BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020730
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/311 (56%), Positives = 231/311 (74%), Gaps = 9/311 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
++F+AGHRG+VGSAI R+L G L+LRT EL+L V FFA+E+ V +AAA
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENAL 137
KVGGI ANNTYPA+FI N+ I++N+I +A + V KLLFLGSSCIYPK A QP+ E+ L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 138 LTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPAL 197
L G LEPTNE YAIAKIAGIK+C++Y QY + S MPTNLYGP+DNFHP NSHV+PAL
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 198 MRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLN 248
+RRFHEA A +VVVWG+G+P+REFLHVDD+A A + +M+ L H+N
Sbjct: 185 LRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDG 308
VG+G + +I+ELA+ + + VG++G +V+D+SKPDGTPRKL+D ++L +LGW +I L G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 309 LADTYKWYLEN 319
LA TY+W+LEN
Sbjct: 305 LASTYQWFLEN 315
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/311 (56%), Positives = 231/311 (74%), Gaps = 9/311 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
++F+AGHRG+VGSAI R+L G L+LRT EL+L V FFA+E+ V +AAA
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENAL 137
KVGGI ANNTYPA+FI N+ I++N+I +A + V KLLFLGSSCIYPK A QP+ E+ L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 138 LTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPAL 197
L G LEPTNE YAIAKIAGIK+C++Y QY + S MPTNLYGP+DNFHP NSHV+PAL
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 198 MRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLN 248
+RRFHEA A +VVVWG+G+P+REFLHVDD+A A + +M+ L H+N
Sbjct: 185 LRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDG 308
VG+G + +I+ELA+ + + VG++G +V+D+SKPDGTPRKL+D ++L +LGW +I L G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 309 LADTYKWYLEN 319
LA TY+W+LEN
Sbjct: 305 LASTYQWFLEN 315
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 231/311 (74%), Gaps = 9/311 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
++F+AGHRG+VGSAI R+L G L+LRT EL+L V FFA+E+ V +AAA
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENAL 137
KVGGI ANNTYPA+FI N+ I++N+I +A + V KLLFLGSSCIYPK A QP+ E+ L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 138 LTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPAL 197
L G LEPTNE YAIA+IAGIK+C++Y QY + S MPTNLYGP+DNFHP NSHV+PAL
Sbjct: 125 LQGTLEPTNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 198 MRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLN 248
+RRFHEA A +VVVWG+G+P+REFLHVDD+A A + +M+ L H+N
Sbjct: 185 LRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDG 308
VG+G + +I+ELA+ + + VG++G +V+D+SKPDGTPRKL+D ++L +LGW +I L G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 309 LADTYKWYLEN 319
LA TY+W+LEN
Sbjct: 305 LASTYQWFLEN 315
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 231/311 (74%), Gaps = 9/311 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
++F+AGHRG+VGSAI R+L G L+LRT EL+L V FFA+E+ V +AAA
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENAL 137
KVGGI ANNTYPA+FI N+ I++N+I +A + V KLLFLG+SCIYPK A QP+ E+ L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCIYPKLAKQPMAESEL 124
Query: 138 LTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPAL 197
L G LEPTNE YAIAKIAGIK+C++Y QY + S MPTNLYGP+DNFHP NSHV+PAL
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 198 MRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLN 248
+RRFHEA A +VVVWG+G+P+REFLHVDD+A A + +M+ L H+N
Sbjct: 185 LRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDG 308
VG+G + +I+ELA+ + + VG++G +V+D+SKPDGTPRKL+D ++L +LGW +I L G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 309 LADTYKWYLEN 319
LA TY+W+LEN
Sbjct: 305 LASTYQWFLEN 315
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 231/311 (74%), Gaps = 9/311 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
++F+AGHRG+VGSAI R+L G L+LRT EL+L V FFA+E+ V +AAA
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENAL 137
KVGGI ANNTYPA+FI N+ I++N+I +A + V KLLFLGSSCIYPK A QP+ E+ L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 138 LTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPAL 197
L G LEPTNE YAIAKIAGIK+C++Y QY + S MPTNLYGP+DNFHP NSHV+PAL
Sbjct: 125 LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 198 MRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLN 248
+RRFHEA A +VVVWG+G+P+REFLHVDD+A A + +M+ L H+N
Sbjct: 185 LRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDG 308
VG+G + +I++LA+ + + VG++G +V+D+SKPDGTPRKL+D ++L +LGW +I L G
Sbjct: 245 VGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 309 LADTYKWYLEN 319
LA TY+W+LEN
Sbjct: 305 LASTYQWFLEN 315
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 230/311 (73%), Gaps = 9/311 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
++F+AGHRG+VGSAI R+L G L+LRT EL+L V FFA+E+ V +AAA
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 64
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENAL 137
KVGGI ANNTYPA+FI N+ I++N+I +A + V KLLFLGSSCIYPK A QP+ E+ L
Sbjct: 65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL 124
Query: 138 LTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPAL 197
L G LEPTNE AIAKIAGIK+C++Y QY + S MPTNLYGP+DNFHP NSHV+PAL
Sbjct: 125 LQGTLEPTNEPEAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPAL 184
Query: 198 MRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD---------EYDGLEHLN 248
+RRFHEA A +VVVWG+G+P+REFLHVDD+A A + +M+ L H+N
Sbjct: 185 LRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 244
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDG 308
VG+G + +I+ELA+ + + VG++G +V+D+SKPDGTPRKL+D ++L +LGW +I L G
Sbjct: 245 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAG 304
Query: 309 LADTYKWYLEN 319
LA TY+W+LEN
Sbjct: 305 LASTYQWFLEN 315
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 179/315 (56%), Gaps = 9/315 (2%)
Query: 15 KSAKIFVAGHRGLVGSAIVRKLLSLGF----TNLLLRTHAELDLTRQSDVESFFAAEKPS 70
+S +I V G GLVG AI +K+++ G + + + + DLT + + F +P+
Sbjct: 6 QSMRILVTGGSGLVGKAI-QKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPT 64
Query: 71 YVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQ 130
+VI AA VGG+ N Y +F N+ + NV+ SAF G +K++ S+CI+P
Sbjct: 65 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTY 124
Query: 131 PIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPEN 190
PI E + GP +N Y+ AK +AY QY + +PTN++GP+DNF+ E+
Sbjct: 125 PIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIED 184
Query: 191 SHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LN 248
HVLP L+ + H AK +G+ + VWGTG+P R+F++ DLA ++++ EY+ +E L+
Sbjct: 185 GHVLPGLIHKVHLAKSSGSA-LTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILS 243
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIE-LRD 307
VG EVSIKE AE V EA+ F GE+ +D++K DG +K +SKL + +
Sbjct: 244 VGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQ 303
Query: 308 GLADTYKWYLENVKQ 322
+ +T W+ +N +Q
Sbjct: 304 AVKETCAWFTDNYEQ 318
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 179/315 (56%), Gaps = 9/315 (2%)
Query: 15 KSAKIFVAGHRGLVGSAIVRKLLSLGF----TNLLLRTHAELDLTRQSDVESFFAAEKPS 70
+S +I V G GLVG AI +K+++ G + + + + DLT + + F +P+
Sbjct: 5 QSMRILVTGGSGLVGKAI-QKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPT 63
Query: 71 YVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQ 130
+VI AA VGG+ N Y +F N+ + NV+ SAF G +K++ S+CI+P
Sbjct: 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTY 123
Query: 131 PIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPEN 190
PI E + GP +N Y+ AK +AY QY + +PTN++GP+DNF+ E+
Sbjct: 124 PIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIED 183
Query: 191 SHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LN 248
HVLP L+ + H AK +G+ + VWGTG+P R+F++ DLA ++++ EY+ +E L+
Sbjct: 184 GHVLPGLIHKVHLAKSSGSA-LTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILS 242
Query: 249 VGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIE-LRD 307
VG EVSIKE AE V EA+ F GE+ +D++K DG +K +SKL + +
Sbjct: 243 VGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQ 302
Query: 308 GLADTYKWYLENVKQ 322
+ +T W+ +N +Q
Sbjct: 303 AVKETCAWFTDNYEQ 317
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 27/323 (8%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFF------------A 65
KI + G G + S I R+L G + +T + F
