BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020734
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 34 CRICL--ETDGRDFIAPCKCKGTSKYVHRECLDHWRA-----VREGFAFAHCTTCKAPYH 86
CRIC T+ PCKC+G+ KY+H CL W A + + A C C P
Sbjct: 39 CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPIQ 98
Query: 87 LRVHVAADRRWRTLKFRFFVTRDIISIFLAVQLVIA-SLAYLVYLV 131
+ + A+ + F +++ I++ F +L + LA ++Y++
Sbjct: 99 FKT-IYAENMPEKIPFSLLLSKSILTFFEKARLALTIGLAAVLYII 143
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 5 SDTSPLIPPSTITEP-SEIDLEAGPGEQIQCRIC-LETDGRD-FIAPCKCKGTSKYVHRE 61
S+ S P+T T P S+ L P Q CRIC E D I PC+C GT ++VH+
Sbjct: 50 SNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQS 109
Query: 62 CLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRFFVTRDII-SIFLAVQLV 120
CL W + C CK + + + R+W L+ R I S+ V V
Sbjct: 110 CLHQWIKSSDTRC---CELCKYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAV 166
Query: 121 IASLAYLVYLVDTYQQSWLR------LAWGFDSELSFYYI--CGALLFF 161
+ L L+D + + L W F ++L I G L+F
Sbjct: 167 TCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFM 215
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 5 SDTSPLIPPSTITEP-SEIDLEAGPGEQIQCRIC-LETDGRD-FIAPCKCKGTSKYVHRE 61
S+ S P+T T P S+ L P Q CRIC E D I PC+C GT ++VH+
Sbjct: 50 SNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQS 109
Query: 62 CLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRFFVTRDII-SIFLAVQLV 120
CL W + C CK + + + R+W L+ R I S+ V +
Sbjct: 110 CLHQWIKSSDTRC---CELCKYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAI 166
Query: 121 IASLAYLVYLVDTYQQSWLR------LAWGFDSELSFYYI--CGALLFF 161
+ L L+D + + L W F ++L I G L+F
Sbjct: 167 TCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFM 215
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 17/170 (10%)
Query: 5 SDTSPLIPPSTITEPSEI-DLEAGPGEQIQCRICLETDGRD---FIAPCKCKGTSKYVHR 60
S+ S P++++ PS P Q CRIC +G D I PC C G+ +VH+
Sbjct: 23 SNISKAGSPTSVSAPSRFPRTSVTPSSQDICRIC-HCEGDDESPLITPCHCTGSLHFVHQ 81
Query: 61 ECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRFFVTRDIISIFLAVQLV 120
CL W + C CK + + + R+W L+ R I+ +
Sbjct: 82 ACLQQWIKSSDTRC---CELCKFEFIMETKLKPLRKWEKLQMTASERRKIMCSVTFHVIA 138
Query: 121 IASLAYLVYLVDTYQQSWLR-------LAWGFDSELSFYYI--CGALLFF 161
I + + +Y++ +R L W F ++L I G LLF
Sbjct: 139 ITCVVWSLYVLIDRTAEEIRMGQNNGILEWPFWTKLVVVAIGFTGGLLFM 188
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 5 SDTSPLIPPSTITEPSEI-DLEAGPGEQIQCRICLETDGRD---FIAPCKCKGTSKYVHR 60
S+ S P++++ PS P Q CRIC +G D I PC C G+ +VH+
Sbjct: 23 SNISKAGSPTSVSAPSSFPRTSVTPSSQDICRIC-HCEGDDESPLITPCHCTGSLHFVHQ 81
Query: 61 ECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRFFVTRDII-SIFLAVQL 119
CL W + C CK + + + R+W L+ R I+ S+ V
Sbjct: 82 ACLQQWIKSSDTRC---CELCKFEFIMETKLKPLRKWEKLQMTASERRKIMCSVTFHVIA 138
Query: 120 VIASLAYLVYLVD------TYQQSWLRLAWGFDSELSFYYI--CGALLFF 161
+ + L L+D Q+ L W F ++L I G LLF
Sbjct: 139 ITCVVWSLYVLIDRTAEEIKMGQNNGILEWPFWTKLVVVAIGFTGGLLFM 188
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH-LRVHV 91
CRIC + + + ++PC+C G+ K H+ CL W + R ++ C C YH + +
Sbjct: 162 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWS---CELCYYKYHVIAIST 218
Query: 92 AADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+ + I + L +IAS+++L++ + W R
Sbjct: 219 KNPLQWQAISLTVIEKVQIAAAILGSLFLIASISWLIWSTFSPSAKWQR 267
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 33 QCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH-LRVH 90
QCRIC + + + ++PC+C G+ + H+ CL W + R ++ C C Y L +
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWS---CELCYFKYQVLAIS 165
Query: 91 VAADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+ + I +I L ++AS+++L++ + W R
Sbjct: 166 TKNPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQR 215
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 34 CRICLETDGRD--FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHV 91
CR+C D PCKC G+ +YVH+ECL W + HC CKA + V
Sbjct: 8 CRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKK---THCELCKAKFEF-TKV 63
Query: 92 AADRRWRTLKF 102
++ RT+ F
Sbjct: 64 YSESMPRTIPF 74
