Query 020733
Match_columns 322
No_of_seqs 297 out of 1450
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.7E-28 1.9E-32 203.3 13.8 112 128-252 8-119 (130)
2 1gcc_A Ethylene responsive ele 99.8 3.8E-21 1.3E-25 142.3 5.9 58 44-101 2-62 (63)
3 4i1k_A B3 domain-containing tr 99.8 1.2E-18 4E-23 149.2 10.7 92 127-235 42-133 (146)
4 1yel_A AT1G16640; CESG, protei 99.6 3.2E-15 1.1E-19 120.4 9.4 87 129-233 6-92 (104)
5 3igm_B PF14_0633 protein; AP2 90.3 0.22 7.5E-06 37.3 3.4 28 40-67 3-31 (77)
6 1na6_A Ecorii, restriction end 88.2 0.23 8E-06 48.2 2.8 101 123-230 10-123 (404)
7 1u3e_M HNH homing endonuclease 77.5 0.42 1.4E-05 40.8 -0.3 37 46-83 110-146 (174)
8 1z1b_A Integrase; protein-DNA 63.5 6.2 0.00021 35.7 4.3 41 47-89 15-55 (356)
9 3jtz_A Integrase; four strande 48.4 58 0.002 24.4 6.8 42 49-90 29-76 (88)
10 3m7a_A Uncharacterized protein 40.7 46 0.0016 27.4 5.5 48 177-227 82-140 (140)
11 1oa8_A Ataxin-1; RNA binding, 38.7 19 0.00065 29.7 2.8 31 199-229 86-126 (133)
12 3ju0_A Phage integrase; four s 34.5 96 0.0033 24.1 6.3 42 49-90 29-76 (108)
13 2k75_A Uncharacterized protein 30.7 73 0.0025 24.5 5.0 31 179-229 40-70 (106)
14 2ftc_I Mitochondrial ribosomal 27.4 80 0.0027 25.1 4.7 37 55-91 79-115 (118)
15 3pjy_A Hypothetical signal pep 24.1 2.3E+02 0.008 22.8 7.1 48 177-227 68-126 (136)
16 2z0t_A Putative uncharacterize 22.5 78 0.0027 24.9 3.7 27 216-250 31-57 (109)
17 3eop_A Thymocyte nuclear prote 21.9 1.3E+02 0.0043 25.9 5.1 23 211-235 46-68 (176)
18 2p5d_A UPF0310 protein mjecl36 21.4 57 0.002 26.8 2.9 20 207-228 28-47 (147)
19 3o27_A Putative uncharacterize 21.2 1.2E+02 0.0042 21.9 4.2 32 202-234 23-54 (68)
20 1x60_A Sporulation-specific N- 21.0 64 0.0022 22.9 2.8 23 65-87 46-68 (79)
21 1x9u_A Umecyanin; cupredoxin, 20.3 34 0.0012 27.2 1.2 23 212-234 23-45 (116)
22 2ar1_A Hypothetical protein; s 20.3 1.1E+02 0.0037 26.2 4.4 22 212-235 54-75 (172)
23 2l66_A SSO7C4, transcriptional 20.1 95 0.0032 20.7 3.3 21 212-232 19-39 (53)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=5.7e-28 Score=203.27 Aligned_cols=112 Identities=50% Similarity=0.779 Sum_probs=100.0
Q ss_pred CccccccccccCccccccccccccchhhHhhcCCCCchhhhhhcccCCCCCeEEEEEeCCCceEEEEEEEeCCCCceEEc
Q 020733 128 YSSRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFT 207 (322)
Q Consensus 128 ~s~~~~F~K~LT~SDV~~~~rL~IPk~~a~~~lP~l~~~~~~~~~~~~~~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt 207 (322)
.+..++|.|+||+|||+.+++|+||+++|++|||.++. .....++.|.+.|.+|+.|+|+|+||+++++|+|+
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~-------~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt 80 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSS-------NVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLT 80 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSS-------CCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEE
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCcccc-------ccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEc
Confidence 45678999999999999899999999999999999873 12357899999999999999999999988999999
Q ss_pred cChHHHHhhcCCCCCCEEEEEEeeccCceecceeEEEEeeeeCCC
Q 020733 208 RGWNRFVKENQLKANDTICFYLCELRDIAKGTKTFGMIDAKKGEN 252 (322)
Q Consensus 208 ~GW~~FV~~k~L~~GD~i~F~~~~~~~~~~~~~~~~~i~~~~~~~ 252 (322)
+||..||++|+|++||+|+|+++++++. +++|++++...
