV G GRIKI  I + T+KGK  VE+
Sbjct: 158 NMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILDFTKKGKQRVEI 211


>gi|387786614|ref|YP_006251710.1| hypothetical protein SMULJ23_1433 [Streptococcus mutans LJ23]
 gi|379133015|dbj|BAL69767.1| hypothetical protein SMULJ23_1433 [Streptococcus mutans LJ23]
          Length = 263

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 38  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 93  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           K    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 152 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 212 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 250


>gi|290890673|ref|ZP_06553743.1| hypothetical protein AWRIB429_1133 [Oenococcus oeni AWRIB429]
 gi|419758702|ref|ZP_14285016.1| cell division protein [Oenococcus oeni AWRIB304]
 gi|421195618|ref|ZP_15652823.1| cell division protein [Oenococcus oeni AWRIB568]
 gi|421197730|ref|ZP_15654902.1| cell division protein [Oenococcus oeni AWRIB576]
 gi|290479648|gb|EFD88302.1| hypothetical protein AWRIB429_1133 [Oenococcus oeni AWRIB429]
 gi|399904532|gb|EJN91986.1| cell division protein [Oenococcus oeni AWRIB304]
 gi|399974782|gb|EJO08865.1| cell division protein [Oenococcus oeni AWRIB576]
 gi|399975448|gb|EJO09500.1| cell division protein [Oenococcus oeni AWRIB568]
          Length = 256

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 16/244 (6%)

Query: 64  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLT---PPVLKESMMALEKLAD 120
           NFD  L    D   I   K +L+   +A  +       FLT    P  ++ ++ L K   
Sbjct: 3   NFDVNLNHYSDAEKIF-AKQVLDWFFQADEK------SFLTVFLNPQEQKILLELAKQIG 55

Query: 121 VKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
                 GGY +AE  R  +G H E   +D  I + L +     +    H   LGS+L  G
Sbjct: 56  FSVRFGGGYQRAENKRALIGDHKE---NDFQI-SLLQLNYASHYVHLHHSTVLGSLLHHG 111

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I+ ++IGD+I + +   Q L+   LAD+++ ++++  +  ++  +I    +       K 
Sbjct: 112 ISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKITFEKISFEKILNPQSDEKE 170

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
            + + +S R+D L S  +  SR+   +LI  G V VNW          + GD+VS  G G
Sbjct: 171 KEIVISSQRIDLLISQIYNFSRAHAKDLIETGQVMVNWFEKDNTSYLAKLGDVVSTHGYG 230

Query: 300 RIKI 303
           RI++
Sbjct: 231 RIRL 234


>gi|317495383|ref|ZP_07953752.1| S4 domain-containing protein [Gemella morbillorum M424]
 gi|316914442|gb|EFV35919.1| S4 domain-containing protein [Gemella morbillorum M424]
          Length = 256

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 9/223 (4%)

Query: 102 FLT---PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSIT 158
           FLT     +LK+ +M     +D+     GG   AER +  +   E    D +I   L   
Sbjct: 37  FLTNFEQVILKKIIMY--NYSDMSIDFFGGTADAERKKAKIIANEYYDIDYEI-TCLRAN 93

Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 218
            N  F    H D LG++   GI   +IGDI++  E+     V  E+ADY++  L K+G +
Sbjct: 94  YNNKFDKIQHRDVLGAVHNMGINFNRIGDIVVL-EREIYIFVDYEIADYIMMQLTKIGRI 152

Query: 219 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           ++   +I L+ +  E    + F  + +S R+D+L +     SRSK+   +    +++N +
Sbjct: 153 NLQFEKIDLVEVNIEKE-YEEFDIVSSSFRLDSLVAKITNKSRSKVKEFLEQEFIKLNHS 211

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG-KFAVELIQ 320
            +         GD++S+   GR  + E    +K  K+ +++++
Sbjct: 212 VIKNGEKNCVNGDVISIRKYGRFILKEYTQNKKSLKYRIKVLK 254


>gi|397649283|ref|YP_006489810.1| hypothetical protein SMUGS5_02445 [Streptococcus mutans GS-5]
 gi|449863370|ref|ZP_21778216.1| hypothetical protein SMU101_01210 [Streptococcus mutans U2B]
 gi|449870286|ref|ZP_21780576.1| hypothetical protein SMU10_03291 [Streptococcus mutans 8ID3]
 gi|449908651|ref|ZP_21793875.1| hypothetical protein SMU109_02338 [Streptococcus mutans OMZ175]
 gi|449996502|ref|ZP_21823564.1| hypothetical protein SMU54_05838 [Streptococcus mutans A9]
 gi|392602852|gb|AFM81016.1| hypothetical protein SMUGS5_02445 [Streptococcus mutans GS-5]
 gi|449156828|gb|EMB60286.1| hypothetical protein SMU10_03291 [Streptococcus mutans 8ID3]
 gi|449183007|gb|EMB85006.1| hypothetical protein SMU54_05838 [Streptococcus mutans A9]
 gi|449262788|gb|EMC60231.1| hypothetical protein SMU109_02338 [Streptococcus mutans OMZ175]
 gi|449265099|gb|EMC62428.1| hypothetical protein SMU101_01210 [Streptococcus mutans U2B]
          Length = 262

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           K    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|293376233|ref|ZP_06622476.1| S4 domain protein [Turicibacter sanguinis PC909]
 gi|292645125|gb|EFF63192.1| S4 domain protein [Turicibacter sanguinis PC909]
          Length = 255

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 157
           + FLT    +   M + + ++V+   +GG+ +AER R ++ +P+ L  +     V    I
Sbjct: 32  TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
             N       H   LGS+    I R  IGDI++         +  E +++ +    KVG 
Sbjct: 91  EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVVLSNGRIYLAICEEFSEFFLQHFHKVGK 150

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
            S+      +   E +  +   F+ I +S+R+D + ++  K+SRS++   I    V+VNW
Sbjct: 151 HSILIKESSISQFE-KIDQEDEFEIIISSMRLDVIVASLMKVSRSQVHEYIMQAGVQVNW 209

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
                +    + GD++S+   GR ++  + S T+  +F +
Sbjct: 210 VIEQNHSRICQIGDVLSIKRHGRFRLKVLKSRTKSERFVI 249


>gi|407477643|ref|YP_006791520.1| S4 domain-containing protein [Exiguobacterium antarcticum B7]
 gi|407061722|gb|AFS70912.1| S4 domain protein [Exiguobacterium antarcticum B7]
          Length = 257

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 20/228 (8%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSVG--HPEALTSDPDIVAALS 156
           +DFL P   +E  +  E +    A+  +GG+  AER R  +   + +   +D DI A   
Sbjct: 34  TDFLDP---REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYDLDANDFDI-AIYR 89

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F   SH    G++L  G+ R K GD+++Q ++  QF V  E++ Y+  ++E+ G
Sbjct: 90  IHYPTKFVELSHRQVTGTLLNVGLKRGKFGDVVIQ-DQVVQFAVAKEVSSYIEANVERAG 148

Query: 217 NVSVSCTRIPLLALEYEPP-RTKSFKTIE-----ASLRVDALASAGFKLSRSKLVNLISN 270
                 T+I L  +++E   +TK  +  E     +SLR D + S     SR K  +LI  
Sbjct: 149 K-----TKIRLSVVDFEEQLKTKEQEWQEELGFVSSLRFDTVVSEILGFSRQKAQSLIKQ 203

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVE 317
           G+ +VN+  V      L  GD++S+ G GR+K I  + ST++ +  ++
Sbjct: 204 GESKVNYKIVEDPSFLLEEGDLLSLRGTGRVKLIAVLGSTKRDRIKLQ 251


>gi|50914612|ref|YP_060584.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
 gi|50903686|gb|AAT87401.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
          Length = 263

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNEVTKHGKQKITL 257


>gi|440781913|ref|ZP_20960141.1| RNA binding protein [Clostridium pasteurianum DSM 525]
 gi|440220631|gb|ELP59838.1| RNA binding protein [Clostridium pasteurianum DSM 525]
          Length = 258

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 5/208 (2%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDPDIVAAL 155
           +  ++F T  +  E +  L  L  VK    G +  +ER  ++  +  +     P  +  +
Sbjct: 35  IYTNEFYTTDICIE-VKKLSTLLGVKIETYGIFENSERNMMAFSYEGDNYCYFP--LKLI 91

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            I     F   SH D+LG+I+  G+ R K GD+I+  E      V  E+A Y++ +L  +
Sbjct: 92  KIENKSKFNKLSHKDYLGAIMSMGVNRNKFGDLIVI-ENSCYVAVSEEIASYILNNLNSI 150

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
           G  + +   + L        + +    I +SLR+D L S+   +SR++ V LI+ G+V +
Sbjct: 151 GKCTCNICELELTKSNIPKIKFEELNIIVSSLRLDCLISSICNISRNRAVELINRGNVLL 210

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           N+ T  +    +  G  +++ G G+ K+
Sbjct: 211 NYVTEKEKDYNVSFGSTITIRGYGKFKL 238


>gi|302380712|ref|ZP_07269177.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|303233951|ref|ZP_07320600.1| S4 domain protein [Finegoldia magna BVS033A4]
 gi|417926557|ref|ZP_12569954.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
           SY403409CC001050417]
 gi|302311655|gb|EFK93671.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302494876|gb|EFL54633.1| S4 domain protein [Finegoldia magna BVS033A4]
 gi|341588925|gb|EGS32295.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
           SY403409CC001050417]
          Length = 258

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 16/236 (6%)

Query: 95  REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-------GHPEALTS 147
           + +  +DF+ P  ++ ++  L    DV  +A    P+   C  S+        + E   +
Sbjct: 31  KTIYSTDFMNPKEIEYAISILNTETDVGYMATNC-PK--NCENSIIIMWDRYCYSEEYIN 87

Query: 148 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
             D +  L I  +   Q  SH D LG++L  GI REKIGDI     K         +  +
Sbjct: 88  MFDYIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHN-KRFYICATNTMIKF 143

Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267
           L  +L K+   ++S T I    +E +  + KSF  I  S R+D L S    +SR     +
Sbjct: 144 LNLNLTKIKKFNIS-TSIVDKNIEKDEEKYKSFTGIINSERLDCLVSEMANISRKDAQIM 202

Query: 268 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQYL 322
           I N  +++N+  ++    ++    +VS+ G GR ++ E + +T+K K  ++ I+Y+
Sbjct: 203 IKNKKIKLNYEVLSNTSKSVEENSLVSIRGYGRYRLIEYLGNTKKDKLRIKYIKYI 258


>gi|160945087|ref|ZP_02092313.1| hypothetical protein FAEPRAM212_02606 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442818|gb|EDP19823.1| S4 domain protein [Faecalibacterium prausnitzii M21/2]
          Length = 272

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 13/250 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKL--ADVKAVAQ--GGYPQAERCR 136
           ++HI ++A  A SR    +S FL+    +E  +A   L  A V+   +  GG+P+AER  
Sbjct: 27  MRHIEDLADAAFSRGIARYSAFLSD---REQDLARAALGRAGVRDGWRFDGGWPEAERRV 83

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-G 195
           L +    +    P     L      G    +H D+LGS++G  + RE +GDI+L  +  G
Sbjct: 84  LCLEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALGDILLPADAPG 143

Query: 196 AQFLVVPELADYLIT-SLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDAL 252
             ++   E A  LI   L + G   VS TR+  P     +  P  +      +SLR+DA+
Sbjct: 144 TAYVFALEPAAKLICRELCQAGRTEVS-TRLLEPEEIPAFPAPERQLLTATVSSLRLDAV 202

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
            SA   +SR     LI  G V +N   V K    +   D+ +V GKGR ++  +   ++K
Sbjct: 203 LSAMLHVSRGTAAELIEAGRVEINHLPVEKPHAPVYEQDVFTVRGKGRFRLTALPGKSKK 262

Query: 312 GKFAVELIQY 321
            +  +E  QY
Sbjct: 263 DRSIIEFFQY 272


>gi|21910704|ref|NP_664972.1| RNA binding protein [Streptococcus pyogenes MGAS315]
 gi|28895606|ref|NP_801956.1| RNA binding protein [Streptococcus pyogenes SSI-1]
 gi|56808756|ref|ZP_00366473.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
           [Streptococcus pyogenes M49 591]
 gi|94988870|ref|YP_596971.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
 gi|94992760|ref|YP_600859.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
 gi|383480270|ref|YP_005389164.1| hypothetical protein MGAS15252_1129 [Streptococcus pyogenes
           MGAS15252]
 gi|383494252|ref|YP_005411928.1| hypothetical protein MGAS1882_1190 [Streptococcus pyogenes
           MGAS1882]
 gi|417856571|ref|ZP_12501630.1| hypothetical protein SPYOHK_03505 [Streptococcus pyogenes HKU
           QMH11M0907901]
 gi|21904907|gb|AAM79775.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810855|dbj|BAC63789.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|94542378|gb|ABF32427.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
 gi|94544278|gb|ABF34326.1| RNA binding protein [Streptococcus pyogenes MGAS10270]
 gi|94546268|gb|ABF36315.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
 gi|378928260|gb|AFC66466.1| hypothetical protein MGAS15252_1129 [Streptococcus pyogenes
           MGAS15252]
 gi|378929979|gb|AFC68396.1| hypothetical protein MGAS1882_1190 [Streptococcus pyogenes
           MGAS1882]
 gi|387933526|gb|EIK41639.1| hypothetical protein SPYOHK_03505 [Streptococcus pyogenes HKU
           QMH11M0907901]
          Length = 263

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|433448683|ref|ZP_20411549.1| 30S ribosomal protein S4e [Weissella ceti NC36]
 gi|429539610|gb|ELA07646.1| 30S ribosomal protein S4e [Weissella ceti NC36]
          Length = 186

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 15/189 (7%)

Query: 142 PEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 199
           P+   S PD   +  L +  +  F    H   LG+++ +G+ RE  GDI++   +  Q  
Sbjct: 2   PDYYVSSPDDFEMTLLELEYSQKFATLQHRTILGAMVHSGLKRESFGDIVVDDNQRWQIA 61

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-----SLRVDALAS 254
           V   +A ++   L ++G       ++ L  +  E   T     +E+     SLR+D + +
Sbjct: 62  VSNHIAPFVQQDLTRMGR-----NKVKLKPVSAEQAITLVQDWVESDVTVTSLRLDTVVA 116

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRK 311
             ++LSR++   LI  G V+VNWT +T+   T+ T D++SV G GR++I +   I    K
Sbjct: 117 QAYRLSRTQAKELIERGLVKVNWTEITQADFTIATDDLLSVRGYGRVRITQNNGITKKEK 176

Query: 312 GKFAVELIQ 320
            +  + +IQ
Sbjct: 177 HRLTIAVIQ 185


>gi|300854254|ref|YP_003779238.1| RNA-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300434369|gb|ADK14136.1| putative RNA binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 257

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
           D++ I  +   + +A++ ++   V  S F TP V   ++  L+K   +   + G +  AE
Sbjct: 14  DESEILPIYDKISLAKKTNN--TVYTSTFYTPNVW-NTLENLKKEIGLNICSCGIFEDAE 70

Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           R +L       + + P  +  + I     F    H D+LG+++  G+ REK GD+IL+ +
Sbjct: 71  R-KLIAFSKFDIRNYP--IKLMEIKCKSKFVKLQHKDYLGALMALGLKREKFGDLILKED 127

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
           K     V  +++DY+  +L  VG  S     + + + E      K+     +SLR+D L 
Sbjct: 128 KQCYLAVCEDVSDYIEMNLNSVGKSSCKANVLDISSAEIPLYNFKTSVLNVSSLRIDCLV 187

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKG 312
           S+   +SR+K   +I  G V +++   T+   ++    I++V G G+ KI GE   T  G
Sbjct: 188 SSLCNVSRNKSQEMIKRGKVLLDYLPETRKDKSIEDNCIITVRGCGKFKIVGETGWTGSG 247

Query: 313 K 313
           +
Sbjct: 248 R 248


>gi|422881776|ref|ZP_16928232.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK355]
 gi|332363499|gb|EGJ41281.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK355]
          Length = 261

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 13/249 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
           E +   LE+ +R         + FL P    +LK     + K  DV+  A   Y  +E  
Sbjct: 15  EFIDRSLELLQRVQDTYAFETTSFLNPHQVSILKN----IGKQYDVQVFASSDYFPSELA 70

Query: 136 RLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
           R+ V      L  D   ++ L I+    F   SH   +G++L   GI R   GDI++  E
Sbjct: 71  RVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTLLNQLGIERRTFGDILV-IE 129

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALA 253
             AQ  V   LA Y I  + K+  + V    +       E  +  +   + +SLR+D L 
Sbjct: 130 DRAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQKQAVTRDILVSSLRLDKLV 189

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG- 312
           ++ FKLSRS+   LIS   V++N+         +   D++SV   GR K+   N   K  
Sbjct: 190 ASTFKLSRSQAAQLISGKHVKMNYAVNNNPSQQVGLEDLISVRRFGRFKVLRENGLSKNG 249

Query: 313 --KFAVELI 319
             K  VEL+
Sbjct: 250 KHKLTVELL 258


>gi|294501007|ref|YP_003564707.1| RNA binding protein [Bacillus megaterium QM B1551]
 gi|294350944|gb|ADE71273.1| RNA binding protein [Bacillus megaterium QM B1551]
          Length = 257

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 11/232 (4%)

Query: 94  RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
           + +VLH      +DFL P   +     +    +V+    GG P AER R ++ +P+    
Sbjct: 22  KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80

Query: 148 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 205
           + +         N+   F    H   LGS +  G+ R K GDI++ G+   Q +   E++
Sbjct: 81  ESEDFQLHMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVAAEEIS 139

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
            Y+  +L  +G   VS + I    L              +S+R+D L S    LSR K+ 
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELIEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
             I+NG V+VN+  + +       GDI+S+ G GR +I  +   T+K K+ +
Sbjct: 200 PFIANGAVKVNFKVIEQPSFECHEGDILSLRGHGRSRIVSLEGKTKKEKWRI 251


>gi|169824335|ref|YP_001691946.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
 gi|167831140|dbj|BAG08056.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
          Length = 258

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 16/236 (6%)

Query: 95  REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-------GHPEALTS 147
           + +  +DF+ P  ++ ++  L    DV  +A    P+   C  S+        + E   +
Sbjct: 31  KTIYSTDFMNPKEIEYAISILNTETDVGYMATNC-PK--NCENSIIIMWDRYCYSEEYIN 87

Query: 148 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207
             D +  L I  +   Q  SH D LG++L  GI REKIGDI     K         +  +
Sbjct: 88  MFDYIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHN-KRFYICATNTMIKF 143

Query: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267
           L  +L K+   ++S T I    +E +  + K F  I  S R+D L S    +SR     L
Sbjct: 144 LNLNLTKIKKFNIS-TSIVEKNIEKDEEKYKPFTGIINSERLDCLVSEMANISRKDAQIL 202

Query: 268 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQYL 322
           I N  +++N+  V+    ++    +VS+ G GR ++ E + +T+K K  ++ I+Y+
Sbjct: 203 IKNKKIKLNYEVVSNTSKSVEENSLVSIRGYGRYRLIEYLGNTKKDKLRIKYIKYI 258


>gi|313884820|ref|ZP_07818572.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619511|gb|EFR30948.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 262

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 11/225 (4%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
           S FLTP   +++M+  + +    DVK    GG   AER R  + +P+    +     + A
Sbjct: 38  SPFLTP---RQAMIVSQLVGTNEDVKVAFWGGCEGAERKRALI-YPQYYEVNEASFEIQA 93

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
            +I     F   +HG  LG+   TG+ R++ GDII  G      +V   + ++ ++++ K
Sbjct: 94  FNINFPLKFGQLTHGRILGTFTSTGVDRDRTGDIITDG-TSWHVIVDASMTEFYMSNITK 152

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           + NV V    I    +       +S   + +SLR+D L S  +  SR +  + I+ G V+
Sbjct: 153 IANVGVHLEPIASDEILQSDESWESVFLVASSLRLDTLLSKVYNFSRQRAKDAIAGGQVK 212

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           VN+  +T+    +   DIVS+   GR  I ++   T+K  + +++
Sbjct: 213 VNFIEMTRPDVVIGVEDIVSLRHYGRFWIKQVQGMTKKDNYKLQV 257


>gi|386319543|ref|YP_006015706.1| RNA-binding S4 domain-containing protein [Staphylococcus
           pseudintermedius ED99]
 gi|323464714|gb|ADX76867.1| RNA-binding S4 domain protein [Staphylococcus pseudintermedius
           ED99]
          Length = 256

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 5/240 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E++ ++L+  R+A ++   + + FL P       + +    D+     GG   AERCR  
Sbjct: 13  EQIDYLLDKVRQAETQYAPVLTYFLDPRGQYMLEVIVGSFNDLHVSFDGG-RDAERCRAV 71

Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
           +       S  D  +  + I     F    H   LG+++  GI RE++GDII+   +  Q
Sbjct: 72  IAPSYYEPSRDDFELTLIEIDYPTKFVTLQHQHVLGTLMSLGIEREQVGDIIVA--ERIQ 129

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 257
           F++  +L  Y++  L ++   ++    IP   +       ++ +   ++ R+D +     
Sbjct: 130 FVLTKQLESYIMLELTRIKGATIKLHVIPFEDMIQSEEYWETHEATVSATRLDVVLKEMI 189

Query: 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
           + SR+     I    V+VN T +      L  GD++S+ G GR KI EI N T+K K  +
Sbjct: 190 RKSRTIAKTHIQRKRVKVNHTLIEAADFQLEAGDLLSIQGYGRAKITEIGNRTKKDKLRI 249


>gi|71903846|ref|YP_280649.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
 gi|71802941|gb|AAX72294.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
          Length = 263

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)

Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 155
           ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+ +   SD  I A +
Sbjct: 38  TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 213
            I+    F   +H   LG+++   G+ R   GD+ +  E G AQ ++  EL DY + ++ 
Sbjct: 94  EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+   SV    +    L      +++   + +S R+D + +   K SR++++ LI    +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           +VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|315283065|ref|ZP_07871338.1| S4 domain-containing protein, partial [Listeria marthii FSL S4-120]
 gi|313613292|gb|EFR87163.1| S4 domain-containing protein [Listeria marthii FSL S4-120]
          Length = 163

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 163 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 222
           F   +H   LG+++  G+ R+  GDI L  +   Q LV   + DYL   LEKVG V+V  
Sbjct: 4   FTTLTHQKILGTLMSLGMKRDIFGDI-LNKDTEWQLLVESSMKDYLTLQLEKVGKVNVML 62

Query: 223 TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTK 282
               L    Y P   +      +S+R+D + S    +SR K   L+  G V+VNW TV  
Sbjct: 63  EETELANAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNWKTVEN 122

Query: 283 NGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 322
                   D++S  G GR+K+      T+K K  +E I YL
Sbjct: 123 PDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIE-IGYL 162


>gi|419778746|ref|ZP_14304633.1| S4 domain protein [Streptococcus oralis SK10]
 gi|383187168|gb|EIC79627.1| S4 domain protein [Streptococcus oralis SK10]
          Length = 263

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +A    G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAAVLTPFINPHQEQILRVLAGTYGLACQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEIALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQGGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ E N  T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVEDNGQTKKDK 252


>gi|94994748|ref|YP_602846.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
 gi|94548256|gb|ABF38302.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
          Length = 263

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L       ++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNNQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           SR++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 SRTQVIALIEANKIKVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|381183326|ref|ZP_09892070.1| S4 domain protein, partial [Listeriaceae bacterium TTU M1-001]
 gi|380316771|gb|EIA20146.1| S4 domain protein, partial [Listeriaceae bacterium TTU M1-001]
          Length = 216

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           +  ILE+  + +       +DFL P         +    +++    GG P  ER R ++ 
Sbjct: 16  IDQILEITMQVTDEYTPKLTDFLDPRQRFIVQTIIGGYDNIEVAFSGGTPFTERKR-ALI 74

Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
           +P+  T  D D  +    I     F   SH   LG+++  GI R+  GDI+  G++  QF
Sbjct: 75  YPDYYTPEDEDFNLTLFHIRYPVKFTTLSHQKILGTLMSLGIKRDIFGDIVNLGDEW-QF 133

Query: 199 LVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGF 257
               E+ +Y++  L+K+G V++   + PL  AL+ E   T    T  +SLR+D++ +   
Sbjct: 134 FADAEMENYILNQLDKIGKVNIMLEKWPLDEALQVEQVWTGEMIT-ASSLRLDSIIANAL 192

Query: 258 KLSRSKLVNLISNGDVRVNWTTV 280
            LSR K+  +I    V+VNW  V
Sbjct: 193 HLSRQKVKQMIQAKLVKVNWKVV 215


>gi|450000066|ref|ZP_21824911.1| hypothetical protein SMU56_03254 [Streptococcus mutans N29]
 gi|450078231|ref|ZP_21850915.1| hypothetical protein SMU75_07403 [Streptococcus mutans N3209]
 gi|449186310|gb|EMB88149.1| hypothetical protein SMU56_03254 [Streptococcus mutans N29]
 gi|449210280|gb|EMC10750.1| hypothetical protein SMU75_07403 [Streptococcus mutans N3209]
          Length = 262

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNVQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|339624591|ref|ZP_08660380.1| hypothetical protein FfruK3_04010 [Fructobacillus fructosus KCTC
           3544]
          Length = 264

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 14/249 (5%)

Query: 59  QAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKL 118
           QAV  +FDD  +          V  +L+   +AS   +++ + FL P       + +   
Sbjct: 5   QAVAQHFDDEERAF--------VAQVLDWLTQASQDYQLVLTHFLNPRERHIVSIIVGDR 56

Query: 119 ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFG--FQPCSHGDFLGSIL 176
            D++  + G + +AE+ RL +  PE           L +   F   F    H D LG++L
Sbjct: 57  TDIQVRSYGIFDRAEKKRLVIA-PEFFEVGRQDFEELLLQIRFAKKFINLRHKDLLGALL 115

Query: 177 GTGIAREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEP 234
             G+ R  IGDI++  + G AQ  V      +L  +++++G   V   ++    AL    
Sbjct: 116 AAGVNRSVIGDIVVDQDLGLAQLAVEKSHQIFLTQTVDQIGKAKVHFEQVADSKALVPAV 175

Query: 235 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 294
              + F  I  SLR+DA+ +A F +SR+++  +IS G V VNW         +   D+VS
Sbjct: 176 DEEERFVLI-PSLRLDAVIAACFGISRTQVSEMISRGFVSVNWVKNDDASRLMHRQDVVS 234

Query: 295 VSGKGRIKI 303
           V   GRI++
Sbjct: 235 VRKYGRIRL 243


>gi|449887873|ref|ZP_21787103.1| hypothetical protein SMU104_07220 [Streptococcus mutans SA41]
 gi|449893788|ref|ZP_21788934.1| hypothetical protein SMU105_06710 [Streptococcus mutans SF12]
 gi|449916113|ref|ZP_21796665.1| hypothetical protein SMU20_06491 [Streptococcus mutans 15JP3]
 gi|449991914|ref|ZP_21822090.1| hypothetical protein SMU53_08196 [Streptococcus mutans NVAB]
 gi|450041211|ref|ZP_21837265.1| hypothetical protein SMU63_07095 [Streptococcus mutans T4]
 gi|450117360|ref|ZP_21864966.1| hypothetical protein SMU83_08453 [Streptococcus mutans ST1]
 gi|449155604|gb|EMB59109.1| hypothetical protein SMU20_06491 [Streptococcus mutans 15JP3]
 gi|449180385|gb|EMB82543.1| hypothetical protein SMU53_08196 [Streptococcus mutans NVAB]
 gi|449197940|gb|EMB99076.1| hypothetical protein SMU63_07095 [Streptococcus mutans T4]
 gi|449226359|gb|EMC25901.1| hypothetical protein SMU83_08453 [Streptococcus mutans ST1]
 gi|449252005|gb|EMC49998.1| hypothetical protein SMU104_07220 [Streptococcus mutans SA41]
 gi|449255693|gb|EMC53538.1| hypothetical protein SMU105_06710 [Streptococcus mutans SF12]
          Length = 262

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|449941901|ref|ZP_21805728.1| hypothetical protein SMU3_03044 [Streptococcus mutans 11A1]
 gi|449969794|ref|ZP_21813436.1| hypothetical protein SMU41_03212 [Streptococcus mutans 2VS1]
 gi|450056574|ref|ZP_21842123.1| hypothetical protein SMU69_02022 [Streptococcus mutans NLML4]
 gi|449151458|gb|EMB55192.1| hypothetical protein SMU3_03044 [Streptococcus mutans 11A1]
 gi|449173906|gb|EMB76438.1| hypothetical protein SMU41_03212 [Streptococcus mutans 2VS1]
 gi|449206697|gb|EMC07393.1| hypothetical protein SMU69_02022 [Streptococcus mutans NLML4]
          Length = 263

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 38  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 93  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 152 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 212 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 250


>gi|290580942|ref|YP_003485334.1| hypothetical protein SmuNN2025_1416 [Streptococcus mutans NN2025]
 gi|449875971|ref|ZP_21782531.1| hypothetical protein SMU102_03663 [Streptococcus mutans S1B]
 gi|449883564|ref|ZP_21785234.1| hypothetical protein SMU103_07295 [Streptococcus mutans SA38]
 gi|449925345|ref|ZP_21800206.1| hypothetical protein SMU22_04895 [Streptococcus mutans 4SM1]
 gi|449947988|ref|ZP_21807749.1| hypothetical protein SMU33_03663 [Streptococcus mutans 11SSST2]
 gi|450028374|ref|ZP_21832112.1| hypothetical protein SMU61_00635 [Streptococcus mutans G123]
 gi|450033877|ref|ZP_21834028.1| hypothetical protein SMU62_00445 [Streptococcus mutans M21]
 gi|450068048|ref|ZP_21846972.1| hypothetical protein SMU72_07237 [Streptococcus mutans NLML9]
 gi|450092756|ref|ZP_21856228.1| hypothetical protein SMU78_04303 [Streptococcus mutans W6]
 gi|450109968|ref|ZP_21861828.1| hypothetical protein SMU82_02336 [Streptococcus mutans SM6]
 gi|450120006|ref|ZP_21865434.1| hypothetical protein SMU85_00854 [Streptococcus mutans ST6]
 gi|450149389|ref|ZP_21876096.1| hypothetical protein SMU92_05620 [Streptococcus mutans 14D]
 gi|450165915|ref|ZP_21882085.1| hypothetical protein SMU95_06504 [Streptococcus mutans B]
 gi|254997841|dbj|BAH88442.1| hypothetical protein [Streptococcus mutans NN2025]
 gi|449161609|gb|EMB64790.1| hypothetical protein SMU22_04895 [Streptococcus mutans 4SM1]
 gi|449167996|gb|EMB70840.1| hypothetical protein SMU33_03663 [Streptococcus mutans 11SSST2]
 gi|449195787|gb|EMB97096.1| hypothetical protein SMU61_00635 [Streptococcus mutans G123]
 gi|449196952|gb|EMB98183.1| hypothetical protein SMU62_00445 [Streptococcus mutans M21]
 gi|449207736|gb|EMC08404.1| hypothetical protein SMU72_07237 [Streptococcus mutans NLML9]
 gi|449218004|gb|EMC18030.1| hypothetical protein SMU78_04303 [Streptococcus mutans W6]
 gi|449225723|gb|EMC25309.1| hypothetical protein SMU82_02336 [Streptococcus mutans SM6]
 gi|449230795|gb|EMC30043.1| hypothetical protein SMU85_00854 [Streptococcus mutans ST6]
 gi|449234497|gb|EMC33502.1| hypothetical protein SMU92_05620 [Streptococcus mutans 14D]
 gi|449240265|gb|EMC38952.1| hypothetical protein SMU95_06504 [Streptococcus mutans B]
 gi|449249644|gb|EMC47751.1| hypothetical protein SMU103_07295 [Streptococcus mutans SA38]
 gi|449253359|gb|EMC51317.1| hypothetical protein SMU102_03663 [Streptococcus mutans S1B]
          Length = 262

