Query 020734
Match_columns 322
No_of_seqs 167 out of 752
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02825 LAP/PHD finger-like p 99.8 4.3E-19 9.4E-24 156.6 8.2 98 25-129 2-99 (162)
2 PHA02862 5L protein; Provision 99.8 3.2E-19 7E-24 155.6 3.1 65 31-99 2-66 (156)
3 KOG3053 Uncharacterized conser 99.6 1.5E-16 3.3E-21 149.7 3.2 108 17-126 6-120 (293)
4 smart00744 RINGv The RING-vari 99.6 3E-16 6.4E-21 113.9 2.4 47 33-82 1-49 (49)
5 KOG1609 Protein involved in mR 99.6 1.6E-15 3.4E-20 140.9 5.5 78 20-100 67-149 (323)
6 PF12906 RINGv: RING-variant d 99.6 9.8E-16 2.1E-20 110.3 1.6 45 34-81 1-47 (47)
7 COG5183 SSM4 Protein involved 99.5 4.5E-15 9.7E-20 155.7 5.1 77 28-108 9-87 (1175)
8 PF13639 zf-RING_2: Ring finge 96.3 0.0011 2.4E-08 46.1 0.3 41 32-82 1-44 (44)
9 PF12861 zf-Apc11: Anaphase-pr 95.4 0.02 4.3E-07 46.7 3.8 52 31-88 21-84 (85)
10 PF11793 FANCL_C: FANCL C-term 95.2 0.0068 1.5E-07 46.9 0.7 55 31-88 2-68 (70)
11 PHA02929 N1R/p28-like protein; 95.1 0.021 4.6E-07 54.1 3.6 52 29-90 172-231 (238)
12 KOG4628 Predicted E3 ubiquitin 94.8 0.027 5.8E-07 56.2 3.6 48 32-88 230-280 (348)
13 PLN03208 E3 ubiquitin-protein 94.7 0.031 6.8E-07 51.6 3.6 53 30-87 17-80 (193)
14 PF13920 zf-C3HC4_3: Zinc fing 94.1 0.014 3.1E-07 41.6 0.1 47 31-86 2-48 (50)
15 COG5243 HRD1 HRD ubiquitin lig 92.3 0.14 3E-06 52.0 3.8 54 24-87 280-346 (491)
16 cd00162 RING RING-finger (Real 92.1 0.13 2.8E-06 33.8 2.3 43 33-84 1-44 (45)
17 KOG0823 Predicted E3 ubiquitin 91.8 0.34 7.5E-06 46.0 5.6 54 28-88 44-97 (230)
18 smart00184 RING Ring finger. E 90.8 0.2 4.4E-06 31.6 2.2 39 34-81 1-39 (39)
19 PF04120 Iron_permease: Low af 89.7 0.34 7.4E-06 42.4 3.3 78 237-318 12-105 (132)
20 COG5540 RING-finger-containing 89.5 0.27 5.8E-06 48.8 2.8 48 30-86 322-372 (374)
21 PF00097 zf-C3HC4: Zinc finger 89.3 0.21 4.6E-06 33.7 1.4 40 34-81 1-41 (41)
22 KOG1493 Anaphase-promoting com 88.6 0.18 3.8E-06 40.9 0.7 50 33-88 22-83 (84)
23 PHA02926 zinc finger-like prot 88.4 0.37 8E-06 45.9 2.8 58 27-89 166-233 (242)
24 KOG0802 E3 ubiquitin ligase [P 88.1 0.3 6.5E-06 50.8 2.2 48 28-85 288-340 (543)
25 KOG0828 Predicted E3 ubiquitin 86.6 0.46 1E-05 49.8 2.5 55 23-86 563-634 (636)
26 PF07010 Endomucin: Endomucin; 85.7 0.75 1.6E-05 44.0 3.2 22 239-260 191-212 (259)
27 KOG0317 Predicted E3 ubiquitin 85.2 0.81 1.8E-05 44.8 3.3 51 27-87 235-285 (293)
28 smart00504 Ubox Modified RING 84.4 0.95 2.1E-05 32.8 2.6 46 32-87 2-47 (63)
29 PF05478 Prominin: Prominin; 82.9 3.5 7.6E-05 45.0 7.3 22 276-297 196-218 (806)
30 PF13923 zf-C3HC4_2: Zinc fing 80.8 0.64 1.4E-05 31.5 0.5 38 34-81 1-39 (39)
31 PF12678 zf-rbx1: RING-H2 zinc 79.9 0.91 2E-05 35.2 1.2 22 56-82 52-73 (73)
32 PF10766 DUF2592: Protein of u 79.1 3.2 7E-05 29.7 3.6 23 241-263 5-27 (41)
33 COG3763 Uncharacterized protei 75.2 4.4 9.4E-05 32.3 3.7 21 245-265 5-25 (71)
34 PRK01844 hypothetical protein; 69.8 7.1 0.00015 31.2 3.8 14 252-265 12-25 (72)
35 PF12191 stn_TNFRSF12A: Tumour 69.2 1.6 3.5E-05 38.2 0.1 45 240-297 76-120 (129)
36 PRK09823 putative inner membra 69.1 8.3 0.00018 34.6 4.5 38 239-276 38-86 (160)
37 COG5194 APC11 Component of SCF 68.9 4 8.8E-05 33.5 2.3 29 56-89 56-84 (88)
38 PTZ00382 Variant-specific surf 68.9 2.6 5.6E-05 34.8 1.2 27 198-230 29-55 (96)
39 TIGR00599 rad18 DNA repair pro 67.3 5.4 0.00012 40.7 3.4 50 28-87 23-72 (397)
40 PF13829 DUF4191: Domain of un 67.0 12 0.00026 35.6 5.4 52 251-307 53-105 (224)
41 KOG0827 Predicted E3 ubiquitin 66.7 4 8.7E-05 41.9 2.3 46 31-83 4-53 (465)
42 PF10272 Tmpp129: Putative tra 66.5 6.1 0.00013 39.9 3.5 38 47-87 307-352 (358)
43 KOG1785 Tyrosine kinase negati 65.4 2.1 4.6E-05 44.1 0.1 49 30-86 368-416 (563)
44 PRK00523 hypothetical protein; 64.1 11 0.00024 30.1 3.8 13 253-265 14-26 (72)
45 PF11118 DUF2627: Protein of u 64.1 2.9 6.2E-05 33.8 0.6 31 153-184 43-73 (77)
46 PHA03029 hypothetical protein; 63.5 12 0.00026 30.5 4.1 27 249-276 18-49 (92)
47 KOG0802 E3 ubiquitin ligase [P 61.9 5.1 0.00011 41.8 2.2 55 22-90 470-524 (543)
48 COG5219 Uncharacterized conser 61.8 4.6 9.9E-05 45.7 1.8 54 28-87 1466-1524(1525)
49 PF13908 Shisa: Wnt and FGF in 60.2 8.3 0.00018 34.2 2.9 16 237-252 74-89 (179)
50 COG3005 TorC Nitrate/TMAO redu 60.0 6.4 0.00014 36.6 2.2 47 159-206 18-84 (190)
51 PTZ00358 hypothetical protein; 59.5 16 0.00034 37.0 5.0 44 138-195 96-139 (367)
52 KOG3268 Predicted E3 ubiquitin 58.5 12 0.00025 35.1 3.6 62 28-89 162-231 (234)
53 PF12072 DUF3552: Domain of un 57.3 13 0.00029 33.9 3.8 20 247-266 3-22 (201)
54 PF05805 L6_membrane: L6 membr 57.2 83 0.0018 29.5 8.9 47 245-299 91-140 (195)
55 PF05883 Baculo_RING: Baculovi 56.4 6.2 0.00014 34.8 1.4 41 30-70 25-69 (134)
56 PF08999 SP_C-Propep: Surfacta 55.8 15 0.00032 30.3 3.4 30 241-277 36-65 (93)
57 PLN02189 cellulose synthase 55.4 8.3 0.00018 43.8 2.5 50 30-86 33-87 (1040)
58 PF14570 zf-RING_4: RING/Ubox 54.0 9.1 0.0002 28.3 1.7 46 34-86 1-48 (48)
59 PF06570 DUF1129: Protein of u 53.5 15 0.00032 33.5 3.4 16 264-279 188-203 (206)
60 PF10821 DUF2567: Protein of u 53.2 19 0.00042 32.8 4.1 24 251-276 49-72 (167)
61 KOG2930 SCF ubiquitin ligase, 52.3 12 0.00027 32.0 2.5 29 56-89 83-111 (114)
62 PRK10983 putative inner membra 51.1 42 0.00091 33.5 6.4 24 250-274 319-342 (368)
63 KOG4265 Predicted E3 ubiquitin 50.9 20 0.00044 36.2 4.2 53 27-88 286-338 (349)
64 COG4792 EscU Type III secretor 50.3 36 0.00078 34.2 5.7 57 245-312 178-238 (349)
