Query 020732
Match_columns 322
No_of_seqs 237 out of 1045
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 4.6E-40 1.6E-44 292.1 9.7 145 147-321 35-181 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 1.8E-35 6E-40 268.1 11.0 123 167-321 16-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 1.6E-31 5.4E-36 237.4 11.8 120 171-322 31-160 (185)
4 3phu_A RNA-directed RNA polyme 100.0 1.8E-31 6.1E-36 242.4 10.9 120 171-322 31-160 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 5.5E-27 1.9E-31 215.3 10.8 99 202-322 131-231 (234)
6 2zfy_A Ubiquitin thioesterase 99.9 4.9E-25 1.7E-29 202.3 9.3 98 202-321 134-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.9 5.6E-23 1.9E-27 192.5 7.5 146 157-322 64-274 (284)
8 4ddg_A Ubiquitin-conjugating e 99.8 2E-21 6.9E-26 190.8 10.5 134 166-321 203-399 (399)
9 3dkb_A Tumor necrosis factor, 98.7 3E-08 1E-12 94.7 8.9 138 169-321 110-282 (390)
10 3zrh_A Ubiquitin thioesterase 98.6 7.5E-08 2.6E-12 93.5 8.5 139 170-321 188-348 (454)
11 3lay_A Zinc resistance-associa 52.9 40 0.0014 28.8 7.3 57 23-83 72-134 (175)
12 3he5_B Synzip2; heterodimeric 47.3 56 0.0019 21.6 5.6 36 31-78 12-47 (52)
13 1l8d_A DNA double-strand break 45.4 46 0.0016 25.5 6.1 41 27-79 62-102 (112)
14 3i00_A HIP-I, huntingtin-inter 41.4 1.1E+02 0.0039 24.4 7.9 50 25-82 11-60 (120)
15 3twe_A Alpha4H; unknown functi 39.2 26 0.00089 20.3 2.6 16 35-50 7-22 (27)
16 3mq7_A Bone marrow stromal ant 38.4 66 0.0022 25.8 5.8 15 35-49 70-84 (121)
17 1jad_A PLC-beta, phospholipase 35.7 1.1E+02 0.0039 27.5 7.7 30 61-90 100-129 (251)
18 4h22_A Leucine-rich repeat fli 35.5 64 0.0022 25.3 5.2 45 25-81 40-84 (103)
19 2vof_A BCL-2-related protein A 34.2 33 0.0011 28.5 3.7 66 201-269 37-104 (157)
20 1jad_A PLC-beta, phospholipase 34.2 2.1E+02 0.007 25.9 9.2 20 27-46 125-144 (251)
21 1gmj_A ATPase inhibitor; coile 33.7 46 0.0016 25.2 4.0 22 68-90 57-78 (84)
22 1ci6_A Transcription factor AT 33.2 97 0.0033 21.7 5.6 35 33-79 20-54 (63)
23 3azd_A Short alpha-tropomyosin 32.9 12 0.00042 23.9 0.6 29 38-78 6-34 (37)
24 2eqb_B RAB guanine nucleotide 28.1 1.9E+02 0.0066 22.3 6.8 42 33-79 16-57 (97)
25 1gmj_A ATPase inhibitor; coile 27.5 1.7E+02 0.0058 22.0 6.2 23 31-53 53-75 (84)
26 2xu6_A MDV1 coiled coil; prote 27.1 1E+02 0.0034 22.6 4.7 30 36-77 21-50 (72)
27 4hw4_A Induced myeloid leukemi 26.3 50 0.0017 27.5 3.5 66 202-271 39-106 (157)
28 3hnw_A Uncharacterized protein 26.1 1.4E+02 0.0049 24.2 6.2 19 62-80 117-135 (138)
29 3viq_B Mating-type switching p 25.5 53 0.0018 24.9 3.1 29 38-78 3-31 (85)
30 2nl9_A Fusion protein consisti 25.4 47 0.0016 27.4 3.2 65 202-270 39-105 (157)
31 3bas_A Myosin heavy chain, str 24.3 1.4E+02 0.0047 22.3 5.4 47 33-84 11-57 (89)
32 2dgc_A Protein (GCN4); basic d 24.1 1.1E+02 0.0037 21.5 4.4 14 66-79 48-61 (63)
33 3q8j_A Asteropsin A, ABU8-1; c 23.0 17 0.00057 22.6 -0.1 18 167-184 19-36 (37)
34 3nmd_A CGMP dependent protein 21.9 2.4E+02 0.0081 20.6 6.6 37 17-53 11-50 (72)
35 3ol1_A Vimentin; structural ge 21.8 2.9E+02 0.01 21.6 8.5 59 28-91 51-115 (119)
36 1o0l_A Apoptosis regulator BCL 21.7 1.2E+02 0.004 25.8 5.1 64 202-269 47-111 (188)
37 4b4s_A BCL-2-like protein 10; 21.6 94 0.0032 26.4 4.3 64 201-272 36-102 (175)
38 3pzp_A DNA polymerase kappa; D 21.4 65 0.0022 31.9 3.8 73 120-192 32-109 (517)
39 2w3l_A BCL2-XL, apoptosis regu 21.0 1.1E+02 0.0038 24.7 4.6 65 201-269 30-95 (144)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=4.6e-40 Score=292.09 Aligned_cols=145 Identities=23% Similarity=0.399 Sum_probs=111.2
Q ss_pred HHhcccCCchhHHHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 020732 147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 226 (322)
Q Consensus 147 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~ 226 (322)
|+...+..+..|..-+..+|..+||.++.||+|||||||||++||++ .+..|..||+.||+||+.|+++|.|||.
