Query 020729
Match_columns 322
No_of_seqs 211 out of 1547
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fph_X YLMH; division protein, 100.0 1.6E-47 5.6E-52 336.1 10.8 159 68-230 2-163 (165)
2 2vqe_D 30S ribosomal protein S 98.9 1.3E-10 4.5E-15 105.2 0.3 88 195-301 66-154 (209)
3 1dm9_A Hypothetical 15.5 KD pr 98.9 4.8E-09 1.6E-13 88.5 9.2 62 244-306 6-68 (133)
4 2k6p_A Uncharacterized protein 98.8 6.2E-10 2.1E-14 87.5 1.8 63 247-310 1-65 (92)
5 1p9k_A ORF, hypothetical prote 98.7 2E-09 7E-14 82.6 -0.7 55 244-298 18-73 (79)
6 1c05_A Ribosomal protein S4 de 98.6 3E-08 1E-12 86.0 6.3 57 244-300 48-105 (159)
7 3bbn_D Ribosomal protein S4; s 98.6 1.5E-08 5.2E-13 91.2 2.5 59 244-302 86-145 (201)
8 3r8n_D 30S ribosomal protein S 98.6 7.2E-09 2.5E-13 93.6 0.4 58 244-301 92-150 (205)
9 2cqj_A BRMS2, U3 small nucleol 98.4 6E-08 2E-12 73.5 2.4 53 246-298 7-62 (71)
10 1ksk_A Ribosomal small subunit 98.4 1.1E-07 3.9E-12 86.2 4.3 53 245-297 2-54 (234)
11 3dh3_A Ribosomal large subunit 98.3 3.6E-07 1.2E-11 86.3 5.7 53 244-297 4-56 (290)
12 1vio_A Ribosomal small subunit 98.3 2.7E-07 9.2E-12 84.4 4.3 52 246-297 2-53 (243)
13 3hp7_A Hemolysin, putative; st 98.3 2.9E-07 9.8E-12 87.0 4.5 54 245-298 5-61 (291)
14 3j20_D 30S ribosomal protein S 98.3 1.5E-07 5E-12 83.4 2.3 56 246-301 102-160 (180)
15 2xzm_D Ribosomal protein S4 co 98.3 3.9E-07 1.3E-11 80.8 3.4 52 244-295 104-158 (181)
16 1v9f_A Ribosomal large subunit 98.2 2.6E-07 8.7E-12 88.1 0.0 56 243-298 13-69 (325)
17 3u5c_J 40S ribosomal protein S 97.8 5.5E-06 1.9E-10 74.2 1.1 52 246-297 106-160 (197)
18 3iz6_C 40S ribosomal protein S 97.2 1.8E-06 6.3E-11 77.2 -9.8 55 246-300 108-163 (195)
19 3kbg_A 30S ribosomal protein S 96.8 0.0016 5.6E-08 58.8 6.2 50 246-295 7-58 (213)
20 3j20_E 30S ribosomal protein S 96.8 0.0034 1.2E-07 57.8 8.0 54 244-297 40-95 (243)
21 2g0c_A ATP-dependent RNA helic 94.0 0.046 1.6E-06 40.5 3.8 50 164-214 11-61 (76)
22 2jan_A Tyrosyl-tRNA synthetase 93.6 0.068 2.3E-06 52.9 5.2 45 248-292 358-402 (432)
23 1h3f_A Tyrosyl-tRNA synthetase 93.4 0.18 6.2E-06 49.8 7.9 43 249-291 372-414 (432)
24 1jil_A Tyrrs, tyrosyl-tRNA syn 92.7 0.02 7E-07 56.4 0.0 47 247-293 353-400 (420)
25 2ts1_A Tyrosyl-tRNA synthetase 89.3 0.071 2.4E-06 52.6 0.0 45 249-293 355-399 (419)
26 3u5c_E RP5, S7, YS6, 40S ribos 88.7 0.37 1.3E-05 44.7 4.4 63 244-306 39-114 (261)
27 2ktl_A Tyrosyl-tRNA synthetase 87.6 0.37 1.3E-05 41.8 3.4 35 248-282 52-86 (164)
28 2xzm_W 40S ribosomal protein S 87.4 1.6 5.6E-05 40.3 7.9 62 245-306 40-116 (260)
29 3iz6_D 40S ribosomal protein S 86.8 0.37 1.3E-05 44.8 3.2 62 245-306 40-114 (265)
30 1fm0_D Molybdopterin convertin 74.0 4.2 0.00014 29.7 4.5 32 263-295 41-74 (81)
31 2q5w_D Molybdopterin convertin 71.8 3.4 0.00012 30.0 3.5 23 272-295 48-70 (77)
32 3rpf_C Molybdopterin convertin 67.2 3.5 0.00012 30.1 2.7 28 268-295 40-67 (74)
33 3po0_A Small archaeal modifier 66.8 4.7 0.00016 30.2 3.5 24 271-295 59-82 (89)
34 1ryj_A Unknown; beta/alpha pro 64.4 6 0.00021 28.6 3.5 42 246-296 23-64 (70)
35 1rws_A Hypothetical protein PF 61.7 2.8 9.5E-05 31.0 1.2 41 246-295 30-70 (77)
36 2hj1_A Hypothetical protein; s 60.4 3.2 0.00011 32.7 1.4 50 245-296 34-83 (97)
37 2cu3_A Unknown function protei 59.3 5.8 0.0002 28.1 2.6 44 245-296 12-58 (64)
38 1vjk_A Molybdopterin convertin 59.2 5.5 0.00019 30.6 2.6 23 272-295 69-91 (98)
39 2kl0_A Putative thiamin biosyn 58.2 4 0.00014 30.2 1.6 44 245-296 13-59 (73)
40 2k5p_A THis protein, thiamine- 58.0 4.5 0.00015 30.3 1.8 44 246-296 17-63 (78)
41 3hvz_A Uncharacterized protein 57.4 8 0.00027 29.0 3.2 23 273-296 44-66 (78)
42 3fm8_A Kinesin-like protein KI 56.0 11 0.00038 30.6 4.1 32 271-303 90-121 (124)
43 4ejq_A Kinesin-like protein KI 55.4 11 0.00038 31.5 4.1 33 271-304 110-142 (154)
44 1tyg_B YJBS; alpha beta barrel 55.2 8.8 0.0003 29.5 3.1 42 247-296 37-81 (87)
45 3gku_A Probable RNA-binding pr 52.7 26 0.00087 31.6 6.2 59 79-139 149-207 (225)
46 3dwg_C 9.5 kDa culture filtrat 52.5 8.6 0.00029 29.0 2.7 24 272-295 60-86 (93)
47 4egx_A Kinesin-like protein KI 51.5 14 0.00046 32.1 4.1 32 272-304 141-172 (184)
48 1f0z_A THis protein; ubiquitin 51.5 6.6 0.00023 27.9 1.8 25 272-296 33-60 (66)
49 2kmm_A Guanosine-3',5'-BIS(dip 51.2 11 0.00037 26.8 2.9 24 272-296 38-61 (73)
50 1wv3_A Similar to DNA segregat 48.0 14 0.00049 33.1 3.8 33 269-303 133-166 (238)
51 2g1e_A Hypothetical protein TA 47.6 9.9 0.00034 28.2 2.3 24 272-295 57-83 (90)
52 2l32_A Small archaeal modifier 40.4 9.7 0.00033 28.1 1.2 42 245-296 19-60 (74)
53 2l52_A Methanosarcina acetivor 38.5 13 0.00044 28.6 1.7 24 272-295 66-92 (99)
54 2o97_B NS1, HU-1, DNA-binding 36.3 8.3 0.00028 29.2 0.3 46 252-305 9-54 (90)
55 2qjl_A URM1, ubiquitin-related 36.2 22 0.00075 27.2 2.7 24 272-295 66-92 (99)
56 3uv0_A Mutator 2, isoform B; F 34.1 7.1 0.00024 31.1 -0.4 21 270-292 61-81 (102)
57 1wln_A Afadin; beta sandwich, 34.1 29 0.00099 27.4 3.2 35 269-304 78-112 (120)
58 2k9x_A Tburm1, uncharacterized 33.0 20 0.00068 28.6 2.0 23 273-295 70-95 (110)
