Query 020729
Match_columns 322
No_of_seqs 211 out of 1547
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 07:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020729.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020729hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vioa2 d.66.1.5 (A:0-57) Pseu 99.4 1.7E-13 1.2E-17 98.4 4.3 52 246-297 1-52 (58)
2 d1kska3 d.66.1.5 (A:1-59) Pseu 99.3 7.7E-13 5.6E-17 95.2 4.1 52 247-298 1-52 (59)
3 d1dm9a_ d.66.1.3 (A:) Heat sho 99.2 5.6E-11 4.1E-15 94.8 9.4 61 245-306 3-64 (104)
4 d1p9ka_ d.66.1.6 (A:) Hypothet 98.7 6.4E-10 4.7E-14 84.3 -0.4 59 244-303 18-77 (79)
5 d1c06a_ d.66.1.2 (A:) Ribosoma 98.6 4.1E-08 3E-12 83.3 6.5 54 246-299 50-104 (159)
6 d2gy9d1 d.66.1.2 (D:2-205) Rib 98.4 9.5E-08 6.9E-12 84.0 5.1 53 246-298 93-146 (204)
7 d2uubd1 d.66.1.2 (D:2-209) Rib 98.4 2.1E-07 1.6E-11 81.9 6.9 54 246-299 97-151 (208)
8 d1h3fa2 d.66.1.4 (A:352-432) T 97.2 0.00066 4.8E-08 50.4 7.9 50 246-295 17-67 (81)
9 d1jh3a_ d.66.1.4 (A:) Tyrosyl- 96.8 0.0028 2E-07 48.4 8.6 44 249-292 35-78 (99)
10 d2affa1 b.26.1.2 (A:3-100) Ant 75.0 1.4 0.0001 32.1 4.1 33 270-304 64-96 (98)
11 d2g1la1 b.26.1.2 (A:498-599) K 64.6 3.2 0.00024 30.3 4.1 25 270-295 68-92 (102)
12 d1vjka_ d.15.3.1 (A:) Molybdop 58.2 2.7 0.0002 29.6 2.6 23 272-295 61-83 (88)
13 d2ff4a3 b.26.1.2 (A:284-382) P 53.8 4.4 0.00032 29.5 3.1 23 272-295 66-88 (99)
14 d2cu3a1 d.15.3.2 (A:1-63) Unch 52.5 5.1 0.00037 27.0 3.1 42 246-295 13-57 (63)
15 d1zud21 d.15.3.2 (2:2-66) Thia 51.0 6.4 0.00046 26.6 3.4 44 245-296 13-59 (65)
16 d1tygb_ d.15.3.2 (B:) Thiamin 45.8 9.5 0.00069 25.6 3.6 47 241-295 10-59 (65)
17 d1fm0d_ d.15.3.1 (D:) Molybdop 41.4 11 0.00078 26.1 3.5 23 272-295 52-74 (81)
18 d1tkea1 d.15.10.1 (A:1-62) Thr 35.5 12 0.00086 24.9 2.7 25 270-295 35-59 (62)
19 d1owfb_ a.55.1.1 (B:) Integrat 33.4 5.2 0.00038 29.0 0.5 47 251-305 9-55 (94)
20 d1v8ca1 d.15.3.1 (A:1-87) MoaD 31.6 14 0.001 25.8 2.7 24 272-295 54-80 (87)
21 d1wlna1 b.26.1.2 (A:8-114) Afa 31.1 16 0.0012 26.7 3.1 32 271-303 73-104 (107)
22 d2o97b1 a.55.1.1 (B:1-90) HU p 31.1 5 0.00037 28.8 0.1 46 252-305 9-54 (90)
23 d1i3za_ d.93.1.1 (A:) Ews/fli1 29.9 60 0.0044 22.8 6.3 56 258-316 9-65 (103)
24 d1xo3a_ d.15.3.3 (A:) C9orf74 28.6 14 0.0011 26.6 2.4 24 272-295 68-94 (101)
25 d1gxca_ b.26.1.2 (A:) Chk2 kin 27.5 15 0.0011 27.1 2.4 28 271-298 75-103 (116)
26 d1nyra2 d.15.10.1 (A:4-62) Thr 26.3 13 0.00094 24.5 1.6 33 259-295 26-58 (59)
27 d1owfa_ a.55.1.1 (A:) Integrat 24.9 11 0.00078 27.2 1.0 47 251-305 9-55 (96)
28 d1mula_ a.55.1.1 (A:) HU prote 23.7 12 0.00085 26.7 1.0 48 251-306 8-55 (90)
29 d2brfa1 b.26.1.2 (A:8-108) Pol 23.6 14 0.00099 26.9 1.4 32 270-302 62-94 (101)
30 d1d4ta_ d.93.1.1 (A:) The Xlp 23.1 63 0.0046 22.4 5.2 56 258-316 10-66 (104)
31 d1huua_ a.55.1.1 (A:) HU prote 22.7 13 0.00091 26.5 1.0 47 252-306 9-55 (90)
32 d1vhka1 b.122.1.2 (A:2-73) Hyp 22.5 72 0.0053 21.1 5.2 56 265-320 10-68 (72)
33 d1r1qa_ d.93.1.1 (A:) GRB2-rel 21.9 64 0.0047 22.5 5.0 55 258-316 12-67 (97)
34 d1rwsa_ d.15.3.2 (A:) Hypothet 21.7 14 0.001 25.5 1.0 43 245-296 20-62 (68)
35 d1ryja_ d.15.3.2 (A:) Hypothet 21.6 43 0.0031 22.7 3.5 40 247-295 24-63 (70)
36 d1p71a_ a.55.1.1 (A:) HU prote 21.5 14 0.00099 26.5 1.0 46 252-305 9-54 (94)
37 d1wxqa2 d.15.10.2 (A:320-395) 21.4 8.6 0.00063 27.1 -0.2 23 272-295 51-73 (76)
38 d1opka2 d.93.1.1 (A:140-240) A 21.1 51 0.0037 23.1 4.3 55 258-316 11-66 (101)
39 d2piea1 b.26.1.2 (A:13-139) Ub 20.7 35 0.0026 25.7 3.4 26 270-295 70-96 (127)
40 d1g6ga_ b.26.1.2 (A:) Phosphot 20.6 32 0.0024 25.6 3.2 26 271-296 79-105 (127)
41 d1a81a1 d.93.1.1 (A:9-137) Syk 20.5 84 0.0061 23.3 5.7 57 258-316 11-68 (129)
42 d1umka1 b.43.4.2 (A:30-153) cy 20.2 29 0.0021 25.1 2.8 21 284-304 101-122 (124)
No 1
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.36 E-value=1.7e-13 Score=98.42 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=50.0
Q ss_pred ccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 020729 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 297 (322)
Q Consensus 246 S~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg 297 (322)