T Consensus 35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g-----~~~~h~~LR~~vv~yi~~n~d~f~~Fv~ 109 (185)
T 3pfy_A 35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVT 109 (185)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHTHHHHTTCC-
T ss_pred HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566899999999999999999999999999999999999998 4678999999999999999999999995
Q ss_pred cccccchhhhhhhhhhHHHHHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCCceE-e-CCCCCCCCCCCCCCeEEEE
Q 020732 227 SENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE-M-GKEYSNGGSDSSGSSIILS 304 (322)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~~-~-g~e~~~~~~~~~~~~I~L~ 304 (322)
. +|++||.+|+++++|||++||+|||++|+++|+||+.+++++. + |.+. ...++|+|+
T Consensus 110 ~--------------~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~ 169 (185)
T 3pfy_A 110 E--------------DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVS 169 (185)
T ss_dssp ------------------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEE
T ss_pred c--------------cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEE
Confidence 3 5999999999999999999999999999999999998875544 3 3222 236899999
Q ss_pred eccCCCCCCCccccccc
Q 020732 305 YHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 305 Y~~~~y~LGeHYnSv~p 321 (322)
||+ |+|||||++
T Consensus 170 Y~~-----~~HYnSv~~ 181 (185)
T 3pfy_A 170 YHR-----NIHYNSVVN 181 (185)
T ss_dssp EET-----TTEEEEEEC
T ss_pred ECC-----CCCcccccC
Confidence 998 599999985
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=100.00 E-value=1.8e-35 Score=268.07 Aligned_cols=123 Identities=20% Similarity=0.385 Sum_probs=109.3
Q ss_pred ccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHH
Q 020732 167 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENY 246 (322)
Q Consensus 167 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y 246 (322)
...||.+++||+|||||||||++|| + .+..|..||+.||+||+.|+++|.+|+.+ .+|++|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~-----~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-------------~~~e~Y 76 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-F-----KQDSVRDLREMVSKEVLNNPVKFNDAILD-------------KPNKDY 76 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-H-----SSCCSHHHHHHHHHHHHHCTTTTCHHHHT-------------SCHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-C-----CchHHHHHHHHHHHHHHHCHHHHhhhhcC-------------CCHHHH
Confidence 4568999999999999999999999 5 35689999999999999999999877754 369999
Q ss_pred HHHhccCCccCchHHHHHHHHhhcCcEEEEECCC-CceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732 247 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 247 ~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~-~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p 321 (322)
|.+|+++++|||++||+|||++|++||.||+..+ +.+.||+++ ..++|+|+|+ |+|||||++
T Consensus 77 ~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~ 139 (212)
T 3by4_A 77 AQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM 139 (212)
T ss_dssp HHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred HHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence 9999999999999999999999999999999874 666788654 2679999997 799999975
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=1.6e-31 Score=237.39 Aligned_cols=120 Identities=17% Similarity=0.308 Sum_probs=100.3
Q ss_pred CeeeeeCCCCchhhHHHHHHHhhccCCCCcch-----HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHH
Q 020732 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN 245 (322)
Q Consensus 171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~ 245 (322)
+.+..||||||||||||++||++.. +.. |..||+.|++||++|+++| +. ..+|++
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~----~~~~~~~~~~~LR~~~~~yi~~~~~~~---~~-------------~~~~~~ 90 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LV-------------GLSLED 90 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTC----CTTTHHHHHHHHHHHHHHHGGGCTTHH---HH-------------CCCHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChHhh---hc-------------CCCHHH
Confidence 7788999999999999999998741 234 8999999999999999983 22 147999
Q ss_pred HHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCCc-----eEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732 246 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320 (322)
Q Consensus 246 Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~-----~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~ 320 (322)
||++|+++++|||++||+|||++|+++|+|++.+++. +.||++. ..++|+|+|++ |+|||||+
T Consensus 91 Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~ 158 (185)
T 3phx_A 91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR 158 (185)
T ss_dssp HHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred HHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhce
Confidence 9999999999999999999999999999999987654 4466432 26899999984 59999998
Q ss_pred cC
Q 020732 321 PI 322 (322)
Q Consensus 321 p~ 322 (322)
|+
T Consensus 159 ~~ 160 (185)