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~------~l~I~~rr~~~ 119 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQ------QLYIGWKSRSG 119 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSC------CEEEEEECCCS
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCc------EEEEEEEECCC
Confidence 9999999999999999999999886543 58899998763
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.83 E-value=3.8e-21 Score=142.31 Aligned_cols=58 Identities=45% Similarity=0.829 Sum_probs=55.1
Q ss_pred ceEEEEECCCCeEEEEEee---CCeeEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 020733 44 KFKGVVPQQNGHWGAQIYA---NHQRIWLGTFKSEKDAAMAYDSAAIRLRGVDSHRNFPWT 101 (322)
Q Consensus 44 ~yrGV~~~~~gkw~A~I~~---~~k~~~LG~f~t~eeAa~Ayd~aa~~~~g~~a~~NFp~~ 101 (322)
+|+||+++++|||+|+|+. +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999889999999998 579999999999999999999999999999999999964
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.77 E-value=1.2e-18 Score=149.21 Aligned_cols=92 Identities=28% Similarity=0.432 Sum_probs=80.6
Q ss_pred CCccccccccccCccccccccccccchhhHhhcCCCCchhhhhhcccCCCCCeEEEEEeCCCceEEEEEEEeCCCCceEE
Q 020733 127 SYSSRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVF 206 (322)
Q Consensus 127 s~s~~~~F~K~LT~SDV~~~~rL~IPk~~a~~~lP~l~~~~~~~~~~~~~~~~~l~~~D~~gk~W~fr~~~~~~~~~yvL 206 (322)
-.+..|.|.|+||+|||...+.|.||+.+++.|||..+ . .+.+.|. |+.|.++|+++++ ++.|
T Consensus 42 ~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~------------~--~i~L~~~-gk~W~v~~~~~~~--~~~l 104 (146)
T 4i1k_A 42 FEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS------------G--FIKVQLA-EKQWPVRCLYKAG--RAKF 104 (146)
T ss_dssp CCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC------------S--EEEEEET-TEEEEEEEEEETT--EEEE
T ss_pred cCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC------------e--EEEEEEC-CcEEEEEEEEeCC--cEEE
Confidence 46788999999999999887899999999999999754 2 4555676 5999999999875 6899
Q ss_pred ccChHHHHhhcCCCCCCEEEEEEeeccCc
Q 020733 207 TRGWNRFVKENQLKANDTICFYLCELRDI 235 (322)
Q Consensus 207 t~GW~~FV~~k~L~~GD~i~F~~~~~~~~ 235 (322)
++||..||++|+|++||+|+|....+.+.