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV 90
Query: 66 AEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYP 125
E +V AA +GG+ + + + N I N+I++A G+K+ + S+CIYP
Sbjct: 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYP 150
Query: 126 KFAPQPIPENALLTG---PLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGP 182
+F +L P EP + Y + K+A ++C+ Y + G N+YGP
Sbjct: 151 EFKQLETTNVSLKESDAWPAEPQDA-YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
Query: 183 NDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYD 242
+ A R+ + +WG G R F +D+ + V+ + + D
Sbjct: 210 FGTWKGGREKAPAAFCRKAQTS----TDRFEMWGDGLQTRSFTFIDECVEGVL-RLTKSD 264
Query: 243 GLEHLNVGSGKEVSIKELAEWVKEAVGFEGEL--VWDSSKPDGTPRKLMDSSKLA-RLGW 299
E +N+GS + VS+ E+AE V + FE + + P+G + D++ + +LGW
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGW 321
Query: 300 RAKIELRDGLADTYKWYLENVKQ 322
+ L++GL TY W E +++
Sbjct: 322 APNMRLKEGLRITYFWIKEQIEK 344
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 27/323 (8%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFF------------A 65
KI + G G + S I R+L G + +T + F
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV 90
Query: 66 AEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYP 125
E +V AA +GG+ + + + N I N+I++A G+K+ + S+CIYP
Sbjct: 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYP 150
Query: 126 KFAPQPIPENALLTG---PLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGP 182
+F +L P EP + Y + K+A ++C+ Y + G N+YGP
Sbjct: 151 EFKQLETTNVSLKESDAWPAEPQDA-YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
Query: 183 NDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYD 242
+ A R+ + +WG G R F +D+ + V+ + + D
Sbjct: 210 FGTWKGGREAAPAAFCRKAQTS----TDRFEMWGDGLQTRSFTFIDECVEGVL-RLTKSD 264
Query: 243 GLEHLNVGSGKEVSIKELAEWVKEAVGFEGEL--VWDSSKPDGTPRKLMDSSKLA-RLGW 299
E +N+GS + VS+ E+AE V + FE + + P+G + D++ + +LGW
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGW 321
Query: 300 RAKIELRDGLADTYKWYLENVKQ 322
+ L++GL TY W E +++
Sbjct: 322 APNMRLKEGLRITYFWIKEQIEK 344
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 138/323 (42%), Gaps = 27/323 (8%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFF------------A 65
KI + G G + S I R+L G + +T + F
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV 90
Query: 66 AEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYP 125
E +V AA +GG+ + + + N I N+I++A G+K+ + S+CIYP
Sbjct: 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYP 150
Query: 126 KFAPQPIPENALLTG---PLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGP 182
+F +L P EP + Y + ++A ++C+ Y + G N+YGP
Sbjct: 151 EFKQLETTNVSLKESDAWPAEPQDA-YGLERLATEELCKHYNKDFGIECRIGRFHNIYGP 209
Query: 183 NDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYD 242
+ A R+ + +WG G R F +D+ + V+ + + D
Sbjct: 210 FGTWKGGREKAPAAFCRKAQTS----TDRFEMWGDGLQTRSFTFIDECVEGVL-RLTKSD 264
Query: 243 GLEHLNVGSGKEVSIKELAEWVKEAVGFEGEL--VWDSSKPDGTPRKLMDSSKLA-RLGW 299
E +N+GS + VS+ E+AE V + FE + + P+G + D++ + +LGW
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGW 321
Query: 300 RAKIELRDGLADTYKWYLENVKQ 322
+ L++GL TY W E +++
Sbjct: 322 APNMRLKEGLRITYFWIKEQIEK 344
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 138/323 (42%), Gaps = 27/323 (8%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFF------------A 65
KI + G G + S I R+L G + +T + F
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV 90
Query: 66 AEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYP 125
E +V AA +GG+ + + + N I N+I++A G+K+ + S+CIYP
Sbjct: 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYP 150
Query: 126 KFAPQPIPENALLTG---PLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGP 182
+F +L P EP + + + K+A ++C+ Y + G N+YGP
Sbjct: 151 EFKQLETTNVSLKESDAWPAEPQDA-FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
Query: 183 NDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYD 242
+ A R+ + +WG G R F +D+ + V+ + + D
Sbjct: 210 FGTWKGGREKAPAAFCRKAQTS----TDRFEMWGDGLQTRSFTFIDECVEGVL-RLTKSD 264
Query: 243 GLEHLNVGSGKEVSIKELAEWVKEAVGFEGEL--VWDSSKPDGTPRKLMDSSKLA-RLGW 299
E +N+GS + VS+ E+AE V + FE + + P+G + D++ + +LGW
Sbjct: 265 FREPVNIGSDEMVSMNEMAEMV---LSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGW 321
Query: 300 RAKIELRDGLADTYKWYLENVKQ 322
+ L++GL TY W E +++
Sbjct: 322 APNMRLKEGLRITYFWIKEQIEK 344
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 146/327 (44%), Gaps = 39/327 (11%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELD-LT---RQSDVESFFAAEKPSYVI 73
++ V G G +GS VR+LL+ + ++ LD LT ++++ A + +V
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 74 -------VAAAKVGGIHANNTYPAE------------FIAINLQIQTNVIDSAFRYGVKK 114
+ A ++ G+ A + AE F N+Q ++ A GV +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 115 LLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
++ + ++ +Y E++ PLEP N YA +K + +AY Y +
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESS----PLEP-NSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 175 MPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAV 234
N YGP HPE L+ F ++G + ++G G+ +RE++H DD +
Sbjct: 177 RCCNNYGPYQ--HPEK------LIPLFVTNLLDGGT-LPLYGDGANVREWVHTDDHCRGI 227
Query: 235 VFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTP-RKLMDSSK 293
++ E ++G G E++ +EL + +++G + V + G R +D K
Sbjct: 228 ALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGK 287
Query: 294 LAR-LGWRAKIELRDGLADTYKWYLEN 319
+ R LG+R ++ DGLA T +WY EN
Sbjct: 288 IERELGYRPQVSFADGLARTVRWYREN 314
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 39/327 (11%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELD-LT---RQSDVESFFAAEKPSYVI 73
++ V G G +GS VR+LL+ + ++ LD LT ++++ A + +V
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 74 -------VAAAKVGGIHANNTYPAE------------FIAINLQIQTNVIDSAFRYGVKK 114
+ A ++ G+ A + AE F N+Q ++ A GV +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 115 LLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
++ + + +Y E++ PLEP N YA +K + +AY Y +
Sbjct: 122 VVHVSTDEVYGSIDSGSWTESS----PLEP-NSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 175 MPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAV 234
N YGP HPE L+ F ++G + ++G G+ +RE++H DD +
Sbjct: 177 RCCNNYGPYQ--HPEK------LIPLFVTNLLDGGT-LPLYGDGANVREWVHTDDHCRGI 227
Query: 235 VFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTP-RKLMDSSK 293
++ E ++G G E++ +EL + +++G + V + G R +D K
Sbjct: 228 ALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGK 287
Query: 294 LAR-LGWRAKIELRDGLADTYKWYLEN 319
+ R LG+R ++ DGLA T +WY EN
Sbjct: 288 IERELGYRPQVSFADGLARTVRWYREN 314
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 139/312 (44%), Gaps = 33/312 (10%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHA--------------ELDLTRQSDVESF 63
++ V G G +GS IV LL+ G +L A +DL + VE
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERA 61
Query: 64 FAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSS-C 122
F +P++V AA+ + + P +NL N++++ +YGV+KL+F +
Sbjct: 62 FREFRPTHVSHQAAQAS-VKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGA 120
Query: 123 IYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGP 182
IY + P E A T P P + YA +K A Y Y +S N+YGP
Sbjct: 121 IYGEV---PEGERAEETWPPRPKSP-YAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGP 176
Query: 183 NDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSP-----LREFLHVDDLADAVVFM 237
+ H E ++ F E + G V ++ +P +R++++V D+A+A
Sbjct: 177 RQDPHGEA-----GVVAIFAERVLKGLP-VTLYARKTPGDEGCVRDYVYVGDVAEAHALA 230
Query: 238 MDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARL 297
+ +G+ NVG+G+ + +E+ V EA G E+ +P R ++ KL
Sbjct: 231 LFSLEGI--YNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMAH 288
Query: 298 GWRAKIELRDGL 309
GWR K+ ++G+
Sbjct: 289 GWRPKVGFQEGI 300
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 130/318 (40%), Gaps = 45/318 (14%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHA----------------ELDLTRQSDVE 61
+I + G G +GS ++ L G L++ A E +T +E
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLE 81
Query: 62 SFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSS 121
F + KP++V+ +AA + + AE A N+Q NV +A + GVK+LL ++
Sbjct: 82 RAFDSFKPTHVVHSAAA----YKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTA 137
Query: 122 CIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYG 181
Y + A PIP + P P Y I+K AG +A+ + +S N+ G