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|450100013|ref|ZP_21858585.1| hypothetical protein SMU80_06218 [Streptococcus mutans SF1]
 gi|450169794|ref|ZP_21883172.1| hypothetical protein SMU97_02282 [Streptococcus mutans SM4]
 gi|449220573|gb|EMC20426.1| hypothetical protein SMU80_06218 [Streptococcus mutans SF1]
 gi|449246651|gb|EMC44949.1| hypothetical protein SMU97_02282 [Streptococcus mutans SM4]
          Length = 262

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|325263921|ref|ZP_08130654.1| putative S4 domain protein [Clostridium sp. D5]
 gi|324030959|gb|EGB92241.1| putative S4 domain protein [Clostridium sp. D5]
          Length = 258

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 14/252 (5%)

Query: 82  KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
           K ++E++  A  R  + +SDFL    L       +     + V  GGY  AER +++   
Sbjct: 10  KRLIELSMTAYHRDIITYSDFLNLNELNILHSLPKDRLYTRYVTFGGYGTAER-QMAAFL 68

Query: 142 PEAL----TSD------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
           P+AL     +D      P  V ++        +  +H D+LG+ L  GI R ++GDI++ 
Sbjct: 69  PDALYLRGITDMEALGFPFSVLSIEPLNEKYAEELTHRDYLGAALNLGIERSRLGDILID 128

Query: 192 GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDA 251
           G+K   F V   L+ +L   L +V + SV      L    Y  PR +  K   AS+R+D+
Sbjct: 129 GKKAILF-VEKGLSAWLQEELARVRHTSVMLREESLQDFHY-TPRFEEIKGTVASVRLDS 186

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTR 310
           L S  F  SR++L  LI  G V VN   +T N   ++  DI+SV G G+ +  G ++ T+
Sbjct: 187 LLSLAFSSSRTRLSGLIEGGKVFVNGKLMTTNSCQVKEEDIISVRGMGKFQYKGVLSRTK 246

Query: 311 KGKFAVELIQYL 322
           K +  V + +Y+
Sbjct: 247 KNRIFVIIHKYI 258


>gi|449898457|ref|ZP_21790629.1| hypothetical protein SMU107_05560 [Streptococcus mutans R221]
 gi|449904579|ref|ZP_21792735.1| hypothetical protein SMU108_06161 [Streptococcus mutans M230]
 gi|449928895|ref|ZP_21801402.1| hypothetical protein SMU26_01277 [Streptococcus mutans 3SN1]
 gi|449935360|ref|ZP_21803321.1| hypothetical protein SMU29_00680 [Streptococcus mutans 2ST1]
 gi|449975429|ref|ZP_21815779.1| hypothetical protein SMU44_05296 [Streptococcus mutans 11VS1]
 gi|450011801|ref|ZP_21829338.1| hypothetical protein SMU58_06488 [Streptococcus mutans A19]
 gi|450024075|ref|ZP_21831001.1| hypothetical protein SMU60_05017 [Streptococcus mutans U138]
 gi|450125353|ref|ZP_21867610.1| hypothetical protein SMU86_02118 [Streptococcus mutans U2A]
 gi|450152968|ref|ZP_21876931.1| hypothetical protein SMU93_00028 [Streptococcus mutans 21]
 gi|449164967|gb|EMB68001.1| hypothetical protein SMU26_01277 [Streptococcus mutans 3SN1]
 gi|449166646|gb|EMB69573.1| hypothetical protein SMU29_00680 [Streptococcus mutans 2ST1]
 gi|449176938|gb|EMB79262.1| hypothetical protein SMU44_05296 [Streptococcus mutans 11VS1]
 gi|449189103|gb|EMB90781.1| hypothetical protein SMU58_06488 [Streptococcus mutans A19]
 gi|449192405|gb|EMB93827.1| hypothetical protein SMU60_05017 [Streptococcus mutans U138]
 gi|449232536|gb|EMC31644.1| hypothetical protein SMU86_02118 [Streptococcus mutans U2A]
 gi|449239439|gb|EMC38161.1| hypothetical protein SMU93_00028 [Streptococcus mutans 21]
 gi|449259108|gb|EMC56652.1| hypothetical protein SMU108_06161 [Streptococcus mutans M230]
 gi|449259791|gb|EMC57310.1| hypothetical protein SMU107_05560 [Streptococcus mutans R221]
          Length = 262

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|358067456|ref|ZP_09153935.1| hypothetical protein HMPREF9333_00816 [Johnsonella ignava ATCC
           51276]
 gi|356694372|gb|EHI56034.1| hypothetical protein HMPREF9333_00816 [Johnsonella ignava ATCC
           51276]
          Length = 261

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 123/268 (45%), Gaps = 25/268 (9%)

Query: 72  VGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKES--MMALEKLADVKAVAQGGY 129
           V DK+AI   + I E+A RA  R    H+ FL    L E     +++ L  V     GGY
Sbjct: 2   VIDKDAIFLSRRIKELADRALKRDVFTHTSFLN---LNEQAVFFSIKDLPKVNYKLIGGY 58

Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGN-FGF---QPC--------SHGDFLGSILG 177
             AER ++    P     + D      I    F +   +P         +H D+LG+++ 
Sbjct: 59  EAAER-KVVCFFPVVFEFENDFEQLSDINQKIFDYIYIKPVNEKFSDRLTHRDYLGALMN 117

Query: 178 TGIAREKIGDIILQGEKGAQFLVV-PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
            GI R   GDI++    G+ ++VV   ++  +  +LE V    V+ +       +     
Sbjct: 118 LGIDRCMTGDIVMSC--GSAYVVVLKRISRIIADNLETVKKTKVAVSIEN--CFDTAISD 173

Query: 237 TKSFKTIEA-SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295
           T   K I   S+R+DAL SA F LSR   V  +    V VN   +  +   L++ DIVS+
Sbjct: 174 TGYIKRINVISIRIDALISAVFNLSRGNAVRYVDAEKVFVNSRCIISHSYALKSEDIVSI 233

Query: 296 SGKGRIK-IGEINSTRKGKFAVELIQYL 322
            G GR K IGE + T+KG+  V +  Y+
Sbjct: 234 RGLGRFKYIGEESVTKKGRLMVSVKCYV 261


>gi|404371421|ref|ZP_10976726.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
 gi|226912451|gb|EEH97652.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
          Length = 256

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 27/266 (10%)

Query: 68  LLKGVGDKNAIEEVKHILEMARRASSRR-EVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
           +LK   + +A E +K I E  + A  +   V  S F +P +            +V   A 
Sbjct: 7   ILKSFNEDDAKEAIK-IYEKYKLAYEKDITVFTSSFYSPNIWSFFENCCSN-NEVMFEAN 64

Query: 127 GGYPQAERCRL------SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
           G + ++ER  +      +V +P         +  L I     F    H D+LGSIL  GI
Sbjct: 65  GFFEESERRMICFNNLYNVDYP---------IKILEIKNKSNFSNLKHKDYLGSILSLGI 115

Query: 181 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 240
            R K+GDII++ E  A   V+ E++DY+I +L  +G   +    I  ++   + P   +F
Sbjct: 116 ERNKLGDIIVK-ENKAYLPVLEEISDYIINNLSHIGKSPIEIKIIDNIS---DIPSV-NF 170

Query: 241 KTI---EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           + I    +SLR D++ +    LSR+K + LI +G V +N+         +     V++ G
Sbjct: 171 EEIVINVSSLRADSIVAKLSSLSRAKAIELIDSGKVLINYVKAKDKSQDIVKDTRVTIRG 230

Query: 298 KGRIKIGE-INSTRKGKFAVELIQYL 322
            G+  IG+ I  TR GK  + + +Y+
Sbjct: 231 IGKFIIGDVIGGTRSGKQRIVIKKYI 256


>gi|225870034|ref|YP_002745981.1| hypothetical protein SEQ_0625 [Streptococcus equi subsp. equi 4047]
 gi|225699438|emb|CAW92932.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 264

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           ++ +L++  R  +   +  +DFL P    +LK  + A     +++  +   Y  +E  R+
Sbjct: 19  IERMLDLIARVEANYLLEVTDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRV 74

Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG 195
            V          D  +A + +T N  F   +H   LG+++   GI R  +GDI +  E G
Sbjct: 75  IVAPDYYCLDKADFDLALIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIG 132

Query: 196 -AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALA 253
            AQ ++  +L  Y + ++ K+    V    I L  L       +    I  +SLRVD L 
Sbjct: 133 HAQVMINRQLLSYCLGTIAKIAKARVKLKEIDLDQLLNLTANQQVLTDIMVSSLRVDRLI 192

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKG 312
           +   K SR++ + L+  G V+VN+  VTK    +  GD++S+ G GR  I   N  T+ G
Sbjct: 193 ATVLKQSRNQAIRLVEAGKVKVNYQLVTKASQPVAVGDLISIRGYGRFSILTDNGFTKNG 252

Query: 313 KFAVEL 318
           K+ + L
Sbjct: 253 KYKLTL 258


>gi|450175242|ref|ZP_21885033.1| hypothetical protein SMU98_01733 [Streptococcus mutans SM1]
 gi|449247104|gb|EMC45392.1| hypothetical protein SMU98_01733 [Streptococcus mutans SM1]
          Length = 262

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           K    + +S+R+D + +A  KLSR +   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|414563542|ref|YP_006042503.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus ATCC 35246]
 gi|338846607|gb|AEJ24819.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus ATCC 35246]
          Length = 264

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           ++ +L++  R  +   +  +DFL P    +LK  + A     +++  +   Y  +E  R+
Sbjct: 19  IERMLDLIARVEANYLLEVTDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRV 74

Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG 195
            V          D  +A + +T N  F   +H   LG+++   GI R  +GDI +  E G
Sbjct: 75  IVAPDYYCLDKADFDLALIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIG 132

Query: 196 -AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALA 253
            AQ ++  +L  Y + ++ K+    V    I L  L       +    I  +SLRVD L 
Sbjct: 133 HAQVMINRQLLSYCLGTIAKIARARVKLKEIDLDQLLNLTANQQVLTDIMVSSLRVDRLI 192

Query: 254 SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKG 312
           +   K SR++ + L+  G V+VN+  VTK    +  GD++S+ G GR  I   N  T+ G
Sbjct: 193 ATVLKQSRNQAIRLVEAGKVKVNYQLVTKASQPVAVGDLISIRGYGRFSILTDNGFTKNG 252

Query: 313 KFAVEL 318
           K+ + L
Sbjct: 253 KYKLTL 258


>gi|225868958|ref|YP_002744906.1| hypothetical protein SZO_13920 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702234|emb|CAW99980.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 264

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 18/248 (7%)

Query: 81  VKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           ++ +L++  R  +   +  +DFL P    +LK  + A     +++  +   Y  +E  R+
Sbjct: 19  IERMLDLIARVEANYLLEVTDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRV 74

Query: 138 SVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGE 193
            V  P+      SD D+ A + +T N  F   +H   LG+++   GI R  +GDI +  E
Sbjct: 75  IVA-PDYYCLDKSDFDL-ALIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--E 130

Query: 194 KG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDA 251
            G AQ ++  +L  Y + ++ K+    V    I L  L       +    I  +SLRVD 
Sbjct: 131 IGHAQVMINRQLLSYCLGTIAKIARARVKLKEIDLDQLLNLTTNQQVLADIMVSSLRVDR 190

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TR 310
           L +   K SR++ + L+  G V+VN+  VTK    +  GD++S+ G GR  I   N  T+
Sbjct: 191 LIATVLKQSRNQAIRLVEAGKVKVNYQLVTKASQPVAIGDLISIRGYGRFSILTDNGFTK 250

Query: 311 KGKFAVEL 318
            GK+ + L
Sbjct: 251 NGKYKLTL 258


>gi|296110598|ref|YP_003620979.1| cell division protein () [Leuconostoc kimchii IMSNU 11154]
 gi|339490310|ref|YP_004704815.1| cell division protein [Leuconostoc sp. C2]
 gi|295832129|gb|ADG40010.1| cell division protein (putative) [Leuconostoc kimchii IMSNU 11154]
 gi|338851982|gb|AEJ30192.1| cell division protein (putative) [Leuconostoc sp. C2]
          Length = 264

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 16/221 (7%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 159
           FL P         + +  D+     G  P AE  R  ++    E   SD ++ A L I  
Sbjct: 41  FLNPREQYILQTCVNRAKDLVVQFNGVVPHAESQRAFIAPSFYEIELSDFEL-ALLEIKY 99

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H   LGS +  GI R  IGDI L  +   Q +V  ++  Y+  ++EK+G V 
Sbjct: 100 PVKFTELHHATILGSFMSAGIERAVIGDI-LSHQDQWQIVVDAKMVTYIQQTVEKIGRV- 157

Query: 220 VSCTRIPLLA--LEYEPPRTKS----FKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
               RI L+   L++ P   +        + +SLR+D   SA F +SR    +L+    V
Sbjct: 158 ----RITLMEQNLDHIPVTDRDDWDEVFLLLSSLRIDTAVSAAFDISRRMAKSLVEQEQV 213

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 313
           R+NW T+ K    +  GD+VSV   GR+++  I+  T+K K
Sbjct: 214 RINWATMLKPDHVIAVGDMVSVRHYGRLQLVMIDGLTKKDK 254


>gi|261367029|ref|ZP_05979912.1| putative YlmH protein [Subdoligranulum variabile DSM 15176]
 gi|282571147|gb|EFB76682.1| S4 domain protein [Subdoligranulum variabile DSM 15176]
          Length = 245

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 8/247 (3%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           ++ + E+ R A +R    ++ FL+      +  A  K     A   GGY +AER  L + 
Sbjct: 1   MRRVEELCRVAQNRGIPRYTGFLSDREQVLAQAACHKALFSAARFWGGYDEAERKVLCLE 60

Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-- 198
            PEA   +P     L+       +   H D+LGSIL  G+ R  +GD+I   +  A F  
Sbjct: 61  PPEAWQEEPLAYLRLAALNAGEDKMPGHRDYLGSILALGLDRACLGDLIADPQDSAVFYA 120

Query: 199 LVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
           +V+ +  +++ + L   G+  V    C ++P+   +    R     T+ +SLR DA+ +A
Sbjct: 121 IVLADKQEFIASELTSAGHCPVRAECCEQLPVHVGQ-ATERALREATV-SSLRADAVLAA 178

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKF 314
               SR+K  + I+ G V +N   +      +   DI +V G GR ++ +I   +RK + 
Sbjct: 179 MMHTSRTKAADYIAAGRVEINHLPLRAAHEPVYARDIFTVRGVGRYQLADIGGKSRKDRI 238

Query: 315 AVELIQY 321
            +   QY
Sbjct: 239 FISFFQY 245


>gi|450005156|ref|ZP_21826540.1| hypothetical protein SMU57_01777 [Streptococcus mutans NMT4863]
 gi|449189020|gb|EMB90704.1| hypothetical protein SMU57_01777 [Streptococcus mutans NMT4863]
          Length = 262

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           K    + +S+R+D + +   KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAVVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|358054991|ref|ZP_09147519.1| hypothetical protein SS7213T_11255 [Staphylococcus simiae CCM 7213]
 gi|357256725|gb|EHJ07057.1| hypothetical protein SS7213T_11255 [Staphylococcus simiae CCM 7213]
          Length = 259

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 6/189 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  PE  T+  D    + I  N+   F    H   LG+++  GI R+++
Sbjct: 64  GGPNAERQRAIIA-PEYYTATDDDFDLVLIQVNYPDKFVTLKHQHILGTLMSLGIDRQQV 122

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE+  QF++   L  +++  L+++   +V    IP   +       K      +
Sbjct: 123 GDIIV-GEQ-IQFVLTSRLQSFIMLELQRIKGATVKLNTIPFSDMIQSKEDWKLSSATVS 180

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           SLR+D +       SR+    LI    V+VN TTV  +   L+  D++S+ G GR +I  
Sbjct: 181 SLRLDVILKEMIHKSRTIAKQLIDKKRVKVNHTTVDSSDFQLQMNDLISIQGYGRAQITN 240

Query: 306 I-NSTRKGK 313
           +   T+K K
Sbjct: 241 LGGKTKKDK 249


>gi|406670577|ref|ZP_11077822.1| hypothetical protein HMPREF9706_00082 [Facklamia hominis CCUG
           36813]
 gi|405582093|gb|EKB56099.1| hypothetical protein HMPREF9706_00082 [Facklamia hominis CCUG
           36813]
          Length = 261

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 7/221 (3%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITG 159
           FLTP   +  +  + +  D+K    GG   +E  R ++ +P       D   ++ L I  
Sbjct: 38  FLTPRQCRIVLQLVNRQDDIKVKFYGGKIGSESQR-ALIYPNYYQVQEDDFGLSYLQIDY 96

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F   SH   LG+ L  GI R ++GDI   G+   Q +V  ++ DY   +L K+ +  
Sbjct: 97  PIKFGDLSHSKILGAFLALGIDRNRLGDIFTNGQVW-QVVVDQKMLDYFKQNLVKIDHFG 155

Query: 220 VSCTRIPLLALEYEPPRTKSFKTI-EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 278
           +    +    L  +P     F+ I  +SLR+D+L S+ F +SR +  ++I +G V+VN+ 
Sbjct: 156 IKLKELDSSQL-VDPIDEWEFEVITSSSLRLDSLISSIFHISRQRSKDMIKSGLVKVNFV 214

Query: 279 TVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 318
              +  + L+  D+VSV   GR ++ ++   T+K  + +++
Sbjct: 215 MAERGDSLLQEDDLVSVRRFGRFQLKQLMGMTKKNNYRMQI 255


>gi|224476293|ref|YP_002633899.1| putative RNA-binding protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420900|emb|CAL27714.1| putative RNA-binding protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 203

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 6/199 (3%)

Query: 121 VKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
           +K   QGG   +ER R  +  PE  +  D D  +  L +     F    H + LG+++  
Sbjct: 1   MKLEFQGGNSDSERKRAMIS-PEYFSPKDEDFELVLLELEYPEKFATIDHRNVLGTLMSL 59

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
            I R+++GDI++ G+K  QF++   +  Y++  L+++ NV V    +P+  +        
Sbjct: 60  SIERDQLGDIVV-GDK-IQFILTKNIESYIMLELKRIKNVPVKLHEVPMQDMIQSKENWT 117

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
           + +   ++LR+D +     + SRS     I    ++VN T + +    L +GD++S+ G 
Sbjct: 118 THQATVSALRLDVVLKEMIRKSRSIAKQYIEKKLIKVNHTIIERPDFQLESGDLLSIQGH 177

Query: 299 GRIKIGEIN-STRKGKFAV 316
           GR ++ EI   T+K K  +
Sbjct: 178 GRARMTEIGPKTKKDKLRI 196


>gi|433463299|ref|ZP_20420858.1| hypothetical protein D479_16904 [Halobacillus sp. BAB-2008]
 gi|432187809|gb|ELK45066.1| hypothetical protein D479_16904 [Halobacillus sp. BAB-2008]
          Length = 263

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 11/224 (4%)

Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           +DFL P   ++ M+    L    D+    +GG    ER R ++  P+     P+    + 
Sbjct: 34  TDFLDP---RQQMIVKTILGNDPDLIYGMEGGGASNERKR-AILAPDYEILAPEDYQLVL 89

Query: 157 ITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214
           +  ++   F    H D LG+ +  GI REK+GD+I++  K  Q +   E+++Y+  +L  
Sbjct: 90  LEASYPDKFVTLEHRDVLGAFMSLGIRREKLGDLIVRDGK-IQIIAASEISEYIKMNLTG 148

Query: 215 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
           V   +V     P  AL          ++  +SLR+D L    + +SR K    I +G V+
Sbjct: 149 VKRSNVQFEEKPFSALLESDEEWAERESTVSSLRLDVLVKEIYGMSRKKAGLFIDSGQVK 208

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 317
           VN+  V     +L  GD++S+ GKGR ++ ++   T+K K+ V+
Sbjct: 209 VNYRVVEDPAFSLEEGDMLSLRGKGRSRLLQVLGQTKKEKYKVK 252


>gi|406587577|ref|ZP_11062446.1| hypothetical protein GMD1S_06737 [Streptococcus sp. GMD1S]
 gi|404472943|gb|EKA17325.1| hypothetical protein GMD1S_06737 [Streptococcus sp. GMD1S]
          Length = 263

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+G KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSGLKLSRNQAS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|337281553|ref|YP_004621024.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
           15912]
 gi|335369146|gb|AEH55096.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
           15912]
          Length = 263

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 15/250 (6%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
           E +   +E++ R   R  V  + FL P      +  L  +A    ++  A     + E  
Sbjct: 16  EFIDRCIELSERVIERYSVEVTGFLNP----HQVAILRNVAASYQLQVFASSDEQKMEYA 71

Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
           ++ V  P+    DP+   +A L +     F   SH   LG+I+   G+ R+  GDI L  
Sbjct: 72  KVIVA-PDYYQLDPNDFDLALLEMVYASKFHHLSHSQVLGTIVHQLGVERKSFGDI-LTS 129

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           E   Q  V      Y +  ++K+  V V    +PL         ++    + +S R+D +
Sbjct: 130 EGKIQVFVEQRFVHYFMDHIQKISRVPVRLREVPLSEQMIVEEESQQRDILVSSFRLDKV 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI---GEINST 309
            +  FKLSRS+   LIS+G V+VN+ T +     +   D+VSV   GR+KI     I+ +
Sbjct: 190 IAGTFKLSRSQASQLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKS 249

Query: 310 RKGKFAVELI 319
            K K  VE++
Sbjct: 250 GKYKLTVEVL 259


>gi|172057962|ref|YP_001814422.1| RNA-binding S4 domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990483|gb|ACB61405.1| RNA-binding S4 domain protein [Exiguobacterium sibiricum 255-15]
          Length = 257

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 18/227 (7%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSVG--HPEALTSDPDIVAALS 156
           +DFL P   +E  +  E +    A+  +GG+  AER R  +   + E   +D DI A   
Sbjct: 34  TDFLDP---REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYELDANDFDI-AIYR 89

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F   SH    G++L  G+ R K GD+++Q ++  QF V  E+A Y+  ++++ G
Sbjct: 90  IHYPTKFVELSHRQVTGTLLNVGLKRGKFGDVVIQ-DQLVQFAVAKEVASYIEANVDRAG 148

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALASAGFKLSRSKLVNLISNG 271
              +   R+ L+  E E  + K  +  E     +SLR D + S     SR K  +LI  G
Sbjct: 149 KTKI---RLSLVDSE-EQLKIKDQEWQEELGFVSSLRFDTVVSEILGFSRQKAQSLIKQG 204

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVE 317
           + +VN+  V      L  GD++S+ G GR+K I  + ST++ +  ++
Sbjct: 205 ESKVNYKIVEDPSFLLEEGDLLSLRGTGRVKLIAVLGSTKRDRIKLQ 251


>gi|450082571|ref|ZP_21852414.1| hypothetical protein SMU76_05264 [Streptococcus mutans N66]
 gi|449214289|gb|EMC14574.1| hypothetical protein SMU76_05264 [Streptococcus mutans N66]
          Length = 262

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFIFSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|365904414|ref|ZP_09442173.1| hypothetical protein LverK3_02439 [Lactobacillus versmoldensis KCTC
           3814]
          Length = 266

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLG 173
           + K  D+     GGY  AER R  +     +    D    L  +     F    HG  LG
Sbjct: 56  VNKYDDLFVHYYGGYEGAERVRGMIAPDYFVPQQEDFHEQLFEVRYPEKFANLHHGQILG 115

Query: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233
           S+ G GI R+  GDII  G++  QF     +++YL   ++K+G   +   +  +      
Sbjct: 116 SLTGAGIDRDHFGDIITDGKR-WQFFAFDNISNYLEEQVDKIGPFKIHLIKKDIQNDLLM 174

Query: 234 PPRTKSFKTIEA-SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 292
           P      +TI   SLR+D L +  + +SR++   L+ +G V++NW       + +   D 
Sbjct: 175 PIDDSEDETINVQSLRIDTLIAEVYGMSRTQSKALVEHGRVQLNWVPQRNASSFVTLYDT 234

Query: 293 VSVSGKGRIKIGEI-NSTRKGKF 314
           +SV G GRI +  I   +R  K+
Sbjct: 235 ISVRGYGRILVRNIMGKSRNNKY 257


>gi|450071266|ref|ZP_21848058.1| hypothetical protein SMU74_02732 [Streptococcus mutans M2A]
 gi|450107178|ref|ZP_21860918.1| hypothetical protein SMU81_07445 [Streptococcus mutans SF14]
 gi|450160934|ref|ZP_21880262.1| hypothetical protein SMU94_06913 [Streptococcus mutans 66-2A]
 gi|449212548|gb|EMC12909.1| hypothetical protein SMU74_02732 [Streptococcus mutans M2A]
 gi|449222346|gb|EMC22075.1| hypothetical protein SMU81_07445 [Streptococcus mutans SF14]
 gi|449239396|gb|EMC38119.1| hypothetical protein SMU94_06913 [Streptococcus mutans 66-2A]
          Length = 262

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR +   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQIISQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|456012727|gb|EMF46415.1| hypothetical protein B481_2169 [Planococcus halocryophilus Or1]
          Length = 261

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 155
           +DFL P    + ES+M      DV  +  G +  AER R  L   + E    D +I    
Sbjct: 35  TDFLDPRQRFIVESVMGS---TDVNMMTSGIFKDAERQRVLLYPSYFEPQQEDFNI-TVF 90

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            +     F    H D LGSI+  G+ R K GDI +  E+  Q  V+ E++ YL ++    
Sbjct: 91  ELKYPSKFVNLRHPDILGSIMSLGLDRSKFGDIRIDNER-VQLAVMNEISSYLQSNFVSA 149

Query: 216 GNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 274
             V V    +  L  +              +S+R+D + S+ + +SR K   LI  G V+
Sbjct: 150 AKVKVQLNEVTDLTEMIETSEEWTEESYTVSSMRLDTVMSSVYNISRQKAAALIHGGKVK 209

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           VNWT   +    L   D++S  G GR+++  I   T+K K  +++
Sbjct: 210 VNWTLQEQPSFELHESDMISSRGFGRVRLIMIEGRTKKDKVRLQI 254


>gi|389815970|ref|ZP_10207207.1| hypothetical protein A1A1_04062 [Planococcus antarcticus DSM 14505]
 gi|388465464|gb|EIM07781.1| hypothetical protein A1A1_04062 [Planococcus antarcticus DSM 14505]
          Length = 261

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 15/227 (6%)

Query: 100 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 155
           +DFL P    + E++M     +DV+ ++ G +  AER R  L   + E    D  I    
Sbjct: 35  TDFLDPRQRFIVEAVMGS---SDVEMMSSGVFKNAERQRVLLYPSYFEPQQEDFSI-TVF 90

Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
            +     F    H D LGS++  G+ R K GDI +  E+  Q  V+ E++ YL ++    
Sbjct: 91  ELKYPSKFVNLRHPDILGSLMSLGLDRSKFGDIRIDNER-VQLAVMNEISPYLESNFISA 149

Query: 216 GNVSVS---CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 272
             V +     T I  L    E    +S+    +S+R+D + S+ + +SR K   LI  G 
Sbjct: 150 AKVKIQLNEVTEIEQLIDTSEEWTEESYTV--SSMRLDTVMSSVYNISRQKASALIHGGK 207

Query: 273 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           V+VNWT   +    L   D++S  G GR+++  I   T+K K  +++
Sbjct: 208 VKVNWTLQEQPSFELHESDMISSRGYGRVRLIMIEGRTKKDKVRLQV 254


>gi|421892503|ref|ZP_16323156.1| FIG001583: hypothetical protein, contains S4-like RNA binding
           domain [Streptococcus pyogenes NS88.2]
 gi|379981755|emb|CCG26878.1| FIG001583: hypothetical protein, contains S4-like RNA binding
           domain [Streptococcus pyogenes NS88.2]
          Length = 239

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)

Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 155
           ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+ +   SD  I A +
Sbjct: 14  TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 69

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 213
            I+    F   +H   LG+++   G+ R   GD+ +  E G AQ ++  EL DY + ++ 
Sbjct: 70  EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 127

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+   SV    +    L      +++   + +S R+D + +   K SR++++ LI    +
Sbjct: 128 KITKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVAIILKKSRTQVIALIEANKI 187

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           +VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 188 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 233


>gi|450064071|ref|ZP_21845250.1| hypothetical protein SMU70_08128 [Streptococcus mutans NLML5]
 gi|449204034|gb|EMC04857.1| hypothetical protein SMU70_08128 [Streptococcus mutans NLML5]
          Length = 263

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 38  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 93  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR +   LI +  V
Sbjct: 152 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 212 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 250


>gi|450051080|ref|ZP_21840652.1| hypothetical protein SMU68_04771 [Streptococcus mutans NFSM1]
 gi|449202211|gb|EMC03150.1| hypothetical protein SMU68_04771 [Streptococcus mutans NFSM1]
          Length = 262

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR +   LI +  V
Sbjct: 151 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|379795557|ref|YP_005325555.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSHR1132]
 gi|356872547|emb|CCE58886.1| ribosomal protein S4, putative [Staphylococcus aureus subsp. aureus
           MSHR1132]
          Length = 259

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+K    GG P AER R  +S  + E   SD ++ + + I     F    H   LG+++ 
Sbjct: 57  DLKVSFNGG-PFAERKRAIISPSYFEPKESDFEL-SLIEINYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+ GE G QF++   L  +++  L+++   SV    IPL  +       
Sbjct: 115 LGIEREQVGDIIV-GE-GIQFVLTSRLESFIMLELQRIKGASVKLNTIPLTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIDKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|306827038|ref|ZP_07460336.1| S4 domain-containing protein YlmH [Streptococcus pyogenes ATCC
           10782]
 gi|304430784|gb|EFM33795.1| S4 domain-containing protein YlmH [Streptococcus pyogenes ATCC
           10782]
          Length = 263