T 3phx_A 159 IL 160 (185)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=1.8e-31 Score=242.43 Aligned_cols=120 Identities=16% Similarity=0.296 Sum_probs=102.1
Q ss_pred CeeeeeCCCCchhhHHHHHHHhhccCCCCcch-----HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHH
Q 020732 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN 245 (322)
Q Consensus 171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~ 245 (322)
+.+.+||||||||||||++||++.. +.. |..||+.|++||+.|+++| +. ..+|++
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~----~~~~~~~~h~~LR~~va~yi~~n~d~~---~~-------------~~~fee 90 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LV-------------GLSLED 90 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTC----CTTTHHHHHHHHHHHHHHHGGGCHHHH---HH-------------CCCHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChhhh---hc-------------CCCHHH
Confidence 7889999999999999999998741 233 8999999999999999983 22 147999
Q ss_pred HHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCC-----ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732 246 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320 (322)
Q Consensus 246 Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~-----~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~ 320 (322)
||++|+++++|||++||+|||++|+++|+||+.+++ .+.||++. ..++|+|+|++ |+|||||+
T Consensus 91 Y~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~ 158 (219)
T 3phu_A 91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR 158 (219)
T ss_dssp HHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred HHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhhe
Confidence 999999999999999999999999999999998766 34566542 26899999985 59999998
Q ss_pred cC
Q 020732 321 PI 322 (322)
Q Consensus 321 p~ 322 (322)
|+
T Consensus 159 ~~ 160 (219)
T 3phu_A 159 IL 160 (219)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.94 E-value=5.5e-27 Score=215.25 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCCccCchHHHHHHHHhhcCcEEEEECCC
Q 020732 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF 280 (322)
Q Consensus 202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~ 280 (322)
.+..||..++.||+.|+++|.|||.++ .+|++||. .|+.+++|||++||+|||++|++||.|++.++
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~------------~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~ 198 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDE 198 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCC------------CCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCC
Confidence 357799999999999999999999652 26999999 79999999999999999999999999999988
Q ss_pred CceE-eCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732 281 PDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322 (322)
Q Consensus 281 ~~~~-~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~ 322 (322)
+... ....|.. ...+.|+|+|+. +|||+|+|.
T Consensus 199 ~~~~~~~~~~~~----~~~~~I~LlY~p------gHYdily~~ 231 (234)
T 1tff_A 199 MDTALNHHVFPE----AATPSVYLLYKT------SHYNILYAA 231 (234)
T ss_dssp ------CCCCCC----CSSCSEEEEEET------TEEEEEEEC
T ss_pred CCCccccccCCC----CCCCeEEEEECC------CCceecccC
Confidence 7522 2223432 346789999984 699999984
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.91 E-value=4.9e-25 Score=202.25 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCCccCchHHHHHHHHhhcCcEEEEECCC
Q 020732 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF 280 (322)
Q Consensus 202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~ 280 (322)
.+..||..++.||+.|+++|.|||.++ .+|++||. .|+.+++|||++||+|||++|++||.|++.++
T Consensus 134 ~v~~lR~lta~yi~~~~d~f~pFi~~~------------~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~ 201 (234)
T 2zfy_A 134 LVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDR 201 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGCCSS------------CCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCC
Confidence 467899999999999999999999752 36999997 69999999999999999999999999999887
Q ss_pred Cce--EeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732 281 PDV--EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 281 ~~~--~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p 321 (322)
+.. +.+..|.. +..++|+|+|+. +|||+|+|
T Consensus 202 ~~~~~v~~~~f~~----~~~p~I~LlY~p------gHYdiLy~ 234 (234)
T 2zfy_A 202 GEGGTTNPHIFPE----GSEPKVYLLYRP------GHYDILYK 234 (234)
T ss_dssp CCSSCCEEEEEST----TCCCSEEEEEET------TEEEEEEC
T ss_pred CCCCcccceeCCC----CCCCeEEEEECC------CCcccCCC
Confidence 641 22234432 236789999985 59999997
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.87 E-value=5.6e-23 Score=192.48 Aligned_cols=146 Identities=19% Similarity=0.292 Sum_probs=107.2
Q ss_pred hHHHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhcc-----------------------CCC---------------
Q 020732 157 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLS-----------------------GGA--------------- 198 (322)
Q Consensus 157 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~-----------------------~~~--------------- 198 (322)
+=..++..+- ..--.++.|.|||||+|||++..+...- .|.
