Query 020732
Match_columns 322
No_of_seqs 237 out of 1045
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 1E-72 2.2E-77 522.5 23.7 285 22-322 9-298 (302)
2 COG5539 Predicted cysteine pro 100.0 6.6E-33 1.4E-37 256.6 7.7 279 21-320 7-305 (306)
3 PF02338 OTU: OTU-like cystein 99.9 8.1E-27 1.7E-31 192.7 6.8 119 177-316 1-121 (121)
4 KOG3288 OTU-like cysteine prot 99.7 1E-17 2.2E-22 153.2 6.0 121 171-320 110-231 (307)
5 PF10275 Peptidase_C65: Peptid 99.6 4.4E-16 9.5E-21 144.5 7.0 102 203-321 139-244 (244)
6 KOG3991 Uncharacterized conser 99.6 2.9E-15 6.2E-20 135.4 8.3 98 203-322 156-256 (256)
7 KOG2605 OTU (ovarian tumor)-li 99.4 3.5E-13 7.6E-18 131.6 5.5 134 159-321 206-343 (371)
8 COG5539 Predicted cysteine pro 98.9 7.6E-10 1.6E-14 103.7 2.0 111 177-320 118-230 (306)
9 PF05415 Peptidase_C36: Beet n 90.9 0.44 9.6E-06 37.9 4.5 65 176-277 3-69 (104)
10 PF14282 FlxA: FlxA-like prote 84.0 12 0.00026 30.5 9.3 61 28-89 18-78 (106)
11 PF04645 DUF603: Protein of un 71.5 12 0.00025 33.4 5.9 45 31-82 107-151 (181)
12 PF05412 Peptidase_C33: Equine 68.8 3.6 7.8E-05 33.8 2.0 19 175-193 3-21 (108)
13 PF08232 Striatin: Striatin fa 60.6 24 0.00052 30.0 5.7 44 36-84 25-68 (134)
14 PF06858 NOG1: Nucleolar GTP-b 51.7 42 0.00091 24.7 4.9 36 157-193 2-37 (58)
15 PRK09784 hypothetical protein; 51.4 7.9 0.00017 36.6 1.3 24 166-189 195-218 (417)
16 PF12999 PRKCSH-like: Glucosid 50.6 36 0.00078 30.5 5.3 53 27-83 119-174 (176)
17 COG5007 Predicted transcriptio 50.5 13 0.00028 29.0 2.1 56 160-218 4-61 (80)
18 PF07851 TMPIT: TMPIT-like pro 50.1 34 0.00074 33.6 5.5 42 30-82 40-81 (330)
19 PF05529 Bap31: B-cell recepto 49.7 48 0.001 29.4 6.1 54 36-90 125-181 (192)
20 PF06657 Cep57_MT_bd: Centroso 47.4 1.3E+02 0.0028 23.2 7.6 45 32-83 27-71 (79)
21 KOG2605 OTU (ovarian tumor)-li 46.5 4.5 9.7E-05 40.3 -1.2 131 168-321 52-185 (371)
22 PF06785 UPF0242: Uncharacteri 44.3 60 0.0013 32.0 6.1 51 26-88 131-183 (401)
23 KOG4100 Uncharacterized conser 40.7 16 0.00035 30.4 1.5 54 183-259 15-80 (125)
24 PF04420 CHD5: CHD5-like prote 40.4 1.1E+02 0.0024 26.6 6.8 55 33-87 37-91 (161)
25 PF05104 Rib_recp_KP_reg: Ribo 40.0 15 0.00032 32.0 1.1 19 24-42 3-21 (151)
26 cd00361 arom_aa_hydroxylase Bi 39.2 36 0.00077 31.6 3.6 109 147-273 37-152 (221)
27 PF05159 Capsule_synth: Capsul 38.1 62 0.0014 29.9 5.2 55 255-321 5-64 (269)
28 PRK11913 phhA phenylalanine 4- 37.8 48 0.001 31.8 4.3 109 147-273 59-174 (275)
29 PRK11546 zraP zinc resistance 36.9 1.7E+02 0.0036 25.4 7.2 58 22-83 47-110 (143)
30 PF08581 Tup_N: Tup N-terminal 36.9 1.3E+02 0.0027 23.4 5.8 41 33-81 36-76 (79)
31 PF10224 DUF2205: Predicted co 36.4 63 0.0014 25.2 4.1 32 34-77 21-52 (80)
32 TIGR00513 accA acetyl-CoA carb 35.9 69 0.0015 31.3 5.2 42 34-83 8-49 (316)
33 TIGR02338 gimC_beta prefoldin, 35.6 1.5E+02 0.0033 23.9 6.5 43 26-80 64-106 (110)
34 KOG4364 Chromatin assembly fac 35.4 2.4E+02 0.0052 30.5 9.2 18 72-89 295-312 (811)
35 PF02403 Seryl_tRNA_N: Seryl-t 35.1 1.4E+02 0.0031 23.6 6.2 21 60-80 72-92 (108)
36 PF10779 XhlA: Haemolysin XhlA 34.8 1E+02 0.0023 23.0 5.0 46 28-78 5-50 (71)
37 PF02388 FemAB: FemAB family; 34.0 1.3E+02 0.0029 30.0 7.1 51 28-80 241-291 (406)
38 PF06810 Phage_GP20: Phage min 33.7 1.2E+02 0.0026 26.4 5.8 47 35-90 33-82 (155)
39 PRK05724 acetyl-CoA carboxylas 33.3 75 0.0016 31.1 5.0 42 34-83 8-49 (319)
40 PF07106 TBPIP: Tat binding pr 32.9 1.8E+02 0.0039 25.2 6.9 47 31-80 88-134 (169)
41 PF14335 DUF4391: Domain of un 32.6 59 0.0013 29.7 4.0 49 26-78 173-221 (221)
42 PRK11020 hypothetical protein; 31.5 1.4E+02 0.003 25.0 5.4 22 29-50 31-52 (118)
43 PLN03230 acetyl-coenzyme A car 31.2 88 0.0019 31.8 5.2 42 34-83 78-119 (431)
44 cd03345 eu_TyrOH Eukaryotic ty 30.9 1.9E+02 0.0042 28.1 7.2 105 150-272 99-209 (298)
45 PF05381 Peptidase_C21: Tymovi 30.8 1.6E+02 0.0034 24.2 5.6 47 261-318 48-94 (104)
46 PF09304 Cortex-I_coil: Cortex 30.8 2.5E+02 0.0054 23.2 6.8 47 26-81 31-77 (107)
47 KOG4809 Rab6 GTPase-interactin 30.5 1.1E+02 0.0024 32.2 5.8 48 39-89 362-414 (654)
48 CHL00198 accA acetyl-CoA carbo 30.5 92 0.002 30.6 5.0 43 34-84 11-53 (322)
49 cd03346 eu_TrpOH Eukaryotic tr 30.4 69 0.0015 30.9 4.1 105 151-274 101-212 (287)
50 PF13801 Metal_resist: Heavy-m 29.9 2.6E+02 0.0057 21.6 7.8 65 21-89 44-114 (125)
51 KOG0642 Cell-cycle nuclear pro 29.4 60 0.0013 34.0 3.7 52 28-84 33-84 (577)
52 COG0825 AccA Acetyl-CoA carbox 29.3 91 0.002 30.3 4.7 46 34-87 7-52 (317)
53 cd00632 Prefoldin_beta Prefold 28.8 2.2E+02 0.0047 22.7 6.3 45 25-81 59-103 (105)
54 KOG0930 Guanine nucleotide exc 28.5 1.9E+02 0.0042 28.1 6.6 41 31-83 19-63 (395)
55 PF01920 Prefoldin_2: Prefoldi 28.5 2.3E+02 0.0049 22.0 6.3 43 26-80 59-101 (106)
56 PF02996 Prefoldin: Prefoldin 28.3 1.8E+02 0.0039 23.3 5.8 47 25-83 73-119 (120)
57 cd03348 pro_PheOH Prokaryotic 28.2 77 0.0017 29.6 3.9 108 147-273 43-158 (228)
58 KOG1265 Phospholipase C [Lipid 27.5 2.3E+02 0.0051 31.7 7.8 28 28-55 1081-1108(1189)
59 PF04912 Dynamitin: Dynamitin 26.5 1.6E+02 0.0034 29.3 6.1 63 22-86 87-149 (388)
60 COG5481 Uncharacterized conser 26.5 2.7E+02 0.0059 20.6 6.0 49 28-78 10-61 (67)
61 TIGR01270 Trp_5_monoox tryptop 26.5 71 0.0015 32.8 3.7 103 152-274 231-341 (464)
62 TIGR01267 Phe4hydrox_mono phen 26.2 1.2E+02 0.0027 28.6 4.9 47 147-193 43-92 (248)
63 COG2825 HlpA Outer membrane pr 25.7 3.9E+02 0.0085 23.5 7.8 31 24-54 46-76 (170)
64 PF07716 bZIP_2: Basic region 25.2 2.4E+02 0.0051 19.7 5.2 8 41-48 30-37 (54)
65 smart00718 DM4_12 DM4/DM12 fam 24.9 54 0.0012 26.1 2.0 31 155-192 6-37 (95)
66 PF15619 Lebercilin: Ciliary p 24.6 2.9E+02 0.0062 25.0 6.9 51 25-80 57-107 (194)
67 PF03255 ACCA: Acetyl co-enzym 23.4 12 0.00026 32.5 -2.1 38 35-80 6-43 (145)
68 PRK10963 hypothetical protein; 23.1 55 0.0012 30.0 2.0 16 208-223 6-21 (223)
69 COG5414 TATA-binding protein-a 22.6 2.5E+02 0.0055 27.4 6.3 46 35-83 340-385 (392)
70 PF12925 APP_E2: E2 domain of 22.6 1.5E+02 0.0034 26.9 4.7 72 15-90 18-98 (193)
71 PRK10780 periplasmic chaperone 22.3 5.1E+02 0.011 22.3 8.6 18 72-89 104-121 (165)
72 PF10211 Ax_dynein_light: Axon 22.2 5.5E+02 0.012 22.9 8.2 23 27-49 82-104 (189)
73 PF04874 Mak16: Mak16 protein 21.7 1.7E+02 0.0038 23.8 4.4 33 123-164 1-33 (101)
74 PF01381 HTH_3: Helix-turn-hel 21.4 1.2E+02 0.0025 20.6 3.0 29 245-273 24-52 (55)
75 PF15261 DUF4591: Domain of un 21.2 1.1E+02 0.0023 26.2 3.2 28 16-43 100-127 (134)
76 KOG2223 Uncharacterized conser 21.0 1.1E+02 0.0025 31.4 3.8 34 31-71 231-264 (586)
77 cd03347 eu_PheOH Eukaryotic ph 20.9 1.3E+02 0.0027 29.4 4.0 107 150-274 100-212 (306)
78 TIGR01268 Phe4hydrox_tetr phen 20.4 1E+02 0.0023 31.4 3.5 106 151-274 203-314 (436)
79 PRK09343 prefoldin subunit bet 20.4 4.5E+02 0.0098 21.7 6.8 43 26-80 68-110 (121)
80 COG2433 Uncharacterized conser 20.3 3.4E+02 0.0074 29.0 7.2 45 27-83 427-471 (652)
81 TIGR01269 Tyr_3_monoox tyrosin 20.1 1.3E+02 0.0028 30.9 4.0 102 152-273 225-334 (457)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-72 Score=522.49 Aligned_cols=285 Identities=44% Similarity=0.748 Sum_probs=247.6
Q ss_pred cccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CC
Q 020732 22 KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGN--EK 99 (322)
Q Consensus 22 ~~~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l~~~~~~~~--~~ 99 (322)
...+++++|++|||+|+|+||++||+|||+++||+| ++||+++.+|++||.+|.+||.+||..+........ .+
T Consensus 9 ~~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e 84 (302)
T KOG2606|consen 9 QDEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKE 84 (302)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccc
Confidence 344556999999999999999999999999999996 889999999999999999999999999985332111 12
Q ss_pred CcchhhhhhhcccccccccCCCCCccchhhHHHHHHHHHHHH-HHHHHHH--hcccCCchhHHHHHHHHhccCCCeeeee
Q 020732 100 SNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDI 176 (322)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~sKa~~Rr~~r~~~~~~r~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I 176 (322)
...++++..++.+.....++.|+.||++|||.+++..++.++ ++|.+++ .+.++.+.+|.+.|.+.|...||.+++|
T Consensus 85 ~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~I 164 (302)