T Consensus 105 s~GW~~Fv~dn~L~~GD~cvFeli~~~~~ 133 (146)
T 4i1k_A 105 SQGWYEFTLENNLGEGDVCVFELLRTRDF 133 (146)
T ss_dssp CTTHHHHHHHTTCCTTCEEEEEECSSSSC
T ss_pred CCchHHHHHHcCCCCCCEEEEEEecCCce
Confidence 99999999999999999999999887654
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.59 E-value=3.2e-15 Score=120.40 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=72.7
Q ss_pred ccccccccccCccccccccccccchhhHhhcCCCCchhhhhhcccCCCCCeEEEEEeCCCceEEEEEEEeCCCCceEEcc
Q 020733 129 SSRQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFTR 208 (322)
Q Consensus 129 s~~~~F~K~LT~SDV~~~~rL~IPk~~a~~~lP~l~~~~~~~~~~~~~~~~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~ 208 (322)
+..|.|.|+|+++|. ..+|.||+.+++.|.|.+. -.+.+.|..|+.|+++|+++. .+++|++
T Consensus 6 ~~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~--------------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~ 67 (104)
T 1yel_A 6 TGEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP--------------ITVDLLDYSGRSWTVRMKKRG--EKVFLTV 67 (104)
T ss_dssp CCCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC--------------SEEEEEETTSCEEEEEEEEET--TEEEECT
T ss_pred CCCCCEEEEECCCCc--cceEECCHHHHHhcCccCC--------------CEEEEECCCCCEEEEEEEEEC--CcEEEcc
Confidence 356789999999994 4599999999988665433 256678999999999999764 4788999
Q ss_pred ChHHHHhhcCCCCCCEEEEEEeecc
Q 020733 209 GWNRFVKENQLKANDTICFYLCELR 233 (322)
Q Consensus 209 GW~~FV~~k~L~~GD~i~F~~~~~~ 233 (322)
||.+||++|+|++||.|+|....+.
T Consensus 68 GW~~Fv~~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 68 GWENFVKDNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp THHHHHHHHTCCTTCEEEEEECSSS
T ss_pred ChHHHHHHcCCCCCCEEEEEEcCCC
Confidence 9999999999999999999986543
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.31 E-value=0.22 Score=37.33 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCCceEEEEE-CCCCeEEEEEeeCCeeE
Q 020733 40 SAVSKFKGVVP-QQNGHWGAQIYANHQRI 67 (322)
Q Consensus 40 ~~~S~yrGV~~-~~~gkw~A~I~~~~k~~ 67 (322)
..+|||.||++ .+.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 35699999977 66799999999888764
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=88.23 E-value=0.23 Score=48.19 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=68.6
Q ss_pred hhcCCCccccccccccCcccc----ccccccccchhhHhhcCCCCchhhhhhcccCCCCCeEEEE--EeCCCceEEEEEE
Q 020733 123 IRDGSYSSRQLFQKELTPSDV----GKLNRLVIPKKYAVKYFPQISERVEEHAENDKADDVQLVF--HDKSMKLWKFRYC 196 (322)
Q Consensus 123 LR~gs~s~~~~F~K~LT~SDV----~~~~rL~IPk~~a~~~lP~l~~~~~~~~~~~~~~~~~l~~--~D~~gk~W~fr~~ 196 (322)
+-.........|.|.|++-|+ +++.++.+|+..+..+||.+.-.. ...+...+.+ -|+..-.+.++++
T Consensus 10 ~~~~~~~~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~------e~~~~~~~~~~l~d~d~p~td~~~t 83 (404)
T 1na6_A 10 LLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTR------ELNPSVFLTAHVSSHDCPDSEARAI 83 (404)
T ss_dssp HHHHHHSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCS------SSSCEEEEEEEESSSCCCCEEEEEE
T ss_pred HHHhccccchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCcc------ccCCcceeEEEeccCCCceEEEEEE
Confidence 333445567789999999998 456799999988999998877211 1123333333 3443455599988
Q ss_pred EeC------CCCceEEccChHH-HHhhcCCCCCCEEEEEEe
Q 020733 197 YWK------SSQSFVFTRGWNR-FVKENQLKANDTICFYLC 230 (322)
Q Consensus 197 ~~~------~~~~yvLt~GW~~-FV~~k~L~~GD~i~F~~~ 230 (322)
|.. .+.-|-|+ .|.. +.--+...+||.++|-..