T Consensus 64 ~~~~Ki~~L~-~~Y~~~R~~RGDGNCFyRAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~el 142 (284)
T 4dhi_B 64 AFLSKATELS-EVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEF 142 (284)
T ss_dssp HHHHHHHHHH-TTEEEEECBCCSTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccceeeecCCCchhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHH
Confidence 4445554443 3445688999999999999998764320 000
Q ss_pred -----------------------CcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCC
Q 020732 199 -----------------------SPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTA 254 (322)
Q Consensus 199 -----------------------~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~ 254 (322)
+..-+..||..++.||+.|+++|.|||.++ .++++||. .|+.++
T Consensus 143 l~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~------------~~v~~yC~~eVe~~~ 210 (284)
T 4dhi_B 143 LEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEG------------MTVAQYCEQEIEPMW 210 (284)
T ss_dssp HHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT------------CCHHHHHHHHTSSTT
T ss_pred HHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCC------------CCHHHHHHHhceehh
Confidence 112367899999999999999999999752 36999999 799999
Q ss_pred ccCchHHHHHHHHhhcCcEEEEECCCC---ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732 255 AWGGELELRALTHCLRKHIMIYSGSFP---DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322 (322)
Q Consensus 255 ~WGG~lEL~ALA~~l~~~I~V~~~~~~---~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~ 322 (322)
.|||+++|+|||++|++||.|++.++. .+.....| +++.....+.|+|.|.. .|||.|+|.
T Consensus 211 ~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p~~~~~~~p~I~LLYrp------gHYDILY~~ 274 (284)
T 4dhi_B 211 KDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-PSDDQQIAPEITLLYRP------GHYDVIYKK 274 (284)
T ss_dssp CCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-SCCCSCCCCSEEEEEET------TEEEEEEEC
T ss_pred hcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-CCCCCCCCCEEEEeecC------CCccccccC
Confidence 999999999999999999999998752 11110013 11111234789999984 799999873
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.85 E-value=2e-21 Score=190.79 Aligned_cols=134 Identities=21% Similarity=0.307 Sum_probs=103.5
Q ss_pred hccCCCeeeeeCCCCchhhHHHHHHHhhccC-----------------------CCC-----------------------
Q 020732 166 LGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG-----------------------GAS----------------------- 199 (322)
Q Consensus 166 L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~-----------------------~~~----------------------- 199 (322)
|...--.++.|.|||||+|||+++++..... +..
T Consensus 203 L~~~y~~~R~vrgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~~~ 282 (399)
T 4ddg_A 203 LHKKYSYIRKTRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTS 282 (399)
T ss_dssp HHHHCSEEECBCCSSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhhcCeeeeecCCCchHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHccCC
Confidence 3334557899999999999999987765311 000
Q ss_pred --------------cchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCCccCchHHHHH
Q 020732 200 --------------PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRA 264 (322)
Q Consensus 200 --------------~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~A 264 (322)
..-+..||..++.||+.|+|+|.||+.+. .++++||. .|..+++|||+++|.|
T Consensus 283 ~~~L~~~fnd~~~s~~iv~~lRllts~~i~~~~d~f~pFi~~~------------~~v~~yc~~~ve~~~~e~d~l~I~A 350 (399)
T 4ddg_A 283 VADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIA 350 (399)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSSS------------CCHHHHHHHHTSSTTCCBCHHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHhceeHHhhCcHHHHHH
Confidence 12357799999999999999999999652 36999999 8999999999999999
Q ss_pred HHHhhcCcEEEEECCCCc-eEeC-CCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732 265 LTHCLRKHIMIYSGSFPD-VEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 265 LA~~l~~~I~V~~~~~~~-~~~g-~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p 321 (322)
||++|+++|.|+..++.. ..+. ..|. .+..+.|+|.|.. .|||.|+|
T Consensus 351 La~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP------gHYDiLY~ 399 (399)
T 4ddg_A 351 LAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP------GHYDILYK 399 (399)
T ss_dssp HHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET------BEEEEEEC
T ss_pred HHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC------CccccCCC
Confidence 999999999999876521 1111 1121 1246889999986 59999987
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.71 E-value=3e-08 Score=94.74 Aligned_cols=138 Identities=19% Similarity=0.293 Sum_probs=85.8
Q ss_pred CCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcc-ccc-----------cccccccccchhhh
Q 020732 169 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS-DFL-----------PFYLSENMIGEESA 236 (322)
Q Consensus 169 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d-~F~-----------pfl~~~~~~~~~~~ 236 (322)
..|......||||||.+|++..++|. .+....||+...+.|+.... .|. .|... +-.++.