T KOG2606|consen 85 NLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDI 164 (302)
T ss_pred cchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccC
Confidence 234566666667766666555667898888877766666665 8887644 4789999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCCcc
Q 020732 177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAW 256 (322)
Q Consensus 177 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~W 256 (322)
|+||||||+||+|||..+++ ...++..||..+|+||+.|.++|.||+.++.+++..+ .++|+.||+.|++|+.|
T Consensus 165 p~DG~ClY~aI~hQL~~~~~--~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~----~~~f~~Yc~eI~~t~~W 238 (302)
T KOG2606|consen 165 PADGHCLYAAISHQLKLRSG--KLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLG----PEDFDKYCREIRNTAAW 238 (302)
T ss_pred CCCchhhHHHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCC----HHHHHHHHHHhhhhccc
Confidence 99999999999999998775 5589999999999999999999999999998877432 67899999999999999
Q ss_pred CchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732 257 GGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322 (322)
Q Consensus 257 GG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~ 322 (322)
||+|||.|||++|++||+||+.++|+++||++|.. .+||.|+||+|+|+||+|||||.|.
T Consensus 239 GgelEL~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 239 GGELELKALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred cchHHHHHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence 99999999999999999999999999999999863 5899999999999999999999884
No 2
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-33 Score=256.57 Aligned_cols=279 Identities=19% Similarity=0.159 Sum_probs=219.1
Q ss_pred cccccc-HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 020732 21 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK 99 (322)
Q Consensus 21 ~~~~~~-~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l~~~~~~~~~~ 99 (322)
+..-+| |+.|+.+||.|.++||.+||.++|+++.|.+ +.| |+..|..|+..|..+|+-|+..+.....+.++-
T Consensus 7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea 80 (306)
T COG5539 7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA 80 (306)
T ss_pred ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence 344555 8999999999999999999999999998875 322 999999999999999999999886432211111
Q ss_pred Ccchhhh--hhhcccc------------ccccc-CCCCCccchhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHH
Q 020732 100 SNLDNLV--KAVAGVT------------VISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE 160 (322)
Q Consensus 100 ~~~~~~~--~~~~~~~------------~~~~~-~~~~~sKa~~Rr~~r~~~~~~r~~~i~~e~~~~----~~~r~~E~~ 160 (322)
+++++++ ..++... ..... .+....++++||+.+..++.+....+++.++.+ ++-...+..
T Consensus 81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~ 160 (306)
T COG5539 81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL 160 (306)
T ss_pred CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence 1111111 1111111 11111 123456899999999999998888887755443 455788888
Q ss_pred HHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhh
Q 020732 161 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 240 (322)
Q Consensus 161 ~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~ 240 (322)
.+...+...+|.-.++.|||+|+|.+|++||..+.....-.....+|-.-+.|...|...|.+|+.++.++. .
T Consensus 161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~-------m 233 (306)
T COG5539 161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLA-------M 233 (306)
T ss_pred CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhh-------c
Confidence 999999999999999999999999999999987543112233588999999999999999999999988765 4
Q ss_pred hhHHHHHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732 241 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320 (322)
Q Consensus 241 ~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~ 320 (322)
..|++||+.|..++.||+.+|++|||+.|++|++++...+|.+++.+- +.+..+-+.|++|+|++| |||++.
T Consensus 234 ~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 234 VLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred chHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence 689999999999999999999999999999999999999999987541 124457789999999999 999974
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.93 E-value=8.1e-27 Score=192.69 Aligned_cols=119 Identities=37% Similarity=0.608 Sum_probs=95.3
Q ss_pred CCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHh-cCccccccccccccccchhhhhhhhhhHHHHHHHhccCCc
Q 020732 177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR-DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA 255 (322)
Q Consensus 177 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~-~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~ 255 (322)
|||||||||||++||+..+. ..+.+|..||+.+++||+ .|++.|.+|+.+ . .|.++++
T Consensus 1 pgDGnClF~Avs~~l~~~~~-~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~--------------~------~~~~~~~ 59 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGG-GSEDNHQELRKAVVDYLRDKNRDKFEEFLEG--------------D------KMSKPGT 59 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-S-SSTTTHHHHHHHHHHHHHTHTTTHHHHHHHH--------------H------HHTSTTS
T ss_pred CCCccHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhhhhh--------------h------hhccccc
Confidence 79999999999999994321 057899999999999999 999999999863 1 8999999
Q ss_pred cCchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCC-CCCCCCCCeEEEEeccCCCCCCCcc
Q 020732 256 WGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSIILSYHRHAFGLGEHY 316 (322)
Q Consensus 256 WGG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~-~~~~~~~~~I~L~Y~~~~y~LGeHY 316 (322)
|||++||.|||++|+++|+||+...+.......+.. ..+....++|+|+|+.+.|..|+||
T Consensus 60 Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 60 WGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred cCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 999999999999999999999876554321111110 1123457899999999999999999
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-17 Score=153.20 Aligned_cols=121 Identities=20% Similarity=0.412 Sum_probs=99.6
Q ss_pred CeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHh
Q 020732 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEV 250 (322)
Q Consensus 171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m 250 (322)
|.++-||.|.+|||+||++-+.+... ....+||+.+|..+..|++.|..-+.+ .+-.+||.||
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~----~~~~elR~iiA~~Vasnp~~yn~AiLg-------------K~n~eYc~WI 172 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVS----NRPYELREIIAQEVASNPDKYNDAILG-------------KPNKEYCAWI 172 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccC----CCcHHHHHHHHHHHhcChhhhhHHHhC-------------CCcHHHHHHH
Confidence 66788999999999999999987432 234789999999999999998655443 4568999999
Q ss_pred ccCCccCchHHHHHHHHhhcCcEEEEECCCCce-EeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732 251 ESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320 (322)
Q Consensus 251 ~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~-~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~ 320 (322)
.+..+|||-|||..||+.|+|.|.|++.....+ .||+. .+-...+.|.|. |.|||++.
T Consensus 173 ~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged------~~~~~rv~llyd------GIHYD~l~ 231 (307)
T KOG3288|consen 173 LKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGED------KNFDNRVLLLYD------GIHYDPLA 231 (307)
T ss_pred ccccccCceEEeeeehhhhceeEEEEecceeeehhcCCC------CCCCceEEEEec------ccccChhh
Confidence 999999999999999999999999999776544 36643 123567899998 79999874
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.63 E-value=4.4e-16 Score=144.46 Aligned_cols=102 Identities=24% Similarity=0.390 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hccCCccCchHHHHHHHHhhcCcEEEEECCCC
Q 020732 203 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP 281 (322)
Q Consensus 203 ~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~ 281 (322)
...||..++.||+.|++.|.||+.+.+ ..+|++||.. |...+.=++++.|.|||++|+++|.|+..++.