65 PF13829 DUF4191: Domain of un 48.6 34 0.00073 32.7 5.0 37 240-276 29-74 (224)
66 PF11189 DUF2973: Protein of u 46.7 34 0.00075 26.5 4.0 31 239-269 2-32 (65)
67 PF11808 DUF3329: Domain of un 46.6 59 0.0013 26.1 5.5 25 255-281 25-49 (90)
68 PRK11380 hypothetical protein; 46.3 44 0.00096 33.9 5.7 43 258-316 79-121 (353)
69 PF14569 zf-UDP: Zinc-binding 46.2 14 0.00031 30.1 1.8 53 29-88 7-64 (80)
70 PF03672 UPF0154: Uncharacteri 46.1 18 0.00039 28.3 2.3 12 254-265 7-18 (64)
71 PLN02436 cellulose synthase A 46.0 14 0.00031 42.1 2.5 50 30-86 35-89 (1094)
72 TIGR01149 mtrG N5-methyltetrah 45.2 20 0.00043 28.5 2.5 14 256-269 47-60 (70)
73 KOG0804 Cytoplasmic Zn-finger 44.4 9.4 0.0002 39.8 0.7 46 29-86 173-222 (493)
74 PF07800 DUF1644: Protein of u 44.1 29 0.00063 31.6 3.7 38 31-70 2-49 (162)
75 PF04277 OAD_gamma: Oxaloaceta 43.8 1.4E+02 0.003 22.9 7.0 19 245-263 8-26 (79)
76 PRK01026 tetrahydromethanopter 43.5 22 0.00047 28.8 2.5 14 256-269 50-63 (77)
77 PF11044 TMEMspv1-c74-12: Plec 43.0 35 0.00075 25.3 3.2 17 243-259 8-24 (49)
78 PF06305 DUF1049: Protein of u 42.0 64 0.0014 23.8 4.8 28 254-282 28-55 (68)
79 PRK15032 trimethylamine N-oxid 41.5 17 0.00038 37.0 2.1 8 188-195 46-53 (390)
80 PF08041 PetM: PetM family of 40.6 56 0.0012 22.3 3.7 18 246-264 7-24 (31)
81 KOG4112 Signal peptidase subun 39.4 31 0.00066 29.2 2.9 15 250-264 32-46 (101)
82 PF04210 MtrG: Tetrahydrometha 37.9 28 0.00061 27.7 2.3 14 256-269 47-60 (70)
83 PRK05113 electron transport co 37.8 39 0.00085 30.8 3.6 21 247-267 5-25 (191)
84 KOG4414 COP9 signalosome, subu 37.7 17 0.00037 33.2 1.2 12 267-278 81-92 (197)
85 PF12216 m04gp34like: Immune e 37.5 13 0.00029 36.1 0.6 22 240-261 235-256 (272)
86 TIGR03153 cytochr_NrfH cytochr 37.2 20 0.00043 30.9 1.5 15 154-168 3-17 (135)
87 TIGR01944 rnfB electron transp 36.9 34 0.00074 30.2 3.0 18 250-267 6-23 (165)
88 KOG4331 Polytopic membrane pro 36.8 72 0.0016 35.8 5.9 22 254-275 162-183 (865)
89 KOG2927 Membrane component of 36.1 30 0.00065 35.2 2.8 33 143-175 210-246 (372)
90 PF11947 DUF3464: Protein of u 35.8 29 0.00063 31.2 2.4 28 254-281 110-145 (153)
91 PLN02195 cellulose synthase A 34.9 31 0.00067 39.2 2.9 50 30-86 5-59 (977)
92 PF04530 Viral_Beta_CD: Viral 34.9 2.1E+02 0.0046 25.1 7.4 48 264-317 62-109 (122)
93 PLN02638 cellulose synthase A 34.7 31 0.00066 39.6 2.8 50 30-86 16-70 (1079)
94 PF13253 DUF4044: Protein of u 34.6 59 0.0013 22.7 3.2 12 254-265 24-35 (35)
95 COG3763 Uncharacterized protei 34.4 79 0.0017 25.3 4.3 25 251-275 7-31 (71)
96 PF08114 PMP1_2: ATPase proteo 34.2 37 0.00081 24.6 2.2 23 253-276 14-36 (43)
97 COG3167 PilO Tfp pilus assembl 34.1 58 0.0013 30.8 4.1 32 240-271 20-51 (211)
98 TIGR03818 MotA1 flagellar moto 33.2 39 0.00084 32.9 3.0 44 254-297 205-252 (282)
99 TIGR02162 torC trimethylamine- 33.0 23 0.00051 36.1 1.5 9 198-206 75-83 (386)
100 KOG1094 Discoidin domain recep 32.8 77 0.0017 34.9 5.3 52 243-300 391-443 (807)
101 PF12861 zf-Apc11: Anaphase-pr 32.5 25 0.00053 28.9 1.3 31 188-218 22-56 (85)
102 PF11014 DUF2852: Protein of u 32.4 97 0.0021 26.8 4.9 40 236-282 5-44 (115)
103 PF11742 DUF3302: Protein of u 32.2 94 0.002 25.2 4.5 25 254-278 12-36 (78)
104 PF10873 DUF2668: Protein of u 31.9 39 0.00085 30.5 2.5 27 229-260 56-82 (155)
105 PF15176 LRR19-TM: Leucine-ric 31.1 2E+02 0.0043 24.5 6.4 47 236-288 12-58 (102)
106 PF12606 RELT: Tumour necrosis 31.0 43 0.00094 24.9 2.2 7 278-284 22-28 (50)
107 PRK09110 flagellar motor prote 30.9 45 0.00097 32.5 3.0 44 254-297 205-252 (283)
108 PF14634 zf-RING_5: zinc-RING 30.7 37 0.00081 23.4 1.8 40 34-83 2-44 (44)
109 PF13179 DUF4006: Family of un 30.6 77 0.0017 25.0 3.7 15 282-296 39-53 (66)
110 PF10669 Phage_Gp23: Protein g 29.8 1.2E+02 0.0025 26.0 4.9 41 242-284 8-48 (121)
111 PF06305 DUF1049: Protein of u 29.7 1.8E+02 0.004 21.3 5.6 39 239-278 18-56 (68)
112 cd07912 Tweety_N N-terminal do 29.6 97 0.0021 32.0 5.3 18 245-262 84-101 (418)
113 PRK12482 flagellar motor prote 29.4 44 0.00095 32.8 2.6 44 254-297 205-252 (287)
114 PF04246 RseC_MucC: Positive r 29.2 1.3E+02 0.0028 25.4 5.2 11 266-276 110-120 (135)
115 PF12751 Vac7: Vacuolar segreg 28.5 55 0.0012 33.6 3.2 15 253-267 313-327 (387)
116 PF02891 zf-MIZ: MIZ/SP-RING z 28.2 29 0.00063 25.2 0.9 37 45-84 12-50 (50)
117 PF08098 ATX_III: Anemonia sul 28.0 35 0.00076 22.4 1.1 14 199-213 6-19 (27)
118 PF06679 DUF1180: Protein of u 27.3 70 0.0015 29.1 3.4 45 238-283 90-135 (163)
119 PF14967 FAM70: FAM70 protein 27.2 1.2E+02 0.0026 30.5 5.2 25 246-270 197-221 (327)
120 PF15050 SCIMP: SCIMP protein 27.0 1.1E+02 0.0024 27.0 4.4 55 254-311 17-75 (133)
121 PRK07118 ferredoxin; Validated 27.0 71 0.0015 30.9 3.6 24 250-279 8-31 (280)
122 PF12794 MscS_TM: Mechanosensi 26.9 3.3E+02 0.0071 26.9 8.3 19 243-261 204-222 (340)
123 PF02960 K1: K1 glycoprotein; 26.5 60 0.0013 28.3 2.6 49 254-306 78-126 (130)
124 PF13172 PepSY_TM_1: PepSY-ass 26.5 92 0.002 20.7 3.1 19 244-262 14-32 (34)
125 PF15168 TRIQK: Triple QxxK/R 26.2 85 0.0018 25.6 3.3 21 241-261 51-71 (79)
126 COG4956 Integral membrane prot 25.9 87 0.0019 31.7 4.0 32 249-280 79-110 (356)
127 PRK13997 potassium-transportin 25.9 1.3E+02 0.0028 28.2 4.9 34 239-273 5-38 (193)
128 PF12072 DUF3552: Domain of un 25.8 1E+02 0.0022 28.2 4.2 28 251-278 3-30 (201)
129 PF06809 NPDC1: Neural prolife 25.7 20 0.00043 36.1 -0.5 31 250-282 203-233 (341)