T Consensus 110 ~rL~pL~t~GDGnCLLHAvSqamWGv-----~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~---gL~y~e 181 (390)
T 3dkb_A 110 RKLVALKTNGDGNCLMHATSQYMWGV-----QDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVET---GLCYDT 181 (390)
T ss_dssp CCEEEBCCCCSSCHHHHHHHHHHHSS-----CSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC-------CCS
T ss_pred cceEEEEecCCCchHHHHHhHHhcCC-----CCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhh---cccccH
Confidence 35777889999999999999999994 56678899999999987643 231 11100 000000
Q ss_pred hhhhhhHHHHHHHhccCCc--------c--CchHHHHHHHHhhcCcEEEEECC-------CC---ceEeCCCCCC---CC
Q 020732 237 QSQVERFENYCKEVESTAA--------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GG 293 (322)
Q Consensus 237 ~~~~~~~~~Y~~~m~~~~~--------W--GG~lEL~ALA~~l~~~I~V~~~~-------~~---~~~~g~e~~~---~~ 293 (322)
..-..+|+.-+. |..+.. + =-++-+.+||++|++||+||... |. ++.||.-|.+ +.
T Consensus 182 ~ew~~EW~~Iv~-~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp 260 (390)
T 3dkb_A 182 RNWNDEWDNLIK-MASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPA 260 (390)
T ss_dssp SCSSHHHHHHHH-HTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCT
T ss_pred HHHHHHHHHHHH-HhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCH
Confidence 000234544443 333321 1 13678999999999999999632 11 1223322321 12
Q ss_pred CCCCCCeEEEEeccCCCCCCCccccccc
Q 020732 294 SDSSGSSIILSYHRHAFGLGEHYNSVIP 321 (322)
Q Consensus 294 ~~~~~~~I~L~Y~~~~y~LGeHYnSv~p 321 (322)
......||.|+|.+ .||-+|++
T Consensus 261 ~~C~rsPI~LgY~s------~HFsaLV~ 282 (390)
T 3dkb_A 261 QECYRYPIVLGYDS------HHFVPLVT 282 (390)
T ss_dssp TSSCSSCEEEEECS------SCEEEEEE
T ss_pred HHccCCceEEEecc------Cceeeeee
Confidence 23456899999997 69999986
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.61 E-value=7.5e-08 Score=93.45 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=88.1
Q ss_pred CCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc------cccccchhhhhhhhhhH
Q 020732 170 GLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL------SENMIGEESAQSQVERF 243 (322)
Q Consensus 170 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~------~~~~~~~~~~~~~~~~~ 243 (322)
.|..-...||||||-+|++..|+|. .+....||+...+.|......|..-.- +...+-.+ ..+...|
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV-----~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y--~lde~ew 260 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGI-----YDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHF--SLREEQW 260 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSS-----CCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCC--CCCHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcc-----cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcc--cccHHHH
Confidence 3667789999999999999999994 567789999999999875444432110 00000000 0012334
Q ss_pred HHHHH----HhccCCccCchHHHHHHHHhhcCcEEEEECCC---------CceEeCCCCCC---CCCCCCCCeEEEEecc
Q 020732 244 ENYCK----EVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHR 307 (322)
Q Consensus 244 ~~Y~~----~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~---------~~~~~g~e~~~---~~~~~~~~~I~L~Y~~ 307 (322)
.+..+ ....++.==-++-+.+||++|++||+||.... .++.||.-|.+ +.......||.|+|.+
T Consensus 261 q~EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~ 340 (454)
T 3zrh_A 261 QEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR 340 (454)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc
Confidence 44444 33445443456779999999999999998642 12223322221 1123446899999997
Q ss_pred CCCCCCCccccccc
Q 020732 308 HAFGLGEHYNSVIP 321 (322)
Q Consensus 308 ~~y~LGeHYnSv~p 321 (322)
.||-+|++
T Consensus 341 ------gHFsaLV~ 348 (454)
T 3zrh_A 341 ------GHFSALVA 348 (454)
T ss_dssp ------TEEEEEEE
T ss_pred ------cceeeeee
Confidence 59999886
No 11
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.86 E-value=40 Score=28.80 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=39.2
Q ss_pred ccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020732 23 KQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (322)
Q Consensus 23 ~~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~------~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~ 83 (322)
....+.+|.+.++.+.++|..++..++... ++.|. .+=+.+.+|+..|..+|...+.