T Consensus 139 V~flRLlts~~l~~~~d~y~~fi~~~~----------~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~ 208 (244)
T PF10275_consen 139 VIFLRLLTSAYLKSNSDEYEPFIDGLE----------YLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRS 208 (244)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSTT------------S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSS
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhcccc----------cCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCC
Confidence 568999999999999999999998642 2479999975 88888899999999999999999999998854
Q ss_pred c--eEeC-CCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732 282 D--VEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 282 ~--~~~g-~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p 321 (322)
. ..+. ..|.. ......+.|+|.|.. .|||-++|
T Consensus 209 ~~~~~~~~~~~~~-~~~~~~~~i~LLyrp------gHYdIly~ 244 (244)
T PF10275_consen 209 VEGDEVNRHEFPP-DNESQEPQITLLYRP------GHYDILYP 244 (244)
T ss_dssp GCSTTSEEEEES--SSTTSS-SEEEEEET------BEEEEEEE
T ss_pred CCCCccccccCCC-ccCCCCCEEEEEEcC------CccccccC
Confidence 1 0010 01211 012347889999986 69999987
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=2.9e-15 Score=135.43 Aligned_cols=98 Identities=17% Similarity=0.332 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hccCCccCchHHHHHHHHhhcCcEEEEECCCC
Q 020732 203 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP 281 (322)
Q Consensus 203 ~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~ 281 (322)
+..||..++.+|+.|+|.|.|||..+ .++.+||.. ++--..-.|+|+|.|||+++++.|.|...+..
T Consensus 156 V~ylRLvtS~~ik~~adfy~pFI~e~------------~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~ 223 (256)
T KOG3991|consen 156 VMYLRLVTSGFIKSNADFYQPFIDEG------------MTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRG 223 (256)
T ss_pred HHHHHHHHHHHHhhChhhhhccCCCC------------CcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCC
Confidence 57899999999999999999999762 479999997 55445558999999999999999999987643
Q ss_pred ce-EeCC-CCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732 282 DV-EMGK-EYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322 (322)
Q Consensus 282 ~~-~~g~-e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~ 322 (322)
.- ..+. .| +....|.|+|.|.. .|||-++|.
T Consensus 224 ~~~~~~hH~f----pe~s~P~I~LLYrp------GHYdilY~~ 256 (256)
T KOG3991|consen 224 SGDTVNHHDF----PEASAPEIYLLYRP------GHYDILYKK 256 (256)
T ss_pred CCCCCCCCcC----ccccCceEEEEecC------CccccccCC
Confidence 22 2222 23 23457899999975 799999873
No 7
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.5e-13 Score=131.57 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=102.9
Q ss_pred HHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhh
Q 020732 159 DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQS 238 (322)
Q Consensus 159 ~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~ 238 (322)
...+...+...||.+..|..||+|+|||+++||++ +...|..+|+.+++++..+++.|..|++
T Consensus 206 ~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~-----d~e~~~~~~~~~~dq~~~e~~~~~~~vt------------ 268 (371)
T KOG2605|consen 206 HERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG-----DDEQHDHNRRECVDQLKKERDFYEDYVT------------ 268 (371)
T ss_pred HHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhc-----CHHHHHHHHHHHHHHHhhcccccccccc------------
Confidence 34444555788999999999999999999999999 4678999999999999999999998875
Q ss_pred hhhhHHHHHHHhccCCccCchHHHHHHHH---hhcCcEEEEECCCCceE-eCCCCCCCCCCCCCCeEEEEeccCCCCCCC
Q 020732 239 QVERFENYCKEVESTAAWGGELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGE 314 (322)
Q Consensus 239 ~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~---~l~~~I~V~~~~~~~~~-~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGe 314 (322)
++|..|++.++..+.||.++|++|+|. ....|+.|.+...+.|+ +.+.+. .....+++.| ..-.
T Consensus 269 --~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n~-----~~~~ 336 (371)
T KOG2605|consen 269 --EDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYNF-----WVEV 336 (371)
T ss_pred --cchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhcc-----cchh
Confidence 369999999999999999999999995 55566666666666554 222111 1122233333 3468
Q ss_pred ccccccc
Q 020732 315 HYNSVIP 321 (322)
Q Consensus 315 HYnSv~p 321 (322)
||+.+++
T Consensus 337 h~~~~~~ 343 (371)
T KOG2605|consen 337 HYNTARH 343 (371)
T ss_pred hhhhccc
Confidence 9998875
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.6e-10 Score=103.65 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=90.7
Q ss_pred CCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCCcc
Q 020732 177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAW 256 (322)
Q Consensus 177 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~W 256 (322)
.+|..|+|++++..++. ..+..||..++..+..|||.|.+.+.+ .+.-.||.++.+...|
T Consensus 118 ~~d~srl~q~~~~~l~~-------asv~~lrE~vs~Ev~snPDl~n~~i~~-------------~~~i~y~~~i~k~d~~ 177 (306)
T COG5539 118 QDDNSRLFQAERYSLRD-------ASVAKLREVVSLEVLSNPDLYNPAILE-------------IDVIAYATWIVKPDSQ 177 (306)
T ss_pred CCchHHHHHHHHhhhhh-------hhHHHHHHHHHHHHhhCccccchhhcC-------------cchHHHHHhhhccccC
Confidence 35889999999999975 268999999999999999999998875 3567999999999999
Q ss_pred C-chHHHHHHHHhhcCcEEEEECCCC-ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732 257 G-GELELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320 (322)
Q Consensus 257 G-G~lEL~ALA~~l~~~I~V~~~~~~-~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~ 320 (322)
| |.+||.+||+.|++.|+|+..+.. ...+++. .....+.+.|. |.||++..
T Consensus 178 ~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t 230 (306)
T COG5539 178 GDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET 230 (306)
T ss_pred CCceEEEeEeccccceeeeeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence 9 999999999999999999998843 2234321 11235677777 68999753
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=90.93 E-value=0.44 Score=37.91 Aligned_cols=65 Identities=17% Similarity=0.406 Sum_probs=46.9
Q ss_pred eCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhc--cC
Q 020732 176 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVE--ST 253 (322)
Q Consensus 176 I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~--~~ 253 (322)
|..|.|||.-||+..|+. +...|... |..| ...+..||.+++ .+
T Consensus 3 ~sR~NNCLVVAis~~L~~--------T~e~l~~~----M~An----------------------~~~i~~y~~W~r~~~~ 48 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGV--------TLEKLDNL----MQAN----------------------VSTIKKYHTWLRKKRP 48 (104)
T ss_pred ccCCCCeEeehHHHHhcc--------hHHHHHHH----HHhh----------------------HHHHHHHHHHHhcCCC
Confidence 467999999999999975 23344333 2222 236889999976 56
Q ss_pred CccCchHHHHHHHHhhcCcEEEEE
Q 020732 254 AAWGGELELRALTHCLRKHIMIYS 277 (322)
Q Consensus 254 ~~WGG~lEL~ALA~~l~~~I~V~~ 277 (322)
.+|-+ ...+|..|++.|.|--
T Consensus 49 STW~D---C~mFA~~LkVsm~vkV 69 (104)
T PF05415_consen 49 STWDD---CRMFADALKVSMQVKV 69 (104)
T ss_pred CcHHH---HHHHHHhheeEEEEEE
Confidence 78976 4589999999988744
No 10
>PF14282 FlxA: FlxA-like protein
Probab=84.02 E-value=12 Score=30.49 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020732 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89 (322)
Q Consensus 28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l 89 (322)
+....+=.+.++.|+.+|..+.....- +-..++.+.+.+..+|..|++.|...+...-..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999998864221 2223356779999999999999998877665543
No 11
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=71.54 E-value=12 Score=33.40 Aligned_cols=45 Identities=38% Similarity=0.462 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHH
Q 020732 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (322)
Q Consensus 31 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh 82 (322)
++-+++|...|..+|..|.+... +++++.++.++..|+.||.+.-
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in-------~~~k~~~n~~i~slk~EL~d~i 151 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEIN-------KNKKKDLNEEIESLKSELNDLI 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHH
Confidence 67789999999999999998776 3667889999999999998754
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=68.77 E-value=3.6 Score=33.75 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=16.3
Q ss_pred eeCCCCchhhHHHHHHHhh
Q 020732 175 DIKPDGHCLYRAVEDQLAH 193 (322)
Q Consensus 175 ~I~~DGnCLFrAIa~QL~~ 193 (322)
.-|+||+|-+|+|+.-++.
T Consensus 3 sPP~DG~CG~H~i~aI~n~ 21 (108)
T PF05412_consen 3 SPPGDGSCGWHCIAAIMNH 21 (108)
T ss_pred CCCCCCchHHHHHHHHHHH
Confidence 3578999999999998875
No 13
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=60.61 E-value=24 Score=30.02 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 020732 36 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (322)
Q Consensus 36 kE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~ 84 (322)
-|+.+|+++|..|--... .++..++.+...|..||..|++--..