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 86  EMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GH 141
           +M  R      +  ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+
Sbjct: 24  DMINRVEDYYLLEVTEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY 80

Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFL 199
            +   SD  I A + I+    F   +H   LG+++   G+ R   GD+ +  E G AQ +
Sbjct: 81  YDLEQSDFQI-ALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLM 137

Query: 200 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 259
           +  EL DY + ++ K+   SV    +    L      +++   + +S R+D + +   K 
Sbjct: 138 IKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKK 197

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
            R++++ LI    ++VN+    K    L  GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 198 FRTQVIALIEANKIKVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257


>gi|449980225|ref|ZP_21817084.1| hypothetical protein SMU50_02473 [Streptococcus mutans 5SM3]
 gi|449177243|gb|EMB79553.1| hypothetical protein SMU50_02473 [Streptococcus mutans 5SM3]
          Length = 262

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           K    + +S+R+D + +A  KLSR K   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV   GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRDYGRFTISRDNGLSKG 249


>gi|449967082|ref|ZP_21812613.1| hypothetical protein SMU40_08873 [Streptococcus mutans 15VF2]
 gi|450048099|ref|ZP_21839652.1| hypothetical protein SMU66_09372 [Streptococcus mutans N34]
 gi|450088528|ref|ZP_21854815.1| hypothetical protein SMU77_07276 [Streptococcus mutans NV1996]
 gi|450132364|ref|ZP_21870018.1| hypothetical protein SMU88_03772 [Streptococcus mutans NLML8]
 gi|450143397|ref|ZP_21873436.1| hypothetical protein SMU9_01432 [Streptococcus mutans 1ID3]
 gi|450180689|ref|ZP_21887384.1| hypothetical protein SMU99_03694 [Streptococcus mutans 24]
 gi|449152356|gb|EMB56066.1| hypothetical protein SMU9_01432 [Streptococcus mutans 1ID3]
 gi|449153233|gb|EMB56920.1| hypothetical protein SMU88_03772 [Streptococcus mutans NLML8]
 gi|449169407|gb|EMB72183.1| hypothetical protein SMU40_08873 [Streptococcus mutans 15VF2]
 gi|449197160|gb|EMB98367.1| hypothetical protein SMU66_09372 [Streptococcus mutans N34]
 gi|449216439|gb|EMC16557.1| hypothetical protein SMU77_07276 [Streptococcus mutans NV1996]
 gi|449248096|gb|EMC46359.1| hypothetical protein SMU99_03694 [Streptococcus mutans 24]
          Length = 262

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +A  KLSR +   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|422940293|ref|ZP_16967632.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
           51191]
 gi|339890036|gb|EGQ79226.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
           51191]
          Length = 241

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +A +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  + D     V    I     F    H  +LG+ILG GI RE +GD+I++ ++ 
Sbjct: 58  AV-YPEYFSEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNDEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  V    I     E E P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+    +    +  GD V +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRASSVNYIDLGNVQVNYEIQREKSYRISVGDTVIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|406659214|ref|ZP_11067352.1| S4 domain-containing protein YlmH [Streptococcus iniae 9117]
 gi|405577323|gb|EKB51471.1| S4 domain-containing protein YlmH [Streptococcus iniae 9117]
          Length = 263

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 16/248 (6%)

Query: 78  IEEVKHILEMARRASSRREVLH-SDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAER 134
           IE++K +++   +      VLH +DFL P   ++  +A   +A   +   +     Q+E 
Sbjct: 19  IEKIKDVIQKVDQTY----VLHVTDFLNP---RQITIAKNVVAHSGLHCYSSTDSFQSEY 71

Query: 135 CRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
            RL +        + D  ++ L +  +  F    H   LG+++   GI R  IGDI+++ 
Sbjct: 72  GRLIIAPDYYQLDEADFEISLLEMRYHAKFNQLKHSQILGTLINELGIKRSLIGDILVE- 130

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDA 251
           E  AQ +V   L  Y + ++ ++   SVS   I   + +  P    S   +  +SLR+D 
Sbjct: 131 EGYAQLMVCQHLLSYFLGNITRIARTSVSLKEIDF-SKQIIPKMQASMVDVTVSSLRIDR 189

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TR 310
           L ++  KLSR + + LI++  V +N+  + K    L  GD+VSV G GR  +   N  T+
Sbjct: 190 LMASILKLSRHQAIKLIASEKVTINYRKINKASDLLEVGDLVSVRGFGRFMLMADNGFTK 249

Query: 311 KGKFAVEL 318
            GK  + L
Sbjct: 250 NGKHKLTL 257


>gi|406577797|ref|ZP_11053386.1| hypothetical protein GMD6S_06984 [Streptococcus sp. GMD6S]
 gi|404459490|gb|EKA05846.1| hypothetical protein GMD6S_06984 [Streptococcus sp. GMD6S]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|293365886|ref|ZP_06612589.1| S4 domain-containing protein YlmH [Streptococcus oralis ATCC 35037]
 gi|307702291|ref|ZP_07639249.1| S4 domain protein [Streptococcus oralis ATCC 35037]
 gi|291315564|gb|EFE56014.1| S4 domain-containing protein YlmH [Streptococcus oralis ATCC 35037]
 gi|307624094|gb|EFO03073.1| S4 domain protein [Streptococcus oralis ATCC 35037]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 131 QAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDII 189
           ++ R  L   + E   SD ++ A L I     F+  SHG  LG+I+   GI R+  GDI+
Sbjct: 70  ESVRVLLYPAYFEPEISDFEM-ALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDIL 128

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 249
           +  EK AQ  V  +        + K+G + VS    P           +  + + +S R+
Sbjct: 129 V-DEKRAQIFVNRDFIPLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRL 187

Query: 250 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-S 308
           DAL S+  KLSR++   LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  
Sbjct: 188 DALLSSALKLSRNQTSQLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQ 247

Query: 309 TRKGK 313
           T+K K
Sbjct: 248 TKKDK 252


>gi|225018391|ref|ZP_03707583.1| hypothetical protein CLOSTMETH_02338 [Clostridium methylpentosum
           DSM 5476]
 gi|224948809|gb|EEG30018.1| hypothetical protein CLOSTMETH_02338 [Clostridium methylpentosum
           DSM 5476]
          Length = 249

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 14/183 (7%)

Query: 148 DPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 203
           +PD+    +A+L+     G+   SH DFLGS++G  I R+ +GDI   GE    F V   
Sbjct: 73  EPDLAEFPIASLTAEYPVGY-ALSHRDFLGSLMGLQIKRDAVGDI-FPGEGWCVFFVRES 130

Query: 204 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLS 260
           + + ++  L KVG V V    +P   + +E P    F+ +    ASLR+D + +   +LS
Sbjct: 131 VREVVLEQLTKVGRVGVRI--VP--GIRHELPSHAKFEPVSGTVASLRLDCVVALLSRLS 186

Query: 261 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELI 319
           R K    I  G V+VN  T       L+ GDI+S+ G G+  +  E+  T+KG+  +   
Sbjct: 187 REKASAAIQLGTVQVNHETAQSCSLALKPGDILSIRGCGKFLLADEVKQTKKGRLFITGK 246

Query: 320 QYL 322
           +Y+
Sbjct: 247 KYI 249


>gi|357239718|ref|ZP_09127052.1| S4 domain protein [Streptococcus ictaluri 707-05]
 gi|356751474|gb|EHI68626.1| S4 domain protein [Streptococcus ictaluri 707-05]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 146 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPEL 204
           T D D+ A + I+ N  F   SH   LG+++   GI R  +GDI L  +  AQ ++  +L
Sbjct: 85  TEDFDM-ALVEISYNAKFNHLSHAQILGTLINELGIKRSLLGDIYLDLDY-AQIMISRKL 142

Query: 205 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
             YL+ ++ K+   SV+   +    L     +  +     +SLR+D L +   KLSRS+ 
Sbjct: 143 LPYLLGNISKIARASVTLKEVTFDQLVQGTAQEITLDLTVSSLRLDRLLATVLKLSRSQA 202

Query: 265 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 316
           + LI    V+ N+  + K   ++  GD++S+ G GR K+   N  T+ GK+ +
Sbjct: 203 IKLIETDKVKCNYQPMDKPSESVAVGDLISIRGFGRFKLLSDNGFTKNGKYKL 255


>gi|315613570|ref|ZP_07888477.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
           49296]
 gi|315314261|gb|EFU62306.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
           49296]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEECPFTDRIISKIDYREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQIAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|169335053|ref|ZP_02862246.1| hypothetical protein ANASTE_01459 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257791|gb|EDS71757.1| S4 domain protein [Anaerofustis stercorihominis DSM 17244]
          Length = 247

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 2/146 (1%)

Query: 168 HGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL 227
           H D LGSIL   + R K+GDI +  +   +  V   ++++L++ L K+G  +V+     +
Sbjct: 93  HQDVLGSILSLSVDRSKVGDINILDDH-IEIFVYDTISEFLVSELTKIGGNNVTFYECDI 151

Query: 228 LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTL 287
                  P+ K    I  S+R+DA+    FKLSR++    +  G V++N   V+K   T+
Sbjct: 152 NEASVIEPKFKELNIIVPSMRLDAVIGNIFKLSRNEANMFVKGGKVKINHNQVSKPAMTV 211

Query: 288 RTGDIVSVSGKGR-IKIGEINSTRKG 312
           + GD++SV  KGR I   E   T+KG
Sbjct: 212 KVGDMISVRTKGRAIVDSESGQTKKG 237


>gi|387879109|ref|YP_006309412.1| hypothetical protein Spaf_0590 [Streptococcus parasanguinis FW213]
 gi|419800611|ref|ZP_14325884.1| S4 domain protein [Streptococcus parasanguinis F0449]
 gi|385694545|gb|EIG25140.1| S4 domain protein [Streptococcus parasanguinis F0449]
 gi|386792564|gb|AFJ25599.1| hypothetical protein Spaf_0590 [Streptococcus parasanguinis FW213]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 15/250 (6%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
           E +   +E++ R   R  V  + FL P      +  L  +A    ++  A       E  
Sbjct: 16  EFIDRCIELSERVMERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQNMEYA 71

Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
           ++ V  P+    DP+   +A L +     F   SH   LG+I+   G+ R+  GDI L  
Sbjct: 72  KVIVA-PDYYQLDPNDFDLALLEMVYASKFHHLSHSQVLGTIVHQLGVERKSFGDI-LTS 129

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           +   Q  V      Y +  ++K+  V V    +PL         ++    + +S R+D +
Sbjct: 130 DGKIQVFVEQRFVHYFMDHIQKISRVPVRLREVPLSEQMIVEEESQQRDILVSSFRLDKV 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI---GEINST 309
            +  FKLSRS+   LIS+G V+VN+ T +     +   D+VSV   GR+KI     I+ +
Sbjct: 190 IAGTFKLSRSQASQLISSGLVKVNYATTSNISYAVGLNDLVSVRRFGRLKIVSENGISKS 249

Query: 310 RKGKFAVELI 319
            K K  VE++
Sbjct: 250 GKYKLTVEVL 259


>gi|419780730|ref|ZP_14306571.1| S4 domain protein [Streptococcus oralis SK100]
 gi|383184903|gb|EIC77408.1| S4 domain protein [Streptococcus oralis SK100]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +       
Sbjct: 90  MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
            + K+G + VS    P           +  + + +S R+DAL S+  KLSR++   LI  
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREVLVSSFRLDALLSSALKLSRNQASQLIEK 208

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
             V+VN+  V K+   +  GD++SV   GR+KI + N  T+K K  + +
Sbjct: 209 KSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKIVKDNGQTKKDKIKLSI 257


>gi|322389018|ref|ZP_08062588.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
           903]
 gi|321144323|gb|EFX39731.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
           903]
          Length = 263

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 13/245 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
           E +   +E++ R   R  V  + FL P      +  L  +A    ++  A     + E  
Sbjct: 16  EFIDRCIELSERVVERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQKMEYA 71

Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
           ++ V  P+    DP    +A L +     F   +H   LG+I+   G+ R+  GDI L  
Sbjct: 72  KVIVA-PDYYQLDPSDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTS 129

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           E   Q  V      Y +  ++K+  V V    +PL         ++    + +S R+D +
Sbjct: 130 EGKIQVFVEQRFVAYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKV 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK- 311
            +  FKLSRS+   LIS+G V+VN+ T +     +   D+VSV   GR+KI   N   K 
Sbjct: 190 IAGTFKLSRSQASQLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKS 249

Query: 312 GKFAV 316
           GK+ V
Sbjct: 250 GKYKV 254


>gi|167771412|ref|ZP_02443465.1| hypothetical protein ANACOL_02778 [Anaerotruncus colihominis DSM
           17241]
 gi|167666052|gb|EDS10182.1| S4 domain protein [Anaerotruncus colihominis DSM 17241]
          Length = 253

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 120/265 (45%), Gaps = 28/265 (10%)

Query: 72  VGDKNAIEEVKHI---LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-- 126
           + DK       HI   LE+AR++ + R    S FL     ++ ++A   ++   + A+  
Sbjct: 3   LADKKEQAFAAHICDLLEIARKSYTAR---FSGFLDA---RQLVLARGCVSAAGSGAEHL 56

Query: 127 --GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS---HGDFLGSILGTGIA 181
             GGYP AER  L    P      PD  +   +    G++      H D LGS+ G  I 
Sbjct: 57  FFGGYPGAERVMLGAFAP---YEQPDETSFPIVPLTIGYRAQDAPGHRDLLGSLTGLAIG 113

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS-CTRIPLLALEYEPP--RTK 238
           RE IGDI++ GE    F V   +A  ++  L+K G   V  C  +P    E  P   R  
Sbjct: 114 REAIGDILVGGEYAVCF-VSSAVAPVILNELKKAGRCGVRVCEGMP----EVLPALHRYA 168

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
               I  SLR+D + +A   LSR K    I +  V VN   + +    L  GD+ S+ G 
Sbjct: 169 DLPLIVTSLRLDCMVAAVAGLSREKAAQAIRSQLVAVNGAVLAQTSGMLCEGDVFSIRGY 228

Query: 299 GRIKIGEI-NSTRKGKFAVELIQYL 322
           G+    ++ +ST+KG+  +   +Y+
Sbjct: 229 GKYLFKQVLSSTKKGRLHILCRKYV 253


>gi|410455445|ref|ZP_11309325.1| RNA-binding S4 domain-containing protein [Bacillus bataviensis LMG
           21833]
 gi|409929272|gb|EKN66357.1| RNA-binding S4 domain-containing protein [Bacillus bataviensis LMG
           21833]
          Length = 257

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSI 157
           +DFL P       M + +  DV+    GG    ER R  +  P+ L +  D   ++   I
Sbjct: 34  TDFLDPREQHILKMLIGENGDVRYSLFGGTEGVERKRAYI-FPDYLAASEDDFQISLFGI 92

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H   LG+++  G+ R K GDI+++  +  Q      ++D++ +++E +G 
Sbjct: 93  EYPAKFVTIEHRQVLGTLMSLGLKRGKFGDILMKDGR-IQLFAAKGISDFIKSNIESIGR 151

Query: 218 VSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 276
             V      +  A+  +    +   T+ +SLR+D + S  + +SR K +  I +G V+VN
Sbjct: 152 AGVKLVETDITHAIAAKELWNEQDLTV-SSLRLDTVISGIYHISRQKSLTYIQHGLVKVN 210

Query: 277 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           WT           GD++SV G GR KI  I+  T++ K+ +
Sbjct: 211 WTVTENPSFACEAGDMISVRGHGRAKIIGIDGKTKREKWRI 251


>gi|333398679|ref|ZP_08480492.1| S4 domain-containing protein [Leuconostoc gelidum KCTC 3527]
 gi|406600235|ref|YP_006745581.1| S4 domain-containing protein [Leuconostoc gelidum JB7]
 gi|406371770|gb|AFS40695.1| S4 domain-containing protein [Leuconostoc gelidum JB7]
          Length = 263

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 1/152 (0%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           +A L I     F    H   LG+ +  GI RE IGDI L  +K  Q +V  ++  Y+  +
Sbjct: 92  LAILEIKYPVKFAELHHSMILGAFMSAGIKREVIGDI-LSNDKKWQVIVDAKMITYIQQT 150

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 271
           ++K+G + ++     +  +            + +SLR+D   S  F + RS   +LI   
Sbjct: 151 VQKIGRIKIALIARDVKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNIPRSVAKSLIEQQ 210

Query: 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            VRVNWTT+ K    +  GDIVSV   GR+++
Sbjct: 211 QVRVNWTTIVKPDHVVAVGDIVSVRKYGRLQL 242


>gi|419818690|ref|ZP_14342638.1| hypothetical protein GMD4S_09320, partial [Streptococcus sp. GMD4S]
 gi|404461223|gb|EKA07199.1| hypothetical protein GMD4S_09320, partial [Streptococcus sp. GMD4S]
          Length = 281

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 46  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 102

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 103 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 161

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 162 PLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQAS 221

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K
Sbjct: 222 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 270


>gi|419781845|ref|ZP_14307659.1| S4 domain protein [Streptococcus oralis SK610]
 gi|383183903|gb|EIC76435.1| S4 domain protein [Streptococcus oralis SK610]
          Length = 263

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +       
Sbjct: 90  MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
            + K+G + VS    P           +  + + +S R+DAL S+  KLSR++   LI  
Sbjct: 149 GIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
             V+VN+  V K    +  GD++SV   GR+K+ + N  T+K K
Sbjct: 209 KSVQVNYHVVEKTDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|313114069|ref|ZP_07799621.1| S4 domain protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623478|gb|EFQ06881.1| S4 domain protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 272

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 5/246 (2%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSV 139
           ++HI ++A  A SR    +S FL+      +  AL +    +    +GG+  AER  L +
Sbjct: 27  MRHIEDLAHTAFSRDIARYSAFLSDREQDLARAALGRAGVQEGFRFEGGWLNAERRVLCI 86

Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQF 198
               +    P     L      G    +H D+LGS++G  + RE +GDI+L + + G  +
Sbjct: 87  EPEYSCGEAPICCVRLQCRAQAGAALPAHKDYLGSLMGLELRREALGDIVLPEDQPGTAY 146

Query: 199 LVVPELADYLIT-SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAG 256
           +   E A  LI   L +VG+  ++   + L  +   P   +   +   +SLR+DA+ +A 
Sbjct: 147 VFALEPAAQLICRELFQVGHTELTTELLTLDEVPQFPQAEREMHSATVSSLRLDAVLAAM 206

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFA 315
              SR +   LI  G V +N     K    +  GD+ +V GKGR  +  +   +RK +  
Sbjct: 207 LHCSRGQASELIEAGRVEINHLPADKPHAQVYEGDVFTVRGKGRFNLTALPGKSRKDRSI 266

Query: 316 VELIQY 321
           +E  QY
Sbjct: 267 IEFFQY 272


>gi|340751680|ref|ZP_08688490.1| RNA binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|340562105|gb|EEO35691.2| RNA binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 257

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 211
           V    +T    F+   H  +LG+I+  GI RE +GD+I++ +     +V  E+ D+L+ +
Sbjct: 89  VKYFKVTNRSKFKELEHKHYLGTIMSLGIKRELMGDLIVEDD-SCYGIVSEEIFDFLVDN 147

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALASAGFKLSRSKLVN 266
           L++VG       R P+   E    +  S K  E     +S+R+D + S     SRSK + 
Sbjct: 148 LKEVG-------RNPVTVEEVNRSQVPSLKFEELIDSVSSVRLDNIVSVMINNSRSKGLE 200

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 322
           LI  G+V VN+    +  + L+ GDIV++  KG+    +I    +KGK  V + +++
Sbjct: 201 LIETGEVSVNYVVDKEKNSPLKEGDIVTIRKKGKFIFEKILGENKKGKIRVLIKRFI 257


>gi|451819455|ref|YP_007455656.1| putative RNA-binding S4 domain-containing protein [Clostridium
           saccharoperbutylacetonicum N1-4(HMT)]
 gi|451785434|gb|AGF56402.1| putative RNA-binding S4 domain-containing protein [Clostridium
           saccharoperbutylacetonicum N1-4(HMT)]
          Length = 254

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V    F TP V K     L+     K  + G + +AER  +S  + +     P  +  L 
Sbjct: 34  VFGRSFYTPNVWKWFEENLQS-NYFKVESNGLFQEAERRMVSFNNSD---ESPFPMKLLK 89

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
           I     F   +H D+LG IL  GI R KIGD+++  E      V  E+ +++I +LE++ 
Sbjct: 90  IENTSKFTSLTHRDYLGGILSLGIERNKIGDLLV-SENACYLPVHEEVEEFIIFNLERIA 148

Query: 217 NVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
              V C    +  L++ P    SFK    + +SLR D + S     SR+K   +I  G V
Sbjct: 149 --KVKCNVKIIDNLDFIPKF--SFKEELVLVSSLRADGIVSKITNASRTKAQGMIEQGQV 204

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 321
            +N+  +      L++ D +++ G G+  +G+ + +++ GK  + + +Y
Sbjct: 205 LLNYAKIKDKSQELKSEDRITIRGFGKFILGDCVGNSKSGKVKLIIKKY 253


>gi|224541714|ref|ZP_03682253.1| hypothetical protein CATMIT_00886 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525318|gb|EEF94423.1| S4 domain protein [Catenibacterium mitsuokai DSM 15897]
          Length = 248

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 15/244 (6%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCR 136
           E V  IL+   +A   + ++ + FL P    + ES++  E    +K  A GG+  AE  R
Sbjct: 10  EFVSKILDYKDQALYSQRMILTQFLDPHQQSIVESVIGHE----LKVEADGGFDGAENKR 65

Query: 137 LSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK 194
           + +  P+    +P+   V    +  N  F    H D LG+++  GI R+ IGDI    E+
Sbjct: 66  VLIA-PDFYEFEPEDFKVTVFRVDYNDTFGKLKHSDVLGALMHLGIKRQCIGDI---NEE 121

Query: 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALAS 254
              F  + E +DY+  +L ++   S+    +      +    TK+   I +SLR+D + +
Sbjct: 122 PLSFACIKENSDYIRMNLTRIKRSSIHLVEMEERLSIHADTYTKT--VIVSSLRLDKMVA 179

Query: 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
           A F +SR+K V+ I    V++N+  +           I+S+   GR+KI   +  T++  
Sbjct: 180 ALFGISRNKAVDAIHGQYVKLNYKVIEDISKICDNNAIISLRHHGRVKIFITDRRTKQDN 239

Query: 314 FAVE 317
           + +E
Sbjct: 240 YVIE 243


>gi|169351196|ref|ZP_02868134.1| hypothetical protein CLOSPI_01975 [Clostridium spiroforme DSM 1552]
 gi|169292258|gb|EDS74391.1| S4 domain protein [Clostridium spiroforme DSM 1552]
          Length = 252

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 13/243 (5%)

Query: 81  VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
           VK ILE   +A  R+ ++ + FL P         + K  ++  +  GG   +E  R+ + 
Sbjct: 12  VKKILEFKDQALDRQRIVLTKFLNPYHQSIVHSVIGKSDELIVLENGGLINSETKRMIIA 71

Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 198
             + +    D +IV  + IT    F   +H D LG+++  G+ RE  GDI    E    F
Sbjct: 72  PAYYQIEQDDFEIVL-VKITYAKPFGKLTHRDILGALMSLGVKRELFGDIY---EYHDVF 127

Query: 199 LVVPELA--DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEASLRVDALASA 255
            VV +L   DY+  +L  + +   S  ++ L     E     + KT I +S R+D + S+
Sbjct: 128 YVVMDLKIYDYVKNNLNLIKH---SKVKLSLSNESIEIIHQYTCKTFIVSSFRLDKIVSS 184

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
            + L RSK VN I +G V+VN   V +        DI+S+   GR+KI +    T++  +
Sbjct: 185 IYNLPRSKAVNYIRSGFVKVNHKEVEEISYLCNNSDIISLRRYGRVKIVDTKRVTKQNNY 244

Query: 315 AVE 317
            +E
Sbjct: 245 VIE 247


>gi|419814631|ref|ZP_14339401.1| hypothetical protein GMD2S_05075 [Streptococcus sp. GMD2S]
 gi|404471572|gb|EKA16081.1| hypothetical protein GMD2S_05075 [Streptococcus sp. GMD2S]
          Length = 263

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQAS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|357637966|ref|ZP_09135839.1| S4 domain protein [Streptococcus urinalis 2285-97]
 gi|418417463|ref|ZP_12990658.1| hypothetical protein HMPREF9318_01406 [Streptococcus urinalis
           FB127-CNA-2]
 gi|357586420|gb|EHJ55828.1| S4 domain protein [Streptococcus urinalis 2285-97]
 gi|410871382|gb|EKS19330.1| hypothetical protein HMPREF9318_01406 [Streptococcus urinalis
           FB127-CNA-2]
          Length = 262

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           +A + I+ N  F    HG  LG+++   GI REKIGDI +  +  AQ LV   +   L  
Sbjct: 89  LALIEISYNAKFNHLKHGQILGTLINELGIKREKIGDIYVH-DGFAQVLVDCSIVALLKQ 147

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           S+ ++    VS   I            ++ + + +S+R+D + ++ FKLSR++ ++LI +
Sbjct: 148 SITRIARAKVSVKEISYNQFVRPEIANQTIELLLSSMRLDKIVASTFKLSRNQAISLIES 207

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 317
             V+VN+    K    L   D++SV G GRI + E   ++ + K K  VE
Sbjct: 208 DRVKVNYRPKNKISEQLTIDDLISVRGFGRIYLKEDHGLSKSGKHKVVVE 257


>gi|289765067|ref|ZP_06524445.1| RNA binding protein [Fusobacterium sp. D11]
 gi|336401695|ref|ZP_08582457.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
 gi|336419702|ref|ZP_08599957.1| RNA binding protein [Fusobacterium sp. 11_3_2]
 gi|423137340|ref|ZP_17124983.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
           subsp. animalis F0419]
 gi|289716622|gb|EFD80634.1| RNA binding protein [Fusobacterium sp. D11]
 gi|336160796|gb|EGN63828.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
 gi|336163022|gb|EGN65964.1| RNA binding protein [Fusobacterium sp. 11_3_2]
 gi|371960273|gb|EHO77933.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
           subsp. animalis F0419]
          Length = 241

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +A +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  + D     V    I     F    H  +LG+ILG GI RE +GD+I++ ++ 
Sbjct: 58  AV-YPEYFSEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNDEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  V    I     E E P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+         +  GD V +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRASSVNYIDLGNVQVNYEIQRGKSYRISVGDTVIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|449953891|ref|ZP_21809141.1| hypothetical protein SMU36_00920 [Streptococcus mutans 4VF1]
 gi|449171352|gb|EMB74016.1| hypothetical protein SMU36_00920 [Streptococcus mutans 4VF1]
          Length = 262

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F   +H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +   KLSR +   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIATVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|403667697|ref|ZP_10932997.1| hypothetical protein KJC8E_02927 [Kurthia sp. JC8E]
          Length = 263

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 101 DFLTPPVLKESMMALEKLADVKAVAQGGYP-QAERCRLSVGHPEALT--SDPDIVAALSI 157
           DFL P  +K     + K  DV     G +    ER R  + +P  +    D   +  L +
Sbjct: 36  DFLDPRQVKIIEAIIGKNEDVHFSVDGAFGGNVERVR-GMLYPSYIVPVKDDFQLCVLGV 94

Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
                F    H D LG++L  GI R K GDI +  E   QF+V  E+ADY+  +L  +G 
Sbjct: 95  RYASKFVQLKHPDVLGALLHLGIDRTKFGDIRIDSEM-VQFVVAQEVADYVRANLTTIGK 153

Query: 218 VSVSCTRIPLLAL--EYEPPRTKSFKTIEASLRVDALASAGF-KLSRSKLVNLISNGDVR 274
              +   +    L  E   P  +S  T  +SLR+D + ++ +  +SR K   LI  G V+
Sbjct: 154 SKATIIEVSEQQLIGESNDPWLESVVTT-SSLRLDTVIASCYPSISRQKAAMLIEAGRVK 212

Query: 275 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           VN+T   +N   L+  D++S+ G GR+ +  I   T+K K  +++
Sbjct: 213 VNYTVREQNAFELQEHDLLSIRGVGRLVLLSIEGHTKKEKIRLKI 257


>gi|332708244|ref|ZP_08428226.1| hypothetical protein LYNGBM3L_16620 [Moorea producens 3L]
 gi|332352968|gb|EGJ32526.1| hypothetical protein LYNGBM3L_16620 [Moorea producens 3L]
          Length = 219

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 5/127 (3%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
           ++LLK V ++   E+V  +++ A +A    EV+ +DFL+PPVL E     ++L +V+ +A
Sbjct: 5   EELLKSVENR---EDVARVIDQADQAIKTWEVVLTDFLSPPVLVEVAQQFQRLTEVQLLA 61

Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGI-ARE 183
            GGYPQAER RL +   E       + V  L I GNF F   +   FLG   G  I ARE
Sbjct: 62  WGGYPQAERQRLGIAREELPLDQSQVEVVGLDIAGNFLFDTATPPGFLGRNSGNWIGARE 121

Query: 184 KIGDIIL 190
             G   L
Sbjct: 122 DWGHYCL 128


>gi|260496850|ref|ZP_05815970.1| RNA binding protein [Fusobacterium sp. 3_1_33]
 gi|260196592|gb|EEW94119.1| RNA binding protein [Fusobacterium sp. 3_1_33]
          Length = 241

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +A +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  + D     V    I     F    H  +LG+ILG GI RE +GD+I++ ++ 
Sbjct: 58  AV-YPEYFSEDYLYFPVKYFKIIKKSRFINLEHKHYLGNILGLGIKREILGDLIVKNDEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  V    I     E E P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+         +  GD V +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRASSVNYIDLGNVQVNYEIQRGKSYRISVGDTVIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|322375671|ref|ZP_08050183.1| YlmH protein [Streptococcus sp. C300]
 gi|321279379|gb|EFX56420.1| YlmH protein [Streptococcus sp. C300]
          Length = 263

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|237743523|ref|ZP_04574004.1| RNA binding protein [Fusobacterium sp. 7_1]
 gi|229433302|gb|EEO43514.1| RNA binding protein [Fusobacterium sp. 7_1]
          Length = 241

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 22/252 (8%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +A +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFYFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  + D     V    I     F    H  +LG+ILG GI RE +GD+I++   G
Sbjct: 58  AV-YPEYFSEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKN--G 114

Query: 196 AQF-LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDA 251
             + +++  + D+L  +L ++ +  V    I     E E P+ + FK +    +SLR+D+
Sbjct: 115 ECYGIILENMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDS 169

Query: 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TR 310
           L S    LSR+  VN I  G+V+VN+         +  GD V +   G+ +I E N  T+
Sbjct: 170 LVSELTNLSRASSVNYIDLGNVQVNYEIQRGKSYRISVGDTVIIKKYGKFRIEEENGLTK 229