130 PLN02400 cellulose synthase 25.3 40 0.00086 38.8 1.7 50 30-86 35-89 (1085)
131 PF10367 Vps39_2: Vacuolar sor 25.2 21 0.00046 28.0 -0.3 31 30-65 77-109 (109)
132 COG3086 RseC Positive regulato 25.2 1.6E+02 0.0035 26.6 5.2 6 279-284 127-132 (150)
133 PF14110 DUF4282: Domain of un 25.1 2E+02 0.0042 23.1 5.3 23 240-262 15-37 (90)
134 PF11772 EpuA: DNA-directed RN 25.0 46 0.001 24.4 1.5 33 251-283 9-47 (47)
135 PF10112 Halogen_Hydrol: 5-bro 24.7 1.6E+02 0.0034 26.5 5.2 7 257-263 36-42 (199)
136 COG5236 Uncharacterized conser 24.6 85 0.0018 32.3 3.7 55 27-89 57-111 (493)
137 PRK11876 petM cytochrome b6-f 24.5 1.3E+02 0.0029 20.6 3.5 11 254-264 16-26 (32)
138 PHA02909 hypothetical protein; 24.3 1.6E+02 0.0034 23.0 4.3 24 243-266 39-62 (72)
139 KOG1645 RING-finger-containing 24.3 66 0.0014 33.5 2.9 50 30-86 3-56 (463)
140 PRK01100 putative accessory ge 24.3 1.7E+02 0.0036 27.1 5.4 28 255-282 177-204 (210)
141 PF01102 Glycophorin_A: Glycop 24.3 1.2E+02 0.0027 26.3 4.2 15 244-258 66-80 (122)
142 PHA02047 phage lambda Rz1-like 24.3 1.2E+02 0.0027 25.7 4.0 29 288-316 65-94 (101)
143 KOG4753 Predicted membrane pro 24.2 92 0.002 27.3 3.4 28 239-266 46-73 (124)
144 PRK13743 conjugal transfer pro 23.8 78 0.0017 28.2 2.9 36 250-285 88-127 (141)
145 PF06365 CD34_antigen: CD34/Po 23.8 68 0.0015 30.1 2.7 32 263-294 115-147 (202)
146 PF03730 Ku_C: Ku70/Ku80 C-ter 23.6 32 0.0007 27.6 0.5 18 273-290 15-32 (96)
147 PF10762 DUF2583: Protein of u 23.2 61 0.0013 26.9 2.0 24 254-278 46-80 (89)
148 TIGR01732 tiny_TM_bacill conse 23.2 55 0.0012 21.5 1.4 18 243-260 8-25 (26)
149 PF14802 TMEM192: TMEM192 fami 23.0 1.9E+02 0.0041 27.6 5.6 24 262-285 68-91 (236)
150 COG4171 SapC ABC-type antimicr 23.0 83 0.0018 30.8 3.2 44 254-297 154-198 (296)
151 PF05702 Herpes_UL49_5: Herpes 22.8 1.2E+02 0.0026 25.6 3.7 31 231-262 54-84 (98)
152 PRK07353 F0F1 ATP synthase sub 22.6 1.8E+02 0.0038 24.5 4.8 19 242-260 8-26 (140)
153 PF13994 PgaD: PgaD-like prote 22.5 81 0.0018 27.2 2.8 46 267-320 79-124 (138)
154 KOG4692 Predicted E3 ubiquitin 22.4 78 0.0017 32.7 3.0 50 29-88 420-469 (489)
155 TIGR02230 ATPase_gene1 F0F1-AT 22.3 1.2E+02 0.0027 25.4 3.7 19 253-271 80-98 (100)
156 PF01788 PsbJ: PsbJ; InterPro 22.0 1.4E+02 0.0031 21.5 3.4 22 239-260 8-29 (40)
157 PF01102 Glycophorin_A: Glycop 22.0 1.2E+02 0.0026 26.3 3.7 24 239-262 65-88 (122)
158 PF03616 Glt_symporter: Sodium 21.9 1.6E+02 0.0034 29.6 5.0 25 253-277 163-187 (368)
159 PF05680 ATP-synt_E: ATP synth 21.4 65 0.0014 26.2 1.8 11 254-264 18-28 (86)
160 COG4758 Predicted membrane pro 21.4 2.7E+02 0.0057 27.0 6.1 33 242-274 59-91 (235)
161 PRK00108 mraY phospho-N-acetyl 21.3 77 0.0017 31.5 2.7 23 269-291 299-323 (344)
162 PRK00523 hypothetical protein; 21.2 2.1E+02 0.0045 23.0 4.6 22 254-275 11-32 (72)
163 PF05934 MCLC: Mid-1-related c 21.1 79 0.0017 33.7 2.8 28 237-265 326-354 (549)
164 PRK09109 motC flagellar motor 21.0 85 0.0018 29.8 2.8 41 254-294 185-225 (246)
165 PHA02649 hypothetical protein; 20.9 1.3E+02 0.0028 25.3 3.5 26 256-281 46-71 (95)
166 PRK04598 tatA twin arginine tr 20.8 75 0.0016 25.9 2.1 17 238-254 5-21 (81)
167 PF12911 OppC_N: N-terminal TM 20.7 1.4E+02 0.003 21.2 3.3 18 246-263 21-38 (56)
168 PF14023 DUF4239: Protein of u 20.6 76 0.0016 28.5 2.3 17 253-269 2-18 (209)
169 COG2976 Uncharacterized protei 20.5 89 0.0019 29.6 2.8 12 265-276 34-45 (207)
170 COG2878 Predicted NADH:ubiquin 20.4 1.1E+02 0.0024 28.8 3.3 21 247-267 5-25 (198)
171 PF05961 Chordopox_A13L: Chord 20.2 1.2E+02 0.0026 24.1 3.0 12 306-317 51-62 (68)
172 PRK01844 hypothetical protein; 20.0 2.3E+02 0.005 22.7 4.6 22 254-275 10-31 (72)
173 smart00249 PHD PHD zinc finger 20.0 33 0.00073 22.4 -0.1 29 33-64 1-30 (47)
No 1
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.78 E-value=4.3e-19 Score=156.64 Aligned_cols=98 Identities=24% Similarity=0.532 Sum_probs=74.2
Q ss_pred cCCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEeeCcccccccceeeE
Q 020734 25 EAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRF 104 (322)
Q Consensus 25 e~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~k~~~~W~~lk~~~ 104 (322)
|+.++.++.||||+++++ ++.+||+|+||++|||++||++|++.++ ...||+|+++|.++...++.++|...+...
T Consensus 2 ~~~s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~---~~~CeiC~~~Y~i~~~~kpl~~W~~~~~dc 77 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK---NKSCKICNGPYNIKKNYKKCTKWRCSFRDC 77 (162)
T ss_pred CCcCCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC---CCcccccCCeEEEEEecCCCccccccCcch
Confidence 456778899999998765 5789999999999999999999999886 578999999999999999999997654321
Q ss_pred eeechhHHHHHHHHHHHHHhheeEE
Q 020734 105 FVTRDIISIFLAVQLVIASLAYLVY 129 (322)
Q Consensus 105 ~err~Il~ifL~l~~lI~svs~lVy 129 (322)
.+...++..+-.+++.+++.+-
T Consensus 78 ---~~~~l~~~llcl~~~~i~~~l~ 99 (162)
T PHA02825 78 ---HDSAIVNSLLCLIVGGITYLLV 99 (162)
T ss_pred ---hhHHHHHHHHHHHHhhhhheee
Confidence 1223333333334444444443
No 2
>PHA02862 5L protein; Provisional
Probab=99.75 E-value=3.2e-19 Score=155.56 Aligned_cols=65 Identities=23% Similarity=0.556 Sum_probs=58.2
Q ss_pred CCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEeeCccccccc
Q 020734 31 QIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRT 99 (322)
Q Consensus 31 ~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~k~~~~W~~ 99 (322)
.++||||++++++ .++||+|+||.||||++||++|++.++ +.+||+|+++|.++.++++.++|+.