T Consensus 84 wYn~R~~~~tRnEyRLt-~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 84 YYNSAHFGKTRNEKRIT-RWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EECGGGTTSCCCEEEEE-CCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EecccccCCCCCceEEe-ecCCCCcccccCCCCCEEEEEEe
Confidence 876 23457786 3655 666688899999999876
No 7
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=77.53 E-value=0.42 Score=40.78 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=28.6
Q ss_pred EEEEECCCCeEEEEEeeCCeeEEecCCCCHHHHHHHHH
Q 020733 46 KGVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYD 83 (322)
Q Consensus 46 rGV~~~~~gkw~A~I~~~~k~~~LG~f~t~eeAa~Ayd 83 (322)
+||...+.++|.|.|..+ +.++||.|.|.+|||+||.
T Consensus 110 ~g~~~~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 110 KAQQIAKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 455333345688999888 7788999999999999963
No 8
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=63.46 E-value=6.2 Score=35.72 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=31.8
Q ss_pred EEEECCCCeEEEEEeeCCeeEEecCCCCHHHHHHHHHHHHHHh
Q 020733 47 GVVPQQNGHWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIRL 89 (322)
Q Consensus 47 GV~~~~~gkw~A~I~~~~k~~~LG~f~t~eeAa~Ayd~aa~~~ 89 (322)
||+.+++|.|+.+...+|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777788999988777899999996 8888877666555444
No 9
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=48.36 E-value=58 Score=24.40 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=29.4
Q ss_pred EECCCC--eEEEEEeeCCee--EEecCCC--CHHHHHHHHHHHHHHhc
Q 020733 49 VPQQNG--HWGAQIYANHQR--IWLGTFK--SEKDAAMAYDSAAIRLR 90 (322)
Q Consensus 49 ~~~~~g--kw~A~I~~~~k~--~~LG~f~--t~eeAa~Ayd~aa~~~~ 90 (322)
+..++| .|.-+.+.+||+ +-||.|. |.++|....+.+...+.
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 345655 588888887764 6699997 68888777666655543
No 10
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=40.70 E-value=46 Score=27.40 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCceEEEEEEEeC---------CCCceEE--ccChHHHHhhcCCCCCCEEEE
Q 020733 177 DDVQLVFHDKSMKLWKFRYCYWK---------SSQSFVF--TRGWNRFVKENQLKANDTICF 227 (322)
Q Consensus 177 ~~~~l~~~D~~gk~W~fr~~~~~---------~~~~yvL--t~GW~~FV~~k~L~~GD~i~F 227 (322)
-.+++.+.|..|++-.....-.. .+-+||| ..|| +.+.++++||.|.|
T Consensus 82 ~PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 82 IPLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp SCEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred cceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 45778888888877666432111 1246888 5555 57889999999874
No 11
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=38.74 E-value=19 Score=29.66 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCCceEEccChHHH----------HhhcCCCCCCEEEEEE
Q 020733 199 KSSQSFVFTRGWNRF----------VKENQLKANDTICFYL 229 (322)
Q Consensus 199 ~~~~~yvLt~GW~~F----------V~~k~L~~GD~i~F~~ 229 (322)
-..+-||...||+-| ..-+.|++||+|+-.-
T Consensus 86 ~ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClslt 126 (133)
T 1oa8_A 86 VEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLT 126 (133)
T ss_dssp TTCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEEE
T ss_pred CCCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEecc
Confidence 456788999999644 3457899999998754
No 12
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=34.52 E-value=96 Score=24.11 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=29.2
Q ss_pred EECCCC--eEEEEEeeCCee--EEecCCC--CHHHHHHHHHHHHHHhc
Q 020733 49 VPQQNG--HWGAQIYANHQR--IWLGTFK--SEKDAAMAYDSAAIRLR 90 (322)
Q Consensus 49 ~~~~~g--kw~A~I~~~~k~--~~LG~f~--t~eeAa~Ayd~aa~~~~ 90 (322)
+..++| .|.-+.+.+|++ +-||.|. |..+|....+.+...+.