Query: 311 KGKFAVELIQYL 322
           K K  + + +Y+
Sbjct: 230 KDKVKLIVRKYI 241


>gi|310828905|ref|YP_003961262.1| hypothetical protein [Eubacterium limosum KIST612]
 gi|308740639|gb|ADO38299.1| hypothetical protein ELI_3337 [Eubacterium limosum KIST612]
          Length = 244

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 6/198 (3%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
           GG   A R  L + +P+ L +D      L++     F P  H + LG ++  GI RE +G
Sbjct: 51  GGTENAGRRMLCI-YPDYLEADTLEWPMLAVAFPKEF-PMDHRNVLGELMHLGITRECVG 108

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEA 245
           DI +  E+  Q +    L D++  +  KV   ++    + P L   +E  R K  + + A
Sbjct: 109 DINMNDEE-VQVVFAERLRDFITLNFTKVKGRTIKPEILEPDLIKTFEL-RFKRLELVAA 166

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           S R+D + +  +  SR   +  I    VRVN+  VTKN   ++ GD++S  GKG+  I E
Sbjct: 167 SDRLDGVINKIWGFSRQDSITYIKQRRVRVNYEAVTKNDYRIKNGDVISFRGKGKAVITE 226

Query: 306 INS-TRKGKFAVELIQYL 322
           +   T+KG   + + +Y+
Sbjct: 227 LGGVTKKGNLRLIVDKYI 244


>gi|257125826|ref|YP_003163940.1| RNA-binding S4 domain-containing protein [Leptotrichia buccalis
           C-1013-b]
 gi|257049765|gb|ACV38949.1| RNA-binding S4 domain protein [Leptotrichia buccalis C-1013-b]
          Length = 298

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE--KGAQFLVVPE-LADYLITS 211
           L I+ +  F+  SH DFLGS++G  I RE +GD+IL+ E  K + ++ V E +ADY+I+ 
Sbjct: 126 LKISIDSRFREYSHKDFLGSLMGLNIKRELMGDLILENEGRKISGYIPVSEKIADYIISE 185

Query: 212 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLSRSKLVNLISN 270
           L+++G  S     I        P      K I   S R+D++ S    LSR+K++  I  
Sbjct: 186 LKQIGKASCEIEIIDTKNKNVLPQYKYDNKLITVPSKRLDSIISTITNLSRTKVIEPIEK 245

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELIQYL 322
           G V V++         L  G ++++ G G+ K+  +   T+KGK  + + +Y+
Sbjct: 246 GKVLVDYVEEKDKSRMLEIGSLITIRGFGKYKLFLDKGETKKGKERILVKKYI 298


>gi|410724123|ref|ZP_11363322.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
           MBC34-26]
 gi|410602409|gb|EKQ56889.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
           MBC34-26]
          Length = 258

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
           D+K  + G +  AER  +S  +     ++P  +  + I     F   SH DFLG IL  G
Sbjct: 60  DLKIESNGLFEDAERRMISFNNS---YNNPFPMKLIKIENTSKFSKLSHRDFLGGILSLG 116

Query: 180 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 239
           I R KIGD+++         +  E+ +Y+I +++++  V  +   I    L    P+ + 
Sbjct: 117 IERNKIGDLLVDNN-TCYVPIHEEIENYIIYNIDRISKVVCNVKVIDDFEL---LPKVQ- 171

Query: 240 FK---TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
           FK    + +SLR+D + S    +SRSK   +I  G V +N+  +      L+  + +++ 
Sbjct: 172 FKEEIILVSSLRIDGIVSKIINISRSKASEMIEQGLVLINYVKIKDKSYELKGEERITIR 231

Query: 297 GKGRIKIGE-INSTRKGKFAVELIQY 321
           G G+  +G+ I +++ GK  + + +Y
Sbjct: 232 GYGKFILGDSIGNSKSGKIKIVIKKY 257


>gi|331001804|ref|ZP_08325326.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412778|gb|EGG92161.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 249

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 19/243 (7%)

Query: 84  ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
           IL++AR+A  +  V +S FL             +L ++K +  GGY +AER  +     E
Sbjct: 12  ILDLARKAYFKNVVTYSAFLNLYEQTIFEQIQNELPNIKNIMFGGYSEAERKIVCFYFDE 71

Query: 144 ALTSDPDIVAALSITGNFGFQPC--------SHGDFLGSILGTGIAREKIGDIILQGEKG 195
               D D++  + I       PC        +H DFLG+++  GI R  IGDI +  +  
Sbjct: 72  --IPDFDMLEYIKIF------PCNKKFADNLTHRDFLGALMNLGIERHMIGDICID-DNT 122

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
           A  +    +++ +I  L  V +  V   +  + +L+    R ++ +   +S R+D++  +
Sbjct: 123 AHIITFKTMSETIINDLSMVKHTKVVLEKENIDSLK-NINRLENKRINISSERLDSIIGS 181

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 314
            + +SRSK+   I  G V +N      +   ++ GDI++V G GR +   I++ ++KG+ 
Sbjct: 182 IYNISRSKVNLYIDAGKVFINSKQCFSHSAKIKDGDIITVRGLGRARFLGISALSKKGRL 241

Query: 315 AVE 317
             E
Sbjct: 242 FAE 244


>gi|222151012|ref|YP_002560165.1| hypothetical protein MCCL_0762 [Macrococcus caseolyticus JCSC5402]
 gi|222120134|dbj|BAH17469.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 257

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           IE VK + ++  +A S+   + + FL P   +  +  L    D+     GG  + ER R 
Sbjct: 12  IETVKVLEDLVAQAESQYAPILTHFLDPR-QQFILTTLVNRTDLNVSFYGGSGERERVR- 69

Query: 138 SVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           ++ +PE       D  V+A  +     F   +H + LG+++  G  RE +GDII   E  
Sbjct: 70  ALIYPEYYEVQQEDFEVSAFKVKYAQKFVTLTHRNVLGALMQLGFKREYLGDIITGDE-- 127

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
            Q ++   L DYL+  L K+   +V    I    L       +S     +SLR+D + + 
Sbjct: 128 LQIVIASHLNDYLVQHLTKLKGSTVKLVAIDADTLNEAIETYQSHHATVSSLRLDVVVAE 187

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 313
             + SR+     I  G ++VN   + K    + +GD +S+ G GR ++ EI + T+K K
Sbjct: 188 MMRKSRAIAQKHIEAGHIKVNHVIIDKVSFVIASGDTLSIKGYGRAQLTEIGDLTKKNK 246


>gi|312867091|ref|ZP_07727301.1| S4 domain protein [Streptococcus parasanguinis F0405]
 gi|311097220|gb|EFQ55454.1| S4 domain protein [Streptococcus parasanguinis F0405]
          Length = 263

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 13/245 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
           E +   +E++ R   R  V  + FL P      +  L  +A    ++  A     + E  
Sbjct: 16  EFIDRCIELSERVVERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQKMEYA 71

Query: 136 RLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
           ++ V  P+    DP    +A L +     F   +H   LG+I+   G+ R+  GDI L  
Sbjct: 72  KVIVA-PDYYQLDPSDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTS 129

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           +   Q  V      Y +  ++K+  V V    +PL         ++    + +S R+D +
Sbjct: 130 DGKIQVFVEQRFVPYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKV 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK- 311
            +  FKLSRS+   LIS+G V+VN+ T +     +   D+VSV   GR+KI   N   K 
Sbjct: 190 IAGTFKLSRSQASQLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKS 249

Query: 312 GKFAV 316
           GK+ V
Sbjct: 250 GKYKV 254


>gi|323489507|ref|ZP_08094734.1| hypothetical protein GPDM_09180 [Planococcus donghaensis MPA1U2]
 gi|323396638|gb|EGA89457.1| hypothetical protein GPDM_09180 [Planococcus donghaensis MPA1U2]
          Length = 261

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 14/251 (5%)

Query: 74  DKNAIEEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQ 131
           ++  IE+V   L   R    R     +DFL P    + E++M      DV+ +  G +  
Sbjct: 12  EQQFIEQVSGWL---REVEDRYSPKLTDFLDPRQRFIVEAVMGS---TDVRMMTSGVFKD 65

Query: 132 AERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
           AER R  L   + E    D +I     +     F    H D LGSI+  G+ R K GDI 
Sbjct: 66  AERQRVLLYPSYFEPQQEDFNI-TVFELKYPSKFVNLRHPDILGSIMSLGLDRSKFGDIR 124

Query: 190 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLR 248
           +  ++  Q  V+ E+  YL ++      V V    +  L  +              +S+R
Sbjct: 125 IDNDR-VQLAVMNEIGPYLQSNFVSAAKVKVQLNEVTDLTEMIETSEEWTEESYTVSSMR 183

Query: 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN- 307
           +D + S+ + +SR K   LI  G V+VNWT   +    L   D++S  G GR+++  I  
Sbjct: 184 LDTVMSSVYNISRQKAAALIHGGKVKVNWTLQDQPSFELHESDMISSRGFGRVRLIMIEG 243

Query: 308 STRKGKFAVEL 318
            T+K K  +++
Sbjct: 244 RTKKDKVRLQI 254


>gi|310778916|ref|YP_003967249.1| RNA-binding S4 domain-containing protein [Ilyobacter polytropus DSM
           2926]
 gi|309748239|gb|ADO82901.1| RNA-binding S4 domain protein [Ilyobacter polytropus DSM 2926]
          Length = 258

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 117/234 (50%), Gaps = 21/234 (8%)

Query: 98  LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 154
           +H+    PP +  ++  ++    ++  ++G   ++E+  + +    + E     P   A 
Sbjct: 35  IHTKIFFPPEVWSTLENMKNSLGIEVESKGVKQESEKRVILIKPLAYGEYFEDYP--FAY 92

Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-LVVPELADYLITSLE 213
             I G   F+   H  FL +I+G GI RE +GD+I++  +G  + ++  +L ++L  +L+
Sbjct: 93  FEIRGGSKFKELEHRHFLAAIMGLGIKREMLGDLIVK--EGVCYGVIFRDLFNFLENNLK 150

Query: 214 KVGNVSVSCTR-----IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 268
            +G + V  +      IP +  E           + +SLR+D++ +A  + SRS+   LI
Sbjct: 151 VIGKIKVEVSETEEKNIPEMEFE-------EITYLVSSLRLDSIVAAITEKSRSQATELI 203

Query: 269 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 321
             G V +N++   +   +++ GDI++V  KG+    ++   ++KGK  V L +Y
Sbjct: 204 REGTVSLNYSVRREKDASIKDGDIITVRRKGKFIFEKVTGVSKKGKQRVVLKKY 257


>gi|262037759|ref|ZP_06011201.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
 gi|261748231|gb|EEY35628.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
          Length = 885

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 24/224 (10%)

Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV----------GHPEALTSDP 149
            +F TP + K+     EK+ ++K  A G +  ++R +++              E + SD 
Sbjct: 38  EEFYTPNIWKK---LTEKIENIKIEANGIFENSDRRQIAFIPEGFYGKNSSGIEEIYSDA 94

Query: 150 D---------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 200
           D             L I  N  F+   H DFLGS+ G  I RE +GD+I   E  A   V
Sbjct: 95  DGDNKNSAEFPSKLLKIKINSRFREYGHKDFLGSLTGLNIKRELMGDLIFDKE-TAYVPV 153

Query: 201 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKL 259
             +++DY++T L+++G    S     +   E  P      K I   S R+D++ +A   L
Sbjct: 154 SDKISDYILTELKQIGRDKCSVEEEDIKNREIIPEYKYDDKFITVPSKRLDSIVAAITLL 213

Query: 260 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
           SR+K++  I  G V V++         + TG ++++ G G+ K+
Sbjct: 214 SRNKVIEPIEKGKVLVDYYEEKDKSKIIETGSLITIRGYGKYKL 257


>gi|315658522|ref|ZP_07911394.1| S4 domain-containing protein YlmH [Staphylococcus lugdunensis
           M23590]
 gi|385784647|ref|YP_005760820.1| hypothetical protein SLUG_17090 [Staphylococcus lugdunensis
           N920143]
 gi|418414322|ref|ZP_12987537.1| hypothetical protein HMPREF9308_00702 [Staphylococcus lugdunensis
           ACS-027-V-Sch2]
 gi|418637505|ref|ZP_13199824.1| S4 domain protein [Staphylococcus lugdunensis VCU139]
 gi|315496851|gb|EFU85174.1| S4 domain-containing protein YlmH [Staphylococcus lugdunensis
           M23590]
 gi|339894903|emb|CCB54204.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
 gi|374838751|gb|EHS02286.1| S4 domain protein [Staphylococcus lugdunensis VCU139]
 gi|410876929|gb|EKS24826.1| hypothetical protein HMPREF9308_00702 [Staphylococcus lugdunensis
           ACS-027-V-Sch2]
          Length = 264

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 5/199 (2%)

Query: 120 DVKAVAQGG-YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
           D++    GG Y + +R  ++  + E    D ++   L I     F    H   LG+++  
Sbjct: 62  DIQVAFNGGLYAERQRAIIAPSYYEPRVEDFEL-CCLEIDYPEKFVTLQHQHVLGTLMSL 120

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           GI RE++GDI     +  QF++  +L  Y++  L ++   +V    IPL  +       K
Sbjct: 121 GIEREQVGDI--HVAQRIQFVLTRQLESYIMMELTRIKGATVKLNSIPLQDMIQSEENWK 178

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
              T  +++R+D +       SRS    LI    V+VN T V  +   L   D++S+ G 
Sbjct: 179 IQHTTVSAMRLDVVLKDMIHKSRSIAKQLIEKKRVKVNHTIVEASDFQLEPNDLLSIQGY 238

Query: 299 GRIKIGEI-NSTRKGKFAV 316
           GR ++ EI   T+K K+ +
Sbjct: 239 GRAQLLEIGGRTKKDKYYI 257


>gi|296328063|ref|ZP_06870597.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154839|gb|EFG95622.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 241

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 24/253 (9%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +  +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGIKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           +V +PE  T D    P  V    I     F    H  +LG+IL  GI RE +GD+I++ +
Sbjct: 58  AV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYLGNILSLGIKREILGDLIVKND 114

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
           +    +++  + D+L  +L ++ +  V    I     E E P+ + FK +    +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPVEIIEID----EKEVPQNE-FKELNIRLSSLRLD 168

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-T 309
           +L S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ KI + N  T
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYKVSIGDTIIIKKYGKFKIEKENGLT 228

Query: 310 RKGKFAVELIQYL 322
           +K K  + + +Y+
Sbjct: 229 KKDKLKLIVRKYI 241


>gi|329769776|ref|ZP_08261177.1| hypothetical protein HMPREF0433_00941 [Gemella sanguinis M325]
 gi|328838138|gb|EGF87756.1| hypothetical protein HMPREF0433_00941 [Gemella sanguinis M325]
          Length = 256

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 3/202 (1%)

Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
           S +A     D K    GGY  +ER +  +   E    D DIV  L    N  F    H +
Sbjct: 47  SKVAAYNYPDYKVDFFGGYEGSERKKAKIISNEYYDIDYDIVC-LKANYNNKFNKIEHRN 105

Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
            LG++   GI   ++GDI++  E      V  E+AD++   L K+G V++    +  L +
Sbjct: 106 VLGTVHNLGINFNRVGDIVV-SESSIYIFVDREIADFIKMELTKIGRVNLEFKEVSELDI 164

Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG 290
           +    + + F+ + +S R+D++ +     SRSK+   +    V++N   V          
Sbjct: 165 DI-KKQFQDFEIVTSSFRIDSIVAKITNKSRSKIKEFLEQEFVKLNHVIVKNGEKNCSVD 223

Query: 291 DIVSVSGKGRIKIGEINSTRKG 312
           DI+S+   GR  I      ++ 
Sbjct: 224 DIISIRKYGRFTIKSFEQNKRS 245


>gi|395242180|ref|ZP_10419179.1| S4 domain protein [Lactobacillus pasteurii CRBIP 24.76]
 gi|394480541|emb|CCI85419.1| S4 domain protein [Lactobacillus pasteurii CRBIP 24.76]
          Length = 267

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 7/233 (3%)

Query: 80  EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV-AQGGYPQAERCR-- 136
           ++  I+++  R     + + + FL P    +  +  E +     + + GGY  +ER R  
Sbjct: 21  DIDEIIDIYNRLMYSDDEILTSFLDPA---QRYILNEVIGQASLIQSYGGYKDSERRRVY 77

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           LS      L  D +IV  L I     F    H D LG++  +G++    GDII  G    
Sbjct: 78  LSSNWNGILPDDFEIVP-LEIEYPSKFISLRHSDILGTLANSGVSLNTFGDIIGDGMGRW 136

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           QF V  +LA +    + ++G   V   +I    +      +     I +S+R+DA+ S+ 
Sbjct: 137 QFFVKKDLAVFFTDQISRIGKNKVRIKQISPKEVLVPEDNSIEVTAIVSSMRLDAILSSL 196

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST 309
            K SR ++  LI  G  ++NW     +   ++  DI+S+   GR ++ ++ +T
Sbjct: 197 SKQSRVQIKQLIEGGQAKLNWLETKNSNIIVKVNDIISLRHLGRAQVLDVQAT 249


>gi|420185503|ref|ZP_14691595.1| YlmH protein [Staphylococcus epidermidis NIHLM040]
 gi|394254489|gb|EJD99458.1| YlmH protein [Staphylococcus epidermidis NIHLM040]
          Length = 220

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+         ++   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELHYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|19746466|ref|NP_607602.1| RNA binding protein [Streptococcus pyogenes MGAS8232]
 gi|19748670|gb|AAL98101.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 264

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 14/227 (6%)

Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 155
           ++FL P   +E M+  +L  L D+K      Y  +E  R+ +  G+ +   SD  I A +
Sbjct: 38  TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93

Query: 156 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 213
            I+    F   +H   LG+++   G+ R   GD+ +  E G AQ ++  EL DY + ++ 
Sbjct: 94  EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+   SV    +    L      +++   + +S R+D + +   K SR++++ LI    +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211

Query: 274 RVNWTTVTKNGTTLRT-GDIVSVSGKGRIKIGEINS-TRKGKFAVEL 318
           +VN+    K    L   GD+VS+ G GR  +   N  T+ GK  + L
Sbjct: 212 KVNYRLANKASDNLVIGGDMVSIRGHGRFTLLADNGVTKHGKQKITL 258


>gi|317131685|ref|YP_004090999.1| RNA-binding S4 domain-containing protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469664|gb|ADU26268.1| RNA-binding S4 domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 248

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
           K AD   +  GGY  AER  L V  P+    D       ++   +     +H DFLG++L
Sbjct: 46  KHADASFLLWGGYADAERRMLGV-FPQEEVPDGAAFPITAVQIIWKGAELNHRDFLGALL 104

Query: 177 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 236
             G+ REK+GD++++      FL    +A ++ ++L +VG + VSC        E +  R
Sbjct: 105 SLGLKREKVGDLVVRSNDCVAFL-ENAVAAFVRSNLSRVGRIGVSCE-----PYEGDVRR 158

Query: 237 TKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293
              F  I    AS R+D + +A    SR++  + I+ G V +++ TVT     +  G  +
Sbjct: 159 EAHFAEIGGTVASERLDCVVAALTGCSRTQAEDGITAGRVALDFRTVTDRACRVPPGASL 218

Query: 294 SVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
           S+ G GR  + E+   TRKG+      +Y+
Sbjct: 219 SIRGCGRFVVDELGPPTRKGRLRFAARKYV 248


>gi|297588313|ref|ZP_06946956.1| probable RNA binding protein [Finegoldia magna ATCC 53516]
 gi|297573686|gb|EFH92407.1| probable RNA binding protein [Finegoldia magna ATCC 53516]
          Length = 258

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 10/233 (4%)

Query: 95  REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 150
           + +  +DF+ P  ++ +   L    DV  +        E   + +     + E   +  D
Sbjct: 31  KTIYATDFMNPKEIEYATSILNAETDVGYMVTNCPVNCENKIIIMWDRYCYSEEYINMFD 90

Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
            +  L I  +   Q  +H D LG++L  GI REKIGDI     K         +  +L  
Sbjct: 91  YIGLLEIQTD---QEITHRDILGAVLNLGINREKIGDIFTHN-KRFYLCATNTMIKFLNL 146

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
           +L K+   ++S T I    +E +    KSF  I  S R+D L S    +SR     +I N
Sbjct: 147 NLTKIKKFNIS-TSIIEENIEKDEEMFKSFTGIINSERLDCLVSEMANISRKDAQIMIKN 205

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQYL 322
             +++N+  ++    ++    +VS+ G GR ++ E + ST+K K  ++ I+Y+
Sbjct: 206 KKIKLNYEVISNTSKSVEENSLVSIRGYGRYRLLEYLGSTKKDKLRIKYIKYI 258


>gi|314933367|ref|ZP_07840732.1| YlmH protein [Staphylococcus caprae C87]
 gi|313653517|gb|EFS17274.1| YlmH protein [Staphylococcus caprae C87]
          Length = 262

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILG 177
           D+  V   G P AER R  +  P    + P+   ++ L I     F    H   LG+++ 
Sbjct: 59  DMLKVNFYGGPYAERKRAIIA-PSYYEAQPEDFELSLLRIDYPEKFVSIHHQHVLGTLMS 117

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+ G+   QF++   L  Y++  L ++   +V    IP+  +       
Sbjct: 118 LGIEREQLGDIIVAGD--IQFVLTERLESYIMFELNRIKGATVKLNSIPIKDMIQSEENW 175

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K   T  +++R+D +       SR+    LI    V+VN T +      L   D++S+ G
Sbjct: 176 KIHSTTVSAMRLDVVLKDMIHKSRNIAKQLIEKKRVKVNHTIIDTPDFQLEQNDLLSIQG 235

Query: 298 KGRIKIGEI-NSTRKGKFAV 316
            GR +I +I   T+K K  +
Sbjct: 236 FGRAQITQIGGRTKKDKLHI 255


>gi|418624936|ref|ZP_13187596.1| S4 domain protein [Staphylococcus epidermidis VCU125]
 gi|420172808|ref|ZP_14679306.1| YlmH protein [Staphylococcus epidermidis NIHLM067]
 gi|374826201|gb|EHR90109.1| S4 domain protein [Staphylococcus epidermidis VCU125]
 gi|394241485|gb|EJD86899.1| YlmH protein [Staphylococcus epidermidis NIHLM067]
          Length = 220

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPENFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKNRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|418312632|ref|ZP_12924141.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21334]
 gi|365238277|gb|EHM79114.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21334]
          Length = 259

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +     + 
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEKW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|19703517|ref|NP_603079.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713607|gb|AAL94378.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 241

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 125/251 (49%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +  +   +++S+   P     S +   K + +K   +G   + E+  L
Sbjct: 5   LEKIENYIKLAEKTDT---IIYSNQFFPI----SQLNNLKYSGLKFSFKGLNEECEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  T D     V    I     F    H  +LG+IL  GI RE +GD+I++ ++ 
Sbjct: 58  AV-YPECFTEDYLYFPVKYFKIIKKSKFISLEHKHYLGNILSLGIKREILGDLIVKNDEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  V    I     E E P  + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPVEIIEID----EREVPENE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRAVSVNYIDLGNVQVNYEIQREKSYKVSLGDTIIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKLKLIVRKYI 241


>gi|420165270|ref|ZP_14671974.1| YlmH protein [Staphylococcus epidermidis NIHLM088]
 gi|394236437|gb|EJD81971.1| YlmH protein [Staphylococcus epidermidis NIHLM088]
          Length = 220

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+   ++   +     F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELSLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|319947482|ref|ZP_08021714.1| S4 domain-containing protein YlmH [Streptococcus australis ATCC
           700641]
 gi|417919819|ref|ZP_12563343.1| S4 domain protein [Streptococcus australis ATCC 700641]
 gi|319746422|gb|EFV98683.1| S4 domain-containing protein YlmH [Streptococcus australis ATCC
           700641]
 gi|342831796|gb|EGU66106.1| S4 domain protein [Streptococcus australis ATCC 700641]
          Length = 262

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 129 YP-QAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIG 186
           YP +  R  L+  + +   SD +I + L +     F   SH   LGS+L   GI R+  G
Sbjct: 65  YPTEYARVILAPSYYQLEASDFEI-SLLEVLYPDKFYRLSHSQVLGSLLHQLGIERKSFG 123

Query: 187 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL---LALEYEPPRTKSFKTI 243
           DI++ G+      V    + Y   +L+K+   SV    I     +++E EP + K    +
Sbjct: 124 DILV-GQGKIHIYVDQRFSSYFKENLKKIAKASVKIREIDCRERISVE-EPSKFKDL--L 179

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK- 302
             S+R+D L ++ FKL+RS  V L+ +G V+VN+ T+      ++  D++SV   GR K 
Sbjct: 180 VTSVRLDKLVASTFKLARSVAVQLVQSGQVKVNYATIDNPSRMIQVADLISVRKYGRFKM 239

Query: 303 IGEINSTRKGKFAV 316
           + E   ++ GK+ +
Sbjct: 240 LSENGLSKSGKYKL 253


>gi|400290788|ref|ZP_10792815.1| hypothetical protein SRA_07661 [Streptococcus ratti FA-1 = DSM
           20564]
 gi|399921579|gb|EJN94396.1| hypothetical protein SRA_07661 [Streptococcus ratti FA-1 = DSM
           20564]
          Length = 262

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 6/236 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
           E V+   ++ ++A        +DFL P  +   M ++    D+K      +  +E  RL 
Sbjct: 16  ELVEKAYDLIKQAEDTYSFCLTDFLNPREIA-VMKSIVGQTDLKCYVSSDFIPSEYARLL 74

Query: 139 VGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG 195
           +  P   + D  D  ++ L I  N  F   +H   +G+++   GI R  +GDI++Q E  
Sbjct: 75  IA-PAYYSLDLADFGISLLDIKYNSKFNHLTHAQIMGTLINKLGIERHILGDILVQ-ENR 132

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 255
           AQ  V   +  YL   + K+G  +V    +P          TK    + +S+R+D + +A
Sbjct: 133 AQVFVEKSMVSYLSIQVSKIGRAAVIFEEVPFDRQLENQSSTKEVDILASSMRLDKIIAA 192

Query: 256 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
             K+SR     LI +  V++++    K    +  G+++SV G GR  +   N   K
Sbjct: 193 VLKISRGTASKLIESEKVKLDYLIQPKVSHLVEVGNLISVRGYGRFTVKRDNGFSK 248


>gi|330718664|ref|ZP_08313264.1| cell division protein [Leuconostoc fallax KCTC 3537]
          Length = 261

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 87  MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 146
           +++ +   R +L + FL P       M  + + D+     GG  +AE  R ++  PE  +
Sbjct: 25  LSQSSDEYRPIL-TPFLNPREQYILKMVGQPIEDLNIFFDGGSVEAESQR-AIITPEYFS 82

Query: 147 SDP-DIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 204
            D  D    L  I     F   SH   LG++LG G+ R+ IGDI L  E   Q +V   +
Sbjct: 83  KDNLDFEMTLFQIDYPIKFTTLSHPQILGALLGLGLQRKAIGDI-LNDEHIWQVMVDKRI 141

Query: 205 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 264
             Y+  +  KVG  +V  T +PL  +       +    + +SLR+D L +A + LSR   
Sbjct: 142 FTYIQQNFVKVGRTTVKVTALPLNKMIDTSKAWEEQFLLVSSLRLDTLVAASYHLSRVVA 201

Query: 265 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF-AVELI 319
             +I +G VR+NWT V K  + +   DIVSV   GR ++  ++  T+K K  A+E I
Sbjct: 202 KQMIESGQVRLNWTVVEKPDSLITINDIVSVHHYGRFQLKGLDGRTKKDKIKAIENI 258


>gi|418888981|ref|ZP_13443117.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1524]
 gi|377754491|gb|EHT78400.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1524]
          Length = 259

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P  ER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+T D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQTNDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|450137355|ref|ZP_21871594.1| hypothetical protein SMU89_01932 [Streptococcus mutans NLML1]
 gi|449235429|gb|EMC34387.1| hypothetical protein SMU89_01932 [Streptococcus mutans NLML1]
          Length = 262

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 154
           ++FL P    V+K S++   KL   +      +  +E  RL +   + E   +D  I + 
Sbjct: 37  TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91

Query: 155 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I  N  F    H   LG+++   GI R  +GDII+Q E  AQ  +   +  YL   + 
Sbjct: 92  LEINYNSKFNQLIHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           K+G  +V    IP           +    + +S+R+D + +   KLSR +   LI +  V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIATVLKLSRRQANQLIESEKV 210

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 312
           ++N+    K    +  GD++SV G GR  I   N   KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249