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 33 QCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH-LRVH 90
QCRIC + + + ++PC+C G+ + H+ CL W + R ++ C C Y L +
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWS---CELCYFKYQVLAIS 165
Query: 91 VAADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+ + I +I L ++AS+++L++ + W R
Sbjct: 166 TKNPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQR 215
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 17/163 (10%)
Query: 12 PPSTITEPSEID-LEAGPGEQIQCRICLETDGRD---FIAPCKCKGTSKYVHRECLDHWR 67
PPST S P Q CRIC +G D I PC C G+ +VH+ CL W
Sbjct: 53 PPSTTAPVSAFSRTSVTPSNQDICRIC-HCEGDDESPLITPCHCTGSLHFVHQACLQQWI 111
Query: 68 AVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRFFVTRDII-SIFLAVQLVIASLAY 126
+ C CK + + + R+W L+ R I+ S+ V + +
Sbjct: 112 KSSDTRC---CELCKYEFIMETKLKPLRKWEKLQMTASERRKIMCSVTFHVIAITCVVWS 168
Query: 127 LVYLVDTYQQSWLR------LAWGFDSELSFYYI--CGALLFF 161
L L+D + + L W F ++L I G LLF
Sbjct: 169 LYVLIDRTAEEIKQGQVTGILEWPFWTKLVVVAIGFTGGLLFM 211
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH-LRVHV 91
CRIC + + + ++PC+C G+ K H+ CL W + R ++ C C YH + +
Sbjct: 163 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWS---CELCYYKYHVIAIST 219
Query: 92 AADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+ + + + L +IAS+++L++ + W R
Sbjct: 220 KNPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQR 268
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH-LRVHV 91
C+IC + + + + PC+C G+ +Y H+ CL W + R + C C YH + + +
Sbjct: 170 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWT---CELCCYRYHVIAIKM 226
Query: 92 AADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+++ +I++ L +IAS+ +L++ + W R
Sbjct: 227 KQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQR 275
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 28 PGEQIQCRICLETDGRD---FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84
P Q CRIC +G D I PC+C G+ +VH+ CL W + C CK
Sbjct: 72 PSNQDICRIC-HCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRC---CELCKYE 127
Query: 85 YHLRVHVAADRRWRTLKFRFFVTRDII-SIFLAVQLVIASLAYLVYLVDTYQQSWLR--- 140
+ + + R+W L+ R I+ S+ V + + L L+D + +
Sbjct: 128 FIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIRQGQA 187
Query: 141 ---LAWGFDSELSFYYI--CGALLFF 161
L W F ++L I G LLF
Sbjct: 188 TGILEWPFWTKLVVVAIGFTGGLLFM 213
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR-VHV 91
C+IC + + + + PC+C G+ +Y H+ CL W + R + C C YH+ + +
Sbjct: 166 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWT---CELCCYRYHVTAIKM 222
Query: 92 AADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+++ +I++ L +IAS+ +L++ + W R
Sbjct: 223 KQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQR 271
>sp|Q997C2|LAP_MYXVL E3 ubiquitin-protein ligase LAP OS=Myxoma virus (strain Lausanne)
GN=LAP PE=3 SV=1
Length = 206
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 49 CKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLK 101
CKC+G +K VH+ECL+ W + C C++PY+L+ +WR K
Sbjct: 37 CKCRGDNKIVHKECLEEWINT-DVVKNKSCAICESPYNLKRRYKKITKWRCYK 88
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR-VHV 91
C+IC + + + + PC+C G+ +Y H+ CL W + R + C C YH+ + +
Sbjct: 168 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWT---CELCCYRYHVTAIKM 224
Query: 92 AADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+++ +I++ L +IAS+ +L++ + W R
Sbjct: 225 KQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQR 273
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH-LRVHV 91
CRIC + + + ++PC+C G+ + H CL W + R ++ C C Y + +
Sbjct: 143 CRICFQGPEQGELLSPCRCSGSVRCTHEPCLIKWISERGSWS---CELCYYKYQVIAIST 199
Query: 92 AADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLR 140
+W+ + I + L +IAS+++LV+ + W R
Sbjct: 200 KNPLQWQAISLTVIEKVQIAAAVLGSLFLIASISWLVWSSLSPSAKWQR 248
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 49 CKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWR 98
CKC+G +K VH+ECL+ W + C C+ PY+++ +WR
Sbjct: 31 CKCRGDNKIVHKECLEEWINT-DTVKNKSCAICETPYNVKQQYKKLTKWR 79
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 28 PGEQIQCRICLETDGRD---FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84