59 1v8c_A MOAD related protein; r 30.2 28 0.00096 29.6 2.7 25 272-296 54-81 (168)
60 1i3z_A EWS/FLI1 activated tran 29.3 1.2E+02 0.0042 22.6 6.1 57 258-317 9-66 (103)
61 3gqs_A Adenylate cyclase-like 28.6 27 0.00092 26.9 2.1 32 271-304 69-100 (106)
62 2np2_A HBB; protein-DNA comple 28.3 29 0.001 27.1 2.3 44 255-306 25-68 (108)
63 2jqj_A DNA damage response pro 26.9 41 0.0014 27.6 3.0 36 269-304 85-120 (151)
64 3hx1_A SLR1951 protein; P74513 26.7 61 0.0021 26.0 4.0 27 271-299 82-108 (131)
65 3po8_A RV0020C protein, putati 26.5 36 0.0012 25.7 2.5 23 271-295 65-87 (100)
66 1wgk_A Riken cDNA 2900073H19 p 25.7 22 0.00076 28.4 1.1 24 272-295 75-101 (114)
67 3rhi_A DNA-binding protein HU; 25.5 22 0.00075 27.0 1.0 46 252-305 12-57 (93)
68 4h87_A Kanadaptin; FHA domain 24.9 55 0.0019 26.4 3.4 27 270-296 93-120 (130)
69 1d4t_A T cell signal transduct 23.4 1.3E+02 0.0045 22.6 5.2 57 258-317 10-67 (104)
70 1mul_A NS2, HU-2, DNA binding 22.8 26 0.00091 26.2 1.0 45 253-305 10-54 (90)
71 2pie_A E3 ubiquitin-protein li 21.8 66 0.0023 25.9 3.3 27 271-297 75-102 (138)
72 2xt9_B Putative signal transdu 21.4 59 0.002 25.3 2.9 31 270-303 72-102 (115)
73 1p71_A DNA-binding protein HU; 21.4 29 0.001 26.2 1.0 45 253-305 10-54 (94)
74 1g6g_A Protein kinase RAD53; b 21.3 1E+02 0.0034 24.4 4.3 30 269-298 77-107 (127)
75 3c4i_A DNA-binding protein HU 21.1 30 0.001 26.6 1.0 45 253-305 10-54 (99)
76 2ysx_A Signaling inositol poly 21.0 1.7E+02 0.0058 22.6 5.5 56 258-317 16-73 (119)
77 1r21_A Antigen KI-67; beta san 20.9 45 0.0015 26.4 2.1 32 271-304 75-106 (128)
78 1owf_B IHF-beta, integration H 20.8 31 0.0011 26.1 1.0 45 253-305 10-55 (94)
79 1ka6_A SH2 domain protein 1A; 20.5 1.2E+02 0.004 24.0 4.6 57 258-317 10-67 (128)
80 2l48_A N-acetylmuramoyl-L-alan 20.4 92 0.0031 23.9 3.6 35 163-201 27-61 (85)
No 1
>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.6e-47 Score=336.14 Aligned_cols=159 Identities=18% Similarity=0.296 Sum_probs=145.8
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHhcCCCeEEecCCChHHHHHHHHHhhccCCeEEEEcCCCcccceeEEEecCCCCCC-
Q 020729 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146 (322)
Q Consensus 68 ll~~~~~~~~~~~i~~l~d~~~~a~~~~~~~~TdFL~P~e~~~~~~~l~~~~~i~~~~~GGy~~AERkr~~i~~~~~~~- 146 (322)
+++|+. +++++++++++||+++|.++|.+.+|+||||+|+.++.+++++. ++++.++|||++|||+|++|+ |+|++
T Consensus 2 ~~~hf~-~~e~~~i~~~~d~~~~a~~~~~~~~T~FL~p~e~~i~~~i~~~~-~~~~~~~GGy~~AER~r~~i~-p~~~~~ 78 (165)
T 2fph_X 2 IYQHFS-IEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTY-GLACSSSGEFVSSEYVRVLLY-PDYFQP 78 (165)
T ss_dssp CCCCCC-GGGHHHHHHHHHHHHHHHHHTSCEECCCBCHHHHHHHHHHHHHT-TCEEEEGGGTSCCSSBCEEEE-CTTCCC
T ss_pred hhhhcC-hhhHHHHHHHHHHHHHHHHhCCEEECCCCCHHHHHHHHHHHhcc-CcEEEEeCCCcHHheeEEEEe-cccccC
Confidence 578887 45679999999999999999999999999999999999999876 799999999999999999995 55544
Q ss_pred CCcC-ceEEEEEecCCCCcCCCchhhHHHHHc-CCCCCCCcccEEEecCCeEEEEechhHHHHHHhccceeeceEEEEEE
Q 020729 147 SDPD-IVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTR 224 (322)
Q Consensus 147 ~~~~-~i~~l~i~~~~kF~~lsHrD~LGaLm~-LGI~RekiGDI~v~~~~~a~v~v~~ei~~fi~~nl~kVg~~~V~~~~ 224 (322)
+..+ |+++++|++|+||++++|||||||||| |||+|+++|||++.+ ++||++|+++|++||.+||+|||+++|++++
T Consensus 79 ~~~d~~i~~l~i~~~~kF~~l~Hrd~LGaLm~~LGI~Re~iGDI~v~~-~~~qv~v~~~i~~~i~~nl~kIg~~~V~~~~ 157 (165)
T 2fph_X 79 EFSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERKLFGDILVDE-ERAQIMINQQFLLLFQDGLKKIGRIPVSLEE 157 (165)
T ss_dssp CGGGGCEEEEEEESCCCCHHHHHHHHHSCSSSCCCCCGGGEEEEECSS-SCCEEEEEGGGHHHHHHHCCEETTEECEEEE
T ss_pred cccCCceEEEEEecccccccCCHHHHHHHHHHhcCCCHhhcCCEEEEC-CEEEEEEcHHHHHHHHHHHhhccCeeEEEEE
Confidence 3334 899999999999999999999999999 999999999999966 4899999999999999999999999999999
Q ss_pred ecCccc
Q 020729 225 IPLLAL 230 (322)
Q Consensus 225 i~~~~l 230 (322)
++++++
T Consensus 158 i~~~~l 163 (165)
T 2fph_X 158 RPFTEK 163 (165)
T ss_dssp CCGGGC
T ss_pred eCHHHc
Confidence 998776
No 2
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.92 E-value=1.3e-10 Score=105.22 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=75.3
Q ss_pred eEEEEechhHHHHHHhccceeeceEEEEEEecCccccCCCCCceeEeecccccHHHHHHHhC-CCcCHHHHHHHHHCCcE
Q 020729 195 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG-FKLSRSKLVNLISNGDV 273 (322)
Q Consensus 195 ~a~v~v~~ei~~fi~~nl~kVg~~~V~~~~i~~~~l~~~~~~~k~~~~~vaS~RLD~~Ls~~-~~~SRs~a~~lI~~G~V 273 (322)
..|.++.+++.+|+..+..++|++++.+ .....+|||.+|+.. +..||+.|+++|.+|+|
T Consensus 66 ~~Yg~~e~q~~~y~~~a~~~~g~t~~~l-------------------~~~le~RLD~~L~~~g~~~SR~~arqLI~~G~V 126 (209)
T 2vqe_D 66 RIYGISERQFRNLFEEASKKKGVTGSVF-------------------LGLLESRLDNVVYRLGFAVSRRQARQLVRHGHI 126 (209)
T ss_dssp HHHTCCHHHHHHHHHHHHHSSSCHHHHH-------------------HHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCE
T ss_pred HHhCccHHHHHHHHHHHHHccCCcchHH-------------------HHhHHHHHHHHHHHhcCcCCHHHHHHHHHCCCE
Confidence 4566888999999999999999887643 123358999999754 58899999999999999
Q ss_pred EECCEEecCCCcccCCCCEEEEeecCeE
Q 020729 274 RVNWTTVTKNGTTLRTGDIVSVSGKGRI 301 (322)
Q Consensus 274 ~VNg~~v~~~s~~Vk~GD~IsVrg~GR~ 301 (322)
.|||+.++++++.|++||+|+|++.++.