T Consensus 25 iERaEmkarIa~LEGE~r-----~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERR-----GQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999864433 45688899999999999999865433
No 14
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=51.66 E-value=42 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=24.9
Q ss_pred hHHHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhh
Q 020732 157 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH 193 (322)
Q Consensus 157 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~ 193 (322)
+|.+++...---.+..++=+-+-|.|.| +|..|+.-
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGy-sie~Q~~L 37 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGY-SIEEQLSL 37 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS--HHHHHHH
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCC-CHHHHHHH
Confidence 6777777655555667788889999999 89999864
No 15
>PRK09784 hypothetical protein; Provisional
Probab=51.42 E-value=7.9 Score=36.57 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.0
Q ss_pred hccCCCeeeeeCCCCchhhHHHHH
Q 020732 166 LGPLGLTVNDIKPDGHCLYRAVED 189 (322)
Q Consensus 166 L~~~gL~i~~I~~DGnCLFrAIa~ 189 (322)
-...||+--+|.|||-||.|||.-
T Consensus 195 n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhCceecccCCCchhHHHHHHH
Confidence 356799999999999999999964
No 16
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=50.60 E-value=36 Score=30.50 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHHHHHHHHH---HHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 27 RDEMLSRHRKEISQLQNKET---ELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 27 ~e~l~~rHrkE~k~Lq~~i~---~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
=.+|-+.+|+++......+. .+|.... ++.+++++++..++.+|+.+|....+
T Consensus 119 C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i----~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 119 CAELGKEYREELEEEEEIYKEGLKIRQELI----EEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777666554321 1111111 22346788899999999999887654
No 17
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=50.45 E-value=13 Score=29.01 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHHHHHhc-cCCCeeeeeCCCCchhhH-HHHHHHhhccCCCCcchHHHHHHHHHHHHhcCc
Q 020732 160 EKLEKKLG-PLGLTVNDIKPDGHCLYR-AVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHS 218 (322)
Q Consensus 160 ~~l~~~L~-~~gL~i~~I~~DGnCLFr-AIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~ 218 (322)
+.+..+|. .+.+...+|.|||+-+|- +|++.+.+.+. -..++-+-.-..+||.+|.
T Consensus 4 e~Ik~ll~~~L~~e~v~V~Gdg~Hf~vi~Vs~~F~g~sr---vkrqq~vYApL~~~i~~~~ 61 (80)
T COG5007 4 EEIKSLLENALPLEEVEVEGDGSHFQVIAVSEEFAGKSR---VKRQQLVYAPLMAYIADNE 61 (80)
T ss_pred HHHHHHHHhcCCccEEEEecCCceEEEEEehHhhcCccH---HHHHHHHHHHHHHHhhcCc
Confidence 44555554 567888999999998887 78888876432 3456666677778888764
No 18
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.05 E-value=34 Score=33.59 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHH
Q 020732 30 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (322)
Q Consensus 30 l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh 82 (322)
-+.+||+.+++|...++..+++++ .+-.+.+++|+.++++|.
T Consensus 40 sI~~QkkrLk~L~~sLk~~~~~~~-----------~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLKRCKKSLS-----------AEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHHHHHH
Confidence 367888888888888877776544 255667778888877766
No 19
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.74 E-value=48 Score=29.43 Aligned_cols=54 Identities=37% Similarity=0.521 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhhccCChhH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020732 36 KEISQLQNKETELKKAAAKGSKAE---QKAKKKQVEEEISRLSAKLREKHAKELASLG 90 (322)
Q Consensus 36 kE~k~Lq~~i~~~kk~~~k~~k~~---~Kk~kK~v~~e~~~le~el~~rh~~El~~l~ 90 (322)
+++..+++++..++|++....++. .+...+...+|+++|..+|+. .+.|+..|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~-~~~~~~~Lk 181 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK-KEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 455667888888888775333211 123446678899999999988 666676665
No 20
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=47.42 E-value=1.3e+02 Score=23.21 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 32 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 32 ~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
...+.|..+|++....|..+.. +.+|+.+..++..|-..|+.+..
T Consensus 27 ~hm~~e~~~L~~~~~~~d~s~~-------~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 27 GHMKMEHQELQDEYKQMDPSLG-------RRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665544 57899999999999999998864
No 21
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=46.50 E-value=4.5 Score=40.30 Aligned_cols=131 Identities=11% Similarity=0.007 Sum_probs=86.9
Q ss_pred cCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHH
Q 020732 168 PLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYC 247 (322)
Q Consensus 168 ~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~ 247 (322)
-.+..++...-|+.|.++.+.+++... +.-...=+..++-|...+.+.|.+ ..+ ..+.-||
T Consensus 52 ~~~~~r~~~v~~~~~~~~~~~d~~~~~-----e~~e~~~~~~~v~~~~~~~~~~~~---~~~-----------~~~~~~~ 112 (371)
T KOG2605|consen 52 GYNNKRYGEVDRDFMIARGHQDEVLTV-----EDAEMAAICQSVLFKVLYQERFKL---PSD-----------TPCNGEN 112 (371)
T ss_pred cccCccccchhhhhhhhcccccccccc-----cHHHHhhHHhhhhhhhhhhhcccC---CCC-----------CcccccC
Confidence 345556666779999999999999874 345666777888888888888875 221 2567788
Q ss_pred HHhccCCccCchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEec---cCCCCCCCccccccc
Q 020732 248 KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYH---RHAFGLGEHYNSVIP 321 (322)
Q Consensus 248 ~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~I~L~Y~---~~~y~LGeHYnSv~p 321 (322)
-.|-..++|-|...+.|.+.-....+..+-.-++.| .|..+.. .....+++.+|+ .-++..|+++|...|
T Consensus 113 ~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~-~~~~~sd---~~~~~~~~~~~~~~~~~~~~~g~~in~y~~ 185 (371)
T KOG2605|consen 113 SPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEW-LGQSPSD---PLRSVPSMEAIHARHPEAKEVGVRINDYNP 185 (371)
T ss_pred CCCCcccccccccccccccccccccchhhhccCchh-ccccccc---cccccccccchhhccccchhhcccccCCCc
Confidence 888889999999888888776655554444444444 2223321 112345666666 345556777776554
No 22
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.33 E-value=60 Score=32.03 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=40.0
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHH
Q 020732 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE--KHAKELAS 88 (322)
Q Consensus 26 ~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~--rh~~El~~ 88 (322)
-+|.++++|+.|..-||.+.+.++.... +..+|-..|-+||.+ +.+++|.+
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~------------Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECG------------EKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999987654 666777788666654 56667765
No 23
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.66 E-value=16 Score=30.41 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=32.9
Q ss_pred hhHHHHHHHhhccCCCCcchHHHHHHHHHHHHh--------cCccccccccccccccchhhhhhhhhhHHHHHHHhcc--
Q 020732 183 LYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR--------DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVES-- 252 (322)
Q Consensus 183 LFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~--------~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~-- 252 (322)
||+.|..+-.+. ..++|.+-=.|++ -|+....+||. +|+.||..+.+
T Consensus 15 LYkriLrlHr~l--------p~~~R~lGD~YVkdEFrrHk~vnp~~~~~Flt---------------eW~~Ya~~l~qql 71 (125)
T KOG4100|consen 15 LYKRILRLHRGL--------PAELRALGDQYVKDEFRRHKTVNPLEAQGFLT---------------EWERYAVALSQQL 71 (125)
T ss_pred HHHHHHHHHccC--------ChHHHHHHHHHHHHHHHHhccCChHHHHHHHH---------------HHHHHHHHHHHHh
Confidence 777776655442 2355555444443 34555566654 69999998765
Q ss_pred --CCccCch
Q 020732 253 --TAAWGGE 259 (322)
Q Consensus 253 --~~~WGG~ 259 (322)
.|.|-|.
T Consensus 72 ~~~g~~K~~ 80 (125)
T KOG4100|consen 72 SSAGKWKGE 80 (125)
T ss_pred hhcCccccc
Confidence 4677553
No 24
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.38 E-value=1.1e+02 Score=26.63 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020732 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 87 (322)
Q Consensus 33 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~ 87 (322)
+-.++.++|+..|.++|+....-+-++.=.|=-.++.++.+|+.||+...+.-..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888877643332222222334677888888888876554443
No 25
>PF05104 Rib_recp_KP_reg: Ribosome receptor lysine/proline rich region; InterPro: IPR007794 The ribosome receptor is an integral endoplasmic reticulum protein that has been suggested to be involved in secretion. This highly conserved region is found towards the C terminus of the transmembrane domain []. The function is unclear.; GO: 0015031 protein transport, 0030176 integral to endoplasmic reticulum membrane
Probab=39.95 E-value=15 Score=31.98 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.3
Q ss_pred cccHHHHHHhHHHHHHHHH
Q 020732 24 QETRDEMLSRHRKEISQLQ 42 (322)
Q Consensus 24 ~~~~e~l~~rHrkE~k~Lq 42 (322)
+.|+|+.|+.+|+|+--+|
T Consensus 3 EtSYEEaLAkQrke~~K~~ 21 (151)
T PF05104_consen 3 ETSYEEALAKQRKELEKTQ 21 (151)
T ss_pred cccHHHHHHHHHHHhhccc
Confidence 4578999999999994444
No 26
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=39.16 E-value=36 Score=31.60 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=63.7
Q ss_pred HHhcccCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccc
Q 020732 147 EQSNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLP 223 (322)
Q Consensus 147 e~~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~p 223 (322)
+.-+.+.++---.+.|.+.|.+ -|+.++.|+| ...=+|..+|+..+. ++.|||.+.+..