>gi|293366844|ref|ZP_06613520.1| S4 domain-containing protein YlmH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|417660116|ref|ZP_12309707.1| S4 domain protein [Staphylococcus epidermidis VCU045]
 gi|417909732|ref|ZP_12553465.1| S4 domain protein [Staphylococcus epidermidis VCU037]
 gi|417910811|ref|ZP_12554527.1| S4 domain protein [Staphylococcus epidermidis VCU105]
 gi|418616643|ref|ZP_13179567.1| S4 domain protein [Staphylococcus epidermidis VCU120]
 gi|418622161|ref|ZP_13184917.1| S4 domain protein [Staphylococcus epidermidis VCU123]
 gi|418628976|ref|ZP_13191492.1| S4 domain protein [Staphylococcus epidermidis VCU127]
 gi|420163469|ref|ZP_14670216.1| YlmH protein [Staphylococcus epidermidis NIHLM095]
 gi|420167548|ref|ZP_14674200.1| YlmH protein [Staphylococcus epidermidis NIHLM087]
 gi|420182861|ref|ZP_14688994.1| YlmH protein [Staphylococcus epidermidis NIHLM049]
 gi|420187603|ref|ZP_14693623.1| YlmH protein [Staphylococcus epidermidis NIHLM039]
 gi|420194071|ref|ZP_14699900.1| YlmH protein [Staphylococcus epidermidis NIHLM021]
 gi|420197083|ref|ZP_14702807.1| YlmH protein [Staphylococcus epidermidis NIHLM020]
 gi|420211917|ref|ZP_14717273.1| YlmH protein [Staphylococcus epidermidis NIHLM001]
 gi|420214328|ref|ZP_14719607.1| YlmH protein [Staphylococcus epidermidis NIH05005]
 gi|420216158|ref|ZP_14721380.1| YlmH protein [Staphylococcus epidermidis NIH05001]
 gi|420222017|ref|ZP_14726942.1| S4 domain protein [Staphylococcus epidermidis NIH08001]
 gi|420224879|ref|ZP_14729717.1| S4 domain protein [Staphylococcus epidermidis NIH06004]
 gi|420226982|ref|ZP_14731755.1| S4 domain protein [Staphylococcus epidermidis NIH05003]
 gi|420229304|ref|ZP_14734010.1| S4 domain protein [Staphylococcus epidermidis NIH04003]
 gi|291319145|gb|EFE59515.1| S4 domain-containing protein YlmH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329734440|gb|EGG70753.1| S4 domain protein [Staphylococcus epidermidis VCU045]
 gi|341652341|gb|EGS76129.1| S4 domain protein [Staphylococcus epidermidis VCU037]
 gi|341654999|gb|EGS78735.1| S4 domain protein [Staphylococcus epidermidis VCU105]
 gi|374820721|gb|EHR84797.1| S4 domain protein [Staphylococcus epidermidis VCU120]
 gi|374827536|gb|EHR91398.1| S4 domain protein [Staphylococcus epidermidis VCU123]
 gi|374834970|gb|EHR98601.1| S4 domain protein [Staphylococcus epidermidis VCU127]
 gi|394235158|gb|EJD80732.1| YlmH protein [Staphylococcus epidermidis NIHLM095]
 gi|394237576|gb|EJD83062.1| YlmH protein [Staphylococcus epidermidis NIHLM087]
 gi|394249324|gb|EJD94537.1| YlmH protein [Staphylococcus epidermidis NIHLM049]
 gi|394256045|gb|EJE00981.1| YlmH protein [Staphylococcus epidermidis NIHLM039]
 gi|394265890|gb|EJE10536.1| YlmH protein [Staphylococcus epidermidis NIHLM020]
 gi|394266769|gb|EJE11394.1| YlmH protein [Staphylococcus epidermidis NIHLM021]
 gi|394280427|gb|EJE24708.1| YlmH protein [Staphylococcus epidermidis NIHLM001]
 gi|394283693|gb|EJE27858.1| YlmH protein [Staphylococcus epidermidis NIH05005]
 gi|394290048|gb|EJE33918.1| S4 domain protein [Staphylococcus epidermidis NIH08001]
 gi|394292608|gb|EJE36350.1| YlmH protein [Staphylococcus epidermidis NIH05001]
 gi|394294282|gb|EJE37968.1| S4 domain protein [Staphylococcus epidermidis NIH06004]
 gi|394297483|gb|EJE41080.1| S4 domain protein [Staphylococcus epidermidis NIH05003]
 gi|394299070|gb|EJE42621.1| S4 domain protein [Staphylococcus epidermidis NIH04003]
          Length = 220

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|404482191|ref|ZP_11017418.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
           OBRC5-5]
 gi|404344352|gb|EJZ70709.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
           OBRC5-5]
          Length = 249

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 19/242 (7%)

Query: 85  LEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSV 139
           L++AR A  +  V +S FL      + E++   + L +++ V  GGY +AER   C    
Sbjct: 13  LDLARNAYFKNIVTYSMFLNLNEQAIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCD 70

Query: 140 GHPEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
             PE      D++  + ++  N  F    +H DFLG+++  GI R  +GDI +  +  A 
Sbjct: 71  NIPEF-----DMLEYIKVSPVNKKFADELTHRDFLGALMNLGIERRMVGDICI-ADNTAH 124

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAG 256
            +    +++ +I+ L  V +  V   R    A E +      +K I   S R+D++  + 
Sbjct: 125 IITFKSMSETIISELTTVKHTKVVLERES--ADELKAVNRVEYKKINIPSERLDSIIGSI 182

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFA 315
           + +SRSK+   I  G V +N      + + +++GDI++V G GR K +G   S++KG+  
Sbjct: 183 YNISRSKVNLYIDAGKVFINSRQCFSHSSKIKSGDIITVRGLGRAKFLGISASSKKGRLF 242

Query: 316 VE 317
            E
Sbjct: 243 AE 244


>gi|418965341|ref|ZP_13517118.1| S4 domain protein [Streptococcus constellatus subsp. constellatus
           SK53]
 gi|423069037|ref|ZP_17057825.1| hypothetical protein HMPREF9682_01046 [Streptococcus intermedius
           F0395]
 gi|355365437|gb|EHG13160.1| hypothetical protein HMPREF9682_01046 [Streptococcus intermedius
           F0395]
 gi|383342848|gb|EID21051.1| S4 domain protein [Streptococcus constellatus subsp. constellatus
           SK53]
          Length = 263

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 8/205 (3%)

Query: 121 VKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
           ++  +   Y  +E  ++ +   + E   SD +I   L I+    F   +H   +G++L  
Sbjct: 58  LQIFSSSDYYTSELAKVIIAPLYYELQVSDFEI-DLLEISYANKFHHLTHSQIMGTVLNQ 116

Query: 179 -GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI R+  GDI++   + AQ +V  +   + I  + ++   SV   ++    L      +
Sbjct: 117 LGIERKVFGDILVASGR-AQIMVDRKFTQFFIDHISRIAKTSVKLKQVDFSQLIAVQADS 175

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K    + +S+R+D + +A F+LSRS    LI+   VRVN++ +      L   D++SV G
Sbjct: 176 KLRDVLVSSMRLDKVLAASFRLSRSVATKLIATKQVRVNYSMLDNPSHHLLLNDLISVRG 235

Query: 298 KGRIKIGEINSTRKG---KFAVELI 319
            GR+K+   N   K    K  VEL+
Sbjct: 236 YGRVKVLRENGFSKNGKYKLTVELL 260


>gi|420209529|ref|ZP_14714966.1| YlmH protein [Staphylococcus epidermidis NIHLM003]
 gi|394278976|gb|EJE23288.1| YlmH protein [Staphylococcus epidermidis NIHLM003]
          Length = 220

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTKDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|416839232|ref|ZP_11902626.1| YlmH protein [Staphylococcus aureus O11]
 gi|416847396|ref|ZP_11907118.1| YlmH protein [Staphylococcus aureus O46]
 gi|323440963|gb|EGA98670.1| YlmH protein [Staphylococcus aureus O11]
 gi|323442280|gb|EGA99910.1| YlmH protein [Staphylococcus aureus O46]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSANFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|282910764|ref|ZP_06318567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282325369|gb|EFB55678.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIKREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|418325065|ref|ZP_12936275.1| S4 domain protein [Staphylococcus epidermidis VCU071]
 gi|365228971|gb|EHM70143.1| S4 domain protein [Staphylococcus epidermidis VCU071]
          Length = 220

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKHKLHI 213


>gi|386728870|ref|YP_006195253.1| RNA binding protein [Staphylococcus aureus subsp. aureus 71193]
 gi|387602464|ref|YP_005733985.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|404478529|ref|YP_006709959.1| hypothetical protein C248_1220 [Staphylococcus aureus 08BA02176]
 gi|418309681|ref|ZP_12921232.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21331]
 gi|418978567|ref|ZP_13526367.1| RNA binding protein [Staphylococcus aureus subsp. aureus DR10]
 gi|283470402|emb|CAQ49613.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|365237804|gb|EHM78643.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21331]
 gi|379993391|gb|EIA14837.1| RNA binding protein [Staphylococcus aureus subsp. aureus DR10]
 gi|384230163|gb|AFH69410.1| RNA binding protein [Staphylococcus aureus subsp. aureus 71193]
 gi|404440018|gb|AFR73211.1| hypothetical protein C248_1220 [Staphylococcus aureus 08BA02176]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|241889477|ref|ZP_04776776.1| putative S4 domain-containing protein [Gemella haemolysans ATCC
           10379]
 gi|241863784|gb|EER68167.1| putative S4 domain-containing protein [Gemella haemolysans ATCC
           10379]
          Length = 256

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 3/191 (1%)

Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
           S +     +D K    GG+  AER +  +   E    D DIV  L    N  F    H +
Sbjct: 47  SQIVAYNYSDFKVEFFGGFDDAERKKAKIISNEYYDVDYDIVC-LKAKFNNKFNRVEHRN 105

Query: 171 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 230
            LG++   GI   + GDII+  E      V  E+ADY+     K G V++   R+ L  +
Sbjct: 106 ILGAVHNLGINFNRFGDIIV-IENEVYIFVDEEIADYIAMEFTKAGRVNLDFQRVDLAEV 164

Query: 231 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG 290
             E  + + F+ + +S R+D++ +     SRSK+   +    +++N   +     T  + 
Sbjct: 165 GIEK-KYEDFEIVSSSFRIDSIVAKITNKSRSKVKEFLEQDFIKLNHVVLRNGEKTCTSE 223

Query: 291 DIVSVSGKGRI 301
           D +S+   GR 
Sbjct: 224 DTISIRKYGRF 234


>gi|417917500|ref|ZP_12561059.1| S4 domain protein [Streptococcus parasanguinis SK236]
 gi|342830137|gb|EGU64476.1| S4 domain protein [Streptococcus parasanguinis SK236]
          Length = 272

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERC 135
           E +   +E++ R   R  V  + FL P      +  L  +A    ++  A     + E  
Sbjct: 16  EFIDRCIELSERVVERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQKMEYA 71

Query: 136 RLSVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 192
           ++ V   + +   SD D+ A L +     F   +H   LG+I+   G+ R+  GDI L  
Sbjct: 72  KVIVASDYYQLDPSDFDL-ALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTS 129

Query: 193 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 252
           +   Q  V      Y +  ++K+  V V    +PL         ++    + +S R+D +
Sbjct: 130 DGKIQVFVEQRFVHYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKV 189

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK- 311
            +  FKLSRS+   LIS+G V+VN+ T +     +   D+VSV   GR+KI   N   K 
Sbjct: 190 IAGTFKLSRSQASQLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKS 249

Query: 312 GKFAV 316
           GK+ V
Sbjct: 250 GKYKV 254


>gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257427905|ref|ZP_05604303.1| YlmH [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430538|ref|ZP_05606920.1| YlmH protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433299|ref|ZP_05609657.1| YlmH protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257436141|ref|ZP_05612188.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903743|ref|ZP_06311631.1| YlmH protein [Staphylococcus aureus subsp. aureus C160]
 gi|282905507|ref|ZP_06313362.1| hypothetical protein SDAG_01131 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282913967|ref|ZP_06321754.1| YlmH protein [Staphylococcus aureus subsp. aureus M899]
 gi|282918889|ref|ZP_06326624.1| hypothetical protein SASG_00195 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924012|ref|ZP_06331688.1| hypothetical protein SARG_01553 [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501000|ref|ZP_06666851.1| hypothetical protein SCAG_01530 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509958|ref|ZP_06668667.1| hypothetical protein SAZG_01859 [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526547|ref|ZP_06671232.1| YlmH protein [Staphylococcus aureus subsp. aureus M1015]
 gi|297591365|ref|ZP_06950003.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|384867927|ref|YP_005748123.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|417888860|ref|ZP_12532962.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21195]
 gi|418283010|ref|ZP_12895767.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21202]
 gi|418582025|ref|ZP_13146103.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1605]
 gi|418897728|ref|ZP_13451798.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC341D]
 gi|418900598|ref|ZP_13454655.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1214]
 gi|4009496|gb|AAC95463.1| YlmH [Staphylococcus aureus]
 gi|49241483|emb|CAG40169.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257274746|gb|EEV06233.1| YlmH [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278666|gb|EEV09285.1| YlmH protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281392|gb|EEV11529.1| YlmH protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257284423|gb|EEV14543.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313984|gb|EFB44376.1| hypothetical protein SARG_01553 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316699|gb|EFB47073.1| hypothetical protein SASG_00195 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322035|gb|EFB52359.1| YlmH protein [Staphylococcus aureus subsp. aureus M899]
 gi|282330799|gb|EFB60313.1| hypothetical protein SDAG_01131 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595361|gb|EFC00325.1| YlmH protein [Staphylococcus aureus subsp. aureus C160]
 gi|290920619|gb|EFD97682.1| YlmH protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096005|gb|EFE26266.1| hypothetical protein SCAG_01530 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467408|gb|EFF09925.1| hypothetical protein SAZG_01859 [Staphylococcus aureus subsp.
           aureus M809]
 gi|297576251|gb|EFH94967.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438432|gb|ADQ77503.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|341853980|gb|EGS94856.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21195]
 gi|365168607|gb|EHM59945.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21202]
 gi|377703066|gb|EHT27382.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1214]
 gi|377710435|gb|EHT34673.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1605]
 gi|377760763|gb|EHT84639.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC341D]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|417797864|ref|ZP_12445050.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21310]
 gi|418655142|ref|ZP_13217019.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-105]
 gi|334276986|gb|EGL95225.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21310]
 gi|375037991|gb|EHS30991.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-105]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--QRIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|295427677|ref|ZP_06820309.1| hypothetical protein SIAG_00197 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|418565188|ref|ZP_13129602.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21264]
 gi|418595566|ref|ZP_13159173.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21342]
 gi|418601287|ref|ZP_13164725.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21345]
 gi|418891823|ref|ZP_13445938.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1176]
 gi|418908902|ref|ZP_13462905.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG149]
 gi|418916986|ref|ZP_13470945.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1267]
 gi|418922773|ref|ZP_13476690.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1233]
 gi|418982104|ref|ZP_13529812.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1242]
 gi|418985771|ref|ZP_13533457.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1500]
 gi|295128035|gb|EFG57669.1| hypothetical protein SIAG_00197 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|371974669|gb|EHO91988.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21264]
 gi|374399114|gb|EHQ70262.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21345]
 gi|374401146|gb|EHQ72233.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21342]
 gi|377704385|gb|EHT28694.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1242]
 gi|377705589|gb|EHT29893.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1500]
 gi|377731155|gb|EHT55212.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1176]
 gi|377736096|gb|EHT60126.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1233]
 gi|377750160|gb|EHT74098.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1267]
 gi|377753940|gb|EHT77850.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG149]
          Length = 259

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|253731810|ref|ZP_04865975.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724460|gb|EES93189.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRTHITDLGGKTKKDK 258


>gi|414160466|ref|ZP_11416734.1| hypothetical protein HMPREF9310_01108 [Staphylococcus simulans
           ACS-120-V-Sch1]
 gi|410878364|gb|EKS26249.1| hypothetical protein HMPREF9310_01108 [Staphylococcus simulans
           ACS-120-V-Sch1]
          Length = 241

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSITG 159
           FL P       + +    D++    GG P +ER R  +   + E    D ++V    +  
Sbjct: 20  FLDPRAQYILEVIVNSFDDLQVSFNGGSPSSERKRAVIAPDYFEPTEEDFELVL-FDLEY 78

Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 219
              F    H + LG+++   I R+++GDII+ G+K  QF++   +  Y++  L+++  V 
Sbjct: 79  PEKFASIDHRNVLGTLMSFSIERDQLGDIIV-GDK-IQFILTKNIKSYIMLELKRIKGVP 136

Query: 220 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 279
           V    +PL  +          +   +++R+D +     + SRS     I    ++VN T 
Sbjct: 137 VKLHEVPLEDMIQSKEDWTLHQATVSAMRLDVVLKEMIRKSRSIAKQYIEKKRIKVNHTI 196

Query: 280 VTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 316
           + +    L  GD++S+ G GR ++ EI + T+K K  +
Sbjct: 197 IERPDFQLEPGDLLSIQGHGRARVTEIGHKTKKDKLRI 234


>gi|418559205|ref|ZP_13123751.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21252]
 gi|371975496|gb|EHO92790.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21252]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|294784591|ref|ZP_06749880.1| RNA binding protein [Fusobacterium sp. 3_1_27]
 gi|294487807|gb|EFG35166.1| RNA binding protein [Fusobacterium sp. 3_1_27]
          Length = 241

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 125/251 (49%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +  +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  T D     V    I     F    H  +LG+ILG GI RE +GD+I++  + 
Sbjct: 58  AV-YPEYFTEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNNEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  +    I     E + P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPIEIIEIT----ERDVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISVGDTIIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|251810621|ref|ZP_04825094.1| ribosomal protein S4e [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876378|ref|ZP_06285245.1| S4 domain protein [Staphylococcus epidermidis SK135]
 gi|417645978|ref|ZP_12295863.1| S4 domain protein [Staphylococcus epidermidis VCU144]
 gi|417913413|ref|ZP_12557080.1| S4 domain protein [Staphylococcus epidermidis VCU109]
 gi|418603427|ref|ZP_13166812.1| S4 domain protein [Staphylococcus epidermidis VCU041]
 gi|418609817|ref|ZP_13172951.1| S4 domain protein [Staphylococcus epidermidis VCU065]
 gi|420202094|ref|ZP_14707689.1| YlmH protein [Staphylococcus epidermidis NIHLM018]
 gi|420206488|ref|ZP_14711998.1| YlmH protein [Staphylococcus epidermidis NIHLM008]
 gi|421607307|ref|ZP_16048553.1| hypothetical protein B440_03118 [Staphylococcus epidermidis
           AU12-03]
 gi|251805781|gb|EES58438.1| ribosomal protein S4e [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295403|gb|EFA87930.1| S4 domain protein [Staphylococcus epidermidis SK135]
 gi|329729990|gb|EGG66381.1| S4 domain protein [Staphylococcus epidermidis VCU144]
 gi|341655695|gb|EGS79419.1| S4 domain protein [Staphylococcus epidermidis VCU109]
 gi|374406153|gb|EHQ77056.1| S4 domain protein [Staphylococcus epidermidis VCU065]
 gi|374407596|gb|EHQ78449.1| S4 domain protein [Staphylococcus epidermidis VCU041]
 gi|394270067|gb|EJE14590.1| YlmH protein [Staphylococcus epidermidis NIHLM018]
 gi|394278327|gb|EJE22644.1| YlmH protein [Staphylococcus epidermidis NIHLM008]
 gi|406657099|gb|EKC83492.1| hypothetical protein B440_03118 [Staphylococcus epidermidis
           AU12-03]
          Length = 220

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|414158875|ref|ZP_11415167.1| hypothetical protein HMPREF9188_01441 [Streptococcus sp. F0441]
 gi|410868858|gb|EKS16822.1| hypothetical protein HMPREF9188_01441 [Streptococcus sp. F0441]
          Length = 263

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +  L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMTLLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K  + +
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257


>gi|421487487|ref|ZP_15934890.1| S4 domain protein [Streptococcus oralis SK304]
 gi|400370914|gb|EJP23894.1| S4 domain protein [Streptococcus oralis SK304]
          Length = 263

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 3/158 (1%)

Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
           F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +        + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIRKIGRLPVS 159

Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 281
               P           +  + + +S R+DAL S+  KLSR++   LI    V+VN+  V 
Sbjct: 160 LEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSVQVNYHLVE 219

Query: 282 KNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
           K+   +  GD++SV   GR+K+ + N  T+K K  + +
Sbjct: 220 KSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257


>gi|418993807|ref|ZP_13541444.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG290]
 gi|377746966|gb|EHT70936.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG290]
          Length = 259

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|418561881|ref|ZP_13126356.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21262]
 gi|371975157|gb|EHO92457.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21262]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|306824771|ref|ZP_07458115.1| S4 domain-containing protein YlmH [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|417793712|ref|ZP_12440983.1| S4 domain protein [Streptococcus oralis SK255]
 gi|304432982|gb|EFM35954.1| S4 domain-containing protein YlmH [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|334272140|gb|EGL90510.1| S4 domain protein [Streptococcus oralis SK255]
          Length = 263

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +  L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMTLLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + K+G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K  + +
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257


>gi|282916441|ref|ZP_06324203.1| hypothetical protein SATG_01276 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770253|ref|ZP_06343145.1| YlmH [Staphylococcus aureus subsp. aureus H19]
 gi|384547433|ref|YP_005736686.1| hypothetical protein SAOV_1192 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|384549947|ref|YP_005739199.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|387780301|ref|YP_005755099.1| hypothetical protein SARLGA251_11020 [Staphylococcus aureus subsp.
           aureus LGA251]
 gi|417904139|ref|ZP_12547969.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21269]
 gi|282319881|gb|EFB50229.1| hypothetical protein SATG_01276 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460400|gb|EFC07490.1| YlmH [Staphylococcus aureus subsp. aureus H19]
 gi|298694482|gb|ADI97704.1| hypothetical protein SAOV_1192 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302332796|gb|ADL22989.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|341847962|gb|EGS89131.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21269]
 gi|344177403|emb|CCC87870.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           LGA251]
          Length = 268

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|402312199|ref|ZP_10831129.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
           ICM7]
 gi|400370860|gb|EJP23842.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
           ICM7]
          Length = 249

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 19/242 (7%)

Query: 85  LEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSV 139
           L++AR A  +  V++S FL      + E++   + L +++ V  GGY +AER   C    
Sbjct: 13  LDLARNAYFKNIVMYSMFLNLNEQTIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCD 70

Query: 140 GHPEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQ 197
             PE      D++  + I+  N  F    +H DFLG+++  GI R  +GDI +  +  A 
Sbjct: 71  NIPEF-----DMLEYIKISPVNKKFADDLTHRDFLGALMNLGIERHMVGDICIV-DNTAH 124

Query: 198 FLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAG 256
            +    +++ +I+ L  V    V   R    A E +      +K I   S R+D++  + 
Sbjct: 125 IITFKSMSETIISELTTVKRTKVVLERES--ADELKAVNRVEYKKINIPSERLDSIIGSI 182

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 315
           + +SRSK+   I  G V +N      + + +++GDI++V G GR K   I++ ++KG+  
Sbjct: 183 YNISRSKVNLYIDAGKVFINSRQCFSHSSKIKSGDIITVRGLGRAKFLGISALSKKGRLF 242

Query: 316 VE 317
            E
Sbjct: 243 AE 244


>gi|331265956|ref|YP_004325586.1| hypothetical protein SOR_0583 [Streptococcus oralis Uo5]
 gi|326682628|emb|CBZ00245.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 263

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 210
           +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V          
Sbjct: 90  MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRAFIPLFQD 148

Query: 211 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 270
            + K+G + VS    P           +  + + +S R+DAL S+  KLSR++   LI  
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSVLKLSRNQTSQLIEK 208

Query: 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
             V+VN+  V K+   +  GD++SV   GR+KI + N  T+K K
Sbjct: 209 KSVQVNYHLVEKSDYQVAVGDLISVRKIGRLKIVKDNGQTKKDK 252


>gi|148267683|ref|YP_001246626.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393741|ref|YP_001316416.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|253314955|ref|ZP_04838168.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255005978|ref|ZP_05144579.2| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795753|ref|ZP_05644732.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9781]
 gi|258415977|ref|ZP_05682247.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9763]
 gi|258419724|ref|ZP_05682691.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258438766|ref|ZP_05689919.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|258444528|ref|ZP_05692857.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|258447639|ref|ZP_05695783.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A6300]
 gi|258454860|ref|ZP_05702824.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|269202806|ref|YP_003282075.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892677|ref|ZP_06300912.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8117]
 gi|282929236|ref|ZP_06336811.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A10102]
 gi|295407129|ref|ZP_06816930.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8819]
 gi|296276133|ref|ZP_06858640.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297245985|ref|ZP_06929844.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8796]
 gi|384864418|ref|YP_005749777.1| S4 domain-containing protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|415691038|ref|ZP_11453277.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|417651228|ref|ZP_12300991.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21172]
 gi|417893418|ref|ZP_12537447.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21201]
 gi|418424329|ref|ZP_12997452.1| hypothetical protein MQA_02001 [Staphylococcus aureus subsp. aureus
           VRS1]
 gi|418427326|ref|ZP_13000338.1| hypothetical protein MQC_00032 [Staphylococcus aureus subsp. aureus
           VRS2]
 gi|418430167|ref|ZP_13003083.1| hypothetical protein MQE_00031 [Staphylococcus aureus subsp. aureus
           VRS3a]
 gi|418433128|ref|ZP_13005908.1| hypothetical protein MQG_01683 [Staphylococcus aureus subsp. aureus
           VRS4]
 gi|418436803|ref|ZP_13008605.1| hypothetical protein MQI_00624 [Staphylococcus aureus subsp. aureus
           VRS5]
 gi|418439674|ref|ZP_13011382.1| hypothetical protein MQK_01343 [Staphylococcus aureus subsp. aureus
           VRS6]
 gi|418442727|ref|ZP_13014329.1| hypothetical protein MQM_00279 [Staphylococcus aureus subsp. aureus
           VRS7]
 gi|418445786|ref|ZP_13017262.1| hypothetical protein MQO_00032 [Staphylococcus aureus subsp. aureus
           VRS8]
 gi|418448730|ref|ZP_13020122.1| hypothetical protein MQQ_00804 [Staphylococcus aureus subsp. aureus
           VRS9]
 gi|418451554|ref|ZP_13022888.1| hypothetical protein MQS_00032 [Staphylococcus aureus subsp. aureus
           VRS10]
 gi|418454610|ref|ZP_13025872.1| hypothetical protein MQU_00497 [Staphylococcus aureus subsp. aureus
           VRS11a]
 gi|418457486|ref|ZP_13028689.1| hypothetical protein MQW_00324 [Staphylococcus aureus subsp. aureus
           VRS11b]
 gi|418568958|ref|ZP_13133298.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21272]
 gi|418654785|ref|ZP_13216681.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-99]
 gi|418663139|ref|ZP_13224664.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-122]
 gi|418878041|ref|ZP_13432276.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1165]
 gi|418880868|ref|ZP_13435087.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1213]
 gi|418883797|ref|ZP_13437992.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1769]
 gi|418914288|ref|ZP_13468260.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC340D]
 gi|424768621|ref|ZP_18195885.1| S4 domain protein [Staphylococcus aureus subsp. aureus CM05]
 gi|443637330|ref|ZP_21121412.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21236]
 gi|147740752|gb|ABQ49050.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946193|gb|ABR52129.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257789725|gb|EEV28065.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9781]
 gi|257839313|gb|EEV63787.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9763]
 gi|257844309|gb|EEV68691.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257848025|gb|EEV72018.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A9299]
 gi|257850021|gb|EEV73974.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8115]
 gi|257853830|gb|EEV76789.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A6300]
 gi|257863243|gb|EEV86007.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A5937]
 gi|262075096|gb|ACY11069.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589195|gb|EFB94292.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A10102]
 gi|282764674|gb|EFC04799.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8117]
 gi|294967982|gb|EFG44010.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8819]
 gi|297177149|gb|EFH36403.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           A8796]
 gi|312829585|emb|CBX34427.1| S4 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130982|gb|EFT86966.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727412|gb|EGG63868.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21172]
 gi|341854803|gb|EGS95665.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21201]
 gi|371978143|gb|EHO95393.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21272]
 gi|375014610|gb|EHS08291.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-99]
 gi|375034772|gb|EHS27922.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-122]
 gi|377694163|gb|EHT18528.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1165]
 gi|377714884|gb|EHT39082.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1769]
 gi|377731761|gb|EHT55814.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1213]
 gi|377757790|gb|EHT81678.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC340D]
 gi|387718562|gb|EIK06520.1| hypothetical protein MQE_00031 [Staphylococcus aureus subsp. aureus
           VRS3a]
 gi|387718913|gb|EIK06869.1| hypothetical protein MQC_00032 [Staphylococcus aureus subsp. aureus
           VRS2]
 gi|387720632|gb|EIK08539.1| hypothetical protein MQA_02001 [Staphylococcus aureus subsp. aureus
           VRS1]
 gi|387725794|gb|EIK13392.1| hypothetical protein MQG_01683 [Staphylococcus aureus subsp. aureus
           VRS4]
 gi|387727907|gb|EIK15407.1| hypothetical protein MQI_00624 [Staphylococcus aureus subsp. aureus
           VRS5]
 gi|387730777|gb|EIK18135.1| hypothetical protein MQK_01343 [Staphylococcus aureus subsp. aureus
           VRS6]
 gi|387735714|gb|EIK22824.1| hypothetical protein MQO_00032 [Staphylococcus aureus subsp. aureus
           VRS8]
 gi|387737392|gb|EIK24458.1| hypothetical protein MQM_00279 [Staphylococcus aureus subsp. aureus
           VRS7]
 gi|387737946|gb|EIK25000.1| hypothetical protein MQQ_00804 [Staphylococcus aureus subsp. aureus
           VRS9]
 gi|387744435|gb|EIK31199.1| hypothetical protein MQS_00032 [Staphylococcus aureus subsp. aureus
           VRS10]
 gi|387745725|gb|EIK32475.1| hypothetical protein MQU_00497 [Staphylococcus aureus subsp. aureus
           VRS11a]
 gi|387747218|gb|EIK33927.1| hypothetical protein MQW_00324 [Staphylococcus aureus subsp. aureus
           VRS11b]
 gi|402348512|gb|EJU83498.1| S4 domain protein [Staphylococcus aureus subsp. aureus CM05]
 gi|408423395|emb|CCJ10806.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408425385|emb|CCJ12772.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408427373|emb|CCJ14736.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408429360|emb|CCJ26525.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408431348|emb|CCJ18663.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408433342|emb|CCJ20627.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408435333|emb|CCJ22593.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|408437318|emb|CCJ24561.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
 gi|443405911|gb|ELS64501.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21236]
          Length = 268

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|448744994|ref|ZP_21726870.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           KT/Y21]
 gi|445561703|gb|ELY17894.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           KT/Y21]
          Length = 268

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|386830728|ref|YP_006237382.1| hypothetical protein SAEMRSA15_10240 [Staphylococcus aureus subsp.
           aureus HO 5096 0412]
 gi|385196120|emb|CCG15739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           HO 5096 0412]
          Length = 268

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|289551026|ref|YP_003471930.1| S4 RNA-binding protein [Staphylococcus lugdunensis HKU09-01]
 gi|289180558|gb|ADC87803.1| S4-like RNA binding domain-containing hypothetical protein
           [Staphylococcus lugdunensis HKU09-01]
          Length = 264

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 4/195 (2%)

Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
           A   G Y + +R  ++  + E    D ++   L I     F    H   LG+++  GI R
Sbjct: 66  AFNDGLYAERQRAIIAPSYYEPRVEDFEL-CCLEIDYPEKFVTLQHQHVLGTLMSLGIER 124

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           E++GDI     +  QF++  +L  Y++  L ++   +V    IPL  +       K   T
Sbjct: 125 EQVGDI--HVAQRIQFVLTRQLESYIMMELTRIKGATVKLNSIPLQDMIQSEENWKIQHT 182

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +++R+D +       SRS    LI    V+VN T V  +   L   D++S+ G GR +
Sbjct: 183 TVSAMRLDVVLKDMIHKSRSIAKQLIEKKRVKVNHTIVEASDFQLEPNDLLSIQGYGRAQ 242

Query: 303 IGEI-NSTRKGKFAV 316
           + EI   T+K K+ +
Sbjct: 243 LLEIGGRTKKDKYYI 257


>gi|421144308|ref|ZP_15604223.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
           51190]
 gi|395489258|gb|EJG10098.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
           51190]
          Length = 241