T Consensus 127 ~VNG~~v~~ps~~V~~gD~I~V~~~~r~ 154 (209)
T 2vqe_D 127 TVNGRRVDLPSYRVRPGDEIAVAEKSRN 154 (209)
T ss_dssp EETTEECCCTTCBCCTTCEEEECGGGTT
T ss_pred EECCEEeCcCCcCcCCCCEEEEcCcccc
Confidence 9999999889999999999999987653
No 3
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.90 E-value=4.8e-09 Score=88.54 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred ccccHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEe
Q 020729 244 EASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306 (322)
Q Consensus 244 vaS~RLD~~Ls~~-~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei 306 (322)
.+++|||.||+.. +..||+.++.+|++|+|.|||+.+ ++++.|++||.|+|...+.....++
T Consensus 6 ~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~~v 68 (133)
T 1dm9_A 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIV 68 (133)
T ss_dssp TTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEEEE
T ss_pred ccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeEEE
Confidence 4689999999876 568999999999999999999998 8999999999999999988777666
No 4
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.85 E-value=6.2e-10 Score=87.52 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=56.1
Q ss_pred cHHHHHHHhCC-CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEe-eccc
Q 020729 247 LRVDALASAGF-KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 310 (322)
Q Consensus 247 ~RLD~~Ls~~~-~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei-~~TK 310 (322)
+|||.+|+... ..||+.++++|++|.|+|||+++ ++++.|++||.|+|...++....++ +.||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~ 65 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPA 65 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCC
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEecccc
Confidence 69999998754 45999999999999999999998 8999999999999999998887777 5676
No 5
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.66 E-value=2e-09 Score=82.57 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=47.9
Q ss_pred ccccHHHHHHHhCC-CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeec
Q 020729 244 EASLRVDALASAGF-KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298 (322)
Q Consensus 244 vaS~RLD~~Ls~~~-~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~ 298 (322)
...+|||.+|+... ..||+.++.+|++|.|+|||+.++++++.|.+||.|+|.|.
T Consensus 18 ~~~~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~ 73 (79)
T 1p9k_A 18 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79)
T ss_dssp CSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred CCCchHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECCE
Confidence 45699999998753 34999999999999999999999899999999999888543
No 6
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.65 E-value=3e-08 Score=85.99 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=51.1
Q ss_pred ccccHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCe
Q 020729 244 EASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300 (322)
Q Consensus 244 vaS~RLD~~Ls~~-~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR 300 (322)
.-.+|||.+|... +..||+.|+++|.+|.|.|||+.++++++.|++||.|+|++..+
T Consensus 48 ~le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~ 105 (159)
T 1c05_A 48 LLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSR 105 (159)
T ss_dssp HHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGS
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCcee
Confidence 3468999999865 47899999999999999999999988999999999999987653
No 7
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.58 E-value=1.5e-08 Score=91.23 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=52.7
Q ss_pred ccccHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEE
Q 020729 244 EASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 302 (322)
Q Consensus 244 vaS~RLD~~Ls~~-~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~ 302 (322)
.-.+|||.+|... +..||+.|+++|.+|+|.|||+.+++|++.|++||+|+|++.++..
T Consensus 86 ~Le~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~r~~ 145 (201)
T 3bbn_D 86 LLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSI 145 (201)
T ss_dssp HHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSC
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccccchH
Confidence 3468999999654 4789999999999999999999999999999999999999988753
No 8
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.58 E-value=7.2e-09 Score=93.56 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=53.0
Q ss_pred ccccHHHHHHHh-CCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeE
Q 020729 244 EASLRVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301 (322)
Q Consensus 244 vaS~RLD~~Ls~-~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~ 301 (322)
...+|||.+|+. .+..||+.|+++|.+|+|.|||+++++|++.|++||+|+|++.++-
T Consensus 92 lle~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~~~ 150 (205)
T 3r8n_D 92 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 150 (205)
T ss_dssp HHHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSSSCS
T ss_pred hhHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCchhh
Confidence 457999999986 4688999999999999999999999899999999999999998764
No 9
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6e-08 Score=73.46 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=46.0
Q ss_pred ccHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCC--CCEEEEeec
Q 020729 246 SLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT--GDIVSVSGK 298 (322)
Q Consensus 246 S~RLD~~Ls~~-~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~--GD~IsVrg~ 298 (322)
.+|||.+|... +.-||++|+++|.+|+|+|||+.+++|++.|.+ +|.|++...
T Consensus 7 ~~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~ 62 (71)
T 2cqj_A 7 GRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDS 62 (71)
T ss_dssp EEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCC
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEECC
Confidence 36999997655 567999999999999999999999999999998 788886443
No 10
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=98.43 E-value=1.1e-07 Score=86.25 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=49.1
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg 297 (322)
+++|||.||+.....||+.++++|++|+|+|||+.++++++.|++||.|++.+
T Consensus 2 ~~~RLd~~L~~~~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 54 (234)
T 1ksk_A 2 SHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG 54 (234)
T ss_dssp CCEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT
T ss_pred CcccHHHHHHHcCCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC
Confidence 47899999988778999999999999999999999977999999999999974
No 11
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.35 E-value=3.6e-07 Score=86.31 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.7
Q ss_pred ccccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 020729 244 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297 (322)
Q Consensus 244 vaS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg 297 (322)
.+++|||.||+.....||+.++++|++|+|+|||+++ ++++.|++||.|+|.+
T Consensus 4 ~~g~RLdk~La~~g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~ 56 (290)
T 3dh3_A 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNG 56 (290)
T ss_dssp CCCEEHHHHHHTTTSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETT
T ss_pred ccchHHHHHHHhCCCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEecc
Confidence 4689999999998788999999999999999999999 8999999999999976
No 12
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=98.33 E-value=2.7e-07 Score=84.40 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=48.1
Q ss_pred ccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 020729 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297 (322)
Q Consensus 246 S~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg 297 (322)
++|||.||+.....||+.++++|++|+|+|||++++++++.|++||.|.+.+
T Consensus 2 ~~RLd~~L~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 53 (243)
T 1vio_A 2 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 53 (243)
T ss_dssp CEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred CccHHHHHHHcCCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec
Confidence 6899999988778999999999999999999999977999999999998864
No 13
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.33 E-value=2.9e-07 Score=87.01 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=48.7
Q ss_pred cccHHHHHHHhC-CCcCHHHHHHHHHCCcEEECC-E-EecCCCcccCCCCEEEEeec
Q 020729 245 ASLRVDALASAG-FKLSRSKLVNLISNGDVRVNW-T-TVTKNGTTLRTGDIVSVSGK 298 (322)
Q Consensus 245 aS~RLD~~Ls~~-~~~SRs~a~~lI~~G~V~VNg-~-~v~~~s~~Vk~GD~IsVrg~ 298 (322)
..+|||.+|+.. +..||++|+++|++|+|+||| + +++++++.|++||.|+|+|.
