BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020734
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 34.7 bits (78), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 28 PGEQIQCRICLETDGRD---FIAPCKCKGTSKYVHRECLDHW 66
          P  Q  CRIC   +G D    I PC C G+  +VH+ CL  W
Sbjct: 12 PSSQDICRIC-HCEGDDESPLITPCHCTGSLHFVHQACLQQW 52


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 34.3 bits (77), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 34 CRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88
          C IC E  G +    C C G  + VHR CL  W  +    A   C  C   Y+ R
Sbjct: 9  CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTA---CQICGVVYNTR 60


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
          Protein 24
          Length = 74

 Score = 28.5 bits (62), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 34 CRICLET-DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84
          C +CLE    RD +  C CK      HR+CL  W  VR+      C  C  P
Sbjct: 18 CAVCLEDFKPRDELGICPCKHA---FHRKCLIKWLEVRK-----VCPLCNMP 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,495,206
Number of Sequences: 62578
Number of extensions: 362508
Number of successful extensions: 918
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)