|||||.+|+.....||++++++|++|+|.|||+++++|++.|++||.|+++|
T Consensus 1 smRLD~~Ls~~~~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~g 52 (58)
T d1vioa2 1 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 52 (58)
T ss_dssp CEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEECC
Confidence 7999999999889999999999999999999999999999999999999975
No 2
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.29 E-value=7.7e-13 Score=95.15 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=49.7
Q ss_pred cHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeec
Q 020729 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298 (322)
Q Consensus 247 ~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~ 298 (322)
||||.||+....+||++|+++|++|+|+|||+++++|++.|+++|.|+++|.
T Consensus 1 mRLdk~l~~~~~~SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~dg~ 52 (59)
T d1kska3 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN 52 (59)
T ss_dssp EEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHcCcEEECCEEeecCCcCcCCCCEEEECCE
Confidence 7999999998999999999999999999999999999999999999999764
No 3
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=99.16 E-value=5.6e-11 Score=94.77 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=55.6
Q ss_pred cccHHHHHHH-hCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEe
Q 020729 245 ASLRVDALAS-AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306 (322)
Q Consensus 245 aS~RLD~~Ls-~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei 306 (322)
+.||||.||. ..+..||+.|+++|++|+|+|||+.+ +||+.|++||+|+|+..++....+|
T Consensus 3 ~~mRlD~~L~~~r~~ktR~~A~~~i~~G~V~vNg~~v-Kps~~vk~GDvI~i~~~~~~~~i~V 64 (104)
T d1dm9a_ 3 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIV 64 (104)
T ss_dssp TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEEEE
T ss_pred ccEeHHHHHHHhhhHhhHHHHHHHHHcCCeeeCCeec-cccccCCCCCEEEEEeCCeEEEEEE
Confidence 4699999985 55788999999999999999999997 7999999999999999998887766
No 4
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=98.70 E-value=6.4e-10 Score=84.26 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=51.2
Q ss_pred ccccHHHHHHHhCC-CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEE
Q 020729 244 EASLRVDALASAGF-KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303 (322)
Q Consensus 244 vaS~RLD~~Ls~~~-~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i 303 (322)
.+.+|||++|+... -.||++|+++|++|+|+|||+++++|++.|.+||+|++.|. ++++
T Consensus 18 ~~~irL~k~L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vdG~-~i~i 77 (79)
T d1p9ka_ 18 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH-SVQV 77 (79)
T ss_dssp CSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE-EEEE
T ss_pred CCcEEHHHHHHHCCCccCHHHHHHHHHhCCcccCCEEeccccccCCCCCEEEECCE-EEEE
Confidence 34589999998764 56999999999999999999999999999999999999864 4443
No 5
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.55 E-value=4.1e-08 Score=83.32 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=49.7
Q ss_pred ccHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecC
Q 020729 246 SLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299 (322)
Q Consensus 246 S~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~G 299 (322)
-+|||.++ ..+|..||..|+++|.+|+|.|||+.++-||+.|++||+|+++-+-
T Consensus 50 E~RlD~vv~r~gfa~t~~~arQ~v~Hghi~vNgk~v~iPSy~vk~GDvIsvkeks 104 (159)
T d1c06a_ 50 ESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKS 104 (159)
T ss_dssp HHCHHHHHHHHTSSSSHHHHHHHHHTSCEEETTEECCCSSCCCCSSCEEEECGGG
T ss_pred HHHhhhhhccCcccCCHHHHHHHHHhcceEccceEEEecceeecCCcEEeecccc
Confidence 47999996 6778999999999999999999999999999999999999998653
No 6
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=98.40 E-value=9.5e-08 Score=84.02 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=49.3
Q ss_pred ccHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeec
Q 020729 246 SLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 298 (322)
Q Consensus 246 S~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~ 298 (322)
-+|||.++ ..+|--||..|+++|.+|+|.|||+.++-||+.|++||+|+|+-.