Sbjct: 138 LCYGRPATVPIP----IDSPTAPFTS-YGISKTAG----EAFLMMSDVPVVSLRLANVTG 188
Query: 182 PNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEY 241
P P +P +R + + V R+FL + D + E
Sbjct: 189 PRLAIGP-----IPTFYKRLKAGQKCFCSDTV--------RDFLDMSDFLAIADLSLQEG 235
Query: 242 DGLEHLNVGSGKEVSIKELAEWVKEAVG--FEGELVWDSSKPDGTPRKLMDSSKL-ARLG 298
NV +G+ SIKE+ + V + VG + + D P ++D SK G
Sbjct: 236 RPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFG 295
Query: 299 WRAKIELRDGLADTYKWY 316
W+AK++ +D + WY
Sbjct: 296 WKAKVDFKDTITGQLAWY 313
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 78/365 (21%)
Query: 13 SEKSAKI-FVAGHRGLVGSAIVRKLLSLGFT------------------NLLLRTHA--- 50
SE ++KI V G G +GS V +L+ G+ +L + H
Sbjct: 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFY 66
Query: 51 ELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRY 110
E+DL + +E F K VI A + + + P + N+ +++ +Y
Sbjct: 67 EVDLCDRKGLEKVFKEYKIDSVIHFAG-LKAVGESTQIPLRYYHNNILGTVVLLELMQQY 125
Query: 111 GVKKLLFLGSSCIY---PKFAPQ-PIPENALLTGPLEPTNEW----YAIAKI-----AGI 157
V K +F S+ +Y +F PIPE PL PTN + YAI I
Sbjct: 126 NVSKFVFSSSATVYGDATRFPNMIPIPEEC----PLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 158 KMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT 217
K + I FN I P+ L G + P N +LP + + V +++ ++G
Sbjct: 182 KKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNN--LLPYMA----QVAVGRREKLYIFGD 235
Query: 218 ------GSPLREFLHVDDLAD---AVVFMMDEYDGLEHL----NVGSGKEVSIKELAEWV 264
G+P+R+++HV DLA A + ++ Y+ E L N+GSGK ++ E+
Sbjct: 236 DYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAF 295
Query: 265 KEAVGFE----------GELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDGLADTYK 314
+A G + G+++ ++KPD R+L W+ ++++ D D +K
Sbjct: 296 CKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELK---------WQTELQVEDSCKDLWK 346
Query: 315 WYLEN 319
W EN
Sbjct: 347 WTTEN 351
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 34/301 (11%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRT-------HAELDLTRQSDVESFFAAEKPS 70
+I V G G +GS +V KL+ LG+ +++ AEL + D S+ A K
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDY-SWGAGIKGD 60
Query: 71 YVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQ 130
V AA + + T P N+ NV++ A + GV+ ++F SS +Y
Sbjct: 61 VVFHFAAN-PEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVI 119
Query: 131 PIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPEN 190
P PE P +P + Y AK AG MC Y + ++ N+ GP +
Sbjct: 120 PTPEEE----PYKPISV-YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP----RLRH 170
Query: 191 SHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH---- 246
+ +M+ V + V G G+ + +L+V D +A + +++ ++
Sbjct: 171 GVIYDFIMKLRRNPNV-----LEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLA 225
Query: 247 LNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDG------TPRKLMDSSKLARL-GW 299
LNVG+ V + ++A+ V E +G E+ S PDG + +KL +L GW
Sbjct: 226 LNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGW 285
Query: 300 R 300
R
Sbjct: 286 R 286
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 38/317 (11%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFT-----NL------LLRTHAELDLTRQSDVESFFAA 66
+I V G G +GS +V KL+ LG+ NL + AEL + D S+ A
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDY-SWGAG 60
Query: 67 EKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPK 126
K V AA + + T P N+ NV++ A + GV+ ++F SS +Y
Sbjct: 61 IKGDVVFHFAAN-PEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGD 119
Query: 127 FAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNF 186
P PE P +P + Y AK AG MC Y + ++ N+ GP
Sbjct: 120 ADVIPTPEEE----PYKPISV-YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP---- 170
Query: 187 HPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH 246
+ + +M+ V + V G G+ + +L+V D +A + +++ ++
Sbjct: 171 RLRHGVIYDFIMKLRRNPNV-----LEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDA 225
Query: 247 ----LNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDG------TPRKLMDSSKLAR 296
LNVG+ V + ++A+ V E +G E+ S PDG + +KL +
Sbjct: 226 PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMK 285
Query: 297 L-GWRAKIELRDGLADT 312
L GWR + + + T
Sbjct: 286 LTGWRPTMTSAEAVKKT 302
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 147/353 (41%), Gaps = 64/353 (18%)
Query: 18 KIFVAGHRGLVGSAIVRKLL-----------------------SLGFTNLLLRTHAELDL 54
KI + G G +GSA+VR ++ + +N HA D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHA--DI 59
Query: 55 TRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVK- 113
+++ F +P V+ AA+ + + T PA FI N+ +++ A +Y
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAE-SHVDRSITGPAAFIETNIVGTYALLEVARKYWSAL 118
Query: 114 --------KLLFLGSSCIYPKFAPQPIPENALLTGPL-------EPTNEWYAIAKIAGIK 158
+ + + +Y P P +T PL P++ Y+ +K +
Sbjct: 119 GEDKKNNFRFHHISTDEVYGDL-PHPDEVENSVTLPLFTETTAYAPSSP-YSASKASSDH 176
Query: 159 MCQAYQIQYKFNAISGMPTNLYGPNDNFH-PENSHVLPALMRRFHEAKVNGAKEVVVWGT 217
+ +A++ Y I +N YGP +H PE ++P ++ E K + ++G
Sbjct: 177 LVRAWRRTYGLPTIVTNCSNNYGP---YHFPEK--LIPLVILNALEGK-----PLPIYGK 226
Query: 218 GSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKE--------VSIKELAEWVKEAVG 269
G +R++L+V+D A A+ ++ E E N+G E L E V +A
Sbjct: 227 GDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATS 286
Query: 270 FEGELVWDSSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKWYLENVK 321
+ ++ + + +P R +D+ K++R LGW+ G+ T +WYL N +
Sbjct: 287 YREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 149/343 (43%), Gaps = 70/343 (20%)
Query: 19 IFVAGHRGLVGSAIVRKLLSLG----------------------FTNLLLRTHAEL-DLT 55
I + G G +GS V+KL+ G F N LR A L D+
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 56 RQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKL 115
Q ++E+ S V V+ K + NN Y A + V+D + V K
Sbjct: 64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCL-------LEVMD---EFKVDKF 113
Query: 116 LFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKM----CQAYQIQYK--- 168
+F ++ Y + I E + PTN Y K+A KM QA ++YK
Sbjct: 114 IFSSTAATYGEVDVDLITEETMTN----PTNT-YGETKLAIEKMLHWYSQASNLRYKIFR 168
Query: 169 -FNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSPL 221
FN P + G + H +H++P ++ + + ++++++G G+ +
Sbjct: 169 YFNVAGATPNGIIGED---HRPETHLIPLVL----QVALGQREKIMMFGDDYNTPDGTCI 221
Query: 222 REFLHVDDLADA-VVFMMDEYDGLEH--LNVGSGKEVSIKELAEWVKEAVGFE--GELVW 276
R+++HV+DL A + + D +G E N+G+G S+KE+ + V+E E E+
Sbjct: 222 RDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEV-- 279
Query: 277 DSSKPDGTPRKLMDSSKLA--RLGWRAK-IELRDGLADTYKWY 316
+ + G P +L+ SS+ A +LGW + + ++ + + W+
Sbjct: 280 -APRRAGDPARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWH 321
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 36/301 (11%)
Query: 19 IFVAGHRGLVGSAIVRKL-----------LSLG---FTNLLLRTHAELDLTRQSDVESFF 64
I V G G +GS +V KL LS G F N R + DL D++ +
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARL-VKADLA-ADDIKDYL 61
Query: 65 AAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIY 124
+ + I A V I A N P E N+ ++++ + GV +++F +S +Y
Sbjct: 62 KGAEEVWHIAANPDVR-IGAEN--PDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVY 118
Query: 125 PKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPND 184
+ P PE+ P P + Y +K+A + ++Y + A N+ G
Sbjct: 119 GEAKVIPTPEDY----PTHPIS-LYGASKLACEALIESYCHTFDMQAWIYRFANVIGRR- 172
Query: 185 NFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGL 244
++H ++ F +E+ + G G + ++++ D DA++F + + +
Sbjct: 173 -----STH---GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERV 224
Query: 245 EHLNVGSGKEVSIKELAEWVKEAVGFEGELVW---DSSKPDGTPRKLMDSSKLARLGWRA 301
N+GS ++ +K +AE V E +G + D P L+ KL RLGW+
Sbjct: 225 NIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKP 284
Query: 302 K 302
+
Sbjct: 285 R 285
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 129/323 (39%), Gaps = 33/323 (10%)
Query: 12 LSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRT--------------HAELDLTRQ 57
+ + +I + G G VGS + KL+ G ++ H +L
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINH 60
Query: 58 SDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLF 117
VE + Y + + A N P + + N N++ A R G + LL
Sbjct: 61 DVVEPLYIEVDQIYHLASPASPPNYMYN---PIKTLKTNTIGTLNMLGLAKRVGAR-LLL 116
Query: 118 LGSSCIYPKFAPQPIPENALLTGPLEPT--NEWYAIAKIAGIKMCQAYQIQYKFNAISGM 175
+S +Y P+ P++ G + P Y K MC AY Q
Sbjct: 117 ASTSEVYGD--PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 174