T Consensus 37 ~~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp----------------~t~~iR~~~~~~-- 98 (221)
T cd00361 37 ELLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAFRVFP----------------VTQYIRHPEEPD-- 98 (221)
T ss_pred HHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCc----------------eeeeecCcCCCC--
Confidence 3344566676677789999988 8999999999 778888888775543 234566654321
Q ss_pred cccccccc-chh--hhhhhhhhHHHHHHHhccCCccCch-HHHHHHHHhhcCcE
Q 020732 224 FYLSENMI-GEE--SAQSQVERFENYCKEVESTAAWGGE-LELRALTHCLRKHI 273 (322)
Q Consensus 224 fl~~~~~~-~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~-lEL~ALA~~l~~~I 273 (322)
|+..++.- +.. ..-.....|.+|...+-.-+.=... -++..||++|=-.|
T Consensus 99 YtpEPDifHe~~GH~P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTV 152 (221)
T cd00361 99 YTPEPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLARLYWFTV 152 (221)
T ss_pred CCCCChhHHHHhccchhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHhhhhhc
Confidence 11111100 000 0011234688888876443322333 56778888874443
No 27
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=38.09 E-value=62 Score=29.92 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=38.1
Q ss_pred ccCchH----HHHHHHHhhcCcEEEEECCCC-ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732 255 AWGGEL----ELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 255 ~WGG~l----EL~ALA~~l~~~I~V~~~~~~-~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p 321 (322)
.||+.- .+..+|+.+++|+.++..|-- .+.+|.. ..+|.++.+... |.+|+|..|
T Consensus 5 ~wg~~~~~~~~~~~~a~~~~i~~~~~E~G~lR~~~~~~~--------~~~P~s~~~D~~----Gv~~~s~~~ 64 (269)
T PF05159_consen 5 VWGDKRPYHRAAIEVAKELGIPVIFFEDGFLRSIGLGSD--------GYPPDSLTIDPQ----GVNADSSLP 64 (269)
T ss_pred EECCCccHHHHHHHHHHHhCCCEEEEecCcccccccccc--------CCCCeEEEECCC----CccCCCCCc
Confidence 588763 345678999999999987732 2222221 256888888876 889998765
No 28
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=37.79 E-value=48 Score=31.80 Aligned_cols=109 Identities=10% Similarity=0.101 Sum_probs=63.2
Q ss_pred HHhcccCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccc
Q 020732 147 EQSNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLP 223 (322)
Q Consensus 147 e~~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~p 223 (322)
+.-+.+.++.--.+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+.+
T Consensus 59 ~~L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp----------------~t~~IR~~~~~~-- 120 (275)
T PRK11913 59 EALGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLANRRFP----------------VATFIRRPEELD-- 120 (275)
T ss_pred HHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHHhcCccc----------------eeeeecCccccC--
Confidence 3445566666677789999997 8999999999 888888888876654 344666654421
Q ss_pred cccccccc-chh--hhhhhhhhHHHHHHHhccCCccCchHHHH-HHHHhhcCcE
Q 020732 224 FYLSENMI-GEE--SAQSQVERFENYCKEVESTAAWGGELELR-ALTHCLRKHI 273 (322)
Q Consensus 224 fl~~~~~~-~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~-ALA~~l~~~I 273 (322)
|+..++.- +.. ..-.....|.+|...+-.-+.=....... .||++|=-.|
T Consensus 121 YtpEPDifHevfGHvPmL~~p~FAdf~q~~G~~~l~a~~~~~~~~LarlyWfTV 174 (275)
T PRK11913 121 YLQEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRASKEGRLEFLARLYWFTV 174 (275)
T ss_pred CCCCCchHHHHhccchhhcCHHHHHHHHHHHHHHhCcChhhHHHHHhhheeeee
Confidence 11111100 000 00112346888888764433222333333 6787774443
No 29
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.93 E-value=1.7e+02 Score=25.39 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=39.1
Q ss_pred cccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 22 KKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 22 ~~~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~------~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
++....+.|.+.+..+--+|..++...+=.. ++.|. ++=+.+..||..|...|.++|.
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~----~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS----SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677788777777766655433221 34453 5568899999999999988775
No 30
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.87 E-value=1.3e+02 Score=23.43 Aligned_cols=41 Identities=37% Similarity=0.514 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHH
Q 020732 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (322)
Q Consensus 33 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~r 81 (322)
.+-.|+-.++.++-.|-.+-. |-|..-.+||++|..+|+.|
T Consensus 36 ~Qi~Em~~ir~~v~eLE~~h~--------kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 36 SQIQEMQQIRQKVYELEQAHR--------KMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444333 45556666666666666554
No 31
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.39 E-value=63 Score=25.22 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHH
Q 020732 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 77 (322)
Q Consensus 34 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~e 77 (322)
=.++.++||..+..|---+. .|..+|.+|+.|
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve------------~Vk~E~~kL~~E 52 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVE------------EVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 34467777777766654333 788889888764
No 32
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=35.93 E-value=69 Score=31.30 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 34 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
.-|.+.+|+.+|..|++.... ..-.+.++|.+||..+.+...
T Consensus 8 fe~~i~~l~~~~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (316)
T TIGR00513 8 FEKPIAELEAKIESLRARSRD--------EDVDLSEEIERLEKRSVELTK 49 (316)
T ss_pred hhHHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457899999999999986552 234788999999998776543
No 33
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.56 E-value=1.5e+02 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=31.7
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 26 ~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
+.+++.....+.++.+...|..+.+ +.+.+..++..++..|.+
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek------------~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQR------------QEERLREQLKELQEKIQE 106 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888877764 344677777777777765
No 34
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=35.41 E-value=2.4e+02 Score=30.53 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020732 72 SRLSAKLREKHAKELASL 89 (322)
Q Consensus 72 ~~le~el~~rh~~El~~l 89 (322)
++++..|+.+.+.|+..-
T Consensus 295 ekee~Klekd~KKqqkek 312 (811)
T KOG4364|consen 295 EKEETKLEKDIKKQQKEK 312 (811)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 35
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.10 E-value=1.4e+02 Score=23.65 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=13.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHH
Q 020732 60 QKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 60 ~Kk~kK~v~~e~~~le~el~~ 80 (322)
-+..-+.+.+++..||.++.+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777776654
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.84 E-value=1e+02 Score=22.96 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=33.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 020732 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (322)
Q Consensus 28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el 78 (322)
.+=+.||...++++..++..+.+.-+..+ +.-+.++.++.+++..+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e-----~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANE-----KDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34478999999999999999887766332 23477888888777654
No 37
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.05 E-value=1.3e+02 Score=30.03 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
.+.+..=.+++..|+.+|..+.....+..| .++++++++++++.++.++.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k--~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPK--KKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 456666677788888888888876543333 256778899999988887765
No 38
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.66 E-value=1.2e+02 Score=26.42 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHhc
Q 020732 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR---EKHAKELASLG 90 (322)
Q Consensus 35 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~---~rh~~El~~l~ 90 (322)
+.++++.+.+|..||+++. | =-++..+|+.|+.+.+ +.|+.+|..+.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~--d-------~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAK--D-------NEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHhccC--C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777776433 1 2478888999987766 57777777654
No 39
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=33.34 E-value=75 Score=31.12 Aligned_cols=42 Identities=36% Similarity=0.466 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 34 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
.-|.+.+|+.+|..|++.... ..-.+.+||.+||..+++-..
T Consensus 8 fe~~i~~l~~~i~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (319)
T PRK05724 8 FEKPIAELEAKIEELRAVAED--------SDVDLSEEIERLEKKLEELTK 49 (319)
T ss_pred hhhHHHHHHHHHHHHHhhhcc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457789999999999986542 124789999999998776543
No 40
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.93 E-value=1.8e+02 Score=25.20 Aligned_cols=47 Identities=26% Similarity=0.425 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 31 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
++.-+++.+.|.+.+..|.+..|-.+ =...-.++..+|..|+..|..
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~e---l~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEE---LREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888877665211 123445666677777776664
No 41
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=32.65 E-value=59 Score=29.72 Aligned_cols=49 Identities=27% Similarity=0.376 Sum_probs=34.1
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 020732 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (322)
Q Consensus 26 ~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el 78 (322)
+..+...+ ..++..|+..|..+++.+.|- .|=.+|=+++.++.++++||
T Consensus 173 ~~~~~~~~-~~~i~~L~kei~~L~~~~~kE---kq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 173 SLWERIER-LEQIEKLEKEIAKLKKKIKKE---KQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred CHHHHHHH-HHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcC
Confidence 44444444 356788888999998877632 23466778999999888775
No 42
>PRK11020 hypothetical protein; Provisional
Probab=31.51 E-value=1.4e+02 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q 020732 29 EMLSRHRKEISQLQNKETELKK 50 (322)
Q Consensus 29 ~l~~rHrkE~k~Lq~~i~~~kk 50 (322)
++.++|.+|+..|..+|..+|.
T Consensus 31 ~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 31 EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666654
No 43
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=31.23 E-value=88 Score=31.85 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 34 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
.-|.+.+|+.+|..|++.... ..-.+.+||.+||..+.+-..
T Consensus 78 fe~pi~ele~ki~el~~~~~~--------~~~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 78 FEKPIVDLENRIDEVRELANK--------TGVDFSAQIAELEERYDQVRR 119 (431)
T ss_pred hhhHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457899999999999986652 235789999999998766544
No 44
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=30.92 E-value=1.9e+02 Score=28.06 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=61.3
Q ss_pred cccCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 020732 150 NIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 226 (322)
Q Consensus 150 ~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~ 226 (322)
+...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+.