T Consensus 93 E~RLDnvv~R~gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDvIsvkek 146 (204)
T d2gy9d1 93 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 146 (204)
T ss_dssp TTBHHHHHHHHTSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCBEEECTT
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhcceecCCEEEEeccEeecCCCEEEeccc
Confidence 47999996 677899999999999999999999999999999999999999854
No 7
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=98.38 E-value=2.1e-07 Score=81.92 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=49.5
Q ss_pred ccHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecC
Q 020729 246 SLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 299 (322)
Q Consensus 246 S~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~G 299 (322)
-+|||.++ ..+|-.||..|+++|.+|+|.|||+.++-||+.|++||+|+|+-.-
T Consensus 97 E~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vreks 151 (208)
T d2uubd1 97 ESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKS 151 (208)
T ss_dssp HTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGG
T ss_pred HHHHHHHHHhccccccHHHHHHHHHhcCeecCCeEEEeccEEecCCceeehhhcc
Confidence 47999997 5677999999999999999999999999999999999999998653
No 8
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=97.17 E-value=0.00066 Score=50.37 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=41.8
Q ss_pred ccHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 020729 246 SLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 246 S~RLD~~L-s~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.+.|..+| ...+--|++.|+++|++|.|+|||+.++++++.+..++.+.+
T Consensus 17 ~i~l~~ll~~~gl~~S~searRlI~~g~V~iN~~ki~d~~~~l~~~~~~il 67 (81)
T d1h3fa2 17 RIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRIL 67 (81)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEE
T ss_pred cccHHHHHHHcCCCcCHHHHHHHHHcCCEEECCEEecCccceecCCCeEEE
Confidence 35666665 555688999999999999999999999999999988876555
No 9
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=96.78 E-value=0.0028 Score=48.45 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=39.2
Q ss_pred HHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCE
Q 020729 249 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 292 (322)
Q Consensus 249 LD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~ 292 (322)
+|.++...+-.|++.++++|++|-|+|||+.++++++.+.++|.
T Consensus 35 ~~ll~~~~l~~S~seaRrlI~~ggv~iN~~kv~d~~~~l~~~~~ 78 (99)
T d1jh3a_ 35 VELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 78 (99)
T ss_dssp HHHHHHHTSCCSHHHHHHHHHSTTEEETTEECCSTTTCCSSTTT
T ss_pred HHHHHHcCCCcCHHHHHHHHHcCCEEECCEEecCcccccCHhHc
Confidence 56666777888999999999999999999999999999998774
No 10
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.96 E-value=1.4 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeecCeEEEE
Q 020729 270 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 304 (322)
Q Consensus 270 ~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ 304 (322)
.+-++|||+.+ .....|+.||+|.+ |...|++.