T Consensus 2 ~diCWIC~~~~~e-~~~PC~C~GS~K~VHq~CL~~WIn~S~---k~~CeLCkteY~Ik~~yKpf~kW~~ 66 (156)
T PHA02862 2 SDICWICNDVCDE-RNNFCGCNEEYKVVHIKCMQLWINYSK---KKECNLCKTKYNIKKTYVSFKKWNW 66 (156)
T ss_pred CCEEEEecCcCCC-CcccccccCcchhHHHHHHHHHHhcCC---CcCccCCCCeEEEEEccccHHHhhc
Confidence 4789999987643 379999999999999999999998876 5899999999999999999999963
No 3
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.5e-16 Score=149.65 Aligned_cols=108 Identities=23% Similarity=0.543 Sum_probs=74.2
Q ss_pred CCCccccccCCCCCCCeeEEeccCC-C---CccccccccCCCCcccchhHHHHHHHHhcC---cCccccccCCCceeeeE
Q 020734 17 TEPSEIDLEAGPGEQIQCRICLETD-G---RDFIAPCKCKGTSKYVHRECLDHWRAVREG---FAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 17 ~~~~e~~~e~~s~e~~~CRIC~e~e-~---~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~---~~~~~CElCK~~Y~~~~ 89 (322)
..|.+.+..++.+.++.||||+.+| + ..+++||+|+||.||||++||.+|+++|+. .++..|.+|+++|.+..
T Consensus 6 ~~~~~~~~~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 6 RMPLSSLGSDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred ccchhhhcCCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 3444444344556779999999764 3 358999999999999999999999999863 56799999999999987
Q ss_pred eeCcccccccceeeEeeechhHHHHHHHHHHHHHhhe
Q 020734 90 HVAADRRWRTLKFRFFVTRDIISIFLAVQLVIASLAY 126 (322)
Q Consensus 90 ~~k~~~~W~~lk~~~~err~Il~ifL~l~~lI~svs~ 126 (322)
.......|-.-.+.....+ +++|++.-+++.++.|
T Consensus 86 P~l~~~~~~Le~~d~~i~r--~cp~l~~g~~v~~iYW 120 (293)
T KOG3053|consen 86 PQLGPFDRVLERLDILIFR--LCPFLAAGIFVGSIYW 120 (293)
T ss_pred cccChHHHHHHHhhhHHhh--cChHHHHHHHhheeeh
Confidence 6443222221111111111 4677777666655544
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.60 E-value=3e-16 Score=113.88 Aligned_cols=47 Identities=45% Similarity=1.149 Sum_probs=42.5
Q ss_pred eeEEecc--CCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCC
Q 020734 33 QCRICLE--TDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCK 82 (322)
Q Consensus 33 ~CRIC~e--~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK 82 (322)
+||||++ ++++++++||+|+||++|||++||++|+..++ ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---CCcCCCCC
Confidence 5999997 45689999999999999999999999999986 36999996
No 5
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.58 E-value=1.6e-15 Score=140.88 Aligned_cols=78 Identities=33% Similarity=0.696 Sum_probs=62.1
Q ss_pred ccccccCCCCCCCeeEEeccCC--CC--ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee-EeeCcc
Q 020734 20 SEIDLEAGPGEQIQCRICLETD--GR--DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR-VHVAAD 94 (322)
Q Consensus 20 ~e~~~e~~s~e~~~CRIC~e~e--~~--~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~-~~~k~~ 94 (322)
.+.+.++.+.+++.||||+++. .+ +++.||.|+|+.+|||+.|+++|+..++ +..||+|++.|... +..++.
T Consensus 67 ~~~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~---~~~CeiC~~~~~~~~~~~~~~ 143 (323)
T KOG1609|consen 67 AEESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG---NITCEICKSFFINVGTKLKPL 143 (323)
T ss_pred CCCccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc---Ceeeecccccceecceeecce
Confidence 3466667777789999999743 22 7999999999999999999999999887 58999999999976 444444
Q ss_pred cccccc
Q 020734 95 RRWRTL 100 (322)
Q Consensus 95 ~~W~~l 100 (322)
.+|...
T Consensus 144 ~~~~~~ 149 (323)
T KOG1609|consen 144 IVISKV 149 (323)
T ss_pred eehhhh
Confidence 455543
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.55 E-value=9.8e-16 Score=110.27 Aligned_cols=45 Identities=49% Similarity=1.203 Sum_probs=35.3
Q ss_pred eEEeccCC--CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccC
Q 020734 34 CRICLETD--GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTC 81 (322)
Q Consensus 34 CRIC~e~e--~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElC 81 (322)
||||++++ +++|++||+|+||++|||++||++|+..++ ...||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~---~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG---NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT----SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC---CCcCCCC
Confidence 89999753 357999999999999999999999999976 4679998
No 7
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.53 E-value=4.5e-15 Score=155.69 Aligned_cols=77 Identities=27% Similarity=0.692 Sum_probs=67.2
Q ss_pred CCCCCeeEEeccC--CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEeeCcccccccceeeEe
Q 020734 28 PGEQIQCRICLET--DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRRWRTLKFRFF 105 (322)
Q Consensus 28 s~e~~~CRIC~e~--e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~k~~~~W~~lk~~~~ 105 (322)
+++..+||||+.+ +++||-+||+|+||+||+|++||..|+..++ +.+||+||++|+++..+++ .+.+.+++++.
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~---~~kCdiChy~~~Fk~IY~e-~mP~~IPfsiL 84 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG---TKKCDICHYEYKFKDIYKE-DMPQIIPFSIL 84 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC---Ccceeeecceeeeeeeccc-CCCcccceehh
Confidence 4455899999954 5799999999999999999999999999886 6899999999999988874 68899999876
Q ss_pred eec
Q 020734 106 VTR 108 (322)
Q Consensus 106 err 108 (322)
-++
T Consensus 85 ~rk 87 (1175)
T COG5183 85 IRK 87 (1175)
T ss_pred HHH
Confidence 553
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.34 E-value=0.0011 Score=46.07 Aligned_cols=41 Identities=32% Similarity=0.864 Sum_probs=29.1
Q ss_pred CeeEEeccC---CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCC
Q 020734 32 IQCRICLET---DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCK 82 (322)
Q Consensus 32 ~~CRIC~e~---e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK 82 (322)
+.|-||+++ ++.....| |. ...|.+|+++|++.+ ..|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~--C~---H~fh~~Ci~~~~~~~-----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP--CG---HVFHRSCIKEWLKRN-----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET--TS---EEEEHHHHHHHHHHS-----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc--CC---CeeCHHHHHHHHHhC-----CcCCccC
Confidence 368899874 23344555 53 789999999999885 3899985
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.35 E-value=0.02 Score=46.71 Aligned_cols=52 Identities=23% Similarity=0.659 Sum_probs=37.4
Q ss_pred CCeeEEeccC-C-----------CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 31 QIQCRICLET-D-----------GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 31 ~~~CRIC~e~-e-----------~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
.+.|-||+.. | +-|++ =+.|+ .-.|..|+.+|+++..+ +..|++|+.+++++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~--~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSS--KGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccC--CCCCCCcCCeeeeC
Confidence 5788888742 1 12332 34565 66999999999997543 46999999999874
No 10
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.23 E-value=0.0068 Score=46.93 Aligned_cols=55 Identities=29% Similarity=0.652 Sum_probs=26.4
Q ss_pred CCeeEEeccC---CCCc--cc-cccccCCCCcccchhHHHHHHHHhcC------cCccccccCCCceeee
Q 020734 31 QIQCRICLET---DGRD--FI-APCKCKGTSKYVHRECLDHWRAVREG------FAFAHCTTCKAPYHLR 88 (322)
Q Consensus 31 ~~~CRIC~e~---e~~~--LI-sPC~CkGS~kyVH~~CL~~Wi~~s~~------~~~~~CElCK~~Y~~~ 88 (322)
+..|.||++. ++.. ++ ...+|. +..|..||.+|+....+ .-.-.|+.|+.+...+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 3679999963 2222 22 235676 78999999999986532 1135799999987753
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.06 E-value=0.021 Score=54.09 Aligned_cols=52 Identities=23% Similarity=0.775 Sum_probs=37.9
Q ss_pred CCCCeeEEeccC-CCC-------ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 29 GEQIQCRICLET-DGR-------DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 29 ~e~~~CRIC~e~-e~~-------~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
+.+..|-||++. .+. ..+.||. ...|..|+.+|++.+ ..|++|+.++....+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~-----~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK-----NTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC-----CCCCCCCCEeeEEee
Confidence 356899999974 221 1345553 569999999999754 489999999886543
No 12
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.027 Score=56.16 Aligned_cols=48 Identities=33% Similarity=0.819 Sum_probs=37.3
Q ss_pred CeeEEeccC--CCCcc-ccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 32 IQCRICLET--DGRDF-IAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 32 ~~CRIC~e~--e~~~L-IsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
..|-||+|+ +++.+ +-||+ ..-|..|.+.|+...+ ..|++||..-...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~r----~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQTR----TFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhcC----ccCCCCCCcCCCC
Confidence 899999985 34443 68886 4589999999999874 5799999965443
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=94.69 E-value=0.031 Score=51.62 Aligned_cols=53 Identities=19% Similarity=0.536 Sum_probs=40.3
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcC-----------cCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREG-----------FAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~-----------~~~~~CElCK~~Y~~ 87 (322)
+...|-||++.-.++.+.+|. ...+..|+.+|+..+++ .+...|++|+.++..