T Consensus 99 gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp----------------~t~yIR~~~~~~--Ytp 160 (298)
T cd03345 99 GYSEDRIPQLEDVSEFLKERTGFQLRPVAGLLSARDFLASLAFRVFQ----------------CTQYIRHASSPM--HSP 160 (298)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHHhcCccc----------------ccceecCCcccC--CCC
Confidence 4455566667789999997 8999999999 777888888876654 235666654421 111
Q ss_pred ccccc-chh--hhhhhhhhHHHHHHHhccCCccCchHHHHHHHHhhcCc
Q 020732 227 SENMI-GEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKH 272 (322)
Q Consensus 227 ~~~~~-~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~ 272 (322)
.++.- +.. ..-.....|.+|...+-.-+-=...-+|.-||++|=-.
T Consensus 161 EPDi~HEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfT 209 (298)
T cd03345 161 EPDCCHELLGHVPMLADPTFAQFSQDIGLASLGASDEEIEKLSTLYWFT 209 (298)
T ss_pred CCchHHHHhccchhhCCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhh
Confidence 11100 000 00012346888888754322112445666788877433
No 45
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=30.81 E-value=1.6e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccc
Q 020732 261 ELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 318 (322)
Q Consensus 261 EL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnS 318 (322)
.+.|||..|+....|....+ .+.+|..- ....+.|.|.. |--.||..
T Consensus 48 hltaLa~~~~~~~~~hs~~~-~~~~Gi~~-------as~~~~I~ht~---G~p~HFs~ 94 (104)
T PF05381_consen 48 HLTALAYRYHFQCTFHSDHG-VLHYGIKD-------ASTVFTITHTP---GPPGHFSL 94 (104)
T ss_pred HHHHHHHHHheEEEEEcCCc-eEEeecCC-------CceEEEEEeCC---CCCCcccc
Confidence 57799999999999987765 44577532 23455555543 33468865
No 46
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.76 E-value=2.5e+02 Score=23.19 Aligned_cols=47 Identities=6% Similarity=0.252 Sum_probs=31.9
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHH
Q 020732 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (322)
Q Consensus 26 ~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~r 81 (322)
|.++| +..|.+++..+..+++=..+.. ++.-+++.+|+.+...|+..
T Consensus 31 S~~eL-~kqkd~L~~~l~~L~~q~~s~~--------qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 31 SQGEL-AKQKDQLRNALQSLQAQNASRN--------QRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34444 6666666666666666666666 66778888888888887763
No 47
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.50 E-value=1.1e+02 Score=32.16 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhccCChhHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 020732 39 SQLQNKETELKKAAAKGSKAEQKAKKK-----QVEEEISRLSAKLREKHAKELASL 89 (322)
Q Consensus 39 k~Lq~~i~~~kk~~~k~~k~~~Kk~kK-----~v~~e~~~le~el~~rh~~El~~l 89 (322)
++|+...++|+-+.-|-|+ |-+-. +-+++|.+|++.|.+-|..+..+-
T Consensus 362 ~dlkehassLas~glk~ds---~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar 414 (654)
T KOG4809|consen 362 IDLKEHASSLASAGLKRDS---KLKSLEIALEQKKEECSKMEAQLKKAHNIEDDAR 414 (654)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3444445555554444443 22222 336899999999999999998764
No 48
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=30.47 E-value=92 Score=30.56 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 020732 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (322)
Q Consensus 34 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~ 84 (322)
.-|.+.+|+.+|..|++....+ .-.+.+||.+|+..+.+...+
T Consensus 11 fe~~i~el~~~i~~l~~~~~~~--------~~~~~~~i~~l~~~~~~~~~~ 53 (322)
T CHL00198 11 FMKPLAELESQVEELSKLAPKN--------DKVINNKLKSFQRKLRILKKE 53 (322)
T ss_pred hhhhHHHHHHHHHHHHhhhccc--------ccCHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999855421 247899999999988776544
No 49
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=30.36 E-value=69 Score=30.88 Aligned_cols=105 Identities=14% Similarity=0.236 Sum_probs=63.3
Q ss_pred ccCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccc
Q 020732 151 IVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 227 (322)
Q Consensus 151 ~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~ 227 (322)
...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+..
T Consensus 101 l~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp----------------~t~~IR~~~~~~--YtpE 162 (287)
T cd03346 101 YREDNIPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFH----------------CTQYVRHSSDPF--YTPE 162 (287)
T ss_pred CCcCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc----------------ceeeecCccccC--CCCC
Confidence 455566667789999987 5999999999 778888888877664 245666654421 1111
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhccCCccC-chHHHHHHHHhhcCcEE
Q 020732 228 ENM-IGEE--SAQSQVERFENYCKEVESTAAWG-GELELRALTHCLRKHIM 274 (322)
Q Consensus 228 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WG-G~lEL~ALA~~l~~~I~ 274 (322)
++. -+.. ..-.....|.+|...+-.- ..| ..-+|.-||++|=-.|+
T Consensus 163 PDifHEl~GHvPlLadp~FA~f~q~~G~~-~l~a~~~~i~~LarlYWfTVE 212 (287)
T cd03346 163 PDTCHELLGHVPLLADPSFAQFSQEIGLA-SLGASDEDIQKLATCYFFTVE 212 (287)
T ss_pred CchHHHHhccchhhcCHHHHHHHHHHHHH-hcCCCHHHHHHHhHhhhhhcc
Confidence 110 0000 0011235688888875432 232 55567778888765554
No 50
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=29.87 E-value=2.6e+02 Score=21.58 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=46.7
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020732 21 QKKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89 (322)
Q Consensus 21 ~~~~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~------~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l 89 (322)
.+......++...|+++..++...+..++..+ ++.|. .+=..+.+++..+..+|......=+-++
T Consensus 44 ~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~~~~~~~~~~~l~~~~~~~~~~~ 114 (125)
T PF13801_consen 44 PEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEALLEEIREAQAELRQERLEHLLEI 114 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567889999999999988888877665 35554 5567888888888888887766555444
No 51
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=29.38 E-value=60 Score=33.96 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=41.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 020732 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (322)
Q Consensus 28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~ 84 (322)
|-..++---|+.+||++|..|. |+.+.++--|+.+...+..||-.|++.|+.
T Consensus 33 E~dr~~WElERaElqariAfLq-----gErk~qenlk~dl~rR~kmlE~~lkeerak 84 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIAFLQ-----GERKGQENLKMDLVRRIKMLEFALKEERAK 84 (577)
T ss_pred hhhhhheehhhhhHHHHHHHHh-----cchhhhHHHHHHHHHHHhcccchhHHhhhh
Confidence 3445667779999999999995 333355677889999999999999998864
No 52
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=29.30 E-value=91 Score=30.31 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020732 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 87 (322)
Q Consensus 34 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~ 87 (322)
+-|...+|+++|..+++....+ .-.+.++|.+||..+.+.-..--.
T Consensus 7 fEkpi~ele~kI~~l~~~~~~~--------~~~~~~eI~~Le~~~~~~~~~iy~ 52 (317)
T COG0825 7 FEKPIAELEAKIDELKALAEEN--------DVDLSDEIERLEKRLAELTKKIYS 52 (317)
T ss_pred hhhHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHhhHHHHhhhhhc
Confidence 4578899999999999877533 347999999999887765544333
No 53
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.77 E-value=2.2e+02 Score=22.69 Aligned_cols=45 Identities=11% Similarity=0.391 Sum_probs=30.9
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHH
Q 020732 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (322)
Q Consensus 25 ~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~r 81 (322)
.+.+++.......+..|...|..+.++ -+.+..++..++.+|.+-
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~------------~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQ------------EEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 356777777777788888877776543 346677777777776653
No 54
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=1.9e+02 Score=28.11 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHH----HHHHHHH
Q 020732 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSA----KLREKHA 83 (322)
Q Consensus 31 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~----el~~rh~ 83 (322)
+.+-|+-+++|-..|+.||..+. +|.+||..++. .+.+||+
T Consensus 19 L~~ir~rk~qL~deIq~Lk~Ei~------------ev~~eid~~~~~e~skt~q~~k 63 (395)
T KOG0930|consen 19 LENIRRRKQELLDEIQRLKDEIA------------EVMEEIDNLESTEESKTKQRNK 63 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhhhhccccchhhHHHhH
Confidence 34445556667777777776666 77777777754 4445554
No 55
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.50 E-value=2.3e+02 Score=21.99 Aligned_cols=43 Identities=26% Similarity=0.429 Sum_probs=33.1
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 26 ~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
+.+++...-...++.|+..|..|++. .+.+..++..++..|.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~------------~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQ------------LKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 56788888888899999998888753 44777777777777654
No 56
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.32 E-value=1.8e+02 Score=23.31 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=34.6
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 25 ~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
.|.++-...-.+-++.|+..+..+.+... .+..++..++..|.+.+.
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~------------~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELA------------ELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHCHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhc
Confidence 45666667777777788887777765444 788888888888887764
No 57
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=28.17 E-value=77 Score=29.58 Aligned_cols=108 Identities=12% Similarity=0.168 Sum_probs=61.1
Q ss_pred HHhcccCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcc-ccc
Q 020732 147 EQSNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS-DFL 222 (322)
Q Consensus 147 e~~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d-~F~ 222 (322)
+.-+.+.++.--.+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+ +|.