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~ 76 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLA 76 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345665 488888887764 5689996 68888776666655553
No 13
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=30.68 E-value=73 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.2
Q ss_pred eEEEEEeCCCceEEEEEEEeCCCCceEEccChHHHHhhcCCCCCCEEEEEE
Q 020733 179 VQLVFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTICFYL 229 (322)
Q Consensus 179 ~~l~~~D~~gk~W~fr~~~~~~~~~yvLt~GW~~FV~~k~L~~GD~i~F~~ 229 (322)
..+.+.|.+| ..++..|... |++||+|.+..
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~n 70 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDN 70 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEe
Confidence 3577788888 5777788664 99999999874
No 14
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=27.38 E-value=80 Score=25.15 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=29.7
Q ss_pred eEEEEEeeCCeeEEecCCCCHHHHHHHHHHHHHHhcC
Q 020733 55 HWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIRLRG 91 (322)
Q Consensus 55 kw~A~I~~~~k~~~LG~f~t~eeAa~Ayd~aa~~~~g 91 (322)
.|.|.|..+..-+-++...+++.|..|+..|+.+|=.
T Consensus 79 ~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 5999998766666677768899999999999887743
No 15
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=24.15 E-value=2.3e+02 Score=22.83 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=32.3
Q ss_pred CCeEEEEEeCCCceEEEEEEEe---------CCCCceEE--ccChHHHHhhcCCCCCCEEEE
Q 020733 177 DDVQLVFHDKSMKLWKFRYCYW---------KSSQSFVF--TRGWNRFVKENQLKANDTICF 227 (322)
Q Consensus 177 ~~~~l~~~D~~gk~W~fr~~~~---------~~~~~yvL--t~GW~~FV~~k~L~~GD~i~F 227 (322)
-.+++.+.|..|++-.....-. ..+-+||| ..|| +.+.++++||.|.+
T Consensus 68 ~PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 68 LPLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGT---VKRLGVSPGDRLEG 126 (136)
T ss_dssp SCEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTH---HHHHTCCTTCEEEE
T ss_pred cceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcCh---HHhcCCCCCCEEEE
Confidence 4577888888887766632221 11245887 5555 47899999999975
No 16
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=22.47 E-value=78 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=17.5
Q ss_pred hcCCCCCCEEEEEEeeccCceecceeEEEEeeeeC
Q 020733 216 ENQLKANDTICFYLCELRDIAKGTKTFGMIDAKKG 250 (322)
Q Consensus 216 ~k~L~~GD~i~F~~~~~~~~~~~~~~~~~i~~~~~ 250 (322)
..++++||.|+| ++.. ...-++++++=
T Consensus 31 ~~~ikvGD~I~f----~~~~----l~~~V~~v~~Y 57 (109)
T 2z0t_A 31 RRQIKPGDIIIF----EGGK----LKVKVKGIRVY 57 (109)
T ss_dssp GGGCCTTCEEEE----GGGT----EEEEEEEEEEE
T ss_pred hhcCCCCCEEEE----CCCE----EEEEEEEEEcc
Confidence 357899999999 4433 33455565543
No 17
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=21.86 E-value=1.3e+02 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=19.2
Q ss_pred HHHHhhcCCCCCCEEEEEEeeccCc
Q 020733 211 NRFVKENQLKANDTICFYLCELRDI 235 (322)
Q Consensus 211 ~~FV~~k~L~~GD~i~F~~~~~~~~ 235 (322)
..|.++ .++||.+.||...+...