T Consensus 64 ~ng~~vNg~~l-~~~~~L~~Gd~I~i-G~~~~~fe 96 (98)
T d2affa1 64 TNPTQVNGSVI-DEPVRLKHGDVITI-IDRSFRYE 96 (98)
T ss_dssp SSCCEETTEEC-SSCEEECTTCEEEE-TTEEEEEE
T ss_pred cccceECCEEC-CCceECCCCCEEEE-CCEEEEEE
Confidence 44578999998 44578999999999 44466553
No 11
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.63 E-value=3.2 Score=30.27 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEE
Q 020729 270 NGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 270 ~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
...++|||++++ ....|+.||+|.+
T Consensus 68 ~~gt~VNg~~i~-~~~~L~~gD~I~~ 92 (102)
T d2g1la1 68 GAETYVNGKLVT-EPLVLKSGNRIVM 92 (102)
T ss_dssp TCCEEETTEECC-SCEECCTTCEEEE
T ss_pred CCCeEECCeEcc-ceeEcCCCCEEEE
Confidence 556999999995 4589999999998
No 12
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=58.20 E-value=2.7 Score=29.63 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.7
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.+.||++.+ ..++.|++||.|.+
T Consensus 61 ~iavN~~~~-~~d~~L~~gDevai 83 (88)
T d1vjka_ 61 NIAVNGRYV-SWDEELKDGDVVGV 83 (88)
T ss_dssp EEEETTBCC-CTTCBCCTTCEEEE
T ss_pred EEEEcceEc-CCCcCcCCCCEEEE
Confidence 589999998 68999999999986
No 13
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=53.80 E-value=4.4 Score=29.54 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=19.3
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
-++|||+.+. ....|++||+|.|
T Consensus 66 Gt~vNg~~i~-~~~~L~~Gd~i~i 88 (99)
T d2ff4a3 66 GVHVQHERIR-SAVTLNDGDHIRI 88 (99)
T ss_dssp CCEETTEECS-SEEEECTTCEEEE
T ss_pred CCeECCEEcC-CceECCCCCEEEE
Confidence 4789999984 4568999999998
No 14
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=52.53 E-value=5.1 Score=27.05 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=29.3
Q ss_pred ccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEE
Q 020729 246 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSV 295 (322)
Q Consensus 246 S~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~---s~~Vk~GD~IsV 295 (322)
++.|..+|.. +++..+ .=.|.+|++.+.+. ++.+++||.|.|
T Consensus 13 ~~tl~~LL~~-l~~~~~-------~vAV~vN~~ivpr~~~~~~~l~~gD~iEI 57 (63)
T d2cu3a1 13 GKTLKEVLEE-MGVELK-------GVAVLLNEEAFLGLEVPDRPLRDGDVVEV 57 (63)
T ss_dssp TCCHHHHHHH-HTBCGG-------GEEEEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred CCCHHHHHHH-cCCCCC-------cEEEEECCEEcCHHHcCcccCCCCCEEEE
Confidence 4567888775 333321 12588999998443 689999999987
No 15
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=51.04 E-value=6.4 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=29.4
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecC---CCcccCCCCEEEEe
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTK---NGTTLRTGDIVSVS 296 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~---~s~~Vk~GD~IsVr 296 (322)
+++.|..+|.. ++++.+ .=.|.||++.+.+ .++.|++||.|.|=
T Consensus 13 ~~~tl~~ll~~-l~~~~~-------~vaV~vN~~ivpk~~~~~~~L~~gD~ieIv 59 (65)
T d1zud21 13 AGQTVHELLEQ-LDQRQA-------GAALAINQQIVPREQWAQHIVQDGDQILLF 59 (65)
T ss_dssp TTCBHHHHHHH-HTCCCT-------TEEEEETTEECCGGGTTTCBCCTTCEEEEE
T ss_pred CCCcHHHHHHH-cCCCCC-------cEEEEECCEEcCHHHHhhccCCCCCEEEEE
Confidence 34567777765 233222 1258899999843 46899999999873
No 16
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=45.77 E-value=9.5 Score=25.64 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.1
Q ss_pred eecccccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEec---CCCcccCCCCEEEE
Q 020729 241 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT---KNGTTLRTGDIVSV 295 (322)
Q Consensus 241 ~~~vaS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~---~~s~~Vk~GD~IsV 295 (322)
+.....+.|..+|... ++.. +.=.|.+|++.+. ..++.+++||.|.|
T Consensus 10 ~~~~~~~tl~~LL~~l-~~~~-------~~vAVevN~~iv~k~~~~~~~L~~gD~IEI 59 (65)
T d1tygb_ 10 KWKKDTGTIQDLLASY-QLEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEI 59 (65)
T ss_dssp CCSSSCCBHHHHHHHT-TCTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EcCCCcccHHHHHHHc-CCCC-------CcEEEEECCEEcCHHHcCcccCCCCCEEEE
Confidence 3333446788888773 4332 2336899999883 34589999999987
No 17
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
Probab=41.43 E-value=11 Score=26.15 Aligned_cols=23 Identities=35% Similarity=0.270 Sum_probs=20.0
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
+|.+|++.+ ..+..|+.||.|.+
T Consensus 52 ~vavn~~~~-~~~~~l~~gdevAi 74 (81)
T d1fm0d_ 52 LAAVNQTLV-SFDHPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEEC-CTTCBCCTTCEEEE
T ss_pred EEecCceec-CCCCCcCCCCEEEE
Confidence 567899987 78999999999986
No 18
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=35.54 E-value=12 Score=24.87 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEE
Q 020729 270 NGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 270 ~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.=..+|||+.+ +.++.++.|+.|++
T Consensus 35 avaa~vng~l~-dL~~~l~~d~~vei 59 (62)
T d1tkea1 35 CIAGRVNGELV-DACDLIENDAQLSI 59 (62)
T ss_dssp CCEEEETTEEE-ETTCCBCSCEEEEE
T ss_pred EEEEEECCEEe-CCCcCcCCCCEEEE
Confidence 33578999988 89999999999876
No 19
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=33.40 E-value=5.2 Score=29.02 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=33.4
Q ss_pred HHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 251 ~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
.+....-++|...+.+.++. ........+..|+.|.++|+|.|++..