Query: 176 PTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVV 235
N +GP H + V+ + + + + + V+G+GS R F +V DL + +V
Sbjct: 175 IFNTFGPR--MHMNDGRVVSNFILQALQGE-----PLTVYGSGSQTRAFQYVSDLVNGLV 227
Query: 236 FMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLA 295
+M+ + +N+G+ +E +I E A+ +K VG E+ + S D P+K K A
Sbjct: 228 ALMNS-NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQD-DPQKRKPDIKKA 285
Query: 296 R--LGWRAKIELRDGLADTYKWY 316
+ LGW + L +GL ++
Sbjct: 286 KLMLGWEPVVPLEEGLNKAIHYF 308
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 44/330 (13%)
Query: 16 SAKIFVAGHRGLVGSAIVRKLLS------------LGFTNLLLRTHAELDLTRQSDVESF 63
S K+ V G G +GS +R +L LG+ + A L +F
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGS----NPANLKDLEDDPRYTF 58
Query: 64 FAAEKPSYVIVA--AAKVGGI-------HANNTY--PAEFIAINLQIQTNVIDSAFRYGV 112
+ Y +V KV G+ H + + P F+ N+ +++S R
Sbjct: 59 VKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP 118
Query: 113 K-KLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNA 171
+ + + + + +Y EN L P P Y+ K A + + Y NA
Sbjct: 119 EVRFVHVSTDEVYGDILKGSFTENDRLM-PSSP----YSATKAASDMLVLGWTRTYNLNA 173
Query: 172 ISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLA 231
TN YGP PE ++P + R + ++ ++GTG +R++L+V+D
Sbjct: 174 SITRCTNNYGPYQ--FPEK--LIPKTIIR-----ASLGLKIPIYGTGKNVRDWLYVEDHV 224
Query: 232 DAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELV-WDSSKPDGTPRKLMD 290
A+ ++ + + E N+ +G+E + E+ + + +G EL+ +P R +D
Sbjct: 225 RAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLD 284
Query: 291 SSKLAR-LGWRAKIELRDGLADTYKWYLEN 319
S K+ R L WR K +G+ T WYL+N
Sbjct: 285 SWKITRDLKWRPKYTFDEGIKKTIDWYLKN 314
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 123/317 (38%), Gaps = 33/317 (10%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRT--------------HAELDLTRQSDVESF 63
+I + G G VGS + KL G ++ H +L VE
Sbjct: 29 RILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 88
Query: 64 FAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCI 123
+ Y + + A N P + + N N + A R G + LL +S +
Sbjct: 89 YIEVDQIYHLASPASPPNYXYN---PIKTLKTNTIGTLNXLGLAKRVGAR-LLLASTSEV 144
Query: 124 YPKFAPQPIPENALLTGPLEPT--NEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYG 181
Y P+ P++ G + P Y K C AY Q N +G
Sbjct: 145 YGD--PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFG 202
Query: 182 PNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEY 241
P H + V+ + + + + + V+G+GS R F +V DL + +V + +
Sbjct: 203 PRX--HXNDGRVVSNFILQALQGE-----PLTVYGSGSQTRAFQYVSDLVNGLVALXNS- 254
Query: 242 DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLAR--LGW 299
+ +N+G+ +E +I E A+ +K VG E+ + S D P+K K A+ LGW
Sbjct: 255 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQD-DPQKRKPDIKKAKLXLGW 313
Query: 300 RAKIELRDGLADTYKWY 316
+ L +GL ++
Sbjct: 314 EPVVPLEEGLNKAIHYF 330
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 137/334 (41%), Gaps = 36/334 (10%)
Query: 16 SAKIFVAGHRGLVGSAIVRKLLSLGFT------NLL------LRTHAELDLTRQSDVE-S 62
+ + V G G VGS +V++LL LG NLL + H + + S + +
Sbjct: 32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDA 91
Query: 63 FFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRY-------GVKKL 115
A+ + Y V + H N + + +A + + N + + Y +KK+
Sbjct: 92 LLASLQDEYDYVF--HLATYHGNQSSIHDPLADH---ENNTLTTLKLYERLKHFKRLKKV 146
Query: 116 LFLGSSCIYPK--FAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAIS 173
++ + C + F E + L + Y+++KI G Y Q++ +
Sbjct: 147 VYSAAGCSIAEKTFDDAKATEETDIVS-LHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVR 205
Query: 174 GMPTNLYGPNDNFHPENSHVLPALMRR-----FHEAKVNGAKEVVVWGTGSPLREFLHVD 228
N+YGP + PA + R F + G + G G R+F+ V+
Sbjct: 206 ARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENG-GVATRDFIFVE 264
Query: 229 DLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKP-DGTPRK 287
D+A+ ++ + N+ SGKE SI +LA + E G EL +P D + ++
Sbjct: 265 DVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKR 324
Query: 288 LMDSSKLAR-LGWRAKIELRDGLADTYKWYLENV 320
K R LG+ A + + DGL T +W N+
Sbjct: 325 FGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 118/301 (39%), Gaps = 57/301 (18%)
Query: 18 KIFVAGHRGLVGSAIVRKLLS-----LGFTNLL------LRTHAELDLTRQSD-----VE 61
K+F+ G G +GS I LL +G N L+ H L S V
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVN 82
Query: 62 SFFAAEKPSYVIVAAAKVGGIHA--NNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLG 119
+P V+ AA N+T N +NV+ +A + V + ++
Sbjct: 83 QLIGDLQPDAVVHTAASYKDPDDWYNDTL------TNCVGGSNVVQAAKKNNVGRFVYFQ 136
Query: 120 SSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNL 179
++ Y +PI + L P P N YAI+K A + Y + ++ N+
Sbjct: 137 TALCY---GVKPIQQPVRLDHPRNPANSSYAISKSAN----EDYLEYSGLDFVTFRLANV 189
Query: 180 YGPNDNFHPENSHVLPALMRRFHEAK---VNGAKEVVVWGTGSPLREFLHVDDLADAVVF 236
GP + P LP +R E K V A+ R+F+ V DLA A V
Sbjct: 190 VGPRNVSGP-----LPIFFQRLSEGKKCFVTKAR-----------RDFVFVKDLARATVR 233
Query: 237 MMDEYDGLEH--LNVGSGKEVSIKELAEWVKEAVGFEG--ELVWDSSKPDGTPRKLMDSS 292
+ DG+ H + SG +V+IKEL + V EA+ E PD P L+D S
Sbjct: 234 AV---DGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPS 290
Query: 293 K 293
+
Sbjct: 291 R 291
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 141/348 (40%), Gaps = 62/348 (17%)
Query: 18 KIFVAGHRGLVGSAIVRKLLS-----------LGFTNLLLR----------THAELDLTR 56
KI + G G +GSA+VR +++ L + L+ ++D+
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 57 QSDVESFFAAEKPSYVIVAAAKVGGIHANNTY--PAEFIAINLQIQTNVIDSAFRY---- 110
++++ F +P V+ AA+ H + + PA FI N+ ++++A Y
Sbjct: 63 RAELARVFTEHQPDCVMHLAAES---HVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 111 -----GVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQI 165
+ + + +Y + T P P++ Y+ +K + + +A+
Sbjct: 120 TEDKKSAFRFHHISTDEVYGDL--HSTDDFFTETTPYAPSSP-YSASKASSDHLVRAWLR 176
Query: 166 QYKFNAISGMPTNLYGPNDNFH-PENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREF 224
Y + +N YGP +H PE ++P ++ K + V+G G +R++
Sbjct: 177 TYGLPTLITNCSNNYGP---YHFPEK--LIPLMI-----LNALAGKSLPVYGNGQQIRDW 226
Query: 225 LHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKE------------AVGFEG 272
L+V+D A A+ + E N+G E ++ E + E +
Sbjct: 227 LYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRD 286
Query: 273 ELVWDSSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKWYLEN 319
+ + + +P R +D+SK+AR LG + G+ T +WYL N
Sbjct: 287 LITFVADRPGHDLRYAIDASKIARELGCVPQETFESGMRKTVQWYLAN 334
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTH---------------------------A 50
K+ V G G +GS V +LL G+ +++
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 51 ELDLTRQSDVESFFAAEKPSYV-IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFR 109
E+D+ Q ++ F +K S++ ++ A + + + P ++ +NL +++
Sbjct: 64 EMDILDQGALQRLF--KKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 121
Query: 110 YGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----- 164
+GVK L+F S+ +Y P+ E G P + + +CQA +
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAV 181
Query: 165 -IQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------ 217
++Y FN + G + P N LM + + + + V+G
Sbjct: 182 LLRY-FNPTGAHASGCIGEDPQGIPNN------LMPYVSQVAIGRREALNVFGNDYDTED 234
Query: 218 GSPLREFLHVDDLAD---AVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVG--FEG 272
G+ +R+++HV DLA A + + E G N+G+G S+ ++ + +++A G
Sbjct: 235 GTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Query: 273 ELVWDSSKPDGTPRKLMDSSKLAR--LGWRAKIELRDGLADTYKWYLEN 319
++V ++ +G + LA+ LGW A + L D ++W +N
Sbjct: 295 KVV---ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQN 340
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTH---------------------------A 50
K+ V G G +GS V +LL G+ +++
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 51 ELDLTRQSDVESFFAAEKPSYV-IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFR 109
E+D+ Q ++ F +K S++ ++ A + + + P ++ +NL +++
Sbjct: 64 EMDILDQGALQRLF--KKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 121
Query: 110 YGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----- 164
+GVK L+F S+ +Y P+ E G P + + +CQA +
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVV 181
Query: 165 -IQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------ 217
++Y FN + G + P N LM + + + + V+G
Sbjct: 182 LLRY-FNPTGAHASGCIGEDPQGIPNN------LMPYVSQVAIGRREALNVFGNDYDTED 234
Query: 218 GSPLREFLHVDDLAD---AVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVG--FEG 272
G+ +R+++HV DLA A + + E G N+G+G S+ ++ + +++A G