T Consensus 17 ~~~~CpICld~~~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 458899999877778888863 45788999999875321 124689999998864
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=94.14 E-value=0.014 Score=41.58 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=36.3
Q ss_pred CCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 31 QIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 31 ~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
...|.||++...+..+.||+= ..+-.+|+.+|++. ...|++|+.++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH----~~~C~~C~~~~~~~-----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGH----LCFCEECAERLLKR-----KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCE----EEEEHHHHHHHHHT-----TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCC----hHHHHHHhHHhccc-----CCCCCcCChhhc
Confidence 467999998877788999862 23788999999994 368999999864
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.14 Score=52.03 Aligned_cols=54 Identities=26% Similarity=0.667 Sum_probs=39.4
Q ss_pred ccCCCCCCCeeEEeccC----CC---------CccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 24 LEAGPGEQIQCRICLET----DG---------RDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 24 ~e~~s~e~~~CRIC~e~----e~---------~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
.|+-.++...|-||.++ +. .|---||. ...|.+||+.|.+.++ .|++|+.+...
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ-----TCPICr~p~if 346 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ-----TCPICRRPVIF 346 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc-----CCCcccCcccc
Confidence 34446788999999864 21 12345663 4689999999999764 79999998543
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=92.11 E-value=0.13 Score=33.76 Aligned_cols=43 Identities=33% Similarity=0.855 Sum_probs=30.4
Q ss_pred eeEEeccCCCCc-cccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCc
Q 020734 33 QCRICLETDGRD-FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84 (322)
Q Consensus 33 ~CRIC~e~e~~~-LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~ 84 (322)
.|-||++...++ .+.||. ...|.+|+++|++.. ...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~~----~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKSG----KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHhC----cCCCCCCCCc
Confidence 478898754333 345554 348999999999872 3579999875
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.34 Score=45.97 Aligned_cols=54 Identities=26% Similarity=0.623 Sum_probs=42.9
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
++..-.|-||++..++|.+++|. ..-==.||-+|+..+.+ ...|++||......
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCG-----HLFCWpClyqWl~~~~~--~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCG-----HLFCWPCLYQWLQTRPN--SKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCCEEeecc-----cceehHHHHHHHhhcCC--CeeCCccccccccc
Confidence 35667899999988889999985 12224799999999875 67899999988754
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=90.83 E-value=0.2 Score=31.58 Aligned_cols=39 Identities=31% Similarity=0.778 Sum_probs=28.9
Q ss_pred eEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccC
Q 020734 34 CRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTC 81 (322)
Q Consensus 34 CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElC 81 (322)
|.||++...+..+.||.= ..|..|+++|++.. ...|++|
T Consensus 1 C~iC~~~~~~~~~~~C~H-----~~c~~C~~~~~~~~----~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGH-----TFCRSCIRKWLKSG----NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCC-----hHHHHHHHHHHHhC----cCCCCCC
Confidence 678887766677788653 47999999999832 3568776
No 19
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=89.67 E-value=0.34 Score=42.36 Aligned_cols=78 Identities=18% Similarity=0.341 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhhhhhhhhhhccccccceeecCCCCCCC
Q 020734 237 AGLPLLFIMALIVLGLFTVIGIFYSV----------------LVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTG 300 (322)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~g~~~~~----------------~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~~~~ 300 (322)
+|-|+.|+++++++++.++.|-++|+ |++..+.|+.-.|+=.-+-.|-..=--++++.+.+.++
T Consensus 12 ~gs~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~q~Rd~~al~~KLdeLi~~~~~a~n~li~ 91 (132)
T PF04120_consen 12 AGSPWAFVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNTQNRDTKALQAKLDELIRAVKEARNELID 91 (132)
T ss_pred HCCHHHHHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46688899999999999999987776 67778889999998765544432222334444444333
Q ss_pred CCCCCCCCChHHHHHhhh
Q 020734 301 SDWSPAPLPPEHVQQLKS 318 (322)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (322)
-..|++|+.++++.
T Consensus 92 ----iE~l~~~el~~~~~ 105 (132)
T PF04120_consen 92 ----IEDLTEEELEEIRK 105 (132)
T ss_pred ----cccCCHHHHHHHHH
Confidence 35678888877764
No 20
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.27 Score=48.80 Aligned_cols=48 Identities=25% Similarity=0.750 Sum_probs=36.8
Q ss_pred CCCeeEEeccC---CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET---DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~---e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
.+-.|-||.++ .+.-.+.||+ .-.|..|+++|+..-+ ..|++|+++.+
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~----~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS----NKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc----ccCCccCCCCC
Confidence 45899999874 2345689986 4589999999998432 58999998754
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=89.27 E-value=0.21 Score=33.71 Aligned_cols=40 Identities=33% Similarity=0.803 Sum_probs=30.4
Q ss_pred eEEeccCCCCcc-ccccccCCCCcccchhHHHHHHHHhcCcCccccccC
Q 020734 34 CRICLETDGRDF-IAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTC 81 (322)
Q Consensus 34 CRIC~e~e~~~L-IsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElC 81 (322)
|.||++...++. +.||. ...+..|+.+|++.++ ...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~---~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSG---SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTS---SSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcC---CccCCcC
Confidence 678887655555 78875 4599999999999743 4679887
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=0.18 Score=40.89 Aligned_cols=50 Identities=20% Similarity=0.610 Sum_probs=37.8
Q ss_pred eeEEeccC------------CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 33 QCRICLET------------DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 33 ~CRIC~e~------------e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
.|-||++. |+-||+-- .|. .-.|.-|..+|++.+.+ +..|+.|+.+|+++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~ts--q~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTS--QGQCPMCRQTWQFK 83 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccc--cccCCcchheeEec
Confidence 78888742 23366544 564 56899999999998765 68999999999874
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=88.36 E-value=0.37 Score=45.92 Aligned_cols=58 Identities=19% Similarity=0.521 Sum_probs=40.9
Q ss_pred CCCCCCeeEEeccCC------C---CccccccccCCCCcccchhHHHHHHHHhc-CcCccccccCCCceeeeE
Q 020734 27 GPGEQIQCRICLETD------G---RDFIAPCKCKGTSKYVHRECLDHWRAVRE-GFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e------~---~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~-~~~~~~CElCK~~Y~~~~ 89 (322)
..+.+..|-||+|.- + -.+..+|. ......|+.+|.+.+. +.....|++|+.+|...+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 345679999999741 1 13566664 4477899999998753 223578999999998544
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=0.3 Score=50.79 Aligned_cols=48 Identities=29% Similarity=0.625 Sum_probs=36.6
Q ss_pred CCCCCeeEEeccCCC---C--ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCce
Q 020734 28 PGEQIQCRICLETDG---R--DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPY 85 (322)
Q Consensus 28 s~e~~~CRIC~e~e~---~--~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y 85 (322)
......|.||.|.-. + +-.-||. .-.|..||++|++.++ .|++|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~q-----tCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQQ-----TCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHhC-----cCCcchhhh
Confidence 445789999997522 2 5566663 5699999999999864 799999943
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=0.46 Score=49.79 Aligned_cols=55 Identities=31% Similarity=0.732 Sum_probs=41.5
Q ss_pred cccCCCCCCCeeEEeccC--------C---------CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCce
Q 020734 23 DLEAGPGEQIQCRICLET--------D---------GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPY 85 (322)
Q Consensus 23 ~~e~~s~e~~~CRIC~e~--------e---------~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y 85 (322)
++|+-.+.+..|-||... + .|-+++||. .-.|++||++|.+..+ ..|++|+.+.