T Consensus 72 Qq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De----akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT----AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788889988888776655544433 34554 5667888999999988876554
No 12
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.31 E-value=56 Score=21.62 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 020732 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (322)
Q Consensus 31 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el 78 (322)
.+|-+|.--.|...-|.|.|.+. .+.++|++||.|+
T Consensus 12 iarlkkdnlqlerdeqnlekiia------------nlrdeiarlenev 47 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIA------------NLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHH------------HHHHHHHHHHHHH
Confidence 45666665566666667776666 6778888888875
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.36 E-value=46 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=32.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH
Q 020732 27 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (322)
Q Consensus 27 ~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~ 79 (322)
...+...+..++++|+.+|..++.... .+..++..|+.++.
T Consensus 62 ~~~~i~~~~~~l~~l~~~i~~l~~~i~------------~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 62 REELLSKYHLDLNNSKNTLAKLIDRKS------------ELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 457888999999999999999886554 67777777777776
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.44 E-value=1.1e+02 Score=24.37 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=37.2
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHH
Q 020732 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (322)
Q Consensus 25 ~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh 82 (322)
..++.++-.=+.|+-.|++.+..++--+- .-=-++...|..||.+|....
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888888888875554 334578888888888888764
No 15
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=39.18 E-value=26 Score=20.30 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 020732 35 RKEISQLQNKETELKK 50 (322)
Q Consensus 35 rkE~k~Lq~~i~~~kk 50 (322)
-||+.|||.++..++|
T Consensus 7 ykeledlqerlrklrk 22 (27)
T 3twe_A 7 YKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788999998877765
No 16
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.44 E-value=66 Score=25.81 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020732 35 RKEISQLQNKETELK 49 (322)
Q Consensus 35 rkE~k~Lq~~i~~~k 49 (322)
.+..++|++.|+.|+
T Consensus 70 q~~vqeLqgEI~~Ln 84 (121)
T 3mq7_A 70 QKKVEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 17
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=35.68 E-value=1.1e+02 Score=27.55 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020732 61 KAKKKQVEEEISRLSAKLREKHAKELASLG 90 (322)
Q Consensus 61 Kk~kK~v~~e~~~le~el~~rh~~El~~l~ 90 (322)
+.++.-+...|..|..=+.+.|..+|..|.
T Consensus 100 ~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk 129 (251)
T 1jad_A 100 RRKEQHATEQTAKITELAREKQIAELKALK 129 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777777777664
No 18
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=35.52 E-value=64 Score=25.31 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=30.5
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHH
Q 020732 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (322)
Q Consensus 25 ~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~r 81 (322)
+.+++.++.=++|.++....+..+|+... .+..+++.|...|++|
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~------------~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHS------------ILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 44566667777777777666666776555 5667777777777665
No 19
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=34.22 E-value=33 Score=28.46 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCC--ccCchHHHHHHHHhh
Q 020732 201 YNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA--AWGGELELRALTHCL 269 (322)
Q Consensus 201 ~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~--~WGG~lEL~ALA~~l 269 (322)
.....||..+..+.+.|+..|.+++..-.... .......|..-.+.|-.+| .||--+-|.|++-.+
T Consensus 37 ~~~~~Lr~~~~ele~~~~~~f~~~~~~l~i~~---~~~a~~~f~~Va~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 37 QACRVLQRVAFSVQKEVEKNLKSYLDDFHVES---IDTARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTCCCCS---HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---cchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888774322101 0112345777778888888 899999999888776
No 20
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=34.18 E-value=2.1e+02 Score=25.86 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 020732 27 RDEMLSRHRKEISQLQNKET 46 (322)
Q Consensus 27 ~e~l~~rHrkE~k~Lq~~i~ 46 (322)
+-.|..+|-+|.|||+.+..
T Consensus 125 mK~Lk~~~ErE~KELkk~q~ 144 (251)
T 1jad_A 125 LKALKESSESNIKDIKKKLE 144 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34577789999999876543
No 21
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.71 E-value=46 Score=25.17 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 020732 68 EEEISRLSAKLREKHAKELASLG 90 (322)
Q Consensus 68 ~~e~~~le~el~~rh~~El~~l~ 90 (322)
.++|.+||.++ +||+.-|..|.
T Consensus 57 ~~ei~~le~~i-~rhk~~i~~l~ 78 (84)
T 1gmj_A 57 AKEIERLQKEI-ERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhh
Confidence 44667777777 56777777664
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.21 E-value=97 Score=21.69 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH
Q 020732 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (322)
Q Consensus 33 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~ 79 (322)
+.+.+..+|+.++..|+. ...++..+|+.|+.|+.