T Consensus 9 ~ia~~~~~ls~~~~~~~v~~--------~~~~i~~~L~~~~~V~l~gfG~F~~~~ 55 (94)
T d1owfb_ 9 RLATQQSHIPAKTVEDAVKE--------MLEHMASTLAQGERIAIRGFGSFSLHY 55 (94)
T ss_dssp HHHHHCTTSCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCCCHHHHHHHHHH--------HHHHHHHHHHcCCeEEecceeEEEEee
Confidence 33335458899988887753 222334567789999999999999865
No 20
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=31.62 E-value=14 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.7
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVT---KNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~---~~s~~Vk~GD~IsV 295 (322)
.|.|||+.+. ..+..|+.||.|.+
T Consensus 54 ~i~vng~~i~~~~~~~~~l~~gdeV~i 80 (87)
T d1v8ca1 54 SVFLEGRDVRYLQGLSTPLSPGATLDL 80 (87)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEEcCeeeecccCCcccCCCCCEEEE
Confidence 4999999884 24788999999886
No 21
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.14 E-value=16 Score=26.68 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=23.5
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeecCeEEE
Q 020729 271 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 303 (322)
Q Consensus 271 G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i 303 (322)
..++|||+.+. ....|+.||.|.+=..--|++
T Consensus 73 ~gt~vng~~v~-~~~~L~~gd~i~iG~~~~Frf 104 (107)
T d1wlna1 73 AETYVDGQRIS-ETTMLQSGMRLQFGTSHVFKF 104 (107)
T ss_dssp SCEEETSCBCS-SCEEECTTCEEEETTTEEEEE
T ss_pred cceEEcccccc-ceeECCCCCEEEECCceEEEE
Confidence 56999999984 456899999998843333444
No 22
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=31.09 E-value=5 Score=28.78 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=33.7
Q ss_pred HHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 252 ~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
-++...++|+..+.+.++. ........|..|+.|.++|+|.|++..
T Consensus 9 ~ia~~~~l~~~~~~~~v~~--------~~~~i~~~L~~~~~v~l~~fG~F~~~~ 54 (90)
T d2o97b1 9 KIAAGADISKAAAGRALDA--------IIASVTESLKEGDDVALVGFGTFAVKE 54 (90)
T ss_dssp HHHHTTC-CHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEC
T ss_pred HHHHccCCCHHHHHHHHHH--------HHHHHHHHHHcCCeEeccceEEEEEEe
Confidence 3567789999999888763 222234567789999999999999964
No 23
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.93 E-value=60 Score=22.84 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=37.1
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCC-CEEEEeecCeEEEEEeecccccceEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG-DIVSVSGKGRIKIGEINSTRKGKFAV 316 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~G-D~IsVrg~GR~~i~ei~~TKKgR~~i 316 (322)
.+||..|.+++.++. .+|.-+--.|.. .+| =+|||+..|+++=-.|..+..|++.+
T Consensus 9 ~isR~~AE~lL~~~~--~~G~FLVR~S~~-~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~ 65 (103)
T d1i3za_ 9 CLTKRECEALLLKGG--VDGNFLIRDSES-VPGALCLCVSFKKLVYSYRIFREKHGYYRI 65 (103)
T ss_dssp SCCHHHHHHHHHTTC--STTEEEEEECSS-STTCEEEEEECSSSEEEEEEEECTTSCEEE
T ss_pred CCCHHHHHHHHHhCC--CCCeEEEEecCC-CCCCEEEEEEeCCeEEEEEeEEcCCCcEEE
Confidence 799999988886543 266554333322 345 56899999987654555566677765
No 24
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.59 E-value=14 Score=26.62 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=19.9
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVT---KNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~---~~s~~Vk~GD~IsV 295 (322)
.|.|||+-+. ..++.|+.||.|++
T Consensus 68 ~v~vN~~di~~l~gl~t~l~dgDeV~~ 94 (101)
T d1xo3a_ 68 LVLINDADWELLGELDYQLQDQDSILF 94 (101)
T ss_dssp EEEETTEEHHHHTTTSCCCCTTCEEEE
T ss_pred EEEEcCcceeccCCCccCcCCCCEEEE
Confidence 6889998753 35899999999987
No 25
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.49 E-value=15 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=21.5
Q ss_pred CcEEECCEEecCC-CcccCCCCEEEEeec
Q 020729 271 GDVRVNWTTVTKN-GTTLRTGDIVSVSGK 298 (322)
Q Consensus 271 G~V~VNg~~v~~~-s~~Vk~GD~IsVrg~ 298 (322)
.-..|||+.+.+. .+.|+.||+|++-..