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~ 61 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGE 61 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEccc
Confidence 358999999765 578999999999999999999 8 78899999999999999874
No 14
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.33 E-value=1.5e-07 Score=83.44 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=50.2
Q ss_pred ccHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCC--CEEEEeecCeE
Q 020729 246 SLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DIVSVSGKGRI 301 (322)
Q Consensus 246 S~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~G--D~IsVrg~GR~ 301 (322)
.+|||.+| ..++.-||+.|+++|.+|+|+|||+++++|++.|.+| |.|++.+.-.+
T Consensus 102 e~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s~i 160 (180)
T 3j20_D 102 ERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160 (180)
T ss_dssp HTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSCSSS
T ss_pred hhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCCCcc
Confidence 57999998 5667889999999999999999999999999999999 99999765443
No 15
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=98.26 E-value=3.9e-07 Score=80.78 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=45.9
Q ss_pred ccccHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC--EEEE
Q 020729 244 EASLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD--IVSV 295 (322)
Q Consensus 244 vaS~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD--~IsV 295 (322)
.-+||||.+| ..++..||+.|+++|.+|+|.|||+.+++|++.|.+|| .|++
T Consensus 104 ~le~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v 158 (181)
T 2xzm_D 104 LMERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDF 158 (181)
T ss_dssp HHTTBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEEC
T ss_pred hhccchhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEE
Confidence 3468999998 55568899999999999999999999999999999997 5555
No 16
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=98.16 E-value=2.6e-07 Score=88.05 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred cccccHHHHHHHhCC-CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeec
Q 020729 243 IEASLRVDALASAGF-KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298 (322)
Q Consensus 243 ~vaS~RLD~~Ls~~~-~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~ 298 (322)
..+++|||.+|+..+ ..||+.++++|++|+|+|||+.+.++++.|++||.|+|.+.
T Consensus 13 ~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 69 (325)
T 1v9f_A 13 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 69 (325)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEecc
Confidence 346899999999887 89999999999999999999986699999999999999754
No 17
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.75 E-value=5.5e-06 Score=74.22 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=45.6
Q ss_pred ccHHHHHHH-hCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCC--CEEEEee
Q 020729 246 SLRVDALAS-AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DIVSVSG 297 (322)
Q Consensus 246 S~RLD~~Ls-~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~G--D~IsVrg 297 (322)
-+|||.+|. .+|.-||+.|+++|.+|+|.|||+.+++|++.|.+| |.|++..
T Consensus 106 e~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~ 160 (197)
T 3u5c_J 106 ERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAP 160 (197)
T ss_dssp TTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCS
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcC
Confidence 479999975 556779999999999999999999999999999999 5677754
No 18
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.17 E-value=1.8e-06 Score=77.21 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=48.0
Q ss_pred ccHHHHHHHh-CCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCe
Q 020729 246 SLRVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 300 (322)
Q Consensus 246 S~RLD~~Ls~-~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR 300 (322)
.+|||.+|.. +|.-||+.|+++|.+|+|.|||+.+++|++.|++||.+.|...+.
T Consensus 108 e~RLD~~L~r~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~~~ 163 (195)
T 3iz6_C 108 ARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLT 163 (195)
T ss_dssp TSCCCSSCCCCCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSSSC
T ss_pred HhhhhHHHHhccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEecCC
Confidence 4689999754 456699999999999999999999999999999999988875544
No 19
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.82 E-value=0.0016 Score=58.79 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=44.0
Q ss_pred ccHHHHHHHhC--CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 020729 246 SLRVDALASAG--FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 246 S~RLD~~Ls~~--~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
|+-|--+|... +-.++++|++++.+|.|+|||++.+++++.+..+|+|+|
T Consensus 7 slPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 7 SVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred ceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 45566677654 467889999999999999999999999999999999999
No 20
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.77 E-value=0.0034 Score=57.81 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=48.5
Q ss_pred ccccHHHHHHHhCC--CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 020729 244 EASLRVDALASAGF--KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297 (322)
Q Consensus 244 vaS~RLD~~Ls~~~--~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg 297 (322)
..|+-|--+|...+ -.++++|++++.+|.|+|||++++++++.+..+|+|+|..
T Consensus 40 ~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k 95 (243)
T 3j20_E 40 RTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE 95 (243)
T ss_dssp TTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT
T ss_pred ccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc
Confidence 34677888998765 6778999999999999999999999999999999999975
No 21
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=94.03 E-value=0.046 Score=40.53 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=42.2
Q ss_pred cCCCchhhHHHHHc-CCCCCCCcccEEEecCCeEEEEechhHHHHHHhccce
Q 020729 164 QPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 214 (322)
Q Consensus 164 ~~lsHrD~LGaLm~-LGI~RekiGDI~v~~~~~a~v~v~~ei~~fi~~nl~k 214 (322)
+.+..+|++|+|.+ .||.++.||+|-+.+ +..+|-+..++++-+...|..
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-~~s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD-NASYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS-SCEEEEECTTCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC-CcEEEEECHHHHHHHHHHhcc
Confidence 56789999999998 899999999998865 589999999999999988875
No 22
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=93.57 E-value=0.068 Score=52.92 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCE
Q 020729 248 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 292 (322)
Q Consensus 248 RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~ 292 (322)
=+|.++..++--|++.++++|++|-|+|||+.+++++..+.++|.
T Consensus 358 ~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 402 (432)
T 2jan_A 358 IVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDF 402 (432)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGS
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhc
Confidence 466667788899999999999999999999999999999987653
No 23
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.36 E-value=0.18 Score=49.83 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=37.7
Q ss_pred HHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC
Q 020729 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD 291 (322)
Q Consensus 249 LD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD 291 (322)
+|.+...++--|++.++++|++|-|+|||..+++++..+..++
T Consensus 372 ~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 372 ARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred HHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 4555667789999999999999999999999999999998765
No 24
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=92.72 E-value=0.02 Score=56.39 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred cHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEE
Q 020729 247 LRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293 (322)
Q Consensus 247 ~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~I 293 (322)
..|..+| ..++--|+++|+++|++|.|+|||+.+++++..+.+||.+
T Consensus 353 i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 353 TNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp ------------------------------------------------
T ss_pred ccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4566665 4556789999999999999999999999999999999875
No 25
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=89.27 E-value=0.071 Score=52.57 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEE
Q 020729 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293 (322)
Q Consensus 249 LD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~I 293 (322)
+|.++..++--|++.++++|++|-|+|||+.+++++..+.++|.+
T Consensus 355 ~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~ 399 (419)
T 2ts1_A 355 VELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhcc
Confidence 444556667889999999999999999999999999999888764
No 26
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=88.74 E-value=0.37 Score=44.68 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=52.6
Q ss_pred ccccHHHHHHHhCC--CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee-----------cCeEEEEEe
Q 020729 244 EASLRVDALASAGF--KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG-----------KGRIKIGEI 306 (322)
Q Consensus 244 vaS~RLD~~Ls~~~--~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg-----------~GR~~i~ei 306 (322)
..|+-|--+|...+ -.+.++++..+.+|.|+|||++.++..+.+--=|+|||.. +|||.+..|
T Consensus 39 ~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I 114 (261)
T 3u5c_E 39 RESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRI 114 (261)
T ss_dssp GGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTTTEEEECCBCSSSCBCCEEC
T ss_pred hhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCCCCEEEEEECCCCcEEEEEC
Confidence 34677888898776 4567899999999999999999999999988889999954 677777666
No 27
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=87.59 E-value=0.37 Score=41.79 Aligned_cols=35 Identities=29% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecC
Q 020729 248 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTK 282 (322)