Sbjct: 235 GTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Query: 273 ELVWDSSKPDGTPRKLMDSSKLAR--LGWRAKIELRDGLADTYKWYLEN 319
++V ++ +G + LA+ LGW A + L D ++W +N
Sbjct: 295 KVV---ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQN 340
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 137/351 (39%), Gaps = 63/351 (17%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTH---------------------------A 50
K+ V G G +GS V +LL G+ +++
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 51 ELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANN---TYPAEFIAINLQIQTNVIDSA 107
E+D+ Q ++ F Y +A G+ A P ++ +NL +++
Sbjct: 64 EMDILDQGALQRLFK----KYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 108 FRYGVKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ--- 164
+GVK L+F S+ +Y P+ E G P + + +CQA +
Sbjct: 120 KAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 165 ---IQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT---- 217
++Y FN + G + P N LM + + + + V+G
Sbjct: 180 VVLLRY-FNPTGAHASGCIGEDPQGIPNN------LMPYVSQVAIGRREALNVFGNDYDT 232
Query: 218 --GSPLREFLHVDDLAD---AVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVG--F 270
G+ +R+++HV DLA A + + E G N+G+G S+ ++ + +++A G
Sbjct: 233 EDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKI 292
Query: 271 EGELVWDSSKPDGTPRKLMDSSKLAR--LGWRAKIELRDGLADTYKWYLEN 319
++V ++ +G + LA+ LGW A + L D ++W +N
Sbjct: 293 PYKVV---ARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQN 340
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 152/373 (40%), Gaps = 84/373 (22%)
Query: 18 KIFVAGHRGLVGSAIVRKLL-----SLGFTNLLLRTHAELDL--TRQSDVESFFAAE--K 68
++ V G G +GS VR LL S+ + L+ TH + D TR++ ++ K
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 69 PSYV-IVAAAKVGGIHANN---------------TYPAEFIAINLQIQ-------TNVI- 104
P + AA +VG + + + F+A+ ++ NV+
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 105 -----DSAFRYGVKKLLFLGSSCIY--PKFAP-----QPIPENALLTGPLEPTNEWYAIA 152
+ + K++F S+ I+ P +PI NA + P P E IA
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKS-PESPYGESKLIA 182
Query: 153 KIAGIKMCQAYQIQ----YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRR-------- 200
+ +AY I+ FNA G + ++H++P ++ R
Sbjct: 183 ERMIRDCAEAYGIKGICLRYFNACGAHEDGDIG---EHYQGSTHLIPIILGRVMSDIAPD 239
Query: 201 ----FHEAKVNGAKEVVVWGT------GSPLREFLHVDDLADAVVFMMDEYDGL------ 244
HE + K + ++GT G+ +R+++HV DLA A + +D + L
Sbjct: 240 QRLTIHE-DASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKS 298
Query: 245 ---EHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLAR--LGW 299
N+G+ + S++E+ E ++ G V + + +G P L+ +S AR LGW
Sbjct: 299 KYFSVFNLGTSRGYSVREVIEVARKTTGHPIP-VRECGRREGDPAYLVAASDKAREVLGW 357
Query: 300 RAKIELRDGLADT 312
+ K + + + +T
Sbjct: 358 KPKYDTLEAIMET 370
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 20/224 (8%)
Query: 112 VKKLLFLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAG--IKMCQAYQIQYK- 168
VK+++F S+ +Y PI E T PL TN + +A ++ +A ++
Sbjct: 121 VKRIVFSSSATVYGVPERSPIDE----TFPLSATNPYGQTKLMAEQILRDVEAADPSWRV 176
Query: 169 -----FNAISGMPTNLYGPNDNFHPEN--SHVLPALMRRFHEAKVNGAKEVVVWGTGSPL 221
FN + + L G + P N +V + + + +V G+ GTG +
Sbjct: 177 ATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTG--V 234
Query: 222 REFLHVDDLADAVVFMMD---EYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDS 278
R+++HV DLA + +D D +N+G+G+ S+ E+ ++A G +
Sbjct: 235 RDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVA 294
Query: 279 SKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKWYLENVK 321
+P + + A +GW+A+ +L AD ++W N +
Sbjct: 295 RRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 125/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F S+ +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 125/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F S+ +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 125/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F S+ +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/334 (19%), Positives = 124/334 (37%), Gaps = 43/334 (12%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAK--IAGIKMCQ---AYQIQYKFNA 171
F S+ +Y P E+ P P + + + + ++ Q + + FN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 172 ISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSPLREFL 225
+ P+ G + P N LM + V + ++G G+ +R+++
Sbjct: 181 VGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 226 HVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPD 282
HV DLAD V M++ G+ N+G+G S+ ++ +A G + +
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREG 294
Query: 283 GTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
P D+SK R L WR L + DT+ W
Sbjct: 295 DLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 12/181 (6%)
Query: 141 PLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRR 200
PL P N Y+ +K + + AY Y+ I +N YGP +PE ++P +
Sbjct: 167 PLAP-NSPYSSSKASADXIALAYYKTYQLPVIVTRCSNNYGPYQ--YPEK--LIPLXVTN 221
Query: 201 FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKEL 260
E K ++ ++G G +R++LHV D A+ ++ + E N+G E + E+
Sbjct: 222 ALEGK-----KLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEV 276
Query: 261 AEWVKEAVG-FEGELVWDSSKPDGTPRKLMDSSKLA-RLGWRAKIELRDGLADTYKWYLE 318
E + +G + ++ + + + R +++ K W K GL +T +WY +
Sbjct: 277 VEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKXKNEFDWEPKYTFEQGLQETVQWYEK 336
Query: 319 N 319
N
Sbjct: 337 N 337
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/339 (20%), Positives = 125/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F ++ +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSTATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/339 (20%), Positives = 125/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F ++ +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSAATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 20/258 (7%)
Query: 73 IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQP- 131
++ A +G + + P A N+ N++ +A V+ + SS Y P
Sbjct: 117 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPK 176
Query: 132 IPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENS 191
+ EN + PL P YA+ K Q Y Y F I N++G + + +
Sbjct: 177 VEEN--IGNPLSP----YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYA 230
Query: 192 HVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNV 249
V+P ++ A + G +V + G G R+F ++D++ + D + NV
Sbjct: 231 AVIP----KWTAAMLKG-DDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNV 285
Query: 250 GSGKEVSIKELAEWVKEAVGF-----EGELVWDSSKPDGTPRKLMDSSK-LARLGWRAKI 303
G ++ EL+ ++ + + + + + + D +K + L +R I
Sbjct: 286 AVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNI 345
Query: 304 ELRDGLADTYKWYLENVK 321
++R+GL + WY+ +K
Sbjct: 346 KIREGLRLSMPWYVRFLK 363
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 20/258 (7%)
Query: 73 IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQP- 131
++ A +G + + P A N+ N++ +A V+ + SS Y P
Sbjct: 104 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPK 163
Query: 132 IPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENS 191
+ EN + PL P YA+ K Q Y Y F I N++G + + +
Sbjct: 164 VEEN--IGNPLSP----YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYA 217
Query: 192 HVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNV 249
V+P ++ A + G +V + G G R+F ++D++ + D + NV
Sbjct: 218 AVIP----KWTAAMLKG-DDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNV 272
Query: 250 GSGKEVSIKELAEWVKEAVGF-----EGELVWDSSKPDGTPRKLMDSSK-LARLGWRAKI 303
G ++ EL+ ++ + + + + + + D +K + L +R I
Sbjct: 273 AVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNI 332
Query: 304 ELRDGLADTYKWYLENVK 321
++R+GL + WY+ +K
Sbjct: 333 KIREGLRLSMPWYVRFLK 350
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 20/258 (7%)
Query: 73 IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQP- 131
++ A +G + + P A N+ N++ +A V+ + SS Y P
Sbjct: 98 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPK 157
Query: 132 IPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENS 191
+ EN + PL P YA+ K Q Y Y F I N++G + + +
Sbjct: 158 VEEN--IGNPLSP----YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYA 211
Query: 192 HVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNV 249
V+P ++ A + G +V + G G R+F ++D++ + D + NV
Sbjct: 212 AVIP----KWTAAMLKG-DDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNV 266