T Consensus 75 NGT~vN~~~i~~~~~~~L~~gD~I~ig~~ 103 (116)
T d1gxca_ 75 NGTFVNTELVGKGKRRPLNNNSEIALSLS 103 (116)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEESST
T ss_pred cCceECCEEcCCCCEEECCCCCEEEECCC
Confidence 4489999998543 478999999999443
No 26
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=26.31 E-value=13 Score=24.49 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 020729 259 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 259 ~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
+|.+-++.. =..+|||+.+ +.++.++.|+.|.|
T Consensus 26 I~~~l~k~a---vaa~vNg~~~-dL~~~l~~d~~vei 58 (59)
T d1nyra2 26 ISPGLRKKA---VAGKFNGQLV-DLTKPLETDGSIEI 58 (59)
T ss_dssp TCHHHHHHC---CEEEETTEEE-CTTSCCCSCBCCCE
T ss_pred HChhhhheE---EEEEECCEEc-cCCcCcCCCCEEEE
Confidence 455544443 3578999988 89999999987754
No 27
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=24.91 E-value=11 Score=27.18 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 251 ~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
..|+...++|...+...++. ........|..|+.|.++|+|.|++..
T Consensus 9 ~~ia~~~~lsk~~~~~~~~~--------~~~~i~~~L~~g~~V~l~gfGtF~~~~ 55 (96)
T d1owfa_ 9 EYLFDKLGLSKRDAKELVEL--------FFEEIRRALENGEQVKLSGFGNFDLRD 55 (96)
T ss_dssp HHHHHHHCCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHHHhCCCHHHHHHHHHH--------HHHHHHHHHhcCCEEEecCEEEEEEEe
Confidence 44566678999988888763 222334567889999999999999865
No 28
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=23.68 E-value=12 Score=26.70 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=35.5
Q ss_pred HHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEe
Q 020729 251 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306 (322)
Q Consensus 251 ~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei 306 (322)
..|+...++|++.+...++. ........|..|+.|.++|+|.|.+...
T Consensus 8 ~~ia~~~~ltk~~~~~~v~~--------~~~~i~~~L~~~~~v~l~gfG~F~~~~~ 55 (90)
T d1mula_ 8 DVIAEKAELSKTQAKAALES--------TLAAITESLKEGDAVQLVGFGTFKVNHR 55 (90)
T ss_dssp HHHHHHTTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEEE
T ss_pred HHHHHhhCcCHHHHHHHHHH--------HHHHHHHHHHhCCCcEecCceEEEEEec
Confidence 34556689999999888763 2222345678899999999999999764
No 29
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.63 E-value=14 Score=26.91 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=21.3
Q ss_pred CCcEEECCEEecC-CCcccCCCCEEEEeecCeEE
Q 020729 270 NGDVRVNWTTVTK-NGTTLRTGDIVSVSGKGRIK 302 (322)
Q Consensus 270 ~G~V~VNg~~v~~-~s~~Vk~GD~IsVrg~GR~~ 302 (322)
..-..|||+.+.+ ....|++||+|+|- .|++.
T Consensus 62 ~Ngt~vNg~~l~~~~~~~L~~GD~i~l~-~~~~~ 94 (101)
T d2brfa1 62 VNPSTTGTQELKPGLEGSLGVGDTLYLV-NGLHP 94 (101)
T ss_dssp SSCCEEC-CBCCTTCEEEEETTCEEEEE-TTEEE
T ss_pred CcceEEEEEEeccceeeECCCCCEEEEc-CCeEE
Confidence 3457899988843 23679999999984 44443
No 30
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.10 E-value=63 Score=22.39 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.2
Q ss_pred CcCHHHHHHHHH-CCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEeecccccceEE
Q 020729 258 KLSRSKLVNLIS-NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAV 316 (322)
Q Consensus 258 ~~SRs~a~~lI~-~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei~~TKKgR~~i 316 (322)
.+||..|.+++. .| .+|.-+--.|..-.-.-+++++..|++.=-.|..+..|.+.+
T Consensus 10 ~isR~eAe~lL~~~~---~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~ 66 (104)
T d1d4ta_ 10 KISRETGEKLLLATG---LDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSA 66 (104)
T ss_dssp SCCHHHHHHHHHHHC---CTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEE
T ss_pred CCCHHHHHHHHhhCC---CCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCCcEEE
Confidence 799999999885 34 356544333333322367899999988765565555565544
No 31
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.67 E-value=13 Score=26.48 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred HHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEEe
Q 020729 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 306 (322)
Q Consensus 252 ~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~ei 306 (322)
-|+...++|++.+...++. ........|..|+.|.++|+|.|++..-
T Consensus 9 ~ia~~~~~~~~~~~~~~~~--------~~~~i~~~L~~~~~v~i~~fG~F~~~~~ 55 (90)
T d1huua_ 9 AVAETSGLSKKDATKAVDA--------VFDSITEALRKGDKVQLIGFGNFEVRER 55 (90)
T ss_dssp HHHHHHCCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEEE
T ss_pred HHHHhhCCCHHHHHHHHHH--------HHHHHHHHHhcCCceEeeceEEEEEEEc
Confidence 3566678899888887753 1112234677899999999999999653
No 32
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=22.52 E-value=72 Score=21.06 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHCCcEEECCEEecC--CCcccCCCCEEEE-eecCeEEEEEeecccccceEEEEEE
Q 020729 265 VNLISNGDVRVNWTTVTK--NGTTLRTGDIVSV-SGKGRIKIGEINSTRKGKFAVELIQ 320 (322)
Q Consensus 265 ~~lI~~G~V~VNg~~v~~--~s~~Vk~GD~IsV-rg~GR~~i~ei~~TKKgR~~i~l~r 320 (322)
++++..+.+.+++..... .-..+++||.|.+ .|.|..-..+|....|....+++..