T Consensus 43 ~~L~l~~d~IPql~~vn~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp----------------~t~~iR~~~~~~Yt 106 (228)
T cd03348 43 EKLGLPTDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLANRRFP----------------VTNFIRRPEELDYL 106 (228)
T ss_pred HHcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCCCc----------------eeeeecCccccCCC
Confidence 3444566666667789999988 8999999998 777788877775543 3345666544 222
Q ss_pred cccccccc-cchh--hhhhhhhhHHHHHHHhccCCccCch-HHHHHHHHhhcCcE
Q 020732 223 PFYLSENM-IGEE--SAQSQVERFENYCKEVESTAAWGGE-LELRALTHCLRKHI 273 (322)
Q Consensus 223 pfl~~~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~-lEL~ALA~~l~~~I 273 (322)
| .++. -+.. ..-.....|.+|...+-.-+.=... -++.-||++|=-.|
T Consensus 107 p---EPDifHe~fGHvPmL~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTV 158 (228)
T cd03348 107 Q---EPDIFHDIFGHVPMLTNPVFADFMQAYGKGGLKATGLEDRALLARLYWYTV 158 (228)
T ss_pred C---CcHHHHHHhcccHhhcCHHHHHHHHHHHHHHhCCCCHHHHHHHhHhhhhhc
Confidence 1 1110 0000 0011234678887775332222222 45666777774443
No 58
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.51 E-value=2.3e+02 Score=31.73 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccC
Q 020732 28 DEMLSRHRKEISQLQNKETELKKAAAKG 55 (322)
Q Consensus 28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~ 55 (322)
-.|...|-+|.|||+.+.+..+..-.|+
T Consensus 1081 k~LK~~~e~e~kElk~~l~kkr~e~ik~ 1108 (1189)
T KOG1265|consen 1081 KALKESLEKETKELKKKLDKKRMEDIKV 1108 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566677777777777666554444443
No 59
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.55 E-value=1.6e+02 Score=29.28 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=46.8
Q ss_pred cccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020732 22 KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKEL 86 (322)
Q Consensus 22 ~~~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El 86 (322)
...||.++=++|=+.|..+|...+..++....+.+ +.+..--.|...++.|+..|..=|-.++
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l~l~~~ 149 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSLKLEEL 149 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHhhcccc
Confidence 35788999999999999999999988876544332 1123445678899999998888765544
No 60
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=26.52 E-value=2.7e+02 Score=20.65 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCCh---hHHhhhhHHHHHHHHHHHHHH
Q 020732 28 DEMLSRHRKEISQLQNKETELKKAAAKGSK---AEQKAKKKQVEEEISRLSAKL 78 (322)
Q Consensus 28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k---~~~Kk~kK~v~~e~~~le~el 78 (322)
+--++|-|+|-+|+-+-|..|-- +.-|- +-=||||=.+.+++.+||..+
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~--~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIA--TGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH--hCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44589999999999988877754 22221 122466778889999988754
No 61
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=26.50 E-value=71 Score=32.85 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=61.3
Q ss_pred cCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccc-ccccccc
Q 020732 152 VSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSD-FLPFYLS 227 (322)
Q Consensus 152 ~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~-F~pfl~~ 227 (322)
..++.--.+.+...|.+ -|+.++.|+| ...=+|..+|+..+. ++.|||.+.+- |.| .
T Consensus 231 ~~d~IPql~dvs~~L~~~TGw~~~pV~Gll~~r~F~~~LA~R~F~----------------~tqyIR~~~~~~Ytp---E 291 (464)
T TIGR01270 231 REDNIPQLEDVSKFLKAKTGFRLRPVAGYLSARDFLSGLAFRVFH----------------CTQYVRHSADPFYTP---E 291 (464)
T ss_pred CccCCCCHHHHHHHHHhccCCEEEeccccCCHHHHHHHHhcCccc----------------eeeeeccccccCcCC---C
Confidence 44455556678888885 4999999998 778888888887765 24566665442 221 1
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhccCCccC-chHHHHHHHHhhcCcEE
Q 020732 228 ENM-IGEE--SAQSQVERFENYCKEVESTAAWG-GELELRALTHCLRKHIM 274 (322)
Q Consensus 228 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WG-G~lEL~ALA~~l~~~I~ 274 (322)
++. -+.. ..-.....|.+|...+-.- ..| ..-+|.-||++|=..|+
T Consensus 292 PDi~HEl~GHvPlLadp~FA~f~q~~G~~-sl~a~~e~i~~LarlyWfTVE 341 (464)
T TIGR01270 292 PDTCHELLGHMPLLADPSFAQFSQEIGLA-SLGASEEDIKKLATLYFFTIE 341 (464)
T ss_pred CchHHHHhcccchhcCHHHHHHHHHHHHh-hcCCCHHHHHHHhHhhhhhhh
Confidence 110 0000 0011235688888875432 233 45567778888755544
No 62
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=26.17 E-value=1.2e+02 Score=28.58 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=36.5
Q ss_pred HHhcccCCchhHHHHHHHHhc-cCCCeeeeeCC--CCchhhHHHHHHHhh
Q 020732 147 EQSNIVSDRTVEDEKLEKKLG-PLGLTVNDIKP--DGHCLYRAVEDQLAH 193 (322)
Q Consensus 147 e~~~~~~~r~~E~~~l~~~L~-~~gL~i~~I~~--DGnCLFrAIa~QL~~ 193 (322)
+.-+.+.++.--.+.|.+.|. .-|+.++.|+| ...=+|..+|+-.+.
T Consensus 43 ~~lgl~~d~IPql~~vn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp 92 (248)
T TIGR01267 43 EQLGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPFQTFFEHLANRRFP 92 (248)
T ss_pred HHcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc
Confidence 344556666666778999998 78999999999 888888888876654
No 63
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=25.74 E-value=3.9e+02 Score=23.54 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=25.3
Q ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 020732 24 QETRDEMLSRHRKEISQLQNKETELKKAAAK 54 (322)
Q Consensus 24 ~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k 54 (322)
...++.+.++|-.|+..+|..+..+.+...+
T Consensus 46 ~~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 46 SADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567889999999999888888888876664
No 64
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.18 E-value=2.4e+02 Score=19.73 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 020732 41 LQNKETEL 48 (322)
Q Consensus 41 Lq~~i~~~ 48 (322)
|+..++.|
T Consensus 30 le~~~~~L 37 (54)
T PF07716_consen 30 LEQEVQEL 37 (54)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 65
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=24.87 E-value=54 Score=26.14 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=24.0
Q ss_pred chhHHHHHHHHhccCCCeeeeeCCCC-chhhHHHHHHHh
Q 020732 155 RTVEDEKLEKKLGPLGLTVNDIKPDG-HCLYRAVEDQLA 192 (322)
Q Consensus 155 r~~E~~~l~~~L~~~gL~i~~I~~DG-nCLFrAIa~QL~ 192 (322)
|..=.+.|...|...|+ || .|+-|||...-.
T Consensus 6 R~~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~ 37 (95)
T smart00718 6 RRLLYEALENLLDQLGF-------NGRACLLRAICESAQ 37 (95)
T ss_pred HHHHHHHHHHHHHHcCC-------CchhhHHHHHHHccc
Confidence 44456778888888886 77 999999987554
No 66
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.62 E-value=2.9e+02 Score=24.98 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=34.4
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 25 ~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
..+-.|+++|..|.+-|+.++-..+.... .-.++-|+.+.++-++..++..
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r-----~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQER-----ELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34577999999999999998655544332 0124456777777777776653
No 67
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=23.42 E-value=12 Score=32.46 Aligned_cols=38 Identities=37% Similarity=0.474 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 35 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
-+.+++|+.+|..|++.+. ...-.+.++|.+|+..+..
T Consensus 6 Ek~I~ele~kI~eL~~~~~--------~~~~d~~~ei~~Le~k~~~ 43 (145)
T PF03255_consen 6 EKPIKELEEKIEELKKLAE--------EGGIDLSDEIASLEEKLEK 43 (145)
T ss_dssp CHHHHHCCCCCC----------------------TCHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHH
Confidence 3678889999999987665 2234678888888887764
No 68
>PRK10963 hypothetical protein; Provisional
Probab=23.12 E-value=55 Score=30.00 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.6
Q ss_pred HHHHHHHhcCcccccc
Q 020732 208 QMVAAYMRDHSSDFLP 223 (322)
Q Consensus 208 ~~~a~yi~~n~d~F~p 223 (322)
..+++|+++|||.|..
T Consensus 6 ~~V~~yL~~~PdFf~~ 21 (223)
T PRK10963 6 RAVVDYLLQNPDFFIR 21 (223)
T ss_pred HHHHHHHHHCchHHhh
Confidence 4689999999999864
No 69
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=22.60 E-value=2.5e+02 Score=27.37 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 35 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
+-|+-+|..-|+..++.+.+..- --=++...+.+.+|..||+.+-.
T Consensus 340 ~d~lnELE~~i~~~r~~~~~AtN---PiL~~RF~~~~n~l~kElElkrk 385 (392)
T COG5414 340 ADELNELEKGIEEKRRQMESATN---PILQKRFESQLNVLLKELELKRK 385 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777889999888887752211 13368899999999999887653
No 70
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=22.55 E-value=1.5e+02 Score=26.89 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=44.6
Q ss_pred cCCCCccccccc--HHHHHHhHHH-------HHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 020732 15 HSGDASQKKQET--RDEMLSRHRK-------EISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKE 85 (322)
Q Consensus 15 ~~~~~~~~~~~~--~e~l~~rHrk-------E~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~E 85 (322)
+.++..+-..-. .+.|..+||+ |-.|+..+++.|++.=||+.- .-|++++....+.=.-|++....|
T Consensus 18 ~~~~~~Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae----~~k~~m~~rFQ~~v~aLE~e~~~e 93 (193)
T PF12925_consen 18 HPDPENEHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAE----QFKKEMTQRFQKTVQALEQEAAAE 93 (193)
T ss_dssp SSTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554433322 3668888884 556777888888776664332 345677777777666666666666
Q ss_pred HHHhc
Q 020732 86 LASLG 90 (322)
Q Consensus 86 l~~l~ 90 (322)
-..|.