T Consensus 46 RN~mR~--Mk~GD~~fFYHSnck~p 68 (176)
T 3eop_A 46 RNFLRA--MKLGEEAFFYHSNCKEP 68 (176)
T ss_dssp HHHHHH--CCTTCEEEEEECCSSSC
T ss_pred HHHHHh--cCCCCEEEEEecCCCCC
Confidence 358885 89999999999987665
No 18
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=21.37 E-value=57 Score=26.79 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=16.8
Q ss_pred ccChHHHHhhcCCCCCCEEEEE
Q 020733 207 TRGWNRFVKENQLKANDTICFY 228 (322)
Q Consensus 207 t~GW~~FV~~k~L~~GD~i~F~ 228 (322)
.-+...|.+ ..+.||.++||
T Consensus 28 n~~arn~lr--~Mk~GD~~~fY 47 (147)
T 2p5d_A 28 AERYKNTIN--KVKVGDKLIIY 47 (147)
T ss_dssp CGGGHHHHT--TCCTTCEEEEE
T ss_pred CHHHHHHHH--hCCCCCEEEEE
Confidence 345677887 89999999999
No 19
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.20 E-value=1.2e+02 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=23.3
Q ss_pred CceEEccChHHHHhhcCCCCCCEEEEEEeeccC
Q 020733 202 QSFVFTRGWNRFVKENQLKANDTICFYLCELRD 234 (322)
Q Consensus 202 ~~yvLt~GW~~FV~~k~L~~GD~i~F~~~~~~~ 234 (322)
..|.|+ ==.++++.-+|+.||.+.+.-+..++
T Consensus 23 etyYIn-IPaeI~kaLgIk~gD~fel~ve~kdg 54 (68)
T 3o27_A 23 TTFYLL-IPKDIAEALDIKPDDTFILNMEQKDG 54 (68)
T ss_dssp CCEEEE-ECHHHHHHTTCCTTCCEEEEEEEETT
T ss_pred eEEEEe-CcHHHHHHhCCCCCCEEEEEEecCCC
Confidence 344442 22479999999999999998865444
No 20
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.98 E-value=64 Score=22.87 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.3
Q ss_pred eeEEecCCCCHHHHHHHHHHHHH
Q 020733 65 QRIWLGTFKSEKDAAMAYDSAAI 87 (322)
Q Consensus 65 k~~~LG~f~t~eeAa~Ayd~aa~ 87 (322)
-++++|.|.+.++|..+.+....
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47889999999999988665543
No 21
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=20.33 E-value=34 Score=27.17 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=18.3
Q ss_pred HHHhhcCCCCCCEEEEEEeeccC
Q 020733 212 RFVKENQLKANDTICFYLCELRD 234 (322)
Q Consensus 212 ~FV~~k~L~~GD~i~F~~~~~~~ 234 (322)
..+..+..++||+|+|.-.....
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~H 45 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMH 45 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTC
T ss_pred hccccccCcCCCEEEEEecCCCC
Confidence 46889999999999997765433
No 22
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=20.29 E-value=1.1e+02 Score=26.19 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=18.3
Q ss_pred HHHhhcCCCCCCEEEEEEeeccCc
Q 020733 212 RFVKENQLKANDTICFYLCELRDI 235 (322)
Q Consensus 212 ~FV~~k~L~~GD~i~F~~~~~~~~ 235 (322)
.|.+ ..++||.|.||...+...
T Consensus 54 N~mr--~Mk~GD~vfFYHS~c~~p 75 (172)
T 2ar1_A 54 NNMR--AMSVGDKVLFYHSNTKEP 75 (172)
T ss_dssp HHHH--HCCTTCEEEEEECSSSSC
T ss_pred HHHH--hcCCCCEEEEEecCCCCC
Confidence 5777 689999999999986554
No 23
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.12 E-value=95 Score=20.72 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHhhcCCCCCCEEEEEEeec
Q 020733 212 RFVKENQLKANDTICFYLCEL 232 (322)
Q Consensus 212 ~FV~~k~L~~GD~i~F~~~~~ 232 (322)
.+.+.-+|+.||.+.|.-..+
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHcCcCCCCEEEEEEECC
Confidence 577888999999999987554
Done!