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk----l~CPvCR~pL 633 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK----LICPVCRCPL 633 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc----ccCCccCCCC
Confidence 455667788999999752 1 135667986 5689999999999653 6899999875
Q ss_pred e
Q 020734 86 H 86 (322)
Q Consensus 86 ~ 86 (322)
+
T Consensus 634 P 634 (636)
T KOG0828|consen 634 P 634 (636)
T ss_pred C
Confidence 3
No 26
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=85.71 E-value=0.75 Score=43.99 Aligned_cols=22 Identities=32% Similarity=0.855 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 020734 239 LPLLFIMALIVLGLFTVIGIFY 260 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~ 260 (322)
+||+++++||.+.+|.+||++|
T Consensus 191 lpvvIaliVitl~vf~LvgLyr 212 (259)
T PF07010_consen 191 LPVVIALIVITLSVFTLVGLYR 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999865
No 27
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=0.81 Score=44.83 Aligned_cols=51 Identities=22% Similarity=0.654 Sum_probs=41.0
Q ss_pred CCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 27 GPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
.+...+.|-+|+|...+|--.||. .-.=-+|+..|.+++. +|++|+.+++-
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCG-----HiFCWsCI~~w~~ek~-----eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCG-----HIFCWSCILEWCSEKA-----ECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCc-----chHHHHHHHHHHcccc-----CCCcccccCCC
Confidence 345669999999988889999985 2234589999999874 69999998874
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=84.39 E-value=0.95 Score=32.80 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=35.9
Q ss_pred CeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 32 IQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 32 ~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
-.|.||.+--.+|.+.||. .-.-++|+.+|++.+ ..|++|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G-----~v~~~~~i~~~~~~~-----~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSG-----QTYERRAIEKWLLSH-----GTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCC-----CEEeHHHHHHHHHHC-----CCCCCCcCCCCh
Confidence 3688998765568888863 568999999999873 479999988743
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=82.93 E-value=3.5 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=16.6
Q ss_pred hhhhhhh-ccccccceeecCCCC
Q 020734 276 HYHILAK-RMLTKEYVVEDVDGE 297 (322)
Q Consensus 276 ~~~il~k-~~~tk~~~~~~~~~~ 297 (322)
=.|++.. =+.+|+.|..|+|+.
T Consensus 196 i~~l~~~ny~~~~~~v~~~L~~~ 218 (806)
T PF05478_consen 196 IDHLLVQNYSELKDHVSSDLDNI 218 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567776 677888888888876
No 30
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=80.82 E-value=0.64 Score=31.47 Aligned_cols=38 Identities=26% Similarity=0.828 Sum_probs=27.2
Q ss_pred eEEeccCCCCc-cccccccCCCCcccchhHHHHHHHHhcCcCccccccC
Q 020734 34 CRICLETDGRD-FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTC 81 (322)
Q Consensus 34 CRIC~e~e~~~-LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElC 81 (322)
|-||++...++ .+.||. ....++|+++|++.+ ..|++|
T Consensus 1 C~iC~~~~~~~~~~~~CG-----H~fC~~C~~~~~~~~-----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCG-----HSFCKECIEKYLEKN-----PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTS-----EEEEHHHHHHHHHCT-----SB-TTT
T ss_pred CCCCCCcccCcCEECCCC-----CchhHHHHHHHHHCc-----CCCcCC
Confidence 66888766667 467764 558999999999873 478876
No 31
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=79.93 E-value=0.91 Score=35.23 Aligned_cols=22 Identities=23% Similarity=0.810 Sum_probs=17.8
Q ss_pred cccchhHHHHHHHHhcCcCccccccCC
Q 020734 56 KYVHRECLDHWRAVREGFAFAHCTTCK 82 (322)
Q Consensus 56 kyVH~~CL~~Wi~~s~~~~~~~CElCK 82 (322)
...|..||.+|++.+ ..|++|+
T Consensus 52 H~FH~~Ci~~Wl~~~-----~~CP~CR 73 (73)
T PF12678_consen 52 HIFHFHCISQWLKQN-----NTCPLCR 73 (73)
T ss_dssp EEEEHHHHHHHHTTS-----SB-TTSS
T ss_pred CCEEHHHHHHHHhcC-----CcCCCCC
Confidence 569999999999765 3899996
No 32
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=79.10 E-value=3.2 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020734 241 LLFIMALIVLGLFTVIGIFYSVL 263 (322)
Q Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~ 263 (322)
++|+++++=+++..|+|+.||+=
T Consensus 5 l~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 5 LAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777778999999974
No 33
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.18 E-value=4.4 Score=32.28 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020734 245 MALIVLGLFTVIGIFYSVLVA 265 (322)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~~~~ 265 (322)
+++++++++.++|++-|||+|
T Consensus 5 lail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555677777777765
No 34
>PRK01844 hypothetical protein; Provisional
Probab=69.78 E-value=7.1 Score=31.17 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 020734 252 LFTVIGIFYSVLVA 265 (322)
Q Consensus 252 ~~~~~g~~~~~~~~ 265 (322)
+..|+|++-||++|
T Consensus 12 ~~li~G~~~Gff~a 25 (72)
T PRK01844 12 VALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 44688888888876
No 35
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=69.15 E-value=1.6 Score=38.24 Aligned_cols=45 Identities=29% Similarity=0.567 Sum_probs=1.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeecCCCC
Q 020734 240 PLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGE 297 (322)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~ 297 (322)
+++.....-++.|+.++|++-||++ |.|++| ||.+|- =||.-+||
T Consensus 76 ~l~~pi~~sal~v~lVl~llsg~lv--------~rrcrr---r~~~tt--PIeeTgg~ 120 (129)
T PF12191_consen 76 PLLWPILGSALSVVLVLALLSGFLV--------WRRCRR---REKFTT--PIEETGGE 120 (129)
T ss_dssp SSS-------------------------------------------------------
T ss_pred ceehhhhhhHHHHHHHHHHHHHHHH--------Hhhhhc---cccCCC--cccccCCC
Confidence 4444444444555455666666654 677775 666664 67777777
No 36
>PRK09823 putative inner membrane protein; Provisional
Probab=69.07 E-value=8.3 Score=34.62 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhh
Q 020734 239 LPLLFIMALIVLGLFTVIGIFYSVLVATMV-----------GQRIWQRH 276 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~ri~~r~ 276 (322)
+|.|+...+-++=+|.+++.+||-+.|.+- .|.||+|-
T Consensus 38 ~~~lll~i~~i~plf~~l~w~~g~~pAlLTGVa~AclP~kiyq~~~~R~ 86 (160)
T PRK09823 38 EPLLLLVIIQVLPLFLLLSWTTGAIPALLTGVAVACLPEKIYQQKIYRC 86 (160)
T ss_pred CchhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 577788888888899999999999888663 58999994
No 37
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=68.87 E-value=4 Score=33.46 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=25.1
Q ss_pred cccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 56 KYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 56 kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
...|..|..+|++.++ .|++++.+|++..
T Consensus 56 HaFH~HCI~rWL~Tk~-----~CPld~q~w~~~~ 84 (88)
T COG5194 56 HAFHDHCIYRWLDTKG-----VCPLDRQTWVLAD 84 (88)
T ss_pred hHHHHHHHHHHHhhCC-----CCCCCCceeEEec
Confidence 4589999999999975 7999999998754
No 38
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=68.86 E-value=2.6 Score=34.77 Aligned_cols=27 Identities=19% Similarity=0.525 Sum_probs=17.5
Q ss_pred ccccCCCCCCcccccCCccccccCCCCCCcccc
Q 020734 198 ICADCHLPGTLCMWTDCTTCFESCASTASECGC 230 (322)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 230 (322)
.|+.|.-+ ..|..|.+|+.-+.+.|..