P Q CRIC +G D I PC C G+ +VH+ CL W + C CK
Sbjct: 74 PSSQDICRIC-HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKYE 129
Query: 85 YHLRVHVAADRRWRTLKFRFFVTRDII-SIFLAVQLVIASLAYLVYLVDTYQQSWLR--- 140
+ + + R+W L+ R I+ S+ V + + L L+D + +
Sbjct: 130 FIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQA 189
Query: 141 ---LAWGFDSELSFYYI--CGALLFF 161
L W F ++L I G LLF
Sbjct: 190 TGILEWPFWTKLVVVAIGFTGGLLFM 215
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 29 GEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
++ CRIC E + D ++PC+C GT +HR CL+HW
Sbjct: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 29 GEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
++ CRIC E + D ++PC+C GT +HR CL+HW
Sbjct: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 29 GEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
++ CRIC E + D ++PC+C GT +HR CL+HW
Sbjct: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 29 GEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
++ CRIC E + D ++PC+C GT +HR CL+HW
Sbjct: 66 NDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHW 104
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 29 GEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
++ CRIC E + D ++PC+C GT +HR CL+HW
Sbjct: 64 NDRPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHW 102
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 9/133 (6%)
Query: 34 CRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAA 93
C IC E G + C C G + VHR CL W + A C C Y+ RV
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTA---CQICGVVYNTRV---- 61
Query: 94 DRRWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLVDTYQQSWLRLAWGFDSELSFYY 153
WR L+ + R L + + I + + WL + G D E+
Sbjct: 62 --VWRPLREMTLLPRLTYQEGLELIVFIFIMTLGAAGLAAATWVWLYIVGGHDPEIDHVA 119
Query: 154 ICGALLFFALLGL 166
+FF L
Sbjct: 120 AAAYYVFFVFYQL 132
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 29 GEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
+ CRIC E + D ++PC+C GT +HR CL+HW
Sbjct: 65 NDHPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHW 103
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5
PE=2 SV=1
Length = 283
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 34 CRICLETDGRD----FIAPCKCKGTSKYVHRECLDHWRAVRE---GFAFAHCTTCKAPY 85
C +C TD D ++ PC+C+G++K+VH+ CL W ++ A C C A Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 34 CRICLETDGRD----FIAPCKCKGTSKYVHRECLDHWRAVRE---GFAFAHCTTCKAPY 85
C +C TD D ++ PC+C+G++K+VH+ CL W ++ A C C A Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 34 CRICLETDGRD----FIAPCKCKGTSKYVHRECLDHWRAVRE---GFAFAHCTTCKAPY 85
C +C TD D ++ PC+C+G++K+VH+ CL W ++ A C C A Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 34 CRICLETDGRD----FIAPCKCKGTSKYVHRECLDHWRAVRE---GFAFAHCTTCKAPY 85
C +C TD D ++ PC+C+G++K+VH+ CL W ++ A C C A Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 34 CRICLETDGRD----FIAPCKCKGTSKYVHRECLDHWRAVRE---GFAFAHCTTCKAPY 85
C +C TD D ++ PC+C+G++K+VH+ CL W ++ A C C A Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5
PE=2 SV=1
Length = 281
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 34 CRICLETDGRD----FIAPCKCKGTSKYVHRECLDHWRAVRE---GFAFAHCTTCKAPY 85
C +C TD D ++ PC+C+G++K+VH+ CL W ++ A C C A Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 34 CRIC---LETDGRDFIAPCKCKGTSKYVHRECLDHW--RAVREGFAFAHCTTCK 82
CRIC + I PCKC G+ +YVH+EC+ W + G + TTC+
Sbjct: 553 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCE 606
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 34 CRIC---LETDGRDFIAPCKCKGTSKYVHRECLDHW--RAVREGFAFAHCTTCK 82
CRIC + I PCKC G+ +YVH+EC+ W + G + TTC+
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCE 607
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 28 PGEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86
P + CRIC E +G ++PC C GT VH+ CL+ W + ++C C +
Sbjct: 58 PSDGPFCRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSN---TSYCELCHTEF- 113
Query: 87 LRVHVAADRRWRTL 100
A ++R R+L
Sbjct: 114 -----AVEKRSRSL 122
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 34 CRIC---LETDGRDFIAPCKCKGTSKYVHRECLDHW--RAVREGFAFAHCTTCK 82