Q Consensus 248 RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~ 282 (322)
=+|.++..++--|++.++++|.+|-|+||+..+.+
T Consensus 52 ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~~ 86 (164)
T 2ktl_A 52 FSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGVK 86 (164)
T ss_dssp HHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSCC
T ss_pred HHHHHHHhCcccCHHHHHHHHHhCCEEECCEeccc
Confidence 46777888899999999999999999999977633
No 28
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=87.43 E-value=1.6 Score=40.31 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=51.6
Q ss_pred cccHHHHHHHhCC--CcCHHHHHHHHHC--CcEEECCEEecCCCcccCCCCEEEEee-----------cCeEEEEEe
Q 020729 245 ASLRVDALASAGF--KLSRSKLVNLISN--GDVRVNWTTVTKNGTTLRTGDIVSVSG-----------KGRIKIGEI 306 (322)
Q Consensus 245 aS~RLD~~Ls~~~--~~SRs~a~~lI~~--G~V~VNg~~v~~~s~~Vk~GD~IsVrg-----------~GR~~i~ei 306 (322)
.|+-|--+|...+ -.+.++++..+.+ |.|+|||++.++..+.+--=|+|+|.. +|||.+..|
T Consensus 40 eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I 116 (260)
T 2xzm_W 40 ESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSL 116 (260)
T ss_dssp SCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEEC
T ss_pred eeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEc
Confidence 4566888888776 4788999999999 999999999988888888889999963 567776665
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=86.84 E-value=0.37 Score=44.78 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=48.5
Q ss_pred cccHHHHHHHhCC--CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee-----------cCeEEEEEe
Q 020729 245 ASLRVDALASAGF--KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG-----------KGRIKIGEI 306 (322)
Q Consensus 245 aS~RLD~~Ls~~~--~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg-----------~GR~~i~ei 306 (322)
.|+-|--+|...+ -.+.++++..+.+|.|+|||++.++..+.+--=|+|||.. +|||.+..|
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I 114 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSV 114 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEE
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEEC
Confidence 3556777777654 5667899999999999999999988888887779999954 577777666
No 30
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=73.96 E-value=4.2 Score=29.70 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=25.2
Q ss_pred HHHHHHHCC--cEEECCEEecCCCcccCCCCEEEE
Q 020729 263 KLVNLISNG--DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 263 ~a~~lI~~G--~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
..++.+..+ .|.||++.+ ..+..|++||.|.+
T Consensus 41 ~~~~~l~~~~~~v~vN~~~v-~~~~~l~~gD~V~i 74 (81)
T 1fm0_D 41 RWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAF 74 (81)
T ss_dssp HHHHHHCCTTCEEEETTEEC-CTTCBCCTTCEEEE
T ss_pred hHHHHhcCCCEEEEECCEEC-CCCCCCCCCCEEEE
Confidence 445555544 499999998 68999999999987
No 31
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.81 E-value=3.4 Score=30.01 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.|.|||+.+ ..+..|++||.|.|
T Consensus 48 ~v~vNg~~v-~~~~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFV-QKSDFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEE-CTTSEECTTCEEEE
T ss_pred EEEECCEEC-CCCCCcCCCCEEEE
Confidence 699999998 56899999999987
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=67.24 E-value=3.5 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.0
Q ss_pred HHCCcEEECCEEecCCCcccCCCCEEEE
Q 020729 268 ISNGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 268 I~~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
+..-.|.||++.+...++.|++||.|.+
T Consensus 40 l~~~~vavN~~~v~~~~~~l~~gDeV~i 67 (74)
T 3rpf_C 40 LGVCAIALNDHLIDNLNTPLKDGDVISL 67 (74)
T ss_dssp TTTCEEEESSSEECCTTCCCCTTCEEEE
T ss_pred hhccEEEECCEEcCCCCcCCCCCCEEEE
Confidence 4567899999996678999999999987
No 33
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=66.82 E-value=4.7 Score=30.16 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.3
Q ss_pred CcEEECCEEecCCCcccCCCCEEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
-.|.||++.+ ..++.|++||.|.+
T Consensus 59 ~~v~VN~~~v-~~~~~l~~gDeV~i 82 (89)
T 3po0_A 59 INVLRNGEAA-ALGEATAAGDELAL 82 (89)
T ss_dssp SEEEETTEEC-CTTSBCCTTCEEEE
T ss_pred EEEEECCEEC-CCCcccCCCCEEEE
Confidence 3699999998 57999999999987
No 34
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=64.41 E-value=6 Score=28.62 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=29.9
Q ss_pred ccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 020729 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296 (322)
Q Consensus 246 S~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVr 296 (322)
+..+..++... ++.. ..=.|.||++.+ ..+..|++||.|.+-
T Consensus 23 ~~tv~~Ll~~l-~~~~-------~~v~vavN~~~v-~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 23 PRRIKDVLGEL-EIPI-------ETVVVKKNGQIV-IDEEEIFDGDIIEVI 64 (70)
T ss_dssp CCBHHHHHHHT-TCCT-------TTEEEEETTEEC-CTTSBCCTTCEEEEE
T ss_pred CCcHHHHHHHh-CCCC-------CCEEEEECCEEC-CCcccCCCCCEEEEE
Confidence 35677887764 3331 111489999998 567899999999874
No 35
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=61.71 E-value=2.8 Score=31.03 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=29.5
Q ss_pred ccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 020729 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 246 S~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
+..+..++... ++. ...=.|.||++.+ ..+..|++||.|.|
T Consensus 30 ~~Tv~dLl~~L-~~~-------~~~v~VavNg~~v-~~~~~L~dGD~V~i 70 (77)
T 1rws_A 30 GMKVRDILRAV-GFN-------TESAIAKVNGKVV-LEDDEVKDGDFVEV 70 (77)
T ss_dssp SCCHHHHHHTT-TCS-------SCSSCEEETTEEE-CSSSCCCSSCCCBC
T ss_pred CCcHHHHHHHh-CCC-------CcCEEEEECCEEC-CCCCCcCCCCEEEE
Confidence 45677777763 332 1122599999999 57899999998876
No 36
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=60.37 E-value=3.2 Score=32.71 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=31.8
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVr 296 (322)
++..+...+.+ .++....-.=-+....|-|||+.+ ..++.|++||.|.|-
T Consensus 34 ~g~TV~daI~~-~gi~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 34 EGITVQTAITQ-SGILSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIY 83 (97)
T ss_dssp TTCBHHHHHHH-HTHHHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEEC
T ss_pred CCCcHHHHHHH-cCCCccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEE
Confidence 45667666655 233211000001246799999998 699999999999873
No 37
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=59.29 E-value=5.8 Score=28.10 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=28.9
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecC---CCcccCCCCEEEEe
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTK---NGTTLRTGDIVSVS 296 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~---~s~~Vk~GD~IsVr 296 (322)
.+..+..++... ++.+ ..=.|.||++.+.. .++.|++||.|.|-
T Consensus 12 ~~~tv~~ll~~l-~~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 12 EGKTLKEVLEEM-GVEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTCCHHHHHHHH-TBCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred CCCcHHHHHHHc-CCCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 345566666653 3332 11248999999843 24899999999873
No 38
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=59.20 E-value=5.5 Score=30.62 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.7
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.|.||++.+ ..++.|++||.|.|
T Consensus 69 ~v~VNg~~v-~~~~~L~dGDeV~i 91 (98)
T 1vjk_A 69 NIAVNGRYV-SWDEELKDGDVVGV 91 (98)
T ss_dssp EEEETTBCC-CTTCBCCTTCEEEE
T ss_pred EEEECCEEC-CCCCCCCCCCEEEE
Confidence 599999998 57999999999987
No 39
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=58.15 E-value=4 Score=30.16 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=30.9
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEEe
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSVS 296 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~---s~~Vk~GD~IsVr 296 (322)
.+..|..+|.. +++.. +.=.|.|||+.+.+. ++.|++||.|.|-
T Consensus 13 ~~~Tl~~LL~~-l~~~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 13 QSASVAALMTE-LDCTG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CCSBHHHHHHH-TTCCS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred CCCcHHHHHHH-cCCCC-------CcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 45678888877 34431 112589999998443 5799999999883
No 40
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=58.01 E-value=4.5 Score=30.32 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=29.9
Q ss_pred ccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEEe
Q 020729 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSVS 296 (322)
Q Consensus 246 S~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~---s~~Vk~GD~IsVr 296 (322)
+..|..+|.. +++.. -+.=.|.|||+.+.+. ++.|++||.|.|-
T Consensus 17 ~~Tl~~LL~~-l~~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 17 SLNVTELLSA-LKVAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEHHHHHHH-HTCSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred CCcHHHHHHH-cCCCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 4668888776 34331 1122599999999544 3789999999883
No 41
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=57.43 E-value=8 Score=29.03 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEECCEEecCCCcccCCCCEEEEe
Q 020729 273 VRVNWTTVTKNGTTLRTGDIVSVS 296 (322)
Q Consensus 273 V~VNg~~v~~~s~~Vk~GD~IsVr 296 (322)
.+|||+.+ ..++.++.||.|.|-
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVL 66 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEE
T ss_pred EEECCEEc-CCCcccCCCCEEEEE
Confidence 68899998 789999999998873
No 42
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=55.99 E-value=11 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=24.4
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeecCeEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i 303 (322)
..+.|||++++ ....|+.||+|.+-..--|++
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~lG~~~~FrF 121 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILWGNNHFFRL 121 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEETTTEEEEE
T ss_pred CCEEECCEEcC-CcEECCCCCEEEECCCeEEEE
Confidence 36999999994 468999999998754444544
No 43
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=55.39 E-value=11 Score=31.48 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=25.4
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
..++|||+.+ .....|+.||+|.+=..-.|++.