T Consensus 29 ~C~~C~~~------~~C~~C~~GY~~~~~~Cv~ 55 (96)
T PTZ00382 29 NCKSCVVD------GVCGECNSGFSLDNGKCVS 55 (96)
T ss_pred CCcCCCCC------CccccCcCCcccCCCcccc
Confidence 56666543 3467788887767777753
No 39
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.29 E-value=5.4 Score=40.74 Aligned_cols=50 Identities=16% Similarity=0.440 Sum_probs=38.6
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
-++...|.||++.-.++.+.||. ......|+.+|+..+ ..|++|+.++..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCg-----H~FCs~CI~~~l~~~-----~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCS-----HTFCSLCIRRCLSNQ-----PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCC-----CchhHHHHHHHHhCC-----CCCCCCCCcccc
Confidence 33567999999865667888864 456788999999753 479999999864
No 40
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=66.99 E-value=12 Score=35.62 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhccccccceeecCCCCCCCCCCCCCC
Q 020734 251 GLFTVIGIFYSVLVATMVGQRIWQRH-YHILAKRMLTKEYVVEDVDGEMTGSDWSPAP 307 (322)
Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~ri~~r~-~~il~k~~~tk~~~~~~~~~~~~~~~~~~~~ 307 (322)
.+|.|+||+.|+++|+++..|--||- |.=+.-+-=.-.-+.+.+.+. |+.++
T Consensus 53 ~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~~-----W~~~~ 105 (224)
T PF13829_consen 53 WYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRRG-----WRVTE 105 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcCC-----cccCC
Confidence 34567788888888888877766663 444444433444555555554 87766
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=4 Score=41.90 Aligned_cols=46 Identities=24% Similarity=0.723 Sum_probs=31.2
Q ss_pred CCeeEEeccC-CC-Ccc--ccccccCCCCcccchhHHHHHHHHhcCcCccccccCCC
Q 020734 31 QIQCRICLET-DG-RDF--IAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKA 83 (322)
Q Consensus 31 ~~~CRIC~e~-e~-~~L--IsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~ 83 (322)
...|.||-+. +. .++ |+.| - .-.|..||.+|+..-.+ ++.|++|+-
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~c--G---hifh~~cl~qwfe~~Ps--~R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTC--G---HIFHTTCLTQWFEGDPS--NRGCPICQI 53 (465)
T ss_pred cceeeEeccCCccccccccccch--h---hHHHHHHHHHHHccCCc--cCCCCceee
Confidence 3689999543 22 223 3333 2 45899999999987653 378999993
No 42
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=66.51 E-value=6.1 Score=39.88 Aligned_cols=38 Identities=29% Similarity=0.739 Sum_probs=28.4
Q ss_pred cccccCCCCcccchhHHHHHHHHhcC--------cCccccccCCCceee
Q 020734 47 APCKCKGTSKYVHRECLDHWRAVREG--------FAFAHCTTCKAPYHL 87 (322)
Q Consensus 47 sPC~CkGS~kyVH~~CL~~Wi~~s~~--------~~~~~CElCK~~Y~~ 87 (322)
.+|.|+ --==.+||.+|+.+++. ..+..|+.|+++|=+
T Consensus 307 ~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 307 QQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred cccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 367775 12257899999998863 246889999999865
No 43
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=65.40 E-value=2.1 Score=44.12 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=39.2
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
.-..|+||-|.+.+.-|.||. ...-..||..|..++++ ..|+.|+.+..
T Consensus 368 TFeLCKICaendKdvkIEPCG-----HLlCt~CLa~WQ~sd~g---q~CPFCRcEIK 416 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCG-----HLLCTSCLAAWQDSDEG---QTCPFCRCEIK 416 (563)
T ss_pred hHHHHHHhhccCCCccccccc-----chHHHHHHHhhcccCCC---CCCCceeeEec
Confidence 347899999988888899985 23556899999988753 68999988765
No 44
>PRK00523 hypothetical protein; Provisional
Probab=64.08 E-value=11 Score=30.14 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 020734 253 FTVIGIFYSVLVA 265 (322)
Q Consensus 253 ~~~~g~~~~~~~~ 265 (322)
..|+|++-||++|
T Consensus 14 ~li~G~~~Gffia 26 (72)
T PRK00523 14 LLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3688888888876
No 45
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=64.06 E-value=2.9 Score=33.78 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=26.3
Q ss_pred EeehhHHHHHHHhhhhheeeeccccccccccc
Q 020734 153 YICGALLFFALLGLSGCFITCYDRRVRNDLAQ 184 (322)
Q Consensus 153 yi~GaliFfvilgf~g~fl~c~~r~v~~~l~~ 184 (322)
++.|.++|-.=++|+|+|++..||+ ||+-|.
T Consensus 43 fl~G~~lf~~G~~Fi~GfI~~RDRK-rnkV~p 73 (77)
T PF11118_consen 43 FLAGLLLFAIGVGFIAGFILHRDRK-RNKVQP 73 (77)
T ss_pred HHHHHHHHHHHHHHHHhHhheeecc-ccccch
Confidence 5789999999999999999988887 777653
No 46
>PHA03029 hypothetical protein; Provisional
Probab=63.50 E-value=12 Score=30.47 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHhhhh
Q 020734 249 VLGLFTVIGIFYSVLVATM-----VGQRIWQRH 276 (322)
Q Consensus 249 ~~~~~~~~g~~~~~~~~~~-----~~~ri~~r~ 276 (322)
.+++ +++|+..|+++.+= .-|.|=+|+
T Consensus 18 ilil-a~igiiwg~llsi~k~raai~qnirsrr 49 (92)
T PHA03029 18 ILIL-AIIGIIWGFLLSINKIRAAIDQNIRSRR 49 (92)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 99999999998753 345565554
No 47
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.93 E-value=5.1 Score=41.80 Aligned_cols=55 Identities=25% Similarity=0.484 Sum_probs=40.2
Q ss_pred ccccCCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 22 IDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 22 ~~~e~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
.+.|+-....+.|+||+++. ..-+.||. |..||++|...+. .|++|+........
T Consensus 470 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~--------~~~~l~~~~~~~~-----~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 470 ATPSQLREPNDVCAICYQEM-SARITPCS--------HALCLRKWLYVQE-----VCPLCHTYMKEDDF 524 (543)
T ss_pred CChhhhhcccCcchHHHHHH-Hhcccccc--------chhHHHhhhhhcc-----ccCCCchhhhcccc
Confidence 34455556679999998755 34566766 9999999999874 69999876665443
No 48
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.84 E-value=4.6 Score=45.72 Aligned_cols=54 Identities=26% Similarity=0.663 Sum_probs=36.2
Q ss_pred CCCCCeeEEeccC---CCCccc-ccc-ccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLET---DGRDFI-APC-KCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~---e~~~LI-sPC-~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
-+....|-||+.- -+..+- .-| -|| .-.|-.||-+|.+++++ ..|++|+.++++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~---s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSAR---SNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCC---CCCCcccccccc
Confidence 3345789999841 122221 111 233 45899999999999874 789999987764
No 49
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=60.16 E-value=8.3 Score=34.24 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=8.5
Q ss_pred ccchHHHHHHHHHHHH
Q 020734 237 AGLPLLFIMALIVLGL 252 (322)
Q Consensus 237 ~~~~~~~~~~~~~~~~ 252 (322)
.+.++++|+.||+.++
T Consensus 74 ~~~~~~iivgvi~~Vi 89 (179)
T PF13908_consen 74 IYFITGIIVGVICGVI 89 (179)
T ss_pred ccceeeeeeehhhHHH
Confidence 4445556665555444
No 50
>COG3005 TorC Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit [Energy production and conversion]
Probab=59.97 E-value=6.4 Score=36.63 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=33.5
Q ss_pred HHHHHHhhhhheeeecccccccccccchhhhccccCC--------------------CCccccCCCCC
Q 020734 159 LFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQ--------------------PGICADCHLPG 206 (322)
Q Consensus 159 iFfvilgf~g~fl~c~~r~v~~~l~~~~~~~~~~c~~--------------------~~~~~~~~~~~ 206 (322)
.++.++||++++++=.+-++-.++-+. .++|..|=. +--|+|||.|-
T Consensus 18 ~~l~~~gfv~G~~~w~~~~~~~~~tnt-~eFCvsCH~m~~vy~E~~~tvH~~n~sGvrA~C~dCHiPh 84 (190)
T COG3005 18 GTLLLIGFVVGILFWGGFNVGLELTNT-EEFCVSCHEMNRVYEEYMGTVHFSNRSGVRATCSDCHIPH 84 (190)
T ss_pred HHHHHHHHHHhheeecchhHHHHhcCC-cHHHHHhhhhHHHHHHHhcccCcccCCcccccCCCcccCc
Confidence 355688899998887777766555443 588888844 34588888876
No 51
>PTZ00358 hypothetical protein; Provisional
Probab=59.53 E-value=16 Score=37.02 Aligned_cols=44 Identities=32% Similarity=0.764 Sum_probs=27.9
Q ss_pred hhhhhcCcccceeEEEeehhHHHHHHHhhhhheeeecccccccccccchhhhccccCC
Q 020734 138 WLRLAWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQ 195 (322)
Q Consensus 138 ~iRlgrGF~s~v~~yyi~GaliFfvilgf~g~fl~c~~r~v~~~l~~~~~~~~~~c~~ 195 (322)
|++...+.++.++|| |+. -+++|..|+-++|-- -|.-|||-||-
T Consensus 96 ~~~~~~~~~~~ypIY---gia--vvlL~ILggTLyCGW---------KCnLFcRPCCk 139 (367)
T PTZ00358 96 WLSVSLGIKWTYPIY---GIA--VVLLGILGGTLYCGW---------KCNLFCRPCCK 139 (367)
T ss_pred hhhhhhcCCcCCchH---HHH--HHHHHHHHhhhhccc---------ccCcccccccc
Confidence 444444555666665 553 356788888776633 36689999983
No 52
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.48 E-value=12 Score=35.13 Aligned_cols=62 Identities=31% Similarity=0.612 Sum_probs=37.4
Q ss_pred CCCCCeeEEecc--CCCCccccccccCCCCcccchhHHHHHHHH----hcCcC--ccccccCCCceeeeE
Q 020734 28 PGEQIQCRICLE--TDGRDFIAPCKCKGTSKYVHRECLDHWRAV----REGFA--FAHCTTCKAPYHLRV 89 (322)
Q Consensus 28 s~e~~~CRIC~e--~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~----s~~~~--~~~CElCK~~Y~~~~ 89 (322)
+++...|-||+. -++..--.-|.-.---|-.|+-||-.|++. +++++ +-.|+-|..+..++.