T Consensus 20 KKk~~~~~le~~~~~L~~------------~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEK------------KNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 445566677777777763 33478888888887754
No 23
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=32.87 E-value=12 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 020732 38 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (322)
Q Consensus 38 ~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el 78 (322)
+..|+.||++|...+- .+.+++..++.+|
T Consensus 6 i~avKkKiq~lq~q~d------------~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNY------------HLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTT------------TTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh
Confidence 4567778888876544 4556666666554
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.10 E-value=1.9e+02 Score=22.28 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH
Q 020732 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (322)
Q Consensus 33 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~ 79 (322)
+=..++++....++.|+..+. +.+..|..+..+..+++.||+
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~-----eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIA-----KENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444 123555666666666666554
No 25
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.49 E-value=1.7e+02 Score=22.04 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=14.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhc
Q 020732 31 LSRHRKEISQLQNKETELKKAAA 53 (322)
Q Consensus 31 ~~rHrkE~k~Lq~~i~~~kk~~~ 53 (322)
+..|++|+++||..|...|+.+.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665544
No 26
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.06 E-value=1e+02 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHH
Q 020732 36 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 77 (322)
Q Consensus 36 kE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~e 77 (322)
-|++++-.||..|+ ..|+-|-+.+|.+|.+
T Consensus 21 sEI~EID~Ki~nL~------------~mR~ivldRlA~lEqd 50 (72)
T 2xu6_A 21 SEIRDIEVEVENLR------------QKKEKLLGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhh
Confidence 58899999999986 5678899999988864
No 27
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=26.26 E-value=50 Score=27.53 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCC--ccCchHHHHHHHHhhcC
Q 020732 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA--AWGGELELRALTHCLRK 271 (322)
Q Consensus 202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~--~WGG~lEL~ALA~~l~~ 271 (322)
.+..||..+.+..+.|+..|..++..-.... ......|..-++.|-.+| .||-=+-|.|++-.+=+
T Consensus 39 ~~~~Lr~vgdele~~~~~~f~~m~~~L~it~----~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la~ 106 (157)
T 4hw4_A 39 ALETLRRVGDGVQRNHETAFQGMLRKLDIKN----EDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK 106 (157)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCS----HHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 4688999999999999999987664211100 112345777777777777 79999999988776643
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.13 E-value=1.4e+02 Score=24.24 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 020732 62 AKKKQVEEEISRLSAKLRE 80 (322)
Q Consensus 62 k~kK~v~~e~~~le~el~~ 80 (322)
++-..+..++.+||.+|+.
T Consensus 117 ~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 117 SEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3345555666666666553
No 29
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.51 E-value=53 Score=24.89 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 020732 38 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (322)
Q Consensus 38 ~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el 78 (322)
+..|+++|..|+- .+.++..+|+.++++|
T Consensus 3 ~~~L~~~i~~L~~------------q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQ------------QKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHh
Confidence 4567777777753 3447777777777644
No 30
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=25.37 E-value=47 Score=27.43 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCC--ccCchHHHHHHHHhhc
Q 020732 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA--AWGGELELRALTHCLR 270 (322)
Q Consensus 202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~--~WGG~lEL~ALA~~l~ 270 (322)
.+..||..+-+..+.|+..|..++..-+... ......|..-.+.|-.+| .||-=+-|.|++-.+-
T Consensus 39 ~~~~Lr~i~dele~~~~~~f~~~~~~l~i~~----~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~la 105 (157)
T 2nl9_A 39 ALETLRRVGDGVQRNHETAFQGMLRKLDIKN----EDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 105 (157)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHCCCS----TTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 4678999999999999998887664211000 011245778888888888 5999999999987663
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.27 E-value=1.4e+02 Score=22.30 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 020732 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (322)
Q Consensus 33 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~ 84 (322)
|.-.|++.+...+..+|....|.. +.|+++...+.+|..+-.+=+.+
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e-----~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTE-----RIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777778888877776332 67889999999988887766655
No 32
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.13 E-value=1.1e+02 Score=21.51 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 020732 66 QVEEEISRLSAKLR 79 (322)
Q Consensus 66 ~v~~e~~~le~el~ 79 (322)
.+..+++.|..+|.
T Consensus 48 ~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 48 HLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555544443
No 33
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=23.03 E-value=17 Score=22.57 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=14.0
Q ss_pred ccCCCeeeeeCCCCchhh
Q 020732 167 GPLGLTVNDIKPDGHCLY 184 (322)
Q Consensus 167 ~~~gL~i~~I~~DGnCLF 184 (322)
--+||....=.|||.|.|
T Consensus 19 pglgltcipgnpdgtcyy 36 (37)
T 3q8j_A 19 PGLGLTCIPGNPDGTCYY 36 (37)
T ss_dssp TTSCEEEEECSSEEEEEE
T ss_pred CCCCcEecCCCCCceEEe
Confidence 456777777788999976
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.94 E-value=2.4e+02 Score=20.60 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=13.1
Q ss_pred CCCcccccccHH---HHHHhHHHHHHHHHHHHHHHHhhhc
Q 020732 17 GDASQKKQETRD---EMLSRHRKEISQLQNKETELKKAAA 53 (322)
Q Consensus 17 ~~~~~~~~~~~e---~l~~rHrkE~k~Lq~~i~~~kk~~~ 53 (322)
|-+|-++.-|.. +++.+=..|++..+..|..+.+...