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 125/251 (49%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +  +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  T D     V    I     F    H  +LG+IL  GI RE +GD+I++  + 
Sbjct: 58  AV-YPEYFTEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILSLGIKREILGDLIVKNNEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  +  T I     E + P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPIEITEIT----ERDVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISVGDTIIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|21282803|ref|NP_645891.1| hypothetical protein MW1074 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486031|ref|YP_043252.1| hypothetical protein SAS1125 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87159985|ref|YP_493782.1| hypothetical protein SAUSA300_1085 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194897|ref|YP_499697.1| hypothetical protein SAOUHSC_01156 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|161509365|ref|YP_001575024.1| hypothetical protein USA300HOU_1128 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140637|ref|ZP_03565130.1| hypothetical protein SauraJ_03241 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733570|ref|ZP_04867735.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451889|ref|ZP_05699910.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282919972|ref|ZP_06327701.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|284024115|ref|ZP_06378513.1| hypothetical protein Saura13_05969 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848184|ref|ZP_06788931.1| hypothetical protein SKAG_00243 [Staphylococcus aureus A9754]
 gi|297208167|ref|ZP_06924597.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912245|ref|ZP_07129688.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|379014382|ref|YP_005290618.1| hypothetical protein SAVC_05120 [Staphylococcus aureus subsp.
           aureus VC40]
 gi|384861785|ref|YP_005744505.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|384869724|ref|YP_005752438.1| MW1074 protein [Staphylococcus aureus subsp. aureus T0131]
 gi|415688517|ref|ZP_11452207.1| hypothetical protein CGSSa01_04105 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|417650017|ref|ZP_12299797.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21189]
 gi|417655639|ref|ZP_12305349.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21193]
 gi|417901463|ref|ZP_12545339.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21266]
 gi|418280910|ref|ZP_12893732.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21178]
 gi|418286371|ref|ZP_12899017.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21209]
 gi|418316104|ref|ZP_12927548.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21340]
 gi|418321928|ref|ZP_12933267.1| S4 domain protein [Staphylococcus aureus subsp. aureus VCU006]
 gi|418579021|ref|ZP_13143116.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1114]
 gi|418657802|ref|ZP_13219557.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-111]
 gi|418903399|ref|ZP_13457440.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1770]
 gi|418925423|ref|ZP_13479325.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG2018]
 gi|422743419|ref|ZP_16797403.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|422745579|ref|ZP_16799518.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|424785020|ref|ZP_18211823.1| hypothetical protein CN79_1133 [Staphylococcus aureus CN79]
 gi|440708384|ref|ZP_20889050.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21282]
 gi|440734636|ref|ZP_20914248.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus DSM 20231]
 gi|448740325|ref|ZP_21722305.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           KT/314250]
 gi|21204241|dbj|BAB94939.1| MW1074 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244474|emb|CAG42902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87125959|gb|ABD20473.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202455|gb|ABD30265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|160368174|gb|ABX29145.1| hypothetical protein USA300HOU_1128 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253728440|gb|EES97169.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus TCH130]
 gi|257860497|gb|EEV83324.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|282594688|gb|EFB99672.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294824984|gb|EFG41406.1| hypothetical protein SKAG_00243 [Staphylococcus aureus A9754]
 gi|296886906|gb|EFH25809.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886491|gb|EFK81693.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751014|gb|ADL65191.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|315196921|gb|EFU27264.1| hypothetical protein CGSSa01_04105 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140994|gb|EFW32841.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143050|gb|EFW34840.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313859|gb|AEB88272.1| MW1074 protein [Staphylococcus aureus subsp. aureus T0131]
 gi|329725026|gb|EGG61522.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21189]
 gi|329728857|gb|EGG65278.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21193]
 gi|341845302|gb|EGS86504.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21266]
 gi|365167011|gb|EHM58488.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21178]
 gi|365167079|gb|EHM58555.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21209]
 gi|365224543|gb|EHM65808.1| S4 domain protein [Staphylococcus aureus subsp. aureus VCU006]
 gi|365241775|gb|EHM82510.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21340]
 gi|374363079|gb|AEZ37184.1| hypothetical protein SAVC_05120 [Staphylococcus aureus subsp.
           aureus VC40]
 gi|375039966|gb|EHS32876.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-111]
 gi|377697048|gb|EHT21403.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1114]
 gi|377742414|gb|EHT66399.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1770]
 gi|377744492|gb|EHT68469.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG2018]
 gi|421956430|gb|EKU08759.1| hypothetical protein CN79_1133 [Staphylococcus aureus CN79]
 gi|436431664|gb|ELP29017.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
           aureus DSM 20231]
 gi|436504967|gb|ELP40928.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21282]
 gi|445548970|gb|ELY17216.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           KT/314250]
          Length = 268

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|417800967|ref|ZP_12448069.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21318]
 gi|418886451|ref|ZP_13440599.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1150]
 gi|418920269|ref|ZP_13474202.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC348]
 gi|418991053|ref|ZP_13538714.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1096]
 gi|334277461|gb|EGL95691.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21318]
 gi|377723175|gb|EHT47300.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1096]
 gi|377725404|gb|EHT49517.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1150]
 gi|377765628|gb|EHT89477.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC348]
          Length = 259

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|418643756|ref|ZP_13205914.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-55]
 gi|421150074|ref|ZP_15609730.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           subsp. aureus str. Newbould 305]
 gi|443640103|ref|ZP_21124100.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21196]
 gi|375028054|gb|EHS21410.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-55]
 gi|394329464|gb|EJE55566.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
           subsp. aureus str. Newbould 305]
 gi|443405850|gb|ELS64441.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21196]
          Length = 259

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|418144609|ref|ZP_12781404.1| hypothetical protein SPAR31_1807 [Streptococcus pneumoniae GA13494]
 gi|353807075|gb|EHD87347.1| hypothetical protein SPAR31_1807 [Streptococcus pneumoniae GA13494]
          Length = 259

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 15/254 (5%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQ 126
           KG+    +IE+ +  L+       + E  ++ FLTP   P  ++ +  L K   +  ++ 
Sbjct: 3   KGIYQHFSIED-RPFLDKRMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACISS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I----GEINSTRKG 312
           +    G+    RK 
Sbjct: 239 LLQDKGQTKKRRKN 252


>gi|425736765|ref|ZP_18855041.1| hypothetical protein C273_00160 [Staphylococcus massiliensis S46]
 gi|425483237|gb|EKU50389.1| hypothetical protein C273_00160 [Staphylococcus massiliensis S46]
          Length = 256

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 5/199 (2%)

Query: 120 DVKAVAQGGYP-QAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
           D+K   +GG   + +R  ++  + E    D ++ + + I     F    H   LG+++  
Sbjct: 54  DLKVYFEGGRDSERKRALITPDYYEPQIDDFEL-SLIDIDYPKKFVTIQHQHILGTLMSL 112

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           GI RE+IGDI++ G++  QF++  +L  +++  L ++ N S+    IPL  +       K
Sbjct: 113 GIEREQIGDILV-GDR-LQFVLTKQLESFIMFELTRIRNASIKLNSIPLEDMIQSKENWK 170

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
                 +++R+D +     + SR     LI    V+VN T +      L  GD++S+ G 
Sbjct: 171 VQTATVSAMRLDVVLKDMIRKSRGIAKALIEKKRVKVNHTIIEDVAFKLDEGDLLSIQGY 230

Query: 299 GRIKIGEI-NSTRKGKFAV 316
           GR K+ EI + T+K K  +
Sbjct: 231 GRAKVTEIGHRTKKDKLHI 249


>gi|118443110|ref|YP_878020.1| YlmH protein [Clostridium novyi NT]
 gi|118133566|gb|ABK60610.1| YlmH protein, putative [Clostridium novyi NT]
          Length = 261

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 106/207 (51%), Gaps = 16/207 (7%)

Query: 125 AQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
           A G + +++R  +S+      E + + P  +  + I     F+   H DFLG+++  G+ 
Sbjct: 62  AFGIFKESDRRVISILGAYDHEEIYNYP--IELIRIDNKSTFKKLKHSDFLGALMAQGLK 119

Query: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241
           REK GD+I++G+      +  +++ ++I ++ K+G    S   I      Y+     +F+
Sbjct: 120 REKFGDLIVKGD-SCYVPICSDISQFIIDNVTKIGKNPCSIKIIN----HYDGNEVPTFQ 174

Query: 242 TIE-----ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296
             E     +S+R+D++ +A   LSR    +LI  G V +N+  +TK    ++   I+++ 
Sbjct: 175 FQEKSVVISSMRLDSIVAALSGLSRGNSEDLIKKGLVLINYDKITKRNAIVKPNSIITIR 234

Query: 297 GKGRIKIGE-INSTRKGKFAVELIQYL 322
           G G+ +I E I  T KG+  + + +Y+
Sbjct: 235 GYGKFRIDEYIGKTLKGRERIIIKKYI 261


>gi|418411611|ref|ZP_12984878.1| hypothetical protein HMPREF9281_00482 [Staphylococcus epidermidis
           BVS058A4]
 gi|410892337|gb|EKS40131.1| hypothetical protein HMPREF9281_00482 [Staphylococcus epidermidis
           BVS058A4]
          Length = 220

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPYAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|418126312|ref|ZP_12763218.1| hypothetical protein SPAR86_1683 [Streptococcus pneumoniae GA44511]
 gi|353796252|gb|EHD76597.1| hypothetical protein SPAR86_1683 [Streptococcus pneumoniae GA44511]
          Length = 261

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQ 126
           KG+    +IE+ +  L+       + E  ++ FLTP   P  ++ +  L K   +   + 
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEECPFTEKIDKIEQCRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 TVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|420198977|ref|ZP_14704661.1| YlmH protein [Staphylococcus epidermidis NIHLM031]
 gi|394272663|gb|EJE17113.1| YlmH protein [Staphylococcus epidermidis NIHLM031]
          Length = 220

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   +V    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGATVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|57651761|ref|YP_186067.1| YlmH protein [Staphylococcus aureus subsp. aureus COL]
 gi|385781418|ref|YP_005757589.1| S4 domain-containing protein [Staphylococcus aureus subsp. aureus
           11819-97]
 gi|417796572|ref|ZP_12443780.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21305]
 gi|417898905|ref|ZP_12542818.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21259]
 gi|418570819|ref|ZP_13135080.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21283]
 gi|418574683|ref|ZP_13138850.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21333]
 gi|418642798|ref|ZP_13204984.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-24]
 gi|418647698|ref|ZP_13209761.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-88]
 gi|418649586|ref|ZP_13211614.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-91]
 gi|418873533|ref|ZP_13427828.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-125]
 gi|418875125|ref|ZP_13429385.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC93]
 gi|418906125|ref|ZP_13460152.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC345D]
 gi|418911796|ref|ZP_13465779.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG547]
 gi|418928447|ref|ZP_13482333.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1612]
 gi|418934090|ref|ZP_13487914.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC128]
 gi|418988012|ref|ZP_13535685.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1835]
 gi|419775309|ref|ZP_14301251.1| S4 domain protein [Staphylococcus aureus subsp. aureus CO-23]
 gi|57285947|gb|AAW38041.1| YlmH protein [Staphylococcus aureus subsp. aureus COL]
 gi|334268562|gb|EGL86996.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21305]
 gi|341847188|gb|EGS88373.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21259]
 gi|364522407|gb|AEW65157.1| S4 domain protein [Staphylococcus aureus subsp. aureus 11819-97]
 gi|371978814|gb|EHO96055.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21333]
 gi|371982999|gb|EHP00147.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21283]
 gi|375015911|gb|EHS09555.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-24]
 gi|375029408|gb|EHS22736.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-88]
 gi|375029959|gb|EHS23284.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-91]
 gi|375366070|gb|EHS70082.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-125]
 gi|377719800|gb|EHT43970.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1835]
 gi|377725174|gb|EHT49289.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG547]
 gi|377738359|gb|EHT62368.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1612]
 gi|377765425|gb|EHT89275.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC345D]
 gi|377770185|gb|EHT93947.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC93]
 gi|377771870|gb|EHT95624.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC128]
 gi|383970993|gb|EID87083.1| S4 domain protein [Staphylococcus aureus subsp. aureus CO-23]
          Length = 259

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|322392783|ref|ZP_08066241.1| S4 domain-containing protein YlmH [Streptococcus peroris ATCC
           700780]
 gi|321144361|gb|EFX39764.1| S4 domain-containing protein YlmH [Streptococcus peroris ATCC
           700780]
          Length = 261

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 103 LTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
           LTP +    +  LE L    ++K  +   Y  +E  R+ +       S  D  +A L I 
Sbjct: 35  LTPFINPHQVYILETLGNNREIKTFSSTSYVPSEYARVLLAPDYFAPSLEDFEMALLEIE 94

Query: 159 GNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 217
            +  FQ  +H   LG++L   GI R+  GDI++  E+ AQ +V           ++K+  
Sbjct: 95  YSSKFQQLTHSKILGTVLNRLGIDRKLFGDILV-TEQKAQIIVDQRFTTLFQDGIQKISK 153

Query: 218 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 277
           + VS        +       +  + + +SLR+D+  S+  KLSRS+  NL+    V+VN+
Sbjct: 154 LPVSLVERSFSDIIKSKDGYQEREVLVSSLRLDSFLSSILKLSRSQTSNLVEKKLVQVNY 213

Query: 278 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 322
             V K    ++ GD++SV   GRI + + N  T+K K  V + Q L
Sbjct: 214 HIVEKLDYQVKVGDLISVRRFGRIILLKENGQTKKDKKKVTIQQLL 259


>gi|343524629|ref|ZP_08761587.1| S4 domain protein [Streptococcus constellatus subsp. pharyngis
           SK1060 = CCUG 46377]
 gi|343398278|gb|EGV10811.1| S4 domain protein [Streptococcus constellatus subsp. pharyngis
           SK1060 = CCUG 46377]
          Length = 263

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 5/169 (2%)

Query: 155 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 213
           L I+    F   +H   +G++L   GI R+  GDI++   + AQ +V  +   + I  + 
Sbjct: 93  LEISYANKFHHLTHSQIMGTLLNQLGIERKVFGDILVASGR-AQIMVDRKFTQFFIDHIS 151

Query: 214 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 273
           ++   SV   ++    L      +K    + +S+R+D + +A F+LSRS    LI+   V
Sbjct: 152 RIAKTSVKLKQVDFSQLIAVQADSKLRDVLVSSMRLDKVLAASFRLSRSAATKLIATKQV 211

Query: 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAVELI 319
           RVN++ +      L   D++SV G GR+K+   N   K    K  VEL+
Sbjct: 212 RVNYSMLDNPSHHLLLNDLISVRGYGRVKVLRENGFSKNGKCKLTVELL 260


>gi|417941038|ref|ZP_12584325.1| S4 domain protein [Streptococcus oralis SK313]
 gi|343388331|gb|EGV00917.1| S4 domain protein [Streptococcus oralis SK313]
          Length = 252

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 85  LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGH 141
           LE  RR     E  +   LTP +       L  LA    +   + G +   E  R+ + +
Sbjct: 23  LEWIRRV----EDTYVPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-Y 77

Query: 142 PEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGA 196
           P+    +P+I    +A L I     F+  SHG  LG+I+   GI R+  GDI++  EK A
Sbjct: 78  PDYF--EPEISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRA 134

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           Q  V  +        + ++G + VS    P           +  + + +S R+DAL S+ 
Sbjct: 135 QIFVNRDFIPLFQDGIRRIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSA 194

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 311
            KLSR++   LI    V+VN+  V K+   +  GD++SV   GR+K+ + N   K
Sbjct: 195 LKLSRNQTSQLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTK 249


>gi|306829909|ref|ZP_07463096.1| S4 domain-containing protein YlmH [Streptococcus mitis ATCC 6249]
 gi|304427920|gb|EFM31013.1| S4 domain-containing protein YlmH [Streptococcus mitis ATCC 6249]
          Length = 263

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 163 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 221
           F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +        + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIIKIGRLPVS 159

Query: 222 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 281
               P           +  + + +S R+DAL S+  KLSR++   LI    V+VN+  V 
Sbjct: 160 LEERPFTDRIKSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSVQVNYHVVE 219

Query: 282 KNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
           K    +  GD++SV   GR+K+ + N  T+K K
Sbjct: 220 KTDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252


>gi|23098937|ref|NP_692403.1| hypothetical protein OB1482 [Oceanobacillus iheyensis HTE831]
 gi|22777165|dbj|BAC13438.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 258

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 8/222 (3%)

Query: 100 SDFLTPPVLKESMMAL--EKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
           +DFL P   +E + +L  E   +++    GG  ++ER R+ +    E +T D   +  L 
Sbjct: 34  TDFLDPRE-QEIVTSLIGEHNEELQVRGFGGSNKSERSRMILAPKYEEITEDMFQIQLLE 92

Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 216
                 F    H D +G+ L  GI R+K+GDII++  K  Q +   E++ ++  +L  + 
Sbjct: 93  ANFQPKFVMIEHPDVMGAFLSQGIKRKKLGDIIIEDGK-IQIIAASEISPFVQMNLTSIR 151

Query: 217 NVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
             SV   +  L L ++      +  KT+ +SLR+D +    + LSR +    I  G V+V
Sbjct: 152 KSSVHFEQKDLQLLIKKNETWIERDKTV-SSLRLDTVIKEIYPLSRKEATVFIQKGLVKV 210

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 316
           N+  V  N   L+  D++S+ G GR K+  I   ++K K  +
Sbjct: 211 NYKLVDDNKFQLQEKDMISIRGHGRSKLTSIRGKSKKDKVKI 252


>gi|149001946|ref|ZP_01826900.1| YlmH protein [Streptococcus pneumoniae SP14-BS69]
 gi|419458251|ref|ZP_13998193.1| hypothetical protein SPAR1_1705 [Streptococcus pneumoniae GA02254]
 gi|147759755|gb|EDK66745.1| YlmH protein [Streptococcus pneumoniae SP14-BS69]
 gi|379529915|gb|EHY95156.1| hypothetical protein SPAR1_1705 [Streptococcus pneumoniae GA02254]
          Length = 261

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 117/241 (48%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQ 126
           KG+    +IE+ +  L+       + E  ++ FLTP   P  ++ +  L K   +  ++ 
Sbjct: 3   KGIYQHFSIED-RPFLDKRMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACISS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|405760467|ref|YP_006701063.1| hypothetical protein SPNA45_00579 [Streptococcus pneumoniae SPNA45]
 gi|404277356|emb|CCM07867.1| conserved hypothetical protein [Streptococcus pneumoniae SPNA45]
          Length = 261

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYALFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIARE 183
           G +  +E  R  L + + +   SD +I     +  N  F+  +H   LG+++   GI R+
Sbjct: 62  GEFVSSEYVRVLLYLDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIERK 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
             GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +     
Sbjct: 121 LFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDLS 179

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            +S R+DAL S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR+++
Sbjct: 180 VSSFRLDALLSNVLKLSRNQANQLIERKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239


>gi|401684481|ref|ZP_10816360.1| S4 domain protein [Streptococcus sp. BS35b]
 gi|418974565|ref|ZP_13522475.1| S4 domain protein [Streptococcus oralis SK1074]
 gi|383348992|gb|EID26944.1| S4 domain protein [Streptococcus oralis SK1074]
 gi|400185725|gb|EJO19951.1| S4 domain protein [Streptococcus sp. BS35b]
          Length = 263

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)

Query: 94  RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 150
           R E  ++  LTP +       L  LA    +   + G +   E  R+ + +P+    +P+
Sbjct: 28  RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84

Query: 151 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 205
           I    +  L I     F+  SHG  LG+I+   GI R+  GDI++  EK AQ  V  +  
Sbjct: 85  ISDFEMTLLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143

Query: 206 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 265
                 + ++G + VS    P           +  + + +S R+DAL S+  KLSR++  
Sbjct: 144 PLFQDGIRRIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTS 203

Query: 266 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 318
            LI    V+VN+  V K+   +  GD++SV   GR+K+ + N  T+K K  + +
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257


>gi|417656664|ref|ZP_12306347.1| S4 domain protein [Staphylococcus epidermidis VCU028]
 gi|418664785|ref|ZP_13226251.1| S4 domain protein [Staphylococcus epidermidis VCU081]
 gi|419772576|ref|ZP_14298607.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-K]
 gi|329736325|gb|EGG72597.1| S4 domain protein [Staphylococcus epidermidis VCU028]
 gi|374410231|gb|EHQ80992.1| S4 domain protein [Staphylococcus epidermidis VCU081]
 gi|383359203|gb|EID36633.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-K]
          Length = 220

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I  L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIIFELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|421220747|ref|ZP_15677586.1| S4 domain protein [Streptococcus pneumoniae 2070425]
 gi|421223001|ref|ZP_15679783.1| S4 domain protein [Streptococcus pneumoniae 2070531]
 gi|395586657|gb|EJG47024.1| S4 domain protein [Streptococcus pneumoniae 2070425]
 gi|395586981|gb|EJG47343.1| S4 domain protein [Streptococcus pneumoniae 2070531]
          Length = 261

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 16/261 (6%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I----GEINSTRKGKFAVELI 319
           +    G+    RK K  V+L+
Sbjct: 239 LLQDKGQTKKERK-KITVQLL 258


>gi|419429862|ref|ZP_13970026.1| hypothetical protein SPAR25_1554 [Streptococcus pneumoniae GA11856]
 gi|419527998|ref|ZP_14067541.1| S4 domain protein [Streptococcus pneumoniae GA17719]
 gi|379550040|gb|EHZ15142.1| hypothetical protein SPAR25_1554 [Streptococcus pneumoniae GA11856]
 gi|379566151|gb|EHZ31142.1| S4 domain protein [Streptococcus pneumoniae GA17719]
          Length = 252

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGIACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|302874637|ref|YP_003843270.1| RNA binding protein [Clostridium cellulovorans 743B]
 gi|307690751|ref|ZP_07633197.1| RNA binding protein [Clostridium cellulovorans 743B]
 gi|302577494|gb|ADL51506.1| RNA binding protein [Clostridium cellulovorans 743B]
          Length = 255

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP---ELADYL 208
           V  L I  +  FQ   H D+LGSI+  GI R K+GD+I+          VP   ++A Y+
Sbjct: 86  VKVLLIKTSNKFQRVEHKDYLGSIMSLGIKRSKLGDLIVID----NLCYVPCTEDIASYI 141

Query: 209 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI--EASLRVDALASAGFKLSRSKLVN 266
           I S+ K+ N      +I +L+     P  +  + +    SLRVD++ S    +SRSK ++
Sbjct: 142 IDSISKIKNTPC---KIEILSSYDNLPEYQYDELVITTTSLRVDSVVSGITGISRSKGLS 198

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 321
            +S+G + +N++ V      + TGD +++   G+  I E I  T+ G+  V+++++
Sbjct: 199 ALSSGGILLNYSAVYDKSKLVSTGDTLTLRTYGKFSIKEIIGETKSGRLKVKVLKF 254


>gi|242373477|ref|ZP_04819051.1| ribosomal protein S4e [Staphylococcus epidermidis M23864:W1]
 gi|242348840|gb|EES40442.1| ribosomal protein S4e [Staphylococcus epidermidis M23864:W1]
          Length = 259

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 7/241 (2%)

Query: 79  EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR-- 136
           E +  +++   +A S    + + FL P       + +    D+     GG P AER R  
Sbjct: 16  ELIDQLMDKCEQADSHYAPVLTAFLDPRGQYILEVIVGSYEDLNVTYNGG-PHAERKRAI 74

Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 196
           ++  + E    D +I + L I     F    H   LG+++  GI R+++GDI++  E   
Sbjct: 75  IAPSYYEPQEEDYEI-SLLQIDYPEKFVNIQHQHVLGTLMSLGIERDQLGDIMIGDE--I 131

Query: 197 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 256
           QF++   L  Y++  L ++   +V    IP+  +       K      ++LR+D +    
Sbjct: 132 QFILTKRLESYIMFELTRIKGATVKLNSIPIKDMIQSEENWKIQSATVSALRLDVVLKDM 191

Query: 257 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFA 315
            + SR+    LI    V+VN T V      L   D++S+ G GR +I EI   T+K K  
Sbjct: 192 IRKSRNIAKQLIEKKRVKVNHTIVDTPDFQLEKNDLLSIQGFGRAQITEIGGRTKKDKLH 251

Query: 316 V 316
           +
Sbjct: 252 I 252


>gi|57866705|ref|YP_188339.1| hypothetical protein SERP0756 [Staphylococcus epidermidis RP62A]
 gi|242242473|ref|ZP_04796918.1| ribosomal protein S4e [Staphylococcus epidermidis W23144]
 gi|416124405|ref|ZP_11595401.1| S4 domain protein [Staphylococcus epidermidis FRI909]
 gi|418329263|ref|ZP_12940342.1| S4 domain protein [Staphylococcus epidermidis 14.1.R1.SE]
 gi|418612922|ref|ZP_13175943.1| S4 domain protein [Staphylococcus epidermidis VCU117]
 gi|418613978|ref|ZP_13176968.1| S4 domain protein [Staphylococcus epidermidis VCU118]
 gi|418626822|ref|ZP_13189418.1| S4 domain protein [Staphylococcus epidermidis VCU126]
 gi|418631931|ref|ZP_13194375.1| S4 domain protein [Staphylococcus epidermidis VCU128]
 gi|418634097|ref|ZP_13196495.1| S4 domain protein [Staphylococcus epidermidis VCU129]
 gi|420175040|ref|ZP_14681485.1| YlmH protein [Staphylococcus epidermidis NIHLM061]
 gi|420189636|ref|ZP_14695604.1| YlmH protein [Staphylococcus epidermidis NIHLM037]
 gi|420192785|ref|ZP_14698642.1| YlmH protein [Staphylococcus epidermidis NIHLM023]
 gi|420204113|ref|ZP_14709673.1| YlmH protein [Staphylococcus epidermidis NIHLM015]
 gi|420234350|ref|ZP_14738914.1| S4 domain protein [Staphylococcus epidermidis NIH051475]
 gi|57637363|gb|AAW54151.1| ylmH protein [Staphylococcus epidermidis RP62A]
 gi|242234047|gb|EES36359.1| ribosomal protein S4e [Staphylococcus epidermidis W23144]
 gi|319401515|gb|EFV89725.1| S4 domain protein [Staphylococcus epidermidis FRI909]
 gi|365230925|gb|EHM72000.1| S4 domain protein [Staphylococcus epidermidis 14.1.R1.SE]
 gi|374817232|gb|EHR81417.1| S4 domain protein [Staphylococcus epidermidis VCU117]
 gi|374821847|gb|EHR85888.1| S4 domain protein [Staphylococcus epidermidis VCU118]
 gi|374831366|gb|EHR95108.1| S4 domain protein [Staphylococcus epidermidis VCU126]
 gi|374833600|gb|EHR97275.1| S4 domain protein [Staphylococcus epidermidis VCU128]
 gi|374838089|gb|EHS01646.1| S4 domain protein [Staphylococcus epidermidis VCU129]
 gi|394244326|gb|EJD89671.1| YlmH protein [Staphylococcus epidermidis NIHLM061]
 gi|394260601|gb|EJE05410.1| YlmH protein [Staphylococcus epidermidis NIHLM023]
 gi|394260971|gb|EJE05773.1| YlmH protein [Staphylococcus epidermidis NIHLM037]
 gi|394274127|gb|EJE18552.1| YlmH protein [Staphylococcus epidermidis NIHLM015]
 gi|394304312|gb|EJE47718.1| S4 domain protein [Staphylococcus epidermidis NIH051475]
          Length = 220

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   +V    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGATVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEIIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 I-NSTRKGKFAV 316
           I   T+K K  +
Sbjct: 202 IGGKTKKNKLHI 213


>gi|225861490|ref|YP_002742999.1| YlmH protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|387788710|ref|YP_006253778.1| YlmH protein [Streptococcus pneumoniae ST556]
 gi|417313140|ref|ZP_12099852.1| hypothetical protein SPAR5_1539 [Streptococcus pneumoniae GA04375]
 gi|418085654|ref|ZP_12722833.1| hypothetical protein SPAR90_1559 [Streptococcus pneumoniae GA47281]
 gi|418094453|ref|ZP_12731580.1| hypothetical protein SPAR110_1581 [Streptococcus pneumoniae
           GA49138]
 gi|418119110|ref|ZP_12756067.1| hypothetical protein SPAR54_1151 [Streptococcus pneumoniae GA18523]
 gi|418142176|ref|ZP_12778989.1| hypothetical protein SPAR30_1563 [Streptococcus pneumoniae GA13455]
 gi|418151167|ref|ZP_12787913.1| hypothetical protein SPAR37_1580 [Streptococcus pneumoniae GA14798]
 gi|418164957|ref|ZP_12801625.1| hypothetical protein SPAR45_1593 [Streptococcus pneumoniae GA17371]
 gi|418171799|ref|ZP_12808423.1| hypothetical protein SPAR58_1584 [Streptococcus pneumoniae GA19451]
 gi|418228169|ref|ZP_12854786.1| hypothetical protein SPAR135_1553 [Streptococcus pneumoniae
           3063-00]
 gi|419438700|ref|ZP_13978768.1| hypothetical protein SPAR6_1636 [Streptococcus pneumoniae GA13499]
 gi|419449449|ref|ZP_13989445.1| hypothetical protein SPAR132_1529 [Streptococcus pneumoniae
           4075-00]
 gi|419502314|ref|ZP_14041998.1| hypothetical protein SPAR102_1560 [Streptococcus pneumoniae
           GA47628]
 gi|419519373|ref|ZP_14058979.1| hypothetical protein SPAR156_1525 [Streptococcus pneumoniae
           GA08825]
 gi|225726507|gb|ACO22358.1| YlmH protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389848|gb|EGE88193.1| hypothetical protein SPAR5_1539 [Streptococcus pneumoniae GA04375]
 gi|353756363|gb|EHD36964.1| hypothetical protein SPAR90_1559 [Streptococcus pneumoniae GA47281]
 gi|353764949|gb|EHD45497.1| hypothetical protein SPAR110_1581 [Streptococcus pneumoniae
           GA49138]
 gi|353791062|gb|EHD71443.1| hypothetical protein SPAR54_1151 [Streptococcus pneumoniae GA18523]
 gi|353806427|gb|EHD86701.1| hypothetical protein SPAR30_1563 [Streptococcus pneumoniae GA13455]
 gi|353814377|gb|EHD94603.1| hypothetical protein SPAR37_1580 [Streptococcus pneumoniae GA14798]
 gi|353828789|gb|EHE08925.1| hypothetical protein SPAR45_1593 [Streptococcus pneumoniae GA17371]
 gi|353835536|gb|EHE15630.1| hypothetical protein SPAR58_1584 [Streptococcus pneumoniae GA19451]
 gi|353880564|gb|EHE60379.1| hypothetical protein SPAR135_1553 [Streptococcus pneumoniae
           3063-00]
 gi|379138452|gb|AFC95243.1| YlmH protein [Streptococcus pneumoniae ST556]
 gi|379537107|gb|EHZ02292.1| hypothetical protein SPAR6_1636 [Streptococcus pneumoniae GA13499]
 gi|379600527|gb|EHZ65308.1| hypothetical protein SPAR102_1560 [Streptococcus pneumoniae
           GA47628]
 gi|379622067|gb|EHZ86703.1| hypothetical protein SPAR132_1529 [Streptococcus pneumoniae
           4075-00]
 gi|379641210|gb|EIA05748.1| hypothetical protein SPAR156_1525 [Streptococcus pneumoniae
           GA08825]
          Length = 261