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 445566777763 111111123333333478999999999974 33333 568999998876653
No 53
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=57.33 E-value=13 Score=33.89 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020734 247 LIVLGLFTVIGIFYSVLVAT 266 (322)
Q Consensus 247 ~~~~~~~~~~g~~~~~~~~~ 266 (322)
|+++++++++|++.|+++..
T Consensus 3 ii~~i~~~~vG~~~G~~~~~ 22 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRK 22 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777777643
No 54
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=57.18 E-value=83 Score=29.48 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhhhccccccceeecCCCCCC
Q 020734 245 MALIVLGLFTVIGIFYSVLVATMVGQR---IWQRHYHILAKRMLTKEYVVEDVDGEMT 299 (322)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~~~~~~~~~r---i~~r~~~il~k~~~tk~~~~~~~~~~~~ 299 (322)
+.-++.++++++|-.|.|+++.++..+ ... ..++=+|--+|.+|..+
T Consensus 91 ~~Sil~a~igi~Ga~Yc~ivS~~aL~~GP~C~~--------~~~~W~ypF~~~~~~YL 140 (195)
T PF05805_consen 91 FLSILFAAIGILGAGYCFIVSGLALSEGPLCCT--------GNLQWFYPFKDTNGNYL 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCeeec--------cCCcCCCCCCCCCCCcc
Confidence 444455556999999999999987543 111 25555666666666544
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=56.35 E-value=6.2 Score=34.83 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=26.1
Q ss_pred CCCeeEEeccC--C-CCccccccccCCCC-cccchhHHHHHHHHh
Q 020734 30 EQIQCRICLET--D-GRDFIAPCKCKGTS-KYVHRECLDHWRAVR 70 (322)
Q Consensus 30 e~~~CRIC~e~--e-~~~LIsPC~CkGS~-kyVH~~CL~~Wi~~s 70 (322)
....|+||++. + ++-..-+|.-.-.+ +..|.+|+++|.+.+
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 46889999974 3 23334444333222 348999999997554
No 56
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=55.82 E-value=15 Score=30.33 Aligned_cols=30 Identities=33% Similarity=0.644 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020734 241 LLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHY 277 (322)
Q Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~ 277 (322)
+|+|++++||+|..|+| +++| |--+-|.|-
T Consensus 36 lliivvVvVlvVvvivg----~LLM---GLhmsqkHT 65 (93)
T PF08999_consen 36 LLIIVVVVVLVVVVIVG----ALLM---GLHMSQKHT 65 (93)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHH------------
T ss_pred EEEEEEeeehhHHHHHH----HHHH---Hhhhhhhhh
Confidence 56666666666656655 4444 344556663
No 57
>PLN02189 cellulose synthase
Probab=55.41 E-value=8.3 Score=43.78 Aligned_cols=50 Identities=28% Similarity=0.620 Sum_probs=37.9
Q ss_pred CCCeeEEeccC----CCCccccccc-cCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET----DGRDFIAPCK-CKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~----e~~~LIsPC~-CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
...+|+||-++ .++++--.|+ |. --|=+.|.+.=+++- +..|+.||++|.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cyeyer~eg----~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCYEYERREG----TQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---CccccchhhhhhhcC----CccCcccCCchh
Confidence 44699999863 3456667887 85 459999997666553 479999999998
No 58
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=53.99 E-value=9.1 Score=28.26 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=20.6
Q ss_pred eEEeccC--CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 34 CRICLET--DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 34 CRIC~e~--e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
|.+|-+. +.+.-+.||.|. ++-|+.=|.+..++ ..-.|+-||.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~-~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILEN-EGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTS-S-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhc-cCCCCCCCCCCCC
Confidence 3456542 234567999997 45566667766532 2468999999984
No 59
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=53.51 E-value=15 Score=33.49 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhhh
Q 020734 264 VATMVGQRIWQRHYHI 279 (322)
Q Consensus 264 ~~~~~~~ri~~r~~~i 279 (322)
+.+.++.+-++|||||
T Consensus 188 ~i~~~~~~~lkkk~~i 203 (206)
T PF06570_consen 188 VIAFALRFYLKKKYNI 203 (206)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3456678889999998
No 60
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=53.24 E-value=19 Score=32.81 Aligned_cols=24 Identities=33% Similarity=0.720 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020734 251 GLFTVIGIFYSVLVATMVGQRIWQRH 276 (322)
Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~ri~~r~ 276 (322)
++|+.+|+.+|+++|..+-| |+||
T Consensus 49 a~f~~l~lv~Gvvaav~~W~--~R~~ 72 (167)
T PF10821_consen 49 ALFVLLGLVLGVVAAVAVWL--WRRR 72 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 45556666666666666655 5554
No 61
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=12 Score=32.00 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=24.6
Q ss_pred cccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 56 KYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 56 kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
...|.-|+.+|++.++ .|++|..+..++.
T Consensus 83 HaFH~hCisrWlktr~-----vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN-----VCPLDNKEWVFQR 111 (114)
T ss_pred hHHHHHHHHHHHhhcC-----cCCCcCcceeEee
Confidence 4589999999999985 7999999887754
No 62
>PRK10983 putative inner membrane protein; Provisional
Probab=51.11 E-value=42 Score=33.47 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020734 250 LGLFTVIGIFYSVLVATMVGQRIWQ 274 (322)
Q Consensus 250 ~~~~~~~g~~~~~~~~~~~~~ri~~ 274 (322)
..+|.++|++.|-.+++++ +.+|+
T Consensus 319 ~~~fG~~G~~lgp~i~a~~-~~l~~ 342 (368)
T PRK10983 319 LIAFGMIGLFIGPVVLAVS-YRLFS 342 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3448999999999888765 44554
No 63
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=20 Score=36.17 Aligned_cols=53 Identities=21% Similarity=0.518 Sum_probs=37.1
Q ss_pred CCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 27 GPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
++++.+.|=||+.+..+-++-||+=- ..=..|-+.-+-. +..|++|+.++..-
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHL----CLCs~Ca~~Lr~q-----~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHL----CLCSGCAKSLRYQ-----TNNCPICRQPIEEL 338 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhh----ehhHhHHHHHHHh-----hcCCCccccchHhh
Confidence 34678999999987777899998621 2334576655522 24699999998743
No 64
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=50.27 E-value=36 Score=34.23 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----hhccccccceeecCCCCCCCCCCCCCCCChHH
Q 020734 245 MALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHIL----AKRMLTKEYVVEDVDGEMTGSDWSPAPLPPEH