T Consensus 110 ngt~VNG~~i-~~~~~L~~GD~I~~G~~~~Frf~ 142 (154)
T 4ejq_A 110 ADTYVNGKKV-TEPSILRSGNRIIMGKSHVFRFN 142 (154)
T ss_dssp CCEEETTEEC-CSCEECCTTCEEEETTTEEEEEE
T ss_pred CceEECCEEc-CCceECCCCCEEEECCcEEEEEc
Confidence 4699999999 44678999999988444456664
No 44
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=55.25 E-value=8.8 Score=29.45 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=28.8
Q ss_pred cHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEEe
Q 020729 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSVS 296 (322)
Q Consensus 247 ~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~---s~~Vk~GD~IsVr 296 (322)
..+..+|... ++.. ..=.|.||++.+... ++.|++||.|.|-
T Consensus 37 ~Tv~dLL~~L-~~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 37 GTIQDLLASY-QLEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp CBHHHHHHHT-TCTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CcHHHHHHHh-CCCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 5677777763 3331 122489999998432 5789999999873
No 45
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=52.67 E-value=26 Score=31.57 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCChHHHHHHHHHhhccCCeEEEEcCCCcccceeEEEe
Q 020729 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139 (322)
Q Consensus 79 ~~i~~l~d~~~~a~~~~~~~~TdFL~P~e~~~~~~~l~~~~~i~~~~~GGy~~AERkr~~i 139 (322)
.+..-....|++|.+++.++.-+=++|+|+.++...+++.+++...+.|- +..|+.++.
T Consensus 149 ~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGe--ep~R~VVI~ 207 (225)
T 3gku_A 149 TLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRSDGE--EPFRHVIIS 207 (225)
T ss_dssp HHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEEESS--TTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEEeec--CCCeEEEEE
Confidence 34455566778888999999999999999999999999888998877663 445644443
No 46
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=52.47 E-value=8.6 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.5
Q ss_pred cEEECCEEecC---CCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTK---NGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~---~s~~Vk~GD~IsV 295 (322)
.|.||++.+.. .++.|++||.|.+
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 58999999853 5789999999987
No 47
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=51.55 E-value=14 Score=32.08 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=25.7
Q ss_pred cEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
.++|||..++ ....|+.||.|.+=..--|+|.
T Consensus 141 ~t~VNG~~I~-~~~~L~~GDrI~lG~~h~Frfn 172 (184)
T 4egx_A 141 DTYVNGKKVT-EPSILRSGNRIIMGKSHVFRFN 172 (184)
T ss_dssp CEEETTEECC-SCEECCTTCEEEETTTEEEEEE
T ss_pred eEEEcCEEcc-ccEEcCCCCEEEECCCCEEEEC
Confidence 5999999995 4578999999987655567774
No 48
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=51.47 E-value=6.6 Score=27.92 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=20.0
Q ss_pred cEEECCEEecCC---CcccCCCCEEEEe
Q 020729 272 DVRVNWTTVTKN---GTTLRTGDIVSVS 296 (322)
Q Consensus 272 ~V~VNg~~v~~~---s~~Vk~GD~IsVr 296 (322)
.|.||++.+... ++.|++||.|.|-
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 489999998432 6899999999873
No 49
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=51.17 E-value=11 Score=26.77 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=19.8
Q ss_pred cEEECCEEecCCCcccCCCCEEEEe
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSVS 296 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsVr 296 (322)
.+.|||+.+ ..++.|+.||.|.+-
T Consensus 38 aa~vNg~lv-dl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 38 GAKVNHKLV-PLSYVLNSGDQVEVL 61 (73)
T ss_dssp EEEETTEEC-CTTCBCCSSSBEEEE
T ss_pred EEEECCEEe-CCCcCcCCCCEEEEE
Confidence 368899998 789999999987763
No 50
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=47.97 E-value=14 Score=33.09 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=25.3
Q ss_pred HCCcEEECCEEecCCCcccC-CCCEEEEeecCeEEE
Q 020729 269 SNGDVRVNWTTVTKNGTTLR-TGDIVSVSGKGRIKI 303 (322)
Q Consensus 269 ~~G~V~VNg~~v~~~s~~Vk-~GD~IsVrg~GR~~i 303 (322)
.+|.|.|||+.++ ....++ +||.|.| |.=.|++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~i-g~~~~~~ 166 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYV-EGIWLEV 166 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEE-TTEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEE-CCEEEEE
Confidence 3778999999984 456899 9999999 4444444
No 51
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=47.56 E-value=9.9 Score=28.16 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.6
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVT---KNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~---~~s~~Vk~GD~IsV 295 (322)
.|.||++.+. ..++.|++||.|.+
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 5999999885 36889999999987
No 52
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=40.36 E-value=9.7 Score=28.13 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=31.2
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVr 296 (322)
.+.++..+|.. ++++.+.+ -|.+||+.+ .++..++ ||.|.|-
T Consensus 19 ~g~Tv~dLL~~-Lgl~~~~V-------vV~vNG~~v-~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 19 DDGTYADLVRA-VDLSPHEV-------TVLVDGRPV-PEDQSVE-VDRVKVL 60 (74)
T ss_dssp TTCSHHHHHHT-TCCCSSCC-------CEECCCCCC-CTTSSSC-CCCEEEC
T ss_pred CCCcHHHHHHH-cCCCcceE-------EEEECCEEC-CHHHCCC-CCEEEEE
Confidence 45678888887 56655432 499999998 6777665 9999884
No 53
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=38.49 E-value=13 Score=28.65 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.7
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVT---KNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~---~~s~~Vk~GD~IsV 295 (322)
.|.||++.+. ..++.|++||.|.|
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEE
Confidence 6999999874 56889999999987
No 54
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=36.29 E-value=8.3 Score=29.19 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=33.7
Q ss_pred HHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 252 ~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
.++...++|+..+...+.. ........|..|+.|.+.|+|.|.+..