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGIACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|15924181|ref|NP_371715.1| hypothetical protein SAV1191 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926774|ref|NP_374307.1| hypothetical protein SA1034 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979512|ref|YP_001441771.1| hypothetical protein SAHV_1181 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|387150334|ref|YP_005741898.1| hypothetical protein SA2981_1149 [Staphylococcus aureus 04-02981]
 gi|13700990|dbj|BAB42286.1| SA1034 [Staphylococcus aureus subsp. aureus N315]
 gi|14246961|dbj|BAB57353.1| YlmH [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721647|dbj|BAF78064.1| hypothetical protein SAHV_1181 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|285816873|gb|ADC37360.1| hypothetical protein, contains S4-like RNA binding domain
           [Staphylococcus aureus 04-02981]
          Length = 212

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 10  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 67

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 68  LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 125

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 126 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 185

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 186 FGRAHITDLGGKTKKDK 202


>gi|419785578|ref|ZP_14311330.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-M]
 gi|383362548|gb|EID39899.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-M]
          Length = 273

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI 306
            GR  I ++
Sbjct: 233 FGRAHITDL 241


>gi|262048764|ref|ZP_06021646.1| hypothetical protein SAD30_1594 [Staphylococcus aureus D30]
 gi|262051690|ref|ZP_06023909.1| hypothetical protein SA930_1517 [Staphylococcus aureus 930918-3]
 gi|259160425|gb|EEW45450.1| hypothetical protein SA930_1517 [Staphylococcus aureus 930918-3]
 gi|259163220|gb|EEW47780.1| hypothetical protein SAD30_1594 [Staphylococcus aureus D30]
          Length = 212

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD ++   + I     F    H   LG+++ 
Sbjct: 10  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 67

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 68  LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 125

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K+     +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 126 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 185

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 186 FGRAHITDLGGKTKKDK 202


>gi|417895603|ref|ZP_12539585.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21235]
 gi|341841500|gb|EGS82957.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21235]
          Length = 210

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 8   DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLIEIDYPEKFITLKHQHILGTLMS 65

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 66  LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 123

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 124 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 183

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 184 FGRAHITDLGGKTKKDK 200


>gi|303255983|ref|ZP_07342011.1| hypothetical protein CGSSpBS455_10815 [Streptococcus pneumoniae
           BS455]
 gi|302597042|gb|EFL64160.1| hypothetical protein CGSSpBS455_10815 [Streptococcus pneumoniae
           BS455]
          Length = 261

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISFQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 CVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|417892121|ref|ZP_12536178.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21200]
 gi|341851407|gb|EGS92336.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21200]
          Length = 259

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P  ER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 57  DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249


>gi|258423765|ref|ZP_05686651.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|418307404|ref|ZP_12919117.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21194]
 gi|257845997|gb|EEV70025.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|365245671|gb|EHM86287.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21194]
          Length = 268

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P  ER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+++   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|429220512|ref|YP_007182156.1| hypothetical protein Deipe_2933 [Deinococcus peraridilitoris DSM
           19664]
 gi|429131375|gb|AFZ68390.1| hypothetical protein Deipe_2933 [Deinococcus peraridilitoris DSM
           19664]
          Length = 236

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 97  VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
           V+ + FL    +   ++  E   +++++  GG+P A R  L++ +P  + S    V+ L 
Sbjct: 22  VVRTGFLDADSIDRRILQDE---EIRSLIAGGFPDARRVLLTL-YPAHIPSVDSGVSVLR 77

Query: 157 ITGNFGFQPCSH-GDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 215
           + G F  +P     DF  ++    +  E++GD  L+ E+GA  L V   A   + SL  +
Sbjct: 78  VIGEF--RPDFEVQDFAVALKQLALPEEQLGD--LREERGAFLLAVTGKAKSTLLSLGTL 133

Query: 216 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 275
            N  +    I     E      K+ + +  SLRVD + + GF +SR+     I  G VR+
Sbjct: 134 ANTKIEVEDIG----EVAGRGAKTREVVVPSLRVDVVGAKGFGVSRAYFQQGIDGGKVRI 189

Query: 276 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 318
           N     +  + +R GD +S  G GR+     +N TR+G F VEL
Sbjct: 190 NGAQ-ARASSEVREGDSLSAEGLGRVDFKRVVNETRRGNFKVEL 232


>gi|237741192|ref|ZP_04571673.1| RNA binding protein [Fusobacterium sp. 4_1_13]
 gi|229430724|gb|EEO40936.1| RNA binding protein [Fusobacterium sp. 4_1_13]
          Length = 241

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +      V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKTDI---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  T D     V    I     F    H  +LG+ILG GI RE +GD+I++  + 
Sbjct: 58  AV-YPEYFTEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNNEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  +    I     E + P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPIEIIEIT----ERDVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISVGDTIIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|15903549|ref|NP_359099.1| hypothetical protein spr1506 [Streptococcus pneumoniae R6]
 gi|15459167|gb|AAL00310.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
          Length = 283

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 66  DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVK 122
           D + KG+    +IE+ +  L+       + E  ++ FLTP   P  ++ +  L K   + 
Sbjct: 21  DRMNKGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLA 79

Query: 123 AVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT- 178
             + G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   
Sbjct: 80  CSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQL 137

Query: 179 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 238
           GI R+  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +
Sbjct: 138 GIERKLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYR 196

Query: 239 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298
                 +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   
Sbjct: 197 ELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKF 256

Query: 299 GRIKI 303
           GR+++
Sbjct: 257 GRLRL 261


>gi|418146904|ref|ZP_12783682.1| hypothetical protein SPAR32_1678 [Streptococcus pneumoniae GA13637]
 gi|353812479|gb|EHD92714.1| hypothetical protein SPAR32_1678 [Streptococcus pneumoniae GA13637]
          Length = 259

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 15/254 (5%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I----GEINSTRKG 312
           +    G+    RK 
Sbjct: 239 LFQDKGQTKKRRKN 252


>gi|421218294|ref|ZP_15675188.1| S4 domain protein [Streptococcus pneumoniae 2070335]
 gi|395583063|gb|EJG43512.1| S4 domain protein [Streptococcus pneumoniae 2070335]
          Length = 252

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|335429598|ref|ZP_08556496.1| hypothetical protein HLPCO_11493 [Haloplasma contractile SSD-17B]
 gi|334889608|gb|EGM27893.1| hypothetical protein HLPCO_11493 [Haloplasma contractile SSD-17B]
          Length = 255

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 16/198 (8%)

Query: 127 GGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
           GGY  AER R  +  P  +T   +I  V    I  N  +   +H + LGS++   + R  
Sbjct: 59  GGYEDAERKRCFIC-PSYMTIYDEIFDVKCYKIEYNKRYVDLNHQNVLGSLMALKVDRSL 117

Query: 185 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE-----PPRTKS 239
            GDII        F V  E+ + ++T  + VG       + P+   +Y+       + K 
Sbjct: 118 FGDIIFDEHDDCYFFVSKEIENLILTEFKTVG-------KYPISLKDYQGKVNYRKKYKL 170

Query: 240 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299
            + I +S+R+D + S+   +SR++   LIS G V VN        T     DI+SV   G
Sbjct: 171 REVIVSSIRLDTVISSVLNVSRNQASELISKGAVSVNSKLTYYQATKCEVKDIISVRKFG 230

Query: 300 RIKIGEIN-STRKGKFAV 316
           RI I  I   T++ K  V
Sbjct: 231 RIIIDGIKGKTKRSKLIV 248


>gi|419767002|ref|ZP_14293173.1| S4 domain protein [Streptococcus mitis SK579]
 gi|383353520|gb|EID31129.1| S4 domain protein [Streptococcus mitis SK579]
          Length = 261

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRILL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|418976821|ref|ZP_13524666.1| S4 domain protein [Streptococcus mitis SK575]
 gi|383350820|gb|EID28671.1| S4 domain protein [Streptococcus mitis SK575]
          Length = 261

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEDRPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 CVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|168491455|ref|ZP_02715598.1| YlmH protein [Streptococcus pneumoniae CDC0288-04]
 gi|225857278|ref|YP_002738789.1| YlmH protein [Streptococcus pneumoniae P1031]
 gi|418194229|ref|ZP_12830718.1| hypothetical protein SPAR119_1515 [Streptococcus pneumoniae
           GA47439]
 gi|421232366|ref|ZP_15689007.1| S4 domain protein [Streptococcus pneumoniae 2080076]
 gi|421236752|ref|ZP_15693349.1| S4 domain protein [Streptococcus pneumoniae 2071004]
 gi|444409145|ref|ZP_21205743.1| S4 domain protein [Streptococcus pneumoniae PNI0076]
 gi|444412805|ref|ZP_21209124.1| S4 domain protein [Streptococcus pneumoniae PNI0153]
 gi|444414509|ref|ZP_21210766.1| S4 domain protein [Streptococcus pneumoniae PNI0199]
 gi|444422001|ref|ZP_21217666.1| S4 domain protein [Streptococcus pneumoniae PNI0446]
 gi|183574265|gb|EDT94793.1| YlmH protein [Streptococcus pneumoniae CDC0288-04]
 gi|225724661|gb|ACO20513.1| YlmH protein [Streptococcus pneumoniae P1031]
 gi|353857807|gb|EHE37769.1| hypothetical protein SPAR119_1515 [Streptococcus pneumoniae
           GA47439]
 gi|395594869|gb|EJG55104.1| S4 domain protein [Streptococcus pneumoniae 2080076]
 gi|395601515|gb|EJG61662.1| S4 domain protein [Streptococcus pneumoniae 2071004]
 gi|444274044|gb|ELU79699.1| S4 domain protein [Streptococcus pneumoniae PNI0153]
 gi|444280070|gb|ELU85446.1| S4 domain protein [Streptococcus pneumoniae PNI0076]
 gi|444281651|gb|ELU86959.1| S4 domain protein [Streptococcus pneumoniae PNI0199]
 gi|444288625|gb|ELU93516.1| S4 domain protein [Streptococcus pneumoniae PNI0446]
          Length = 261

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELNL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|307709599|ref|ZP_07646052.1| S4 domain protein [Streptococcus mitis SK564]
 gi|307619635|gb|EFN98758.1| S4 domain protein [Streptococcus mitis SK564]
          Length = 261

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQ 126
           +G+    +IE+ +  L+       + E  ++ FLTP   P  ++ +  L K   +   + 
Sbjct: 3   RGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLSCSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVLSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFENLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDDER-AQIMINQQFILLFQDGLKKIGRIPVSLEERPFTDKIDKLEQYREIDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S+  KLSRS+   L+    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 CVSSFRLDVLLSSVLKLSRSQANQLVEKKLVQVNYHIVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|418121718|ref|ZP_12758661.1| hypothetical protein SPAR80_1589 [Streptococcus pneumoniae GA44194]
 gi|418185412|ref|ZP_12821953.1| hypothetical protein SPAR91_1601 [Streptococcus pneumoniae GA47283]
 gi|418232663|ref|ZP_12859249.1| hypothetical protein SPAR13_1573 [Streptococcus pneumoniae GA07228]
 gi|419523865|ref|ZP_14063440.1| S4 domain protein [Streptococcus pneumoniae GA13723]
 gi|421271072|ref|ZP_15721926.1| hypothetical protein SPAR48_1627 [Streptococcus pneumoniae SPAR48]
 gi|353792554|gb|EHD72926.1| hypothetical protein SPAR80_1589 [Streptococcus pneumoniae GA44194]
 gi|353848696|gb|EHE28708.1| hypothetical protein SPAR91_1601 [Streptococcus pneumoniae GA47283]
 gi|353885976|gb|EHE65760.1| hypothetical protein SPAR13_1573 [Streptococcus pneumoniae GA07228]
 gi|379556273|gb|EHZ21328.1| S4 domain protein [Streptococcus pneumoniae GA13723]
 gi|395867286|gb|EJG78410.1| hypothetical protein SPAR48_1627 [Streptococcus pneumoniae SPAR48]
          Length = 259

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 15/254 (5%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I----GEINSTRKG 312
           +    G+    RK 
Sbjct: 239 LLQDKGQTKKRRKN 252


>gi|417679626|ref|ZP_12329022.1| hypothetical protein SPAR50_1662 [Streptococcus pneumoniae GA17570]
 gi|417694539|ref|ZP_12343726.1| hypothetical protein SPAR120_1594 [Streptococcus pneumoniae
           GA47901]
 gi|417696823|ref|ZP_12346001.1| hypothetical protein SPAR93_1698 [Streptococcus pneumoniae GA47368]
 gi|418083467|ref|ZP_12720664.1| hypothetical protein SPAR81_1557 [Streptococcus pneumoniae GA44288]
 gi|418092266|ref|ZP_12729406.1| hypothetical protein SPAR84_1640 [Streptococcus pneumoniae GA44452]
 gi|418096764|ref|ZP_12733875.1| hypothetical protein SPAR40_1695 [Streptococcus pneumoniae GA16531]
 gi|418108089|ref|ZP_12745126.1| hypothetical protein SPAR70_1636 [Streptococcus pneumoniae GA41410]
 gi|418130808|ref|ZP_12767691.1| hypothetical protein SPAR14_1607 [Streptococcus pneumoniae GA07643]
 gi|418137724|ref|ZP_12774562.1| hypothetical protein SPAR24_1624 [Streptococcus pneumoniae GA11663]
 gi|418178707|ref|ZP_12815290.1| hypothetical protein SPAR73_1641 [Streptococcus pneumoniae GA41565]
 gi|418183188|ref|ZP_12819746.1| hypothetical protein SPAR78_1596 [Streptococcus pneumoniae GA43380]
 gi|418198488|ref|ZP_12834946.1| hypothetical protein SPAR106_1576 [Streptococcus pneumoniae
           GA47778]
 gi|418214856|ref|ZP_12841590.1| hypothetical protein SPAR118_1659 [Streptococcus pneumoniae
           GA54644]
 gi|418223863|ref|ZP_12850503.1| hypothetical protein SPAR127_1564 [Streptococcus pneumoniae
           5185-06]
 gi|419427719|ref|ZP_13967900.1| hypothetical protein SPAR130_1519 [Streptococcus pneumoniae
           5652-06]
 gi|419436459|ref|ZP_13976546.1| hypothetical protein SPAR126_1527 [Streptococcus pneumoniae
           8190-05]
 gi|419445169|ref|ZP_13985184.1| hypothetical protein SPAR60_1518 [Streptococcus pneumoniae GA19923]
 gi|419447320|ref|ZP_13987325.1| hypothetical protein SPAR129_1557 [Streptococcus pneumoniae
           7879-04]
 gi|419460472|ref|ZP_14000400.1| hypothetical protein SPAR2_1648 [Streptococcus pneumoniae GA02270]
 gi|419480501|ref|ZP_14020305.1| hypothetical protein SPAR57_1571 [Streptococcus pneumoniae GA19101]
 gi|419500208|ref|ZP_14039902.1| hypothetical protein SPAR101_1586 [Streptococcus pneumoniae
           GA47597]
 gi|421213598|ref|ZP_15670552.1| S4 domain protein [Streptococcus pneumoniae 2070108]
 gi|444382294|ref|ZP_21180497.1| S4 domain protein [Streptococcus pneumoniae PCS8106]
 gi|332072491|gb|EGI82974.1| hypothetical protein SPAR50_1662 [Streptococcus pneumoniae GA17570]
 gi|332200221|gb|EGJ14294.1| hypothetical protein SPAR93_1698 [Streptococcus pneumoniae GA47368]
 gi|332201088|gb|EGJ15159.1| hypothetical protein SPAR120_1594 [Streptococcus pneumoniae
           GA47901]
 gi|353754687|gb|EHD35299.1| hypothetical protein SPAR81_1557 [Streptococcus pneumoniae GA44288]
 gi|353762966|gb|EHD43523.1| hypothetical protein SPAR84_1640 [Streptococcus pneumoniae GA44452]
 gi|353768485|gb|EHD49009.1| hypothetical protein SPAR40_1695 [Streptococcus pneumoniae GA16531]
 gi|353778366|gb|EHD58834.1| hypothetical protein SPAR70_1636 [Streptococcus pneumoniae GA41410]
 gi|353802132|gb|EHD82432.1| hypothetical protein SPAR14_1607 [Streptococcus pneumoniae GA07643]
 gi|353842766|gb|EHE22812.1| hypothetical protein SPAR73_1641 [Streptococcus pneumoniae GA41565]
 gi|353848171|gb|EHE28188.1| hypothetical protein SPAR78_1596 [Streptococcus pneumoniae GA43380]
 gi|353861598|gb|EHE41533.1| hypothetical protein SPAR106_1576 [Streptococcus pneumoniae
           GA47778]
 gi|353869586|gb|EHE49467.1| hypothetical protein SPAR118_1659 [Streptococcus pneumoniae
           GA54644]
 gi|353878661|gb|EHE58491.1| hypothetical protein SPAR127_1564 [Streptococcus pneumoniae
           5185-06]
 gi|353900679|gb|EHE76230.1| hypothetical protein SPAR24_1624 [Streptococcus pneumoniae GA11663]
 gi|379530608|gb|EHY95847.1| hypothetical protein SPAR2_1648 [Streptococcus pneumoniae GA02270]
 gi|379569670|gb|EHZ34637.1| hypothetical protein SPAR57_1571 [Streptococcus pneumoniae GA19101]
 gi|379572862|gb|EHZ37819.1| hypothetical protein SPAR60_1518 [Streptococcus pneumoniae GA19923]
 gi|379599516|gb|EHZ64299.1| hypothetical protein SPAR101_1586 [Streptococcus pneumoniae
           GA47597]
 gi|379612898|gb|EHZ77613.1| hypothetical protein SPAR126_1527 [Streptococcus pneumoniae
           8190-05]
 gi|379614860|gb|EHZ79570.1| hypothetical protein SPAR129_1557 [Streptococcus pneumoniae
           7879-04]
 gi|379617912|gb|EHZ82592.1| hypothetical protein SPAR130_1519 [Streptococcus pneumoniae
           5652-06]
 gi|395578829|gb|EJG39339.1| S4 domain protein [Streptococcus pneumoniae 2070108]
 gi|444252568|gb|ELU59030.1| S4 domain protein [Streptococcus pneumoniae PCS8106]
          Length = 252

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|415683779|ref|ZP_11448981.1| hypothetical protein CGSSa00_05208 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315194077|gb|EFU24470.1| hypothetical protein CGSSa00_05208 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 268

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 120 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
           D+     GG P AER R  +S  + E   SD D+   + I     F    H   LG+++ 
Sbjct: 66  DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123

Query: 178 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 237
            GI RE++GDII+   +  QF++   L  +++  L+ +   SV    IP+  +       
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQCIKGASVKLYTIPVTDMIQSNENW 181

Query: 238 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297
           K      +SLR+D +     + SR+    LI    V+VN T V      L+  D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241

Query: 298 KGRIKIGEI-NSTRKGK 313
            GR  I ++   T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258


>gi|418169761|ref|ZP_12806402.1| hypothetical protein SPAR56_1856 [Streptococcus pneumoniae GA19077]
 gi|419535118|ref|ZP_14074617.1| S4 domain protein [Streptococcus pneumoniae GA17457]
 gi|353833740|gb|EHE13848.1| hypothetical protein SPAR56_1856 [Streptococcus pneumoniae GA19077]
 gi|379563279|gb|EHZ28283.1| S4 domain protein [Streptococcus pneumoniae GA17457]
          Length = 259

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 15/254 (5%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I----GEINSTRKG 312
           +    G+    RK 
Sbjct: 239 LLQDKGQTKKRRKN 252


>gi|34762555|ref|ZP_00143551.1| RNA binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887776|gb|EAA24849.1| RNA binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 241

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 20/251 (7%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++  +  +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLVEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
           +V +PE  T D     V    I     F    H  +LG+ILG GI RE +GD+I++  + 
Sbjct: 58  AV-YPEYFTEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNNEC 116

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDAL 252
              +++  + D+L  +L ++ +  +    I     E + P+ + FK +    +SLR+D+L
Sbjct: 117 YG-IILENMFDFLKENLLRINSSPIEIIEIT----EKDVPQNE-FKELNIRLSSLRLDSL 170

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRK 311
            S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ +I E N  T+K
Sbjct: 171 VSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRILVGDTIIIKKYGKFRIEEENGLTKK 230

Query: 312 GKFAVELIQYL 322
            K  + + +Y+
Sbjct: 231 DKVKLIVRKYI 241


>gi|418606280|ref|ZP_13169568.1| DivIVA protein [Staphylococcus epidermidis VCU057]
 gi|374408673|gb|EHQ79485.1| DivIVA protein [Staphylococcus epidermidis VCU057]
          Length = 446

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 5/186 (2%)

Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 185
           G P AER R  +  P      P+          +   F    H   LG+++  GI R+++
Sbjct: 25  GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83

Query: 186 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 245
           GDII+ GE   QF++  +L  Y+I+ L ++   SV    IP   +       K   T  +
Sbjct: 84  GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141

Query: 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305
           +LR+D +       SR+    LI    V+VN T +      L   D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201

Query: 306 INSTRK 311
           I   +K
Sbjct: 202 IGGKQK 207


>gi|417687107|ref|ZP_12336381.1| hypothetical protein SPAR68_1670 [Streptococcus pneumoniae GA41301]
 gi|418074482|ref|ZP_12711735.1| hypothetical protein SPAR19_1626 [Streptococcus pneumoniae GA11184]
 gi|418090016|ref|ZP_12727170.1| hypothetical protein SPAR77_1606 [Streptococcus pneumoniae GA43265]
 gi|418105762|ref|ZP_12742818.1| hypothetical protein SPAR85_1690 [Streptococcus pneumoniae GA44500]
 gi|418134694|ref|ZP_12771551.1| hypothetical protein SPAR23_0964 [Streptococcus pneumoniae GA11426]
 gi|418160365|ref|ZP_12797064.1| hypothetical protein SPAR43_1706 [Streptococcus pneumoniae GA17227]
 gi|418174050|ref|ZP_12810662.1| hypothetical protein SPAR67_1656 [Streptococcus pneumoniae GA41277]
 gi|418202872|ref|ZP_12839301.1| hypothetical protein SPAR115_1593 [Streptococcus pneumoniae
           GA52306]
 gi|418217102|ref|ZP_12843782.1| hypothetical protein SPAR147_1574 [Streptococcus pneumoniae
           Netherlands15B-37]
 gi|419432036|ref|ZP_13972169.1| hypothetical protein SPAR140_1575 [Streptococcus pneumoniae
           EU-NP05]
 gi|419440844|ref|ZP_13980889.1| hypothetical protein SPAR64_1589 [Streptococcus pneumoniae GA40410]
 gi|419498026|ref|ZP_14037733.1| hypothetical protein SPAR99_1587 [Streptococcus pneumoniae GA47522]
 gi|421225493|ref|ZP_15682231.1| S4 domain protein [Streptococcus pneumoniae 2070768]
 gi|421243589|ref|ZP_15700102.1| S4 domain protein [Streptococcus pneumoniae 2081074]
 gi|421266652|ref|ZP_15717532.1| hypothetical protein SPAR27_1553 [Streptococcus pneumoniae SPAR27]
 gi|421273317|ref|ZP_15724157.1| hypothetical protein SPAR55_1615 [Streptococcus pneumoniae SPAR55]
 gi|332073997|gb|EGI84475.1| hypothetical protein SPAR68_1670 [Streptococcus pneumoniae GA41301]
 gi|353748551|gb|EHD29203.1| hypothetical protein SPAR19_1626 [Streptococcus pneumoniae GA11184]
 gi|353761207|gb|EHD41779.1| hypothetical protein SPAR77_1606 [Streptococcus pneumoniae GA43265]
 gi|353775938|gb|EHD56417.1| hypothetical protein SPAR85_1690 [Streptococcus pneumoniae GA44500]
 gi|353822098|gb|EHE02274.1| hypothetical protein SPAR43_1706 [Streptococcus pneumoniae GA17227]
 gi|353838006|gb|EHE18087.1| hypothetical protein SPAR67_1656 [Streptococcus pneumoniae GA41277]
 gi|353867429|gb|EHE47324.1| hypothetical protein SPAR115_1593 [Streptococcus pneumoniae
           GA52306]
 gi|353870375|gb|EHE50248.1| hypothetical protein SPAR147_1574 [Streptococcus pneumoniae
           Netherlands15B-37]
 gi|353901931|gb|EHE77461.1| hypothetical protein SPAR23_0964 [Streptococcus pneumoniae GA11426]
 gi|379577914|gb|EHZ42831.1| hypothetical protein SPAR64_1589 [Streptococcus pneumoniae GA40410]
 gi|379598859|gb|EHZ63644.1| hypothetical protein SPAR99_1587 [Streptococcus pneumoniae GA47522]
 gi|379629117|gb|EHZ93718.1| hypothetical protein SPAR140_1575 [Streptococcus pneumoniae
           EU-NP05]
 gi|395588980|gb|EJG49302.1| S4 domain protein [Streptococcus pneumoniae 2070768]
 gi|395606594|gb|EJG66698.1| S4 domain protein [Streptococcus pneumoniae 2081074]
 gi|395866720|gb|EJG77848.1| hypothetical protein SPAR27_1553 [Streptococcus pneumoniae SPAR27]
 gi|395873748|gb|EJG84838.1| hypothetical protein SPAR55_1615 [Streptococcus pneumoniae SPAR55]
          Length = 252