Query: 250 GSGKEVSIKELAEWVKEAVGF-----EGELVWDSSKPDGTPRKLMDSSK-LARLGWRAKI 303
G ++ EL+ ++ + + + + + + D +K + L +R I
Sbjct: 267 AVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNI 326
Query: 304 ELRDGLADTYKWYLENVK 321
++R+GL + WY+ +K
Sbjct: 327 KIREGLRLSMPWYVRFLK 344
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/339 (20%), Positives = 125/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F ++ +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSAATVYGDQPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/334 (19%), Positives = 124/334 (37%), Gaps = 43/334 (12%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAK--IAGIKMCQ---AYQIQYKFNA 171
F ++ +Y P E+ P P + + + + ++ Q + + FN
Sbjct: 121 FSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 172 ISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSPLREFL 225
+ P+ G + P N LM + V + ++G G+ +R+++
Sbjct: 181 VGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 226 HVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPD 282
HV DLAD V M++ G+ N+G+G S+ ++ +A G + +
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREG 294
Query: 283 GTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
P D+SK R L WR L + DT+ W
Sbjct: 295 DLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/334 (19%), Positives = 124/334 (37%), Gaps = 43/334 (12%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAK--IAGIKMCQ---AYQIQYKFNA 171
F ++ +Y P E+ P P + + + + ++ Q + + FN
Sbjct: 121 FSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 172 ISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSPLREFL 225
+ P+ G + P N LM + V + ++G G+ +R+++
Sbjct: 181 VGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234
Query: 226 HVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPD 282
HV DLAD V M++ G+ N+G+G S+ ++ +A G + +
Sbjct: 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREG 294
Query: 283 GTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
P D+SK R L WR L + DT+ W
Sbjct: 295 DLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 20/258 (7%)
Query: 73 IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQP- 131
++ A +G + + P A N+ N++ +A V+ + SS Y P
Sbjct: 104 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPK 163
Query: 132 IPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENS 191
+ EN + PL P YA+ K Q Y Y F I N++G + + +
Sbjct: 164 VEEN--IGNPLSP----YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYA 217
Query: 192 HVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNV 249
V+P ++ A + G +V + G G R+F ++D++ + D + NV
Sbjct: 218 AVIP----KWTAAMLKG-DDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNV 272
Query: 250 GSGKEVSIKELAEWVKEAVGF-----EGELVWDSSKPDGTPRKLMDSSK-LARLGWRAKI 303
G ++ EL+ ++ + + + + + + D +K + L +R I
Sbjct: 273 AVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRASQADVTKAIDLLKYRPNI 332
Query: 304 ELRDGLADTYKWYLENVK 321
++R+GL + WY+ +K
Sbjct: 333 KIREGLRLSMPWYVRFLK 350
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/339 (20%), Positives = 124/339 (36%), Gaps = 53/339 (15%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYV----- 72
++ V G G +GS +LL G ++L + +E + P++V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIR 60
Query: 73 ----------------IVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
++ A + + + P E+ N+ +I + VK +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ----------IQ 166
F + +Y P E+ P P Y +K+ ++ Q ++
Sbjct: 121 FSSVATVYGDNPKIPYVESFPTGTPQSP----YGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 167 YKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGT------GSP 220
Y FN + P+ G + P N LM + V + ++G G+
Sbjct: 177 Y-FNPVGAHPSGDMGEDPQGIPNN------LMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 221 LREFLHVDDLADAVVFMMDEY---DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWD 277
+R+++HV DLAD V M++ G+ N+G+G S+ ++ +A G +
Sbjct: 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFA 289
Query: 278 SSKPDGTPRKLMDSSKLAR-LGWRAKIELRDGLADTYKW 315
+ P D+SK R L WR L + DT+ W
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 127/333 (38%), Gaps = 63/333 (18%)
Query: 16 SAKIFVAGHRGLVGSAIVRKLLSLGFTNLLL----------------RTHAELDLTRQ-S 58
S KI V G G +G +V + + G T ++L + DL Q +
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLN 61
Query: 59 DVESF--FAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
DV++ AA + S K+ H N + N+ D+ + + ++
Sbjct: 62 DVDAVVHLAATRGS-----QGKISEFHDNEI-----------LTQNLYDACYENNISNIV 105
Query: 117 FLGSSCIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMP 176
+ + Y P E L PL Y ++K+A + Y + +
Sbjct: 106 YASTISAYSDETSLPWNEKEL---PLPDL--XYGVSKLACEHIGNIYSRKKGLCIKNLRF 160
Query: 177 TNLYGPNDNFHPENSHVLPALMRR-FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVV 235
+LYG F+ +N++ + R+ FH +++ + REFL+ D A +V+
Sbjct: 161 AHLYG----FNEKNNYXINRFFRQAFH------GEQLTLHANSVAKREFLYAKDAAKSVI 210
Query: 236 FMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGE-LVWDSSKPDGTPRKLMDSSKL 294
+ + + N+GSG ++ E+A + A G + LV + + +G DSSK
Sbjct: 211 YALKQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKA 270
Query: 295 ARL-------GWRAKIE----LRDGLADTYKWY 316
L + +E L GL D WY
Sbjct: 271 KELLDFSTDYNFATAVEEIHLLXRGLDDVPLWY 303
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 27/221 (12%)
Query: 111 GVKKLLFLGSSC-IYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKF 169
GV K++ +GS+C +Y + P PE++ PL P + YA +K+ G++M +
Sbjct: 110 GVPKVV-VGSTCEVYGQADTLPTPEDS----PLSPRSP-YAASKV-GLEMVAGAHQRASV 162
Query: 170 NAISGMPT--NLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHV 227
G+ N+YGP + P+ AL+ R A + E+ V G G R+F ++
Sbjct: 163 APEVGIVRFFNVYGPGE--RPD------ALVPRLC-ANLLTRNELPVEGDGEQRRDFTYI 213
Query: 228 DDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRK 287
D+ D +V + + +N GSG+ +S+ ++ + +A E+ +P+
Sbjct: 214 TDVVDKLVALANR-PLPSVVNFGSGQSLSVNDVIR-ILQATSPAAEVARKQPRPNEITEF 271
Query: 288 LMDSSKLAR-LGWRA-KIELRDGLADTYKWY----LENVKQ 322
D++ R +G R+ I + +G+ T +W+ L++++Q
Sbjct: 272 RADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDLDDIRQ 312
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 16 SAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSD-----VESFFAAEKPS 70
S I V G G VG A+V L + G RT DL V S + S
Sbjct: 19 SHMILVTGSAGRVGRAVVAALRTQG------RTVRGFDLRPSGTGGEEVVGSLEDGQALS 72
Query: 71 YVIVAAAKVGGIHANNTY-PAE---FIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPK 126
I+ + V + A ++ PA+ A+N++ ++D+A GV++ +F S +YP+
Sbjct: 73 DAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPE 132
Query: 127 FAPQ--PIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQ 164
P+ P+ E+ PL P N Y + K+ G ++ + +Q
Sbjct: 133 NRPEFLPVTEDH----PLCP-NSPYGLTKLLGEELVRFHQ 167
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 149 YAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNG 208
Y+ K A + +A+ + A +N YGP H+ + R+ +
Sbjct: 161 YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY-------QHIEKFIPRQI--TNILA 211
Query: 209 AKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAV 268
+ ++G G +R+++H +D + V ++ + E +G+ E + KE+ E + E +
Sbjct: 212 GIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKM 271
Query: 269 GFEGELVWD--SSKPDGTPRKLMDSSKLA-RLGWRAKI-ELRDGLADTYKWYLEN 319
G + + +D + + R +D+SKL LGW + + +GL +T +WY +N
Sbjct: 272 G-QPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDN 325
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 29/285 (10%)
Query: 9 CSFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEK 68
L EK +++ A R G +L LG N + H +DL S++ +
Sbjct: 20 AKLLLEKGYEVYGADRRS--GEFASWRLKELGIENDVKIIH--MDLLEFSNIIRTIEKVQ 75
Query: 69 PS--YVIVAAAKVGGIHANNTYPAEFIAINL-----QIQTNVIDSAFRYGVKKLLFLGSS 121
P Y + A + VG AE AI + ++T D+ F +S
Sbjct: 76 PDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQA-------STS 128
Query: 122 CIYPKFAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYG 181
++ K Q IP+ P P + YA+AK+ G + Y+ Y A SG+ N
Sbjct: 129 EMFGKV--QEIPQTE--KTPFYPRSP-YAVAKLFGHWITVNYREAYNMFACSGILFNHES 183
Query: 182 PNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEY 241
P + +L R + G ++ +V G + R++ + + +A+ MM +
Sbjct: 184 PLRGIEFVTRKITYSLARIKY-----GLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQP 238
Query: 242 DGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPR 286
+ +++ + +G+ +++E E + GF+ E V + G R
Sbjct: 239 EPDDYV-IATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDR 282