T Consensus 9 ~ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (90)
T 2o97_B 9 KIAAGADISKAAAGRALDA--------IIASVTESLKEGDDVALVGFGTFAVKE 54 (90)
T ss_dssp HHHHTTC-CHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEC
T ss_pred HHHHHhCCCHHHHHHHHHH--------HHHHHHHHHHCCCeEEECCCEEEEEEE
Confidence 4556678999998888763 222334577889999999999999965
No 55
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=36.21 E-value=22 Score=27.19 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=19.9
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVT---KNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~---~~s~~Vk~GD~IsV 295 (322)
.|.||++.+. ..++.|+.||.|.+
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEE
Confidence 4889999763 46789999999987
No 56
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=34.14 E-value=7.1 Score=31.15 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=18.4
Q ss_pred CCcEEECCEEecCCCcccCCCCE
Q 020729 270 NGDVRVNWTTVTKNGTTLRTGDI 292 (322)
Q Consensus 270 ~G~V~VNg~~v~~~s~~Vk~GD~ 292 (322)
.|.|.|||+.+ ....+..||.
T Consensus 61 nGtVFVNGqrv--~~~~I~~gDt 81 (102)
T 3uv0_A 61 VGKIFVNDQEE--TVVDIGMENA 81 (102)
T ss_dssp SSCEEETTEEE--SEEEECGGGC
T ss_pred cCcEEECCEEe--eeEEccCCcc
Confidence 68899999998 5788888987
No 57
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=34.08 E-value=29 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=26.1
Q ss_pred HCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 269 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 269 ~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
...-++|||+.+. ....|+.||+|.+-..-.|++.
T Consensus 78 S~ngt~vNg~~i~-~~~~L~~GD~I~iG~~~~~~f~ 112 (120)
T 1wln_A 78 MDAETYVDGQRIS-ETTMLQSGMRLQFGTSHVFKFV 112 (120)
T ss_dssp SSSCEEETSCBCS-SCEEECTTCEEEETTTEEEEEE
T ss_pred CCCCEEECCEEcC-CCEECCCCCEEEECCceEEEEE
Confidence 3467899999994 4568999999988554456654
No 58
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=32.97 E-value=20 Score=28.56 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEECCEEe---cCCCcccCCCCEEEE
Q 020729 273 VRVNWTTV---TKNGTTLRTGDIVSV 295 (322)
Q Consensus 273 V~VNg~~v---~~~s~~Vk~GD~IsV 295 (322)
|.|||+.+ ...++.|+.||.|++
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 89999776 357899999999988
No 59
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=30.25 E-value=28 Score=29.62 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.9
Q ss_pred cEEECCEEecC---CCcccCCCCEEEEe
Q 020729 272 DVRVNWTTVTK---NGTTLRTGDIVSVS 296 (322)
Q Consensus 272 ~V~VNg~~v~~---~s~~Vk~GD~IsVr 296 (322)
.|.||++.+.. .++.|++||.|.|-
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 59999999843 27899999999984
No 60
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=29.27 E-value=1.2e+02 Score=22.60 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=37.1
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCC-CEEEEeecCeEEEEEeecccccceEEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG-DIVSVSGKGRIKIGEINSTRKGKFAVE 317 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~G-D~IsVrg~GR~~i~ei~~TKKgR~~i~ 317 (322)
.+||..|.+++.++. .+|.-+--.|. -.+| =.+||+..|+++=-.|..+..|+|.+.
T Consensus 9 ~isR~~Ae~lL~~~~--~~G~FLVR~S~-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 9 CLTKRECEALLLKGG--VDGNFLIRDSE-SVPGALCLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp SCCHHHHHHHHHTTC--STTEEEEEECS-SSTTCEEEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC--CCceEEEEeCC-CCCCCEEEEEEECCEEEEEEEEECCCCeEEEe
Confidence 799999999998633 45544322221 1234 378888888776555655667887764
No 61
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=28.64 E-value=27 Score=26.85 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=22.8
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
+-++|||+.+. ....|+.||+|.+-. -.|++.
T Consensus 69 nGt~vng~~i~-~~~~L~~Gd~i~~G~-~~~~~~ 100 (106)
T 3gqs_A 69 NGVIVEGRKIE-HQSTLSANQVVALGT-TLFLLV 100 (106)
T ss_dssp SCCEETTEECS-SEEECCTTCCEEETT-EEEEEE
T ss_pred CCeEECCEECC-CCeECCCCCEEEECC-EEEEEE
Confidence 35789999984 356899999998733 245443
No 62
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=28.28 E-value=29 Score=27.07 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=33.9
Q ss_pred hCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEe
Q 020729 255 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306 (322)
Q Consensus 255 ~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei 306 (322)
...++|+..+...+.. ........|..|+.|.++|+|.|.+..-
T Consensus 25 ~~~~lsk~~~~~vl~~--------~~~~i~~~L~~G~~V~l~gfGtF~v~~r 68 (108)
T 2np2_A 25 NNLKLEKKYIRLVIDA--------FFEELKSNLCSNNVIEFRSFGTFEVRKR 68 (108)
T ss_dssp TTCCCCHHHHHHHHHH--------HHHHHHHHHHTTCEEEETTTEEEEEEEE
T ss_pred hhcCCCHHHHHHHHHH--------HHHHHHHHHHCCCeEEecCcEEEEEEEe
Confidence 6678999999888763 2223356778899999999999999754
No 63
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=26.86 E-value=41 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.1
Q ss_pred HCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 269 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 269 ~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
...-++|||+.+......|+.||+|.+-..-.|.+.
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG~~~~~~f~ 120 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFGKSCSFLFK 120 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEETTTEEEEEE
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEECCCcEEEEE
Confidence 345689999998433588999999988542244443
No 64
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=26.74 E-value=61 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.6
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeecC
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsVrg~G 299 (322)
+-++|||+.+.. ..|+.||+|.+-..-
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~iG~~~ 108 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVMGPQV 108 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEECSTTC
T ss_pred CceEECCEEeEe--EECCCCCEEEECCEE
Confidence 468999999843 899999999884443
No 65
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=26.52 E-value=36 Score=25.72 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.5
Q ss_pred CcEEECCEEecCCCcccCCCCEEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
+-++|||+.+. ...|++||.|.+
T Consensus 65 nGt~vng~~i~--~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ--EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS--EEECCTTCEEEE
T ss_pred CCEEECCEECc--eEECCCCCEEEE
Confidence 35899999984 689999999987
No 66
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=25.68 E-value=22 Score=28.37 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.1
Q ss_pred cEEECCEEe---cCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTV---TKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v---~~~s~~Vk~GD~IsV 295 (322)
.|.||++.+ ...++.|+.||.|++
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEE
Confidence 399999854 457899999999988
No 67
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=25.52 E-value=22 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=34.0
Q ss_pred HHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 252 ~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
.++...++|+..+...++. ........|..|+.|.++|+|.|.+..