CRIC + I PCKC G+ +YVH++C+ W + G + TTC+
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCE 605
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 34 CRIC---LETDGRDFIAPCKCKGTSKYVHRECLDHW--RAVREGFAFAHCTTCK 82
CRIC + I PCKC G+ +YVH++C+ W + G + TTC+
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCE 605
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 33 QCRICLETDGRD----FIAPCKCKGTSKYVHRECLDHW 66
C +C T+ D +++PC+CKG +K++H+ CL W
Sbjct: 11 HCWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRW 48
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 DLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCK 82
D+E G I C IC E G + I PC C G VH +CL W V A C C+
Sbjct: 5 DVEEGVEGPI-CWICREEVGNEGIHPCACTGELDVVHPQCLSTWLTVSRNTA---CQMCR 60
Query: 83 APYHLRVH 90
Y R
Sbjct: 61 VIYRTRTQ 68
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
CRIC E +G + ++PC C GT VH+ CL+ W
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKW 97
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 34 CRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
CRIC E +G + ++PC C GT VH+ CL+ W
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKW 97
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 34 CRICLET-DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVA 92
CRIC E +G ++PC C GT VH+ CL+ W + ++C C + A
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNT---SYCELCHTEF------A 114
Query: 93 ADRRWR 98
+RR R
Sbjct: 115 VERRPR 120
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 34 CRICLET-DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVA 92
CRIC E +G ++PC C GT VH+ CL+ W + ++C C + A
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNT---SYCELCHTEF------A 114
Query: 93 ADRRWR 98
+RR R
Sbjct: 115 VERRPR 120
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 28 PGEQIQCRICLE-TDGRDFIAPCKCKGTSKYVHRECLDHW 66
P + CRIC E +G ++PC C GT VH+ CL+ W
Sbjct: 58 PSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKW 97
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 24 LEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAH---CTT 80
+E C IC + C CK K VH+ CL+ W F+H C
Sbjct: 1 MEGSDNTNTHCWICKDEYNVS-TNFCNCKNEFKIVHKNCLEEW------INFSHNTKCKI 53
Query: 81 CKAPYHLRVHVAADRRWR 98
C Y+++ + + RW+
Sbjct: 54 CNGKYNIKKNKKSCLRWK 71
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 29 GEQIQCRICLE--TDGRDFIAPCKCKGTSKYVHRECLDHW 66
E+ CR+C T + PC C G+ K++H+ECL W
Sbjct: 4 AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQW 43
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 29 GEQIQCRICLE--TDGRDFIAPCKCKGTSKYVHRECLDHW 66
E+ CR+C T + PC C G+ K++H+ECL W
Sbjct: 4 AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQW 43
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 16 ITEPSEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAF 75
+ S ID E QC IC + + C C G +Y H ECL W ++
Sbjct: 119 VENQSSIDEEGK-----QCWICRDGESLPEARYCNCYGDLQYCHEECLKTWISMS---GE 170
Query: 76 AHCTTCKAPYHLRVHVAADR---RWRTLKFRFFVTRDIISIFLAVQLVIASLAYLVYLV 131
C C+ PY + ++ R + RF I + + IAS YL+ ++
Sbjct: 171 KKCKFCQTPYKVNRQLSLKRGLPGYWDRDDRFVFIAGFIGMGTILAGWIASFFYLLVVL 229
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 29 GEQIQCRICLE--TDGRDFIAPCKCKGTSKYVHRECLDHW 66
E+ CR+C T + PC C G+ K++H+ECL W
Sbjct: 4 AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQW 43
>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1 OS=Homo sapiens
GN=PEAR1 PE=1 SV=1
Length = 1037
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 240 PLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQR---HYHIL----AKRMLTKEYVVE 292
P+ + V+G+ V+G LVA +G R WQ+ H+H+ + R+ EYV+
Sbjct: 749 PVAYNSLGAVIGI-AVLGSLVVALVALFIGYRHWQKGKEHHHLAVAYSSGRLDGSEYVMP 807
Query: 293 DV 294
DV
Sbjct: 808 DV 809
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,809,226
Number of Sequences: 539616
Number of extensions: 5028431
Number of successful extensions: 16065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 15917
Number of HSP's gapped (non-prelim): 161
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)