T Consensus 10 ~~~~~~~~i~l~~~~~hHl~~VLR~k~Gd~i~l~dg~g~~~~~~I~~i~k~~v~~~i~e 68 (72)
T d1vhka1 10 QQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIE 68 (72)
T ss_dssp HHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEE
T ss_pred hhcccCCEEEECHHHHHHHHheeccCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEEE
Confidence 345677788888765421 3467789999998 7788777777754444556665543
No 33
>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.90 E-value=64 Score=22.50 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=36.9
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeecCeEEEEEeecccccceEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAV 316 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD-~IsVrg~GR~~i~ei~~TKKgR~~i 316 (322)
.+||..|.+++.+.. +|.-+--.|. =.+|+ .+||+..|+++=-.|..+..|++.+
T Consensus 12 ~isR~~Ae~lL~~~~---~G~FLVR~S~-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~ 67 (97)
T d1r1qa_ 12 GLSRHQAENLLMGKD---IGFFIIRASQ-SSPGDFSISVRHEDDVQHFKVMRDTKGNYFL 67 (97)
T ss_dssp TCCHHHHHHHHHTSC---TTCEEEEECS-SSTTCEEEEEECSSSEEEEECEECTTCCEES
T ss_pred CCCHHHHHHHHhcCC---CCCEEEeecC-CCCCCEEEEEEecCCeEEEEEEEcCCCeEEe
Confidence 899999999998542 5544323332 23454 8999999987655566677777654
No 34
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.66 E-value=14 Score=25.51 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=32.9
Q ss_pred cccHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 020729 245 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 296 (322)
Q Consensus 245 aS~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVr 296 (322)
.++++-++|++. ++++. +--|.+||..+ .-+..|+.||.+.++
T Consensus 20 ~g~~v~dvL~~~-gl~~e-------~~vv~~nG~vv-~eDe~v~DGD~vei~ 62 (68)
T d1rwsa_ 20 EGMKVRDILRAV-GFNTE-------SAIAKVNGKVV-LEDDEVKDGDFVEVI 62 (68)
T ss_dssp SSCCHHHHHHTT-TCSSC-------SSCEEETTEEE-CSSSCCCSSCCCBCS
T ss_pred CCcCHHHHHHHc-CCCcc-------eEEEEECCEEe-cCCcccCCCCEEEEE
Confidence 577888888874 45542 44678899998 578999999988764
No 35
>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.59 E-value=43 Score=22.75 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=27.2
Q ss_pred cHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 020729 247 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 247 ~RLD~~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.|+..+|.. ..+| ++.=-|+.||+.+. -...++.||.|.+
T Consensus 24 ~~IkDiL~~-lEip-------ieTvVvK~NG~~Vi-eeeei~dgDeiei 63 (70)
T d1ryja_ 24 RRIKDVLGE-LEIP-------IETVVVKKNGQIVI-DEEEIFDGDIIEV 63 (70)
T ss_dssp CBHHHHHHH-TTCC-------TTTEEEEETTEECC-TTSBCCTTCEEEE
T ss_pred hhHHHHhcc-cccc-------ceEEEEecCCcEEe-chhhccCCCEEEE
Confidence 346666655 2333 23345888999995 5678999999887
No 36
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=21.54 E-value=14 Score=26.45 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeecCeEEEEE
Q 020729 252 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 305 (322)
Q Consensus 252 ~Ls~~~~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD~IsVrg~GR~~i~e 305 (322)
.|+...++|+..+...++. ........|..|+.|.++|+|.|.+..