T Consensus 94 r~qL~ 98 (193)
T PF12925_consen 94 RQQLV 98 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 71
>PRK10780 periplasmic chaperone; Provisional
Probab=22.32 E-value=5.1e+02 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020732 72 SRLSAKLREKHAKELASL 89 (322)
Q Consensus 72 ~~le~el~~rh~~El~~l 89 (322)
..++.+|..|..+++..+
T Consensus 104 ~~~qq~~~~~~~e~~~~i 121 (165)
T PRK10780 104 QAFEQDRRRRSNEERNKI 121 (165)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555665665544
No 72
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.15 E-value=5.5e+02 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=12.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 020732 27 RDEMLSRHRKEISQLQNKETELK 49 (322)
Q Consensus 27 ~e~l~~rHrkE~k~Lq~~i~~~k 49 (322)
++.|+.|=|.|...+-+.++.+-
T Consensus 82 RGlLL~rvrde~~~~l~~y~~l~ 104 (189)
T PF10211_consen 82 RGLLLLRVRDEYRMTLDAYQTLY 104 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555544444433
No 73
>PF04874 Mak16: Mak16 protein C-terminal region; InterPro: IPR006958 The function of these proteins is unknown. The yeast orthologues have been implicated in cell cycle progression and biogenesis of 60S ribosomal subunits. The Schistosoma mansoni (Blood fluke) Mak16 has been shown to target protein transport to the nucleolus [].
Probab=21.67 E-value=1.7e+02 Score=23.77 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=18.5
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Q 020732 123 PSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEK 164 (322)
Q Consensus 123 ~sKa~~Rr~~r~~~~~~r~~~i~~e~~~~~~~r~~E~~~l~~ 164 (322)
++|+..||++++.+.+...++|. ..||.+.|..
T Consensus 1 I~kK~eRRE~~RE~KAl~AA~le---------~~IEkELLeR 33 (101)
T PF04874_consen 1 IKKKVERREKRREEKALIAAKLE---------KSIEKELLER 33 (101)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 35667777776665555444443 3456555544
No 74
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.41 E-value=1.2e+02 Score=20.63 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=21.7
Q ss_pred HHHHHhccCCccCchHHHHHHHHhhcCcE
Q 020732 245 NYCKEVESTAAWGGELELRALTHCLRKHI 273 (322)
Q Consensus 245 ~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I 273 (322)
.++.++.+...+=.--.+.+||.+|++++
T Consensus 24 ~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 24 STISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred chhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 44555555566667788999999999986
No 75
>PF15261 DUF4591: Domain of unknown function (DUF4591)
Probab=21.23 E-value=1.1e+02 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=19.5
Q ss_pred CCCCcccccccHHHHHHhHHHHHHHHHH
Q 020732 16 SGDASQKKQETRDEMLSRHRKEISQLQN 43 (322)
Q Consensus 16 ~~~~~~~~~~~~e~l~~rHrkE~k~Lq~ 43 (322)
..+.+-..-..+|.|.+||.+|+....+
T Consensus 100 ~~e~~~~~ls~Le~L~~RHe~ek~~Va~ 127 (134)
T PF15261_consen 100 QDEASLPELSELEMLEQRHEREKQAVAA 127 (134)
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444579999999999887655
No 76
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.96 E-value=1.1e+02 Score=31.38 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHH
Q 020732 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEI 71 (322)
Q Consensus 31 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~ 71 (322)
.++||+|--++-. +|.|-+-+++|+++|.+.+++
T Consensus 231 a~kHrqeyeei~~-------qAkkre~k~~ker~k~~eer~ 264 (586)
T KOG2223|consen 231 AKKHRQEYEEIVK-------QAKKRERKEAKERKKMVEERN 264 (586)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 6899999877543 333333334445555555444
No 77
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=20.93 E-value=1.3e+02 Score=29.39 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=61.1
Q ss_pred cccCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 020732 150 NIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 226 (322)
Q Consensus 150 ~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~ 226 (322)
+...++.--.+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+.
T Consensus 100 gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp----------------~t~yIR~~~~~~--Ytp 161 (306)
T cd03347 100 GFSEDNIPQLEDVSNFLQTCTGFRLRPVAGLLSSRDFLAGLAFRVFH----------------STQYIRHPSKPM--YTP 161 (306)
T ss_pred CCCcCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHHhcCccc----------------eeeeecCccccC--CCC
Confidence 4455666666779999998 5999999999 777788888876654 245666654421 111
Q ss_pred ccccc-chh--hhhhhhhhHHHHHHHhccCCccCchHHHHHHHHhhcCcEE
Q 020732 227 SENMI-GEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 274 (322)
Q Consensus 227 ~~~~~-~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~ 274 (322)
.++.- +.. ..-.....|.+|...+-.-+.=...-++.-||++|=-.|+
T Consensus 162 EPDifHEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (306)
T cd03347 162 EPDICHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYIEKLATVYWFTVE 212 (306)
T ss_pred CCchHHHHhccchhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhhheeeeec
Confidence 11100 000 0001134688888775432222233456667777754443
No 78
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=20.40 E-value=1e+02 Score=31.43 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=60.9
Q ss_pred ccCCchhHHHHHHHHhccC-CCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccc
Q 020732 151 IVSDRTVEDEKLEKKLGPL-GLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 227 (322)
Q Consensus 151 ~~~~r~~E~~~l~~~L~~~-gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~ 227 (322)
...++.--.+.+...|.+. |+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+..
T Consensus 203 ~~~d~IPql~dvs~~L~~~TGw~~~pV~Gll~~~~F~~~LA~r~F~----------------~t~yiR~~~~~~--YtpE 264 (436)
T TIGR01268 203 FREDNIPQLEDVSQFLQDCTGFTLRPVAGLLSSRDFLAGLAFRVFH----------------STQYIRHHSKPM--YTPE 264 (436)
T ss_pred CCccCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc----------------eeeeeccccccc--CCCC
Confidence 3445555666788999884 999999998 777788888877665 244666654421 1111
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhccCCccCchHHHHHHHHhhcCcEE
Q 020732 228 ENM-IGEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 274 (322)
Q Consensus 228 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~ 274 (322)
++. -+.. ..-.....|.+|...+-.-+.=...-+|.-||++|=..|+
T Consensus 265 PDi~Hel~GHvPlla~p~fA~f~q~~G~~~l~a~~~~i~~LarlyWfTVE 314 (436)
T TIGR01268 265 PDICHELLGHVPLFADVEFAQFSQEIGLASLGAPDDYIEKLATLYWFTIE 314 (436)
T ss_pred ChhHHHHhccchhhCCHHHHHHHHHHHHhhcCCCHHHHHHHhhhheeeec
Confidence 110 0000 0001235688888875433222233456678888755554
No 79
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.38 E-value=4.5e+02 Score=21.67 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=29.9
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 020732 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 26 ~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~ 80 (322)
+.+++.....+.+.-+..+|..+.|. .+.+...+..++..|.+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq------------~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQ------------EKKLREKLKELQAKINE 110 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 56778888888888888888877643 34566666666666554
No 80
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=3.4e+02 Score=29.02 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=29.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 27 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 27 ~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
.+....|-..|.++|+..|..||+-.- .+..+|+++-.++..++.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie------------~L~~~l~~~~r~~~~~~~ 471 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIE------------KLESELERFRREVRDKVR 471 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHh
Confidence 356677777777777777777765444 566666666666665543
No 81
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=20.09 E-value=1.3e+02 Score=30.88 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=59.1
Q ss_pred cCCchhHHHHHHHHhcc-CCCeeeeeCC--CCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccc-ccccccc
Q 020732 152 VSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSD-FLPFYLS 227 (322)
Q Consensus 152 ~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~-F~pfl~~ 227 (322)
..++.--.+.+...|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+. |.| .
T Consensus 225 ~~d~IPqL~dvs~~L~~~TGw~l~pV~GLl~~rdF~~~LA~RvFp----------------~TqyIR~~~~~~Ytp---E 285 (457)
T TIGR01269 225 NSESIPQLQTISEFLHRTTGFRLRPVAGLLSARDFLASLAFRVFQ----------------CTQYIRHHSSPMHTP---E 285 (457)
T ss_pred CcCCCCCHHHHHHHHHhccCCEEEeccccCCHHHHHHHHhcCccc----------------ceeeecCccccCCCC---C
Confidence 44455566779999998 5999999999 888888888887765 23566665442 221 1
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhccCCccC-chHHHHHHHHhhcCcE
Q 020732 228 ENM-IGEE--SAQSQVERFENYCKEVESTAAWG-GELELRALTHCLRKHI 273 (322)
Q Consensus 228 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WG-G~lEL~ALA~~l~~~I 273 (322)
++. -+.. ..-.....|.+|...+-.-+ .| ..-+|.-||++|=..|
T Consensus 286 PDi~HEl~GHvPlLadp~FA~F~q~~G~as-l~As~e~i~~LarlYWfTV 334 (457)
T TIGR01269 286 PDCIHELLGHMPMLADRQFAQFSQEIGLAS-LGASEEEIEKLSTLYWFTV 334 (457)
T ss_pred CchHHHHhcccccccCHHHHHHHHHHHHHh-cCCCHHHHHHHhHhHhhhh
Confidence 110 0000 00112356888888754322 22 3345556777764333
Done!