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 18 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAA 77
KI + G G +G I ++L ++ +LD+T V FF +KP+ VI AA
Sbjct: 14 KILITGANGQLGREIQKQLKGKN-VEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA 72
Query: 78 KVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPE 134
Y + IN N+ +A+ G +++ + + ++ A +PI E
Sbjct: 73 HTAVDKCEEQYDLAY-KINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITE 127
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 178 NLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFM 237
N+YGP + + + + ++ L KEV ++ G LR+F++++D+ A V
Sbjct: 188 NVYGPREFYKEKTASMVLQLA-----LGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKA 242
Query: 238 MD-EYDGLEHLNVGSGKEVSIKELAEWVKEAVG 269
M + G+ NVG + S E+ +KE +G
Sbjct: 243 MKAQKSGV--YNVGYSQARSYNEIVSILKEHLG 273
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 138/351 (39%), Gaps = 52/351 (14%)
Query: 13 SEKSAKIFVAGHRGLVGSAIVRKLL-------------SLGFTNLLLRTH---AELDLTR 56
+ + ++ + G G +G+ + +LL S + L H E D++
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI 69
Query: 57 QSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
S+ + K V++ + P ++ + +I +Y K+++
Sbjct: 70 HSEWIEYHV--KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRII 126
Query: 117 FLGSSCIYPKFAPQPIPENA--LLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
F +S +Y + + E+ L+ GP+ Y+++K ++ AY +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 175 MPTNLYGPN-DNFHPE---NSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDL 230
P N GP DN + +S + L+ V G+ ++ G G R F + D
Sbjct: 187 RPFNWMGPRLDNLNAARIGSSRAITQLILNL----VEGSPIKLIDG-GKQKRCFTDIRDG 241
Query: 231 ADAVVFMMD----EYDGLEHLNVGSGK-EVSIKELAEWVKEAVG----------FEGELV 275
+A+ +++ DG E +N+G+ + E SI+EL E + + F G V
Sbjct: 242 IEALYRIIENAGNRCDG-EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 300
Query: 276 WDSSK------PDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLENV 320
+SS D RK + L W KI++++ + +T ++L V
Sbjct: 301 VESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 351
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/351 (19%), Positives = 140/351 (39%), Gaps = 52/351 (14%)
Query: 13 SEKSAKIFVAGHRGLVGSAIVRKLL-------------SLGFTNLLLRTH---AELDLTR 56
+ + ++ + G G +G+ + +LL S + L H E D++
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI 69
Query: 57 QSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
S+ + K V++ + P ++ + +I +Y K+++
Sbjct: 70 HSEWIEYHV--KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRII 126
Query: 117 FLGSSCIYPKFAPQPIPENA--LLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
F +S +Y + + E+ L+ GP+ Y+++K ++ AY +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 175 MPTNLYGPN-DNFHPE---NSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDL 230
P N GP DN + +S + L+ V G+ ++ G G R F + D
Sbjct: 187 RPFNWMGPRLDNLNAARIGSSRAITQLILNL----VEGSPIKLIDG-GKQKRCFTDIRDG 241
Query: 231 ADAVVFMMD----EYDGLEHLNVGSGK-EVSIKELAEWVKEAVG----------FEGELV 275
+A+ +++ DG E +N+G+ + E SI+EL E + + F G V
Sbjct: 242 IEALYRIIENAGNRCDG-EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 300
Query: 276 WDSSKPDGTPRKLMDSSKLA------RLGWRAKIELRDGLADTYKWYLENV 320
+SS G + ++ K + L W KI++++ + +T ++L V
Sbjct: 301 VESSSYYGKGYQDVEHEKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 351
>pdb|2EGH|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
pdb|2EGH|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
Length = 424
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE + DLA M
Sbjct: 158 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE-TPLRDLA-----TM 211
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
H N G+++S+ A W+ A + E++ + +
Sbjct: 212 TPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVR 271
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + ++R +A T W
Sbjct: 272 YQDGSVLAQLG---EPDMRTPIAHTMAW 296
>pdb|3ANL|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANL|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANN|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
pdb|3ANN|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
Length = 420
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE + DLA M
Sbjct: 158 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE-TPLRDLA-----TM 211
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
H N G+++S+ A W+ A + E++ + +
Sbjct: 212 TPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVR 271
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + ++R +A T W
Sbjct: 272 YQDGSVLAQLG---EPDMRTPIAHTMAW 296
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 69/351 (19%), Positives = 140/351 (39%), Gaps = 52/351 (14%)
Query: 13 SEKSAKIFVAGHRGLVGSAIVRKLL-------------SLGFTNLLLRTH---AELDLTR 56
+ + ++ + G G +G+ + +LL S + L H E D++
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI 69
Query: 57 QSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
S+ + K V++ + P ++ + +I +Y K+++
Sbjct: 70 HSEWIEYHV--KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRII 126
Query: 117 FLGSSCIYPKFAPQPIPENA--LLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
F +S +Y + + E+ L+ GP+ Y+++K ++ AY +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 175 MPTNLYGPN-DNFHPE---NSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDL 230
P N GP DN + +S + L+ V G+ ++ G G R F + D
Sbjct: 187 RPFNWMGPRLDNLNAARIGSSRAITQLILNL----VEGSPIKLIDG-GKQKRCFTDIRDG 241
Query: 231 ADAVVFMMD----EYDGLEHLNVGSGK-EVSIKELAEWVKEAVG----------FEGELV 275
+A+ +++ DG E +N+G+ + E SI+EL E + + F G V
Sbjct: 242 IEALYRIIENAGNRCDG-EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 300
Query: 276 WDSSKPDGTPRKLMDSSKLA------RLGWRAKIELRDGLADTYKWYLENV 320
+SS G + ++ K + L W KI++++ + +T ++L V
Sbjct: 301 VESSSYYGKGYQDVEHMKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 351
>pdb|1T1R|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1R|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
Length = 398
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE + DLA M
Sbjct: 148 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE-TPLRDLA-----TM 201
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
H N G+++S+ A W+ A + E++ + +
Sbjct: 202 TPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVR 261
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + ++R +A T W
Sbjct: 262 YQDGSVLAQLG---EPDMRTPIAHTMAW 286
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 54/360 (15%)
Query: 4 SNKDSCSFLSEKSAKIFVAGHRGLVGSAIVRKLL-------------SLGFTNLLLRTH- 49
+++ +C+ + + ++ + G G +G+ + +LL S + L H
Sbjct: 305 NSQPACT--ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHF 362
Query: 50 --AELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSA 107
E D++ S+ + K V++ + P ++ + +I
Sbjct: 363 HFVEGDISIHSEWIEYHV--KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 420
Query: 108 FRYGVKKLLFLGSSCIYPKFAPQPIPENA--LLTGPLEPTNEWYAIAKIAGIKMCQAYQI 165
+Y K+++F +S +Y + + E+ L+ GP+ Y+++K ++ AY
Sbjct: 421 VKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGE 479
Query: 166 QYKFNAISGMPTNLYGPN-DNFHPE---NSHVLPALMRRFHEAKVNGAKEVVVWGTGSPL 221
+ P N GP DN + +S + L+ V G+ ++ G G
Sbjct: 480 KEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNL----VEGSPIKLIDG-GKQK 534
Query: 222 REFLHVDDLADAVVFMMD----EYDGLEHLNVGSGK-EVSIKELAEWVKEAV-------- 268
R F + D +A+ +++ DG E +N+G+ + E SI+EL E + +
Sbjct: 535 RCFTDIRDGIEALYRIIENAGNRCDG-EIINIGNPENEASIEELGEMLLASFEKHPLRHH 593
Query: 269 --GFEGELVWDSSK------PDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLENV 320
F G V +SS D RK + L W KI++++ + +T ++L V
Sbjct: 594 FPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653
>pdb|1Q0L|A Chain A, Crystal Structure Of Dxr In Complex With Fosmidomycin
pdb|1Q0Q|A Chain A, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
pdb|1Q0Q|B Chain B, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
Length = 406
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE + DLA M
Sbjct: 156 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE-TPLRDLA-----TM 209
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
H N G+++S+ A W+ A + E++ + +
Sbjct: 210 TPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVR 269
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + ++R +A T W
Sbjct: 270 YQDGSVLAQLG---EPDMRTPIAHTMAW 294
>pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|B Chain B, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|C Chain C, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1ONN|A Chain A, Ispc Apo Structure
pdb|1ONN|B Chain B, Ispc Apo Structure
pdb|1ONO|A Chain A, Ispc Mn2+ Complex
pdb|1ONO|B Chain B, Ispc Mn2+ Complex
pdb|1ONP|A Chain A, Ispc Complex With Mn2+ And Fosmidomycin
pdb|1ONP|B Chain B, Ispc Complex With Mn2+ And Fosmidomycin
Length = 398
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE + DLA M
Sbjct: 148 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE-TPLRDLA-----TM 201
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
H N G+++S+ A W+ A + E++ + +
Sbjct: 202 TPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVR 261
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + ++R +A T W
Sbjct: 262 YQDGSVLAQLG---EPDMRTPIAHTMAW 286
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 69/351 (19%), Positives = 140/351 (39%), Gaps = 52/351 (14%)
Query: 13 SEKSAKIFVAGHRGLVGSAIVRKLL-------------SLGFTNLLLRTH---AELDLTR 56
+ + ++ + G G +G+ + +LL S + L H E D++
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI 69
Query: 57 QSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
S+ + K V++ + P ++ + +I +Y K+++
Sbjct: 70 HSEWIEYHV--KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRII 126
Query: 117 FLGSSCIYPKFAPQPIPENA--LLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
F +S +Y + + E+ L+ GP+ Y+++K ++ AY +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 175 MPTNLYGPN-DNFHPE---NSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDL 230
P N GP DN + +S + L+ V G+ ++ G G R F + D
Sbjct: 187 RPFNWMGPRLDNLNAARIGSSRAITQLILNL----VEGSPIKLIDG-GKQKRCFTDIRDG 241
Query: 231 ADAVVFMMD----EYDGLEHLNVGSGK-EVSIKELAEWVKEAVG----------FEGELV 275
+A+ +++ DG E +N+G+ + E SI+EL E + + F G V
Sbjct: 242 IEALYRIIENAGNRCDG-EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 300
Query: 276 WDSSKPDGTPRKLMDSSKLA------RLGWRAKIELRDGLADTYKWYLENV 320
+SS G + ++ K + L W KI++++ + +T ++L V
Sbjct: 301 VESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 351
>pdb|3R0I|A Chain A, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
pdb|3R0I|B Chain B, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
Length = 410
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE + DLA M
Sbjct: 160 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE-TPLRDLA-----TM 213
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
H N G+++S+ A W+ A + E++ + +
Sbjct: 214 TPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVR 273
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + ++R +A T W
Sbjct: 274 YQDGSVLAQLG---EPDMRTPIAHTMAW 298
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 34/259 (13%)
Query: 89 PAEFIAINLQIQTNVIDSAFRYGVKKLLFLGSSCIYPKFAPQPIPENA--LLTGPLEPTN 146
P ++ + +I +Y K+++F +S +Y + + E+ L+ GP+
Sbjct: 87 PLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 145
Query: 147 EWYAIAKIAGIKMCQAYQIQYKFNAISGMPTNLYGPN-DNFHPE---NSHVLPALMRRFH 202
Y+++K ++ AY + P N GP DN + +S + L+
Sbjct: 146 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNL- 204
Query: 203 EAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMD----EYDGLEHLNVGSGK-EVSI 257
V G+ ++ G G R F + D +A+ +++ DG E +N+G+ + E SI
Sbjct: 205 ---VEGSPIKLIDG-GKQKRCFTDIRDGIEALYRIIENAGNRCDG-EIINIGNPENEASI 259
Query: 258 KELAEWVKEAVG----------FEGELVWDSSK------PDGTPRKLMDSSKLARLGWRA 301
+EL E + + F G V +SS D RK + L W
Sbjct: 260 EELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEP 319
Query: 302 KIELRDGLADTYKWYLENV 320
KI++++ + +T ++L V
Sbjct: 320 KIDMQETIDETLDFFLRTV 338
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 69/351 (19%), Positives = 138/351 (39%), Gaps = 52/351 (14%)
Query: 13 SEKSAKIFVAGHRGLVGSAIVRKLL-------------SLGFTNLLLRTH---AELDLTR 56
+ + ++ + G G +G+ + +LL S + L H E D++
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI 69
Query: 57 QSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFRYGVKKLL 116
S+ + K V++ + P ++ + +I +Y K+++
Sbjct: 70 HSEWIEYHV--KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRII 126
Query: 117 FLGSSCIYPKFAPQPIPENA--LLTGPLEPTNEWYAIAKIAGIKMCQAYQIQYKFNAISG 174
F ++ +Y + + E+ L+ GP+ Y+++K ++ AY +
Sbjct: 127 FPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 175 MPTNLYGPN-DNFHPE---NSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDL 230
P N GP DN + +S + L+ V G+ ++ G G R F + D
Sbjct: 187 RPFNWMGPRLDNLNAARIGSSRAITQLILNL----VEGSPIKLIDG-GKQKRCFTDIRDG 241
Query: 231 ADAVVFMMD----EYDGLEHLNVGSGK-EVSIKELAEWVKEAVG----------FEGELV 275
+A+ +++ DG E +N+G+ + E SI+EL E + + F G V
Sbjct: 242 IEALYRIIENAGNRCDG-EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV 300
Query: 276 WDSSK------PDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLENV 320
+SS D RK + L W KI++++ + +T ++L V
Sbjct: 301 VESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 351
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 185 NFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFM 237
+ H E S + L R ++ K GAK VV G+PL +V D D V+ M
Sbjct: 96 SVHCEQSSTI-HLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIM 147
>pdb|1Q0H|A Chain A, Crystal Structure Of Selenomethionine-Labelled Dxr In
Complex With Fosmidomycin
Length = 406
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE L D
Sbjct: 156 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE----TPLRDLATXTP 211
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
D+ H N G+++S+ A W+ A + E++ + +
Sbjct: 212 DQ--ACRHPNWSXGRKISVDSATXXNKGLEYIEARWLFNASASQXEVLIHPQSVIHSXVR 269
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + + R +A T W
Sbjct: 270 YQDGSVLAQLG---EPDXRTPIAHTXAW 294
>pdb|1JVS|A Chain A, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
pdb|1JVS|B Chain B, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
Length = 400
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 182 PNDNFHPENSHVLPALMRR---FHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMM 238
P D+ H LP ++ + + + NG +++ G+G P RE L D
Sbjct: 148 PVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRE----TPLRDLATXTP 203
Query: 239 DEYDGLEHLNVGSGKEVSIKEL-----------AEWVKEAVGFEGELVWDSSKPDGTPRK 287
D+ H N G+++S+ A W+ A + E++ + +
Sbjct: 204 DQ--ACRHPNWSXGRKISVDSATXXNKGLEYIEARWLFNASASQXEVLIHPQSVIHSXVR 261
Query: 288 LMDSSKLARLGWRAKIELRDGLADTYKW 315
D S LA+LG + + R +A T W
Sbjct: 262 YQDGSVLAQLG---EPDXRTPIAHTXAW 286
>pdb|2QYV|A Chain A, Crystal Structure Of Putative Xaa-His Dipeptidase
(Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
Resolution
pdb|2QYV|B Chain B, Crystal Structure Of Putative Xaa-His Dipeptidase
(Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
Resolution
Length = 487
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 50 AELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFR 109
AEL LT + + + EKP V + IH N P + N + NV++++
Sbjct: 291 AELALTEPNLIFTLEKVEKPQQVFSSQCTKNIIHCLNVLPNGVVR-NSDVIENVVETSLS 349
Query: 110 YGVKK 114
GV K
Sbjct: 350 IGVLK 354
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 14 EKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAE 51
EK KI + G G VGSA++ + L+ GF + H E
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE 39
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 178 NLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFM 237
N+YGP + + V L + + NG + G+ + R+F++V D+AD ++
Sbjct: 169 NVYGPREGHKGSMASVAFHLNTQLN----NGESPKLFEGSENFKRDFVYVGDVADVNLWF 224
Query: 238 MDEYDGLEHL-NVGSGKEVSIKELAE 262
++ +G+ + N+G+G+ S + +A+
Sbjct: 225 LE--NGVSGIFNLGTGRAESFQAVAD 248
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 178 NLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVV-F 236
N+YGP + + V L + + NG + G+ + R+F++V D+AD + F
Sbjct: 216 NVYGPREGHKGSMASVAFHLNTQLN----NGESPKLFEGSENFKRDFVYVGDVADVNLWF 271
Query: 237 MMDEYDGLEHLNVGSGKEVSIKELAE 262
+ + G+ N+G+G+ S + +A+
Sbjct: 272 LENGVSGI--FNLGTGRAESFQAVAD 295
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 205 KVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKE 254
KV A+ ++G +P + + AD + +DEY G H+ V G +
Sbjct: 168 KVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGAD 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,957,378
Number of Sequences: 62578
Number of extensions: 427913
Number of successful extensions: 1119
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 86
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)