T Consensus 9 ~ia~~~~ls~~~~~~~v~~--------~~~~i~~~L~~~~~V~l~~fG~F~~~~ 54 (94)
T d1p71a_ 9 AVAEKASVTKKQADAVLTA--------ALETIIEAVSSGDKVTLVGFGSFESRE 54 (94)
T ss_dssp HHHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhhCcCHHHHHHHHHH--------HHHHHHHHHhcCCEEEEeceEEEEEEe
Confidence 3566678999998887653 222234467789999999999999865
No 37
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.36 E-value=8.6 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=19.2
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 020729 272 DVRVNWTTVTKNGTTLRTGDIVSV 295 (322)
Q Consensus 272 ~V~VNg~~v~~~s~~Vk~GD~IsV 295 (322)
.+.+||+.+ ..++.|+.||+|+|
T Consensus 51 ~~~~~g~~v-~l~~~L~dgDvVeI 73 (76)
T d1wxqa2 51 INARTKRRV-GEDYELQFNDIVKI 73 (76)
T ss_dssp EETTTCSBC-CTTCCCCTTEEEEE
T ss_pred EECcCCEEC-CCCcCccCCCEEEE
Confidence 344599988 78999999999987
No 38
>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.05 E-value=51 Score=23.08 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=36.2
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCC-CEEEEeecCeEEEEEeecccccceEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG-DIVSVSGKGRIKIGEINSTRKGKFAV 316 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~G-D~IsVrg~GR~~i~ei~~TKKgR~~i 316 (322)
.+||..|.++++++ .||.-+--.|.. .+| =++||+..|++.=-.|..+..|++.+
T Consensus 11 ~isR~eAe~lL~~~---~~G~FLVR~S~~-~~~~~~LSv~~~~~v~H~~I~~~~~g~~~~ 66 (101)
T d1opka2 11 PVSRNAAEYLLSSG---INGSFLVRESES-SPGQRSISLRYEGRVYHYRINTASDGKLYV 66 (101)
T ss_dssp ECCHHHHHHHGGGC---CTTEEEEEECSS-STTCEEEEEEETTEEEEEECEECTTSCEES
T ss_pred CCCHHHHHHHhcCC---CCCeEEEEecCC-CCCCEEEEEEcCcceEEEEeEECCCCCEEe
Confidence 79999999998864 366544333322 234 37899999987655566666676643
No 39
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72 E-value=35 Score=25.65 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=20.5
Q ss_pred CCcEEECCEEecC-CCcccCCCCEEEE
Q 020729 270 NGDVRVNWTTVTK-NGTTLRTGDIVSV 295 (322)
Q Consensus 270 ~G~V~VNg~~v~~-~s~~Vk~GD~IsV 295 (322)
..-++|||+.+.. ....|+.||.|.+
T Consensus 70 ~NGt~lNg~~l~~~~~~~L~~GD~I~i 96 (127)
T d2piea1 70 LNGVWLNRARLEPLRVYSIHQGDYIQL 96 (127)
T ss_dssp SSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred cCCeEECCEEccCCceeEcCCCCEEEe
Confidence 3459999998842 3478999999999
No 40
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.65 E-value=32 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.3
Q ss_pred CcEEECCEEecC-CCcccCCCCEEEEe
Q 020729 271 GDVRVNWTTVTK-NGTTLRTGDIVSVS 296 (322)
Q Consensus 271 G~V~VNg~~v~~-~s~~Vk~GD~IsVr 296 (322)
.-.+|||+.+.. ....|+.||+|.+=
T Consensus 79 NGT~vNg~~l~~~~~~~L~~GD~I~iG 105 (127)
T d1g6ga_ 79 NGTWLNGQKVEKNSNQLLSQGDEITVG 105 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTCEEEEC
T ss_pred ceeEECCEEecCCCEEEcCCCCEEEEC
Confidence 457899999843 34789999999985
No 41
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.51 E-value=84 Score=23.31 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=37.2
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeecCeEEEEEeecccccceEE
Q 020729 258 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAV 316 (322)
Q Consensus 258 ~~SRs~a~~lI~~G~V~VNg~~v~~~s~~Vk~GD-~IsVrg~GR~~i~ei~~TKKgR~~i 316 (322)
.+||..|.+++..+. ..+|.-+--.|.. .+|+ +|||+..|+++=-.|..+..|.|.+
T Consensus 11 ~isR~~Ae~lL~~~g-~~dG~FLVR~S~~-~~g~y~LSv~~~~~v~H~~I~~~~~g~~~i 68 (129)
T d1a81a1 11 NITREEAEDYLVQGG-MSDGLYLLRQSRN-YLGGFALSVAHGRKAHHYTIERELNGTYAI 68 (129)
T ss_dssp SCCHHHHHHHHHHTT-CCTTEEEEEECSS-STTCEEEEEEETTEEEEEEEEECTTSCEEE
T ss_pred CCCHHHHHHHHHhcC-CCCccEEEEccCC-CCcceEEEeeecccceEEEEEEcCCCCeee
Confidence 799999999986432 1456443233332 2355 7999999987644566667777765
No 42
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.18 E-value=29 Score=25.05 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=16.7
Q ss_pred CcccCCCCEEEEee-cCeEEEE
Q 020729 284 GTTLRTGDIVSVSG-KGRIKIG 304 (322)
Q Consensus 284 s~~Vk~GD~IsVrg-~GR~~i~ 304 (322)
-..+++||.|.|+| .|+|...
T Consensus 101 l~~l~~GD~v~v~gP~G~F~y~ 122 (124)
T d1umka1 101 LESMQIGDTIEFRGPSGLLVYQ 122 (124)
T ss_dssp HHHCCTTCEEEEEEEECSEEEE
T ss_pred HhcCCCCCEEEEECCeeeeEEC
Confidence 35788999999998 5888763
Done!