T Consensus 12 ~ia~~~~lsk~~~~~~v~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 57 (93)
T 3rhi_A 12 NVAQNAEISQKEATVVVQT--------VVESITNTLAAGEKVQLIGFGTFEVRE 57 (93)
T ss_dssp HHHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHHhCcCHHHHHHHHHH--------HHHHHHHHHhCCCEEEEcCCEEEEEEE
Confidence 3444468899998888763 222234577889999999999999865
No 68
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=24.91 E-value=55 Score=26.40 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.2
Q ss_pred CCcEEECCEEecCCC-cccCCCCEEEEe
Q 020729 270 NGDVRVNWTTVTKNG-TTLRTGDIVSVS 296 (322)
Q Consensus 270 ~G~V~VNg~~v~~~s-~~Vk~GD~IsVr 296 (322)
..-.+|||+.+.... ..|+.||+|.+=
T Consensus 93 tNGT~vNg~ri~~~~~~~L~~GD~I~~G 120 (130)
T 4h87_A 93 THGTFLNKTRIPPRTYCRVHVGHVVRFG 120 (130)
T ss_dssp SSCEEETTEECCTTCCEECCTTCEEEET
T ss_pred CCceEECCEECCCCceeECCCCCEEEEC
Confidence 456899999984322 579999999873
No 69
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=23.42 E-value=1.3e+02 Score=22.56 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=36.6
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeecCeEEEEEeecccccceEEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAVE 317 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD-~IsVrg~GR~~i~ei~~TKKgR~~i~ 317 (322)
.+||..|.+++.++. .+|.-+--.|.. .+|+ .+||+..|+++=-.|..+..|+|.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~-~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSES-VPGVYCLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSS-STTCEEEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCC-CCCCEEEEEEECCeEEEEEEEECCCCeEEEe
Confidence 799999999986322 345433222211 3454 78899888776555655667888764
No 70
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=22.80 E-value=26 Score=26.24 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=33.6
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 253 Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
++...++|+..+...+.. ........|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (90)
T 1mul_A 10 IAEKAELSKTQAKAALES--------TLAAITESLKEGDAVQLVGFGTFKVNH 54 (90)
T ss_dssp HHHHTTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEEcCCeEEEEEE
Confidence 445568899988887763 222334577889999999999999965
No 71
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=21.83 E-value=66 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=21.1
Q ss_pred CcEEECCEEecC-CCcccCCCCEEEEee
Q 020729 271 GDVRVNWTTVTK-NGTTLRTGDIVSVSG 297 (322)
Q Consensus 271 G~V~VNg~~v~~-~s~~Vk~GD~IsVrg 297 (322)
.-.+|||+.+.. ....|+.||+|.+-.
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 458999999832 148899999999954
No 72
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=21.44 E-value=59 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeecCeEEE
Q 020729 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303 (322)
Q Consensus 270 ~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i 303 (322)
..-++|||+.+. ...|+.||+|.+-. -+|++
T Consensus 72 ~nGt~vng~~i~--~~~L~~gd~i~iG~-~~l~~ 102 (115)
T 2xt9_B 72 LNGTYVNREPVD--SAVLANGDEVQIGK-FRLVF 102 (115)
T ss_dssp SSCEEETTEECS--EEEECTTCEEEETT-EEEEE
T ss_pred CCCeEECCEEcc--eEECCCCCEEEECC-EEEEE
Confidence 345889999984 57899999999832 34444
No 73
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=21.39 E-value=29 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 253 Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
++...++|+..+...++. ........|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (94)
T 1p71_A 10 VAEKASVTKKQADAVLTA--------ALETIIEAVSSGDKVTLVGFGSFESRE 54 (94)
T ss_dssp HHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEecCCEEEEEEE
Confidence 444468899888887663 222334577889999999999999965
No 74
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=21.29 E-value=1e+02 Score=24.36 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=22.3
Q ss_pred HCCcEEECCEEecC-CCcccCCCCEEEEeec
Q 020729 269 SNGDVRVNWTTVTK-NGTTLRTGDIVSVSGK 298 (322)
Q Consensus 269 ~~G~V~VNg~~v~~-~s~~Vk~GD~IsVrg~ 298 (322)
...-..|||+.+.. ....|+.||+|.+-..
T Consensus 77 S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~ 107 (127)
T 1g6g_A 77 STNGTWLNGQKVEKNSNQLLSQGDEITVGVG 107 (127)
T ss_dssp CSSCCEETTEECCTTCCEECCTTCEEEECTT
T ss_pred CcCCeEECCEEcCCCCeEEcCCCCEEEECCC
Confidence 34567899999843 2488999999998543
No 75
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=21.14 E-value=30 Score=26.56 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 253 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 253 Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
++...++|+..+...++. ........|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~lsk~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (99)
T 3c4i_A 10 LTQKLGSDRRQATAAVEN--------VVDTIVRAVHKGDSVTITGFGVFEQRR 54 (99)
T ss_dssp HHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCEEEECCCEEEEEEE
Confidence 444468888888887663 222334577889999999999999965
No 76
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.03 E-value=1.7e+02 Score=22.62 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=36.0
Q ss_pred CcCHHHHHHHHHC-CcEEECCEEecCCCcccCCC-CEEEEeecCeEEEEEeecccccceEEE
Q 020729 258 KLSRSKLVNLISN-GDVRVNWTTVTKNGTTLRTG-DIVSVSGKGRIKIGEINSTRKGKFAVE 317 (322)
Q Consensus 258 ~~SRs~a~~lI~~-G~V~VNg~~v~~~s~~Vk~G-D~IsVrg~GR~~i~ei~~TKKgR~~i~ 317 (322)
.+||..|.++++. + .+|.-+-..|.. .+| =.|||+..|+++=-.|..+..|+|.|.
T Consensus 16 ~isR~eAe~lL~~~~---~~G~FLVR~S~~-~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~ 73 (119)
T 2ysx_A 16 NITRSKAEELLSRTG---KDGSFLVRASES-ISRAYALCVLYRNCVYTYRILPNEDDKFTVQ 73 (119)
T ss_dssp SCCHHHHHHHHHHHC---CTTEEEEEECSS-CTTSEEEEEECSSCEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC---CCCEEEEEeCCC-CCCCEEEEEEECCEEEEEEEEEcCCCCEEEe
Confidence 7999999999875 3 344333222221 234 378888888776555655667887764
No 77
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=20.91 E-value=45 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=23.9
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
+-++|||+.+. ....|+.||+|.+- .-.|++.
T Consensus 75 nGt~vNg~~i~-~~~~L~~Gd~i~iG-~~~~~~~ 106 (128)
T 1r21_A 75 NPTQVNGSVID-EPVRLKHGDVITII-DRSFRYE 106 (128)
T ss_dssp SCCEETTEECS-SCEECCTTEEEECS-SCEEEEE
T ss_pred CCEEECCEECC-CcEEcCCCCEEEEC-CEEEEEE
Confidence 45789999984 46889999999883 3455554
No 78
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=20.76 E-value=31 Score=26.08 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 253 ASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 253 Ls~~-~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
++.. .++|+..+...+.. ........|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 55 (94)
T 1owf_B 10 LATQQSHIPAKTVEDAVKE--------MLEHMASTLAQGERIAIRGFGSFSLHY 55 (94)
T ss_dssp HHHHCTTSCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHhcCCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEEcCcEEEEEEE
Confidence 4444 48899988887763 222334677889999999999999975
No 79
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=20.49 E-value=1.2e+02 Score=23.97 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=35.9
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeecCeEEEEEeecccccceEEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAVE 317 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD-~IsVrg~GR~~i~ei~~TKKgR~~i~ 317 (322)
.+||..|.+++.++. .+|.-+--.|.. .+|+ .+||+..|+++=-.|..+..|+|.+.
T Consensus 10 ~isR~eAe~lL~~~~--~~G~FLVR~S~~-~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 10 KISRETGEKLLLATG--LDGSYLLRDSES-VPGVYCLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp SCCHHHHHHHHHHHC--CTTCEEEEECSS-STTCEEEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHhcCC--CCCEEEEeecCC-CCCCEEEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 799999999986321 234322112211 2343 78888888777555655677888875
No 80
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=20.36 E-value=92 Score=23.91 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=26.5
Q ss_pred CcCCCchhhHHHHHcCCCCCCCcccEEEecCCeEEEEec
Q 020729 163 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 201 (322)
Q Consensus 163 F~~lsHrD~LGaLm~LGI~RekiGDI~v~~~~~a~v~v~ 201 (322)
|..-.-+|++|+|..+|+ -|.|+.++|+-+|+..+
T Consensus 27 fg~~~v~ev~~am~~~g~----~gkii~~~dGl~y~~T~ 61 (85)
T 2l48_A 27 FSPYETPDVMGALTSLKM----TADFILQSDGLTYFISK 61 (85)
T ss_dssp BCTTTHHHHHHHHHHTTC----CEEEEECTTSCEEEEEC
T ss_pred cCHHHHHHHHHHHHHcCc----eEEEEECCCceEEEEeC
Confidence 334467999999999999 59999988766655443
Done!