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|15901497|ref|NP_346101.1| hypothetical protein SP_1662 [Streptococcus pneumoniae TIGR4]
 gi|111658558|ref|ZP_01409221.1| hypothetical protein SpneT_02000314 [Streptococcus pneumoniae
           TIGR4]
 gi|148984099|ref|ZP_01817394.1| ylmH protein [Streptococcus pneumoniae SP3-BS71]
 gi|148988709|ref|ZP_01820142.1| ylmH protein [Streptococcus pneumoniae SP6-BS73]
 gi|148993766|ref|ZP_01823193.1| ylmH protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997713|ref|ZP_01825277.1| ylmH protein [Streptococcus pneumoniae SP11-BS70]
 gi|149006731|ref|ZP_01830417.1| ylmH protein [Streptococcus pneumoniae SP18-BS74]
 gi|149011476|ref|ZP_01832723.1| ylmH protein [Streptococcus pneumoniae SP19-BS75]
 gi|168483468|ref|ZP_02708420.1| YlmH protein [Streptococcus pneumoniae CDC1873-00]
 gi|168486969|ref|ZP_02711477.1| YlmH protein [Streptococcus pneumoniae CDC1087-00]
 gi|168488624|ref|ZP_02712823.1| YlmH protein [Streptococcus pneumoniae SP195]
 gi|168575149|ref|ZP_02721112.1| YlmH protein [Streptococcus pneumoniae MLV-016]
 gi|182684604|ref|YP_001836351.1| ylmH protein [Streptococcus pneumoniae CGSP14]
 gi|194398742|ref|YP_002038276.1| YlmH protein [Streptococcus pneumoniae G54]
 gi|221232399|ref|YP_002511552.1| hypothetical protein SPN23F_16630 [Streptococcus pneumoniae ATCC
           700669]
 gi|298230127|ref|ZP_06963808.1| hypothetical protein SpneCMD_05606 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254434|ref|ZP_06978020.1| hypothetical protein SpneCM_02315 [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503406|ref|YP_003725346.1| 30S ribosomal protein S4e [Streptococcus pneumoniae TCH8431/19A]
 gi|303258591|ref|ZP_07344571.1| ylmH protein [Streptococcus pneumoniae SP-BS293]
 gi|303262678|ref|ZP_07348618.1| ylmH protein [Streptococcus pneumoniae SP14-BS292]
 gi|303263618|ref|ZP_07349540.1| ylmH protein [Streptococcus pneumoniae BS397]
 gi|303266379|ref|ZP_07352268.1| ylmH protein [Streptococcus pneumoniae BS457]
 gi|303268252|ref|ZP_07354050.1| ylmH protein [Streptococcus pneumoniae BS458]
 gi|307068287|ref|YP_003877253.1| hypothetical protein SPAP_1667 [Streptococcus pneumoniae AP200]
 gi|387626857|ref|YP_006063033.1| hypothetical protein INV104_14130 [Streptococcus pneumoniae INV104]
 gi|387757884|ref|YP_006064863.1| hypothetical protein SPNOXC_14590 [Streptococcus pneumoniae OXC141]
 gi|387759775|ref|YP_006066753.1| hypothetical protein SPNINV200_14850 [Streptococcus pneumoniae
           INV200]
 gi|415700125|ref|ZP_11457839.1| S4 domain protein [Streptococcus pneumoniae 459-5]
 gi|415750052|ref|ZP_11477996.1| S4 domain protein [Streptococcus pneumoniae SV35]
 gi|415752866|ref|ZP_11479848.1| S4 domain protein [Streptococcus pneumoniae SV36]
 gi|418076879|ref|ZP_12714112.1| hypothetical protein SPAR98_1806 [Streptococcus pneumoniae GA47502]
 gi|418079085|ref|ZP_12716307.1| hypothetical protein SPAR123_1532 [Streptococcus pneumoniae
           4027-06]
 gi|418081282|ref|ZP_12718492.1| hypothetical protein SPAR121_1579 [Streptococcus pneumoniae
           6735-05]
 gi|418101122|ref|ZP_12738205.1| hypothetical protein SPAR128_1541 [Streptococcus pneumoniae
           7286-06]
 gi|418123985|ref|ZP_12760916.1| hypothetical protein SPAR82_1654 [Streptococcus pneumoniae GA44378]
 gi|418128529|ref|ZP_12765422.1| hypothetical protein SPAR144_1609 [Streptococcus pneumoniae NP170]
 gi|418139988|ref|ZP_12776813.1| hypothetical protein SPAR28_1627 [Streptococcus pneumoniae GA13338]
 gi|418162708|ref|ZP_12799389.1| hypothetical protein SPAR49_1699 [Streptococcus pneumoniae GA17328]
 gi|418167262|ref|ZP_12803917.1| hypothetical protein SPAR52_1687 [Streptococcus pneumoniae GA17971]
 gi|418176450|ref|ZP_12813041.1| hypothetical protein SPAR71_1685 [Streptococcus pneumoniae GA41437]
 gi|418181017|ref|ZP_12817586.1| hypothetical protein SPAR74_1628 [Streptococcus pneumoniae GA41688]
 gi|418187641|ref|ZP_12824164.1| hypothetical protein SPAR92_1615 [Streptococcus pneumoniae GA47360]
 gi|418189897|ref|ZP_12826409.1| hypothetical protein SPAR94_1661 [Streptococcus pneumoniae GA47373]
 gi|418192098|ref|ZP_12828600.1| hypothetical protein SPAR96_1631 [Streptococcus pneumoniae GA47388]
 gi|418196321|ref|ZP_12832797.1| hypothetical protein SPAR103_1517 [Streptococcus pneumoniae
           GA47688]
 gi|418200736|ref|ZP_12837179.1| hypothetical protein SPAR109_1617 [Streptococcus pneumoniae
           GA47976]
 gi|418219390|ref|ZP_12846055.1| hypothetical protein SPAR145_1678 [Streptococcus pneumoniae NP127]
 gi|418221692|ref|ZP_12848345.1| hypothetical protein SPAR104_1625 [Streptococcus pneumoniae
           GA47751]
 gi|418230433|ref|ZP_12857032.1| hypothetical protein SPAR136_1682 [Streptococcus pneumoniae
           EU-NP01]
 gi|418234859|ref|ZP_12861435.1| hypothetical protein SPAR17_1642 [Streptococcus pneumoniae GA08780]
 gi|418237118|ref|ZP_12863684.1| hypothetical protein SPAR59_1672 [Streptococcus pneumoniae GA19690]
 gi|418239188|ref|ZP_12865739.1| hypothetical protein SPAR146_1645 [Streptococcus pneumoniae
           NorthCarolina6A-23]
 gi|419425604|ref|ZP_13965800.1| hypothetical protein SPAR131_1534 [Streptococcus pneumoniae
           7533-05]
 gi|419443021|ref|ZP_13983048.1| hypothetical protein SPAR26_1580 [Streptococcus pneumoniae GA13224]
 gi|419450955|ref|ZP_13990941.1| hypothetical protein SPAR137_0931 [Streptococcus pneumoniae
           EU-NP02]
 gi|419462825|ref|ZP_14002728.1| hypothetical protein SPAR3_1721 [Streptococcus pneumoniae GA02714]
 gi|419471549|ref|ZP_14011408.1| hypothetical protein SPAR15_1502 [Streptococcus pneumoniae GA07914]
 gi|419473716|ref|ZP_14013565.1| hypothetical protein SPAR29_1588 [Streptococcus pneumoniae GA13430]
 gi|419478299|ref|ZP_14018123.1| hypothetical protein SPAR53_1633 [Streptococcus pneumoniae GA18068]
 gi|419482700|ref|ZP_14022487.1| hypothetical protein SPAR65_1620 [Streptococcus pneumoniae GA40563]
 gi|419484890|ref|ZP_14024665.1| hypothetical protein SPAR75_1627 [Streptococcus pneumoniae GA43257]
 gi|419489143|ref|ZP_14028892.1| hypothetical protein SPAR83_1651 [Streptococcus pneumoniae GA44386]
 gi|419491562|ref|ZP_14031300.1| hypothetical protein SPAR88_1556 [Streptococcus pneumoniae GA47179]
 gi|419504398|ref|ZP_14044066.1| hypothetical protein SPAR105_1481 [Streptococcus pneumoniae
           GA47760]
 gi|419510926|ref|ZP_14050567.1| hypothetical protein SPAR142_1593 [Streptococcus pneumoniae NP141]
 gi|419515168|ref|ZP_14054793.1| hypothetical protein SPAR152_1533 [Streptococcus pneumoniae
           England14-9]
 gi|419526379|ref|ZP_14065937.1| S4 domain protein [Streptococcus pneumoniae GA14373]
 gi|419530600|ref|ZP_14070127.1| S4 domain protein [Streptococcus pneumoniae GA40028]
 gi|419532862|ref|ZP_14072377.1| S4 domain protein [Streptococcus pneumoniae GA47794]
 gi|421211534|ref|ZP_15668516.1| S4 domain protein [Streptococcus pneumoniae 2070035]
 gi|421215760|ref|ZP_15672681.1| S4 domain protein [Streptococcus pneumoniae 2070109]
 gi|421238990|ref|ZP_15695554.1| S4 domain protein [Streptococcus pneumoniae 2071247]
 gi|421245500|ref|ZP_15701998.1| S4 domain protein [Streptococcus pneumoniae 2081685]
 gi|421247930|ref|ZP_15704409.1| S4 domain protein [Streptococcus pneumoniae 2082170]
 gi|421268822|ref|ZP_15719691.1| hypothetical protein SPAR95_1586 [Streptococcus pneumoniae SPAR95]
 gi|421275376|ref|ZP_15726205.1| hypothetical protein SPAR117_1384 [Streptococcus pneumoniae
           GA52612]
 gi|421279437|ref|ZP_15730243.1| hypothetical protein SPAR44_1634 [Streptococcus pneumoniae GA17301]
 gi|421287931|ref|ZP_15738694.1| ylmH [Streptococcus pneumoniae GA58771]
 gi|421294655|ref|ZP_15745376.1| ylmH [Streptococcus pneumoniae GA56113]
 gi|421296496|ref|ZP_15747205.1| ylmH [Streptococcus pneumoniae GA58581]
 gi|421301515|ref|ZP_15752185.1| ylmH [Streptococcus pneumoniae GA19998]
 gi|421314537|ref|ZP_15765124.1| ylmH [Streptococcus pneumoniae GA47562]
 gi|444385531|ref|ZP_21183603.1| S4 domain protein [Streptococcus pneumoniae PCS8203]
 gi|4009474|gb|AAC95444.1| YlmH [Streptococcus pneumoniae G54]
 gi|14973153|gb|AAK75741.1| ylmH protein [Streptococcus pneumoniae TIGR4]
 gi|147756212|gb|EDK63254.1| ylmH protein [Streptococcus pneumoniae SP11-BS70]
 gi|147761646|gb|EDK68610.1| ylmH protein [Streptococcus pneumoniae SP18-BS74]
 gi|147764466|gb|EDK71397.1| ylmH protein [Streptococcus pneumoniae SP19-BS75]
 gi|147923388|gb|EDK74501.1| ylmH protein [Streptococcus pneumoniae SP3-BS71]
 gi|147925910|gb|EDK76985.1| ylmH protein [Streptococcus pneumoniae SP6-BS73]
 gi|147927722|gb|EDK78746.1| ylmH protein [Streptococcus pneumoniae SP9-BS68]
 gi|172043115|gb|EDT51161.1| YlmH protein [Streptococcus pneumoniae CDC1873-00]
 gi|182629938|gb|ACB90886.1| ylmH protein [Streptococcus pneumoniae CGSP14]
 gi|183570103|gb|EDT90631.1| YlmH protein [Streptococcus pneumoniae CDC1087-00]
 gi|183572630|gb|EDT93158.1| YlmH protein [Streptococcus pneumoniae SP195]
 gi|183578732|gb|EDT99260.1| YlmH protein [Streptococcus pneumoniae MLV-016]
 gi|194358409|gb|ACF56857.1| YlmH protein [Streptococcus pneumoniae G54]
 gi|220674860|emb|CAR69435.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239001|gb|ADI70132.1| ribosomal protein S4e [Streptococcus pneumoniae TCH8431/19A]
 gi|301794643|emb|CBW37094.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
 gi|301800473|emb|CBW33112.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
 gi|301802364|emb|CBW35118.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302636234|gb|EFL66729.1| ylmH protein [Streptococcus pneumoniae SP14-BS292]
 gi|302640092|gb|EFL70547.1| ylmH protein [Streptococcus pneumoniae SP-BS293]
 gi|302642203|gb|EFL72552.1| ylmH protein [Streptococcus pneumoniae BS458]
 gi|302644079|gb|EFL74337.1| ylmH protein [Streptococcus pneumoniae BS457]
 gi|302646656|gb|EFL76881.1| ylmH protein [Streptococcus pneumoniae BS397]
 gi|306409824|gb|ADM85251.1| hypothetical protein SPAP_1667 [Streptococcus pneumoniae AP200]
 gi|353746612|gb|EHD27272.1| hypothetical protein SPAR123_1532 [Streptococcus pneumoniae
           4027-06]
 gi|353747019|gb|EHD27677.1| hypothetical protein SPAR98_1806 [Streptococcus pneumoniae GA47502]
 gi|353752021|gb|EHD32652.1| hypothetical protein SPAR121_1579 [Streptococcus pneumoniae
           6735-05]
 gi|353770622|gb|EHD51134.1| hypothetical protein SPAR128_1541 [Streptococcus pneumoniae
           7286-06]
 gi|353795805|gb|EHD76151.1| hypothetical protein SPAR82_1654 [Streptococcus pneumoniae GA44378]
 gi|353799028|gb|EHD79351.1| hypothetical protein SPAR144_1609 [Streptococcus pneumoniae NP170]
 gi|353826770|gb|EHE06927.1| hypothetical protein SPAR49_1699 [Streptococcus pneumoniae GA17328]
 gi|353829254|gb|EHE09388.1| hypothetical protein SPAR52_1687 [Streptococcus pneumoniae GA17971]
 gi|353840521|gb|EHE20585.1| hypothetical protein SPAR71_1685 [Streptococcus pneumoniae GA41437]
 gi|353843089|gb|EHE23134.1| hypothetical protein SPAR74_1628 [Streptococcus pneumoniae GA41688]
 gi|353849626|gb|EHE29631.1| hypothetical protein SPAR92_1615 [Streptococcus pneumoniae GA47360]
 gi|353853624|gb|EHE33605.1| hypothetical protein SPAR94_1661 [Streptococcus pneumoniae GA47373]
 gi|353855184|gb|EHE35154.1| hypothetical protein SPAR96_1631 [Streptococcus pneumoniae GA47388]
 gi|353860332|gb|EHE40277.1| hypothetical protein SPAR103_1517 [Streptococcus pneumoniae
           GA47688]
 gi|353864277|gb|EHE44195.1| hypothetical protein SPAR109_1617 [Streptococcus pneumoniae
           GA47976]
 gi|353873750|gb|EHE53609.1| hypothetical protein SPAR145_1678 [Streptococcus pneumoniae NP127]
 gi|353875002|gb|EHE54856.1| hypothetical protein SPAR104_1625 [Streptococcus pneumoniae
           GA47751]
 gi|353885314|gb|EHE65103.1| hypothetical protein SPAR136_1682 [Streptococcus pneumoniae
           EU-NP01]
 gi|353886481|gb|EHE66263.1| hypothetical protein SPAR17_1642 [Streptococcus pneumoniae GA08780]
 gi|353891556|gb|EHE71310.1| hypothetical protein SPAR59_1672 [Streptococcus pneumoniae GA19690]
 gi|353892179|gb|EHE71928.1| hypothetical protein SPAR146_1645 [Streptococcus pneumoniae
           NorthCarolina6A-23]
 gi|353904767|gb|EHE80217.1| hypothetical protein SPAR28_1627 [Streptococcus pneumoniae GA13338]
 gi|379530257|gb|EHY95497.1| hypothetical protein SPAR3_1721 [Streptococcus pneumoniae GA02714]
 gi|379546265|gb|EHZ11404.1| hypothetical protein SPAR15_1502 [Streptococcus pneumoniae GA07914]
 gi|379550880|gb|EHZ15976.1| hypothetical protein SPAR29_1588 [Streptococcus pneumoniae GA13430]
 gi|379551721|gb|EHZ16815.1| hypothetical protein SPAR26_1580 [Streptococcus pneumoniae GA13224]
 gi|379557019|gb|EHZ22066.1| S4 domain protein [Streptococcus pneumoniae GA14373]
 gi|379565735|gb|EHZ30727.1| hypothetical protein SPAR53_1633 [Streptococcus pneumoniae GA18068]
 gi|379573508|gb|EHZ38463.1| S4 domain protein [Streptococcus pneumoniae GA40028]
 gi|379579292|gb|EHZ44199.1| hypothetical protein SPAR65_1620 [Streptococcus pneumoniae GA40563]
 gi|379581643|gb|EHZ46527.1| hypothetical protein SPAR75_1627 [Streptococcus pneumoniae GA43257]
 gi|379586685|gb|EHZ51535.1| hypothetical protein SPAR83_1651 [Streptococcus pneumoniae GA44386]
 gi|379592924|gb|EHZ57739.1| hypothetical protein SPAR88_1556 [Streptococcus pneumoniae GA47179]
 gi|379605382|gb|EHZ70133.1| S4 domain protein [Streptococcus pneumoniae GA47794]
 gi|379605786|gb|EHZ70536.1| hypothetical protein SPAR105_1481 [Streptococcus pneumoniae
           GA47760]
 gi|379619065|gb|EHZ83739.1| hypothetical protein SPAR131_1534 [Streptococcus pneumoniae
           7533-05]
 gi|379622660|gb|EHZ87294.1| hypothetical protein SPAR137_0931 [Streptococcus pneumoniae
           EU-NP02]
 gi|379631529|gb|EHZ96106.1| hypothetical protein SPAR142_1593 [Streptococcus pneumoniae NP141]
 gi|379635717|gb|EIA00276.1| hypothetical protein SPAR152_1533 [Streptococcus pneumoniae
           England14-9]
 gi|381308513|gb|EIC49356.1| S4 domain protein [Streptococcus pneumoniae SV36]
 gi|381314821|gb|EIC55587.1| S4 domain protein [Streptococcus pneumoniae 459-5]
 gi|381318346|gb|EIC59071.1| S4 domain protein [Streptococcus pneumoniae SV35]
 gi|395572642|gb|EJG33237.1| S4 domain protein [Streptococcus pneumoniae 2070035]
 gi|395579967|gb|EJG40462.1| S4 domain protein [Streptococcus pneumoniae 2070109]
 gi|395600633|gb|EJG60788.1| S4 domain protein [Streptococcus pneumoniae 2071247]
 gi|395608027|gb|EJG68123.1| S4 domain protein [Streptococcus pneumoniae 2081685]
 gi|395612946|gb|EJG72979.1| S4 domain protein [Streptococcus pneumoniae 2082170]
 gi|395869076|gb|EJG80192.1| hypothetical protein SPAR95_1586 [Streptococcus pneumoniae SPAR95]
 gi|395873340|gb|EJG84432.1| hypothetical protein SPAR117_1384 [Streptococcus pneumoniae
           GA52612]
 gi|395878930|gb|EJG89992.1| hypothetical protein SPAR44_1634 [Streptococcus pneumoniae GA17301]
 gi|395886494|gb|EJG97510.1| ylmH [Streptococcus pneumoniae GA58771]
 gi|395893224|gb|EJH04211.1| ylmH [Streptococcus pneumoniae GA56113]
 gi|395895369|gb|EJH06344.1| ylmH [Streptococcus pneumoniae GA58581]
 gi|395899075|gb|EJH10019.1| ylmH [Streptococcus pneumoniae GA19998]
 gi|395913222|gb|EJH24075.1| ylmH [Streptococcus pneumoniae GA47562]
 gi|429316508|emb|CCP36215.1| conserved hypothetical protein [Streptococcus pneumoniae SPN034156]
 gi|429319849|emb|CCP33166.1| conserved hypothetical protein [Streptococcus pneumoniae SPN034183]
 gi|429321665|emb|CCP35140.1| conserved hypothetical protein [Streptococcus pneumoniae SPN994039]
 gi|429323486|emb|CCP31181.1| conserved hypothetical protein [Streptococcus pneumoniae SPN994038]
 gi|444249601|gb|ELU56089.1| S4 domain protein [Streptococcus pneumoniae PCS8203]
          Length = 261

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|256846326|ref|ZP_05551783.1| RNA binding protein [Fusobacterium sp. 3_1_36A2]
 gi|256718095|gb|EEU31651.1| RNA binding protein [Fusobacterium sp. 3_1_36A2]
          Length = 241

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 24/253 (9%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           +E++++ +++A +  +   V++S+   P     S +   K + +K   +G     E+  L
Sbjct: 5   LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57

Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE 193
           +V +PE  T D    P  V    I     F    H  +LG+IL  GI RE +GD+I++  
Sbjct: 58  AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILSLGIKREILGDLIVKNN 114

Query: 194 KGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVD 250
           +    +++  + D+L  +L ++ +  +    I     E + P+ + FK +    +SLR+D
Sbjct: 115 ECYG-IILENMFDFLKENLLRINSSPIEIIEIT----ERDVPQNE-FKELNIRLSSLRLD 168

Query: 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-T 309
           +L S    LSR+  VN I  G+V+VN+    +    +  GD + +   G+ +I E N  T
Sbjct: 169 SLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISVGDTIIIKKYGKFRIEEENGLT 228

Query: 310 RKGKFAVELIQYL 322
           +K K  + + +Y+
Sbjct: 229 KKDKVKLIVRKYI 241


>gi|417936982|ref|ZP_12580288.1| S4 domain protein [Streptococcus infantis X]
 gi|343399424|gb|EGV11946.1| S4 domain protein [Streptococcus infantis X]
          Length = 261

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 9/228 (3%)

Query: 93  SRREVLHSDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALT-SD 148
           S+ E  ++  L+P +    +  LE L +   +K  +   Y  +E  R+ +  P+  T S 
Sbjct: 25  SQVEEHYAPILSPFINPHQVFILETLGNNRGIKVFSSTSYISSEYARVILA-PDYFTPSL 83

Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELAD 206
            D  +  L I     FQ  +H   LG++L   GI R+  GDI++  EK AQ +V      
Sbjct: 84  EDFEMTLLEIVYPSKFQQLTHSKILGTVLNRLGIDRKLFGDILVTEEK-AQIIVDRRFTT 142

Query: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 266
                ++K+  + VS    P   +       +  + + +SLR+D   S+  KLSRS+   
Sbjct: 143 LFQDGIQKISELPVSLVERPFSDMIESKDDYQEKEVLVSSLRLDTFLSSILKLSRSQTSA 202

Query: 267 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 313
           L+    V+VN+  V K+   ++ GD++SV   GRI + + N  T+K K
Sbjct: 203 LVEKKLVQVNYHIVEKSDYPVKIGDLISVRRFGRIILLKENGQTKKDK 250


>gi|427439870|ref|ZP_18924434.1| cell division protein [Pediococcus lolii NGRI 0510Q]
 gi|425788002|dbj|GAC45222.1| cell division protein [Pediococcus lolii NGRI 0510Q]
          Length = 261

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 78  IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
           IEE   +++ A+     R +L ++FL P         + +  +++    GG+  AE  R 
Sbjct: 17  IEEFSALVQEAK--DQNRSIL-TNFLNPRQQHILTTLVNRDEELQLSFFGGFTNAENQR- 72

Query: 138 SVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 195
            + +P+    +    +V    I     F    H   LG++  +GI R+  GDI+   ++ 
Sbjct: 73  GLIYPQYFVPEKADFLVKIFEIDYPVKFAELEHRQILGTLANSGIQRDTFGDIVHYQDRW 132

Query: 196 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKT--IEASLRVDAL 252
            Q     EL  +    + ++G + V   R+ L A  E   P     +T    ASLR+D++
Sbjct: 133 -QVATNGELEKFFSNEITRIGRIKV---RMQLAAPSEILTPVNDWERTQVTLASLRLDSI 188

Query: 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRK 311
            +  F +SR +   LI +  V++NW    K+ T +   D++SV   GRIK+ E+   T+K
Sbjct: 189 VATAFSISRHRAKELIEHRQVQLNWMIDEKSDTIIARNDVISVRKYGRIKLVEVLGKTKK 248

Query: 312 GKFAVEL 318
            K   +L
Sbjct: 249 DKLKTQL 255


>gi|417923678|ref|ZP_12567135.1| S4 domain protein [Streptococcus mitis SK569]
 gi|342836560|gb|EGU70771.1| S4 domain protein [Streptococcus mitis SK569]
          Length = 261

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAQTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALTSD-PDIVAALS-ITGNFGFQPCSHGDFLGSILGT-GIARE 183
           G +  +E  R+ + +P+    +  D   +L  I  +  F+  +H   LG+++   GI R+
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEMSLQEIVYSNKFEHLTHAKILGTVINQLGIERK 120

Query: 184 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 243
             GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +     
Sbjct: 121 LFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDLC 179

Query: 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303
            +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR+++
Sbjct: 180 VSSFRLDVLLSNVLKLSRNQANQLIDKKLVQVNYHMVDKSDYTVQVGDLISVRKFGRLRL 239


>gi|383937851|ref|ZP_09991085.1| S4 domain protein [Streptococcus pseudopneumoniae SK674]
 gi|418972873|ref|ZP_13520928.1| S4 domain protein [Streptococcus pseudopneumoniae ATCC BAA-960]
 gi|383350949|gb|EID28787.1| S4 domain protein [Streptococcus pseudopneumoniae ATCC BAA-960]
 gi|383715197|gb|EID71169.1| S4 domain protein [Streptococcus pseudopneumoniae SK674]
          Length = 261

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEHLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFAEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|237650668|ref|ZP_04524920.1| YlmH protein [Streptococcus pneumoniae CCRI 1974]
 gi|237822427|ref|ZP_04598272.1| YlmH protein [Streptococcus pneumoniae CCRI 1974M2]
          Length = 261

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


>gi|116516882|ref|YP_816931.1| YlmH protein [Streptococcus pneumoniae D39]
 gi|149021244|ref|ZP_01835490.1| YlmH protein [Streptococcus pneumoniae SP23-BS72]
 gi|168493563|ref|ZP_02717706.1| YlmH protein [Streptococcus pneumoniae CDC3059-06]
 gi|225855092|ref|YP_002736604.1| YlmH protein [Streptococcus pneumoniae JJA]
 gi|225859417|ref|YP_002740927.1| YlmH protein [Streptococcus pneumoniae 70585]
 gi|410477034|ref|YP_006743793.1| hypothetical protein HMPREF1038_01645 [Streptococcus pneumoniae
           gamPNI0373]
 gi|418087338|ref|ZP_12724507.1| hypothetical protein SPAR87_1123 [Streptococcus pneumoniae GA47033]
 gi|418098981|ref|ZP_12736078.1| hypothetical protein SPAR122_1563 [Streptococcus pneumoniae
           6901-05]
 gi|418103351|ref|ZP_12740423.1| hypothetical protein SPAR143_1630 [Streptococcus pneumoniae NP070]
 gi|418117334|ref|ZP_12754303.1| hypothetical protein SPAR124_1549 [Streptococcus pneumoniae
           6963-05]
 gi|419433939|ref|ZP_13974057.1| hypothetical protein SPAR63_1303 [Streptococcus pneumoniae GA40183]
 gi|419456013|ref|ZP_13995970.1| hypothetical protein SPAR139_1710 [Streptococcus pneumoniae
           EU-NP04]
 gi|419465282|ref|ZP_14005173.1| hypothetical protein SPAR4_1653 [Streptococcus pneumoniae GA04175]
 gi|419469461|ref|ZP_14009329.1| hypothetical protein SPAR9_1535 [Streptococcus pneumoniae GA06083]
 gi|419475992|ref|ZP_14015828.1| hypothetical protein SPAR36_1595 [Streptococcus pneumoniae GA14688]
 gi|419487137|ref|ZP_14026899.1| hypothetical protein SPAR79_1650 [Streptococcus pneumoniae GA44128]
 gi|419508757|ref|ZP_14048408.1| hypothetical protein SPAR114_1649 [Streptococcus pneumoniae
           GA49542]
 gi|419521591|ref|ZP_14061186.1| S4 domain protein [Streptococcus pneumoniae GA05245]
 gi|421209429|ref|ZP_15666442.1| S4 domain protein [Streptococcus pneumoniae 2070005]
 gi|421234551|ref|ZP_15691169.1| S4 domain protein [Streptococcus pneumoniae 2061617]
 gi|421241124|ref|ZP_15697669.1| S4 domain protein [Streptococcus pneumoniae 2080913]
 gi|421249892|ref|ZP_15706349.1| S4 domain protein [Streptococcus pneumoniae 2082239]
 gi|421281648|ref|ZP_15732445.1| ylmH [Streptococcus pneumoniae GA04672]
 gi|421285761|ref|ZP_15736537.1| ylmH [Streptococcus pneumoniae GA60190]
 gi|421290222|ref|ZP_15740972.1| ylmH [Streptococcus pneumoniae GA54354]
 gi|421305614|ref|ZP_15756268.1| ylmH [Streptococcus pneumoniae GA62331]
 gi|421307856|ref|ZP_15758498.1| ylmH [Streptococcus pneumoniae GA60132]
 gi|421310062|ref|ZP_15760687.1| ylmH [Streptococcus pneumoniae GA62681]
 gi|444387027|ref|ZP_21185053.1| S4 domain protein [Streptococcus pneumoniae PCS125219]
 gi|444389236|ref|ZP_21187153.1| S4 domain protein [Streptococcus pneumoniae PCS70012]
 gi|444392997|ref|ZP_21190658.1| S4 domain protein [Streptococcus pneumoniae PCS81218]
 gi|444394520|ref|ZP_21192071.1| S4 domain protein [Streptococcus pneumoniae PNI0002]
 gi|444398114|ref|ZP_21195597.1| S4 domain protein [Streptococcus pneumoniae PNI0006]
 gi|444400395|ref|ZP_21197798.1| S4 domain protein [Streptococcus pneumoniae PNI0007]
 gi|444402899|ref|ZP_21200046.1| S4 domain protein [Streptococcus pneumoniae PNI0008]
 gi|444404359|ref|ZP_21201315.1| S4 domain protein [Streptococcus pneumoniae PNI0009]
 gi|444407733|ref|ZP_21204400.1| S4 domain protein [Streptococcus pneumoniae PNI0010]
 gi|444418358|ref|ZP_21214342.1| S4 domain protein [Streptococcus pneumoniae PNI0360]
 gi|444419887|ref|ZP_21215721.1| S4 domain protein [Streptococcus pneumoniae PNI0427]
 gi|116077458|gb|ABJ55178.1| YlmH protein [Streptococcus pneumoniae D39]
 gi|147930345|gb|EDK81329.1| YlmH protein [Streptococcus pneumoniae SP23-BS72]
 gi|183576486|gb|EDT97014.1| YlmH protein [Streptococcus pneumoniae CDC3059-06]
 gi|225720470|gb|ACO16324.1| YlmH protein [Streptococcus pneumoniae 70585]
 gi|225724266|gb|ACO20119.1| YlmH protein [Streptococcus pneumoniae JJA]
 gi|353758354|gb|EHD38946.1| hypothetical protein SPAR87_1123 [Streptococcus pneumoniae GA47033]
 gi|353768963|gb|EHD49485.1| hypothetical protein SPAR122_1563 [Streptococcus pneumoniae
           6901-05]
 gi|353774652|gb|EHD55139.1| hypothetical protein SPAR143_1630 [Streptococcus pneumoniae NP070]
 gi|353788015|gb|EHD68413.1| hypothetical protein SPAR124_1549 [Streptococcus pneumoniae
           6963-05]
 gi|379536882|gb|EHZ02068.1| hypothetical protein SPAR4_1653 [Streptococcus pneumoniae GA04175]
 gi|379538891|gb|EHZ04071.1| S4 domain protein [Streptococcus pneumoniae GA05245]
 gi|379544265|gb|EHZ09410.1| hypothetical protein SPAR9_1535 [Streptococcus pneumoniae GA06083]
 gi|379558774|gb|EHZ23806.1| hypothetical protein SPAR36_1595 [Streptococcus pneumoniae GA14688]
 gi|379576940|gb|EHZ41864.1| hypothetical protein SPAR63_1303 [Streptococcus pneumoniae GA40183]
 gi|379585506|gb|EHZ50362.1| hypothetical protein SPAR79_1650 [Streptococcus pneumoniae GA44128]
 gi|379610711|gb|EHZ75441.1| hypothetical protein SPAR114_1649 [Streptococcus pneumoniae
           GA49542]
 gi|379627989|gb|EHZ92595.1| hypothetical protein SPAR139_1710 [Streptococcus pneumoniae
           EU-NP04]
 gi|395573525|gb|EJG34115.1| S4 domain protein [Streptococcus pneumoniae 2070005]
 gi|395600405|gb|EJG60562.1| S4 domain protein [Streptococcus pneumoniae 2061617]
 gi|395607502|gb|EJG67599.1| S4 domain protein [Streptococcus pneumoniae 2080913]
 gi|395613586|gb|EJG73614.1| S4 domain protein [Streptococcus pneumoniae 2082239]
 gi|395880913|gb|EJG91964.1| ylmH [Streptococcus pneumoniae GA04672]
 gi|395885748|gb|EJG96769.1| ylmH [Streptococcus pneumoniae GA60190]
 gi|395887907|gb|EJG98921.1| ylmH [Streptococcus pneumoniae GA54354]
 gi|395904572|gb|EJH15486.1| ylmH [Streptococcus pneumoniae GA62331]
 gi|395907241|gb|EJH18135.1| ylmH [Streptococcus pneumoniae GA60132]
 gi|395909677|gb|EJH20552.1| ylmH [Streptococcus pneumoniae GA62681]
 gi|406369979|gb|AFS43669.1| hypothetical protein HMPREF1038_01645 [Streptococcus pneumoniae
           gamPNI0373]
 gi|444254237|gb|ELU60683.1| S4 domain protein [Streptococcus pneumoniae PCS125219]
 gi|444257836|gb|ELU64169.1| S4 domain protein [Streptococcus pneumoniae PCS70012]
 gi|444259762|gb|ELU66071.1| S4 domain protein [Streptococcus pneumoniae PNI0002]
 gi|444260771|gb|ELU67079.1| S4 domain protein [Streptococcus pneumoniae PNI0006]
 gi|444262584|gb|ELU68875.1| S4 domain protein [Streptococcus pneumoniae PCS81218]
 gi|444265660|gb|ELU71656.1| S4 domain protein [Streptococcus pneumoniae PNI0008]
 gi|444266452|gb|ELU72404.1| S4 domain protein [Streptococcus pneumoniae PNI0007]
 gi|444271329|gb|ELU77080.1| S4 domain protein [Streptococcus pneumoniae PNI0010]
 gi|444276992|gb|ELU82519.1| S4 domain protein [Streptococcus pneumoniae PNI0009]
 gi|444281705|gb|ELU87012.1| S4 domain protein [Streptococcus pneumoniae PNI0360]
 gi|444285992|gb|ELU91000.1| S4 domain protein [Streptococcus pneumoniae PNI0427]
          Length = 261

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 70  KGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---Q 126
           KG+    +IE+ +  L+       + E  ++ FLTP +       L+ LA    +A    
Sbjct: 3   KGIYQHFSIED-RPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSS 61

Query: 127 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAR 182
           G +  +E  R+ + +P+      SD +I     +  N  F+  +H   LG+++   GI R
Sbjct: 62  GEFVSSEYVRVLL-YPDYFQPEFSDFEISLQEIVYSN-KFEYLTHAKILGTVINQLGIER 119

Query: 183 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 242
           +  GDI++  E+ AQ ++  +        L+K+G + VS    P      +  + +    
Sbjct: 120 KLFGDILVDEER-AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDL 178

Query: 243 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302
             +S R+D L S   KLSR++   LI    V+VN+  V K+  T++ GD++SV   GR++
Sbjct: 179 SVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLR 238

Query: 303 I 303
           +
Sbjct: 239 L 239


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,972,488,335
Number of Sequences: 23463169
Number of extensions: 203730861
Number of successful extensions: 563830
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 561323
Number of HSP's gapped (non-prelim): 1271
length of query: 322
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 180
effective length of database: 9,027,425,369
effective search space: 1624936566420
effective search space used: 1624936566420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)