T Consensus 11 ~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 11 GMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 3344444444555555555444333
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.78 E-value=2.9e+02 Score=21.60 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHhHHHH---HHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHhcC
Q 020732 28 DEMLSRHRKE---ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL---REKHAKELASLGY 91 (322)
Q Consensus 28 e~l~~rHrkE---~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el---~~rh~~El~~l~~ 91 (322)
+++..+.-.| +..+.+.|.++||-+--. --.|-++..+|..|..|| +.-|.+||..|..
T Consensus 51 edfk~KyE~E~~~r~~~E~di~~lrK~lD~~-----~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 51 MRLREKLQEEMLQREEAENTLQSFRQDVDNA-----SLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhcccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 345677888888866310 145678888888888875 5779999999864
No 36
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=21.73 E-value=1.2e+02 Score=25.83 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCC-ccCchHHHHHHHHhh
Q 020732 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA-AWGGELELRALTHCL 269 (322)
Q Consensus 202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~-~WGG~lEL~ALA~~l 269 (322)
-+..||..+-+..+.|+..|..++..-.... ......|..-.+.|-.+| .||--+-|.|++-.+
T Consensus 47 v~~~Lr~~gdele~~~~~~f~~~~~~l~i~~----~~~~~~F~~Va~elF~dGinWGRIValfaF~g~L 111 (188)
T 1o0l_A 47 LHQAMRAAGDEFETRFRRTFSDLAAQLHVTP----GSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAAL 111 (188)
T ss_dssp THHHHHHHHHHHHHHCSCSHHHHHHHTTTCS----STTHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC----ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3688999888888889999987764111000 012456777777776444 799988998887766
No 37
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=21.55 E-value=94 Score=26.41 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCC---ccCchHHHHHHHHhhcCc
Q 020732 201 YNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA---AWGGELELRALTHCLRKH 272 (322)
Q Consensus 201 ~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~---~WGG~lEL~ALA~~l~~~ 272 (322)
..+..||..+.+..+.|+..|..+..-.. . ....|..-.+.|-.+| .||-=+-|.|++-.+=+.
T Consensus 36 ~~aa~LR~va~ele~~~~~~f~~~~~~~~--~------a~~~f~~Va~~lF~dg~~inWGRIV~l~~F~g~la~~ 102 (175)
T 4b4s_A 36 PEAAVLRSAAARLRQIHRSFFSAYLGYPG--N------RFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLER 102 (175)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHTTTTCCS--C------HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--h------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999988775321 1 1356777777876665 799999999998877443
No 38
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=21.42 E-value=65 Score=31.92 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=43.7
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhcccCC----chhHHHHHHHHhcc-CCCeeeeeCCCCchhhHHHHHHHh
Q 020732 120 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSD----RTVEDEKLEKKLGP-LGLTVNDIKPDGHCLYRAVEDQLA 192 (322)
Q Consensus 120 ~~~~sKa~~Rr~~r~~~~~~r~~~i~~e~~~~~~~----r~~E~~~l~~~L~~-~gL~i~~I~~DGnCLFrAIa~QL~ 192 (322)
.++.||=.++..+|.++-.++++++.+..+..... -..+.+.+...|.. +.+...-+-=|-+|||.||.....
T Consensus 32 ~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r~~~r~I~hiDmDaFYAsvE~~~~ 109 (517)
T 3pzp_A 32 ATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDN 109 (517)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESSHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhccCcCcEEEEEecCcHHHHHHHHhC
Confidence 34567767777777777777777777655544322 12233334444432 444444455599999999986544
No 39
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=20.98 E-value=1.1e+02 Score=24.68 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCC-ccCchHHHHHHHHhh
Q 020732 201 YNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA-AWGGELELRALTHCL 269 (322)
Q Consensus 201 ~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~-~WGG~lEL~ALA~~l 269 (322)
..+..||..+-+..+.|+..|..++..-.... ......|..-.+.|-.+| .||--+-|.|++-.+
T Consensus 30 ~~~~~Lr~~gdele~~~~~~f~~~~~~l~i~~----~~~~~~f~~Va~elF~dGinWGRIValf~F~g~l 95 (144)
T 2w3l_A 30 VVHKTLREAGDDFSRRYRRDFAEMSSGLHLTP----FTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 95 (144)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCT----TTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCC----ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34677888888888888888866553321000 112456666666655444 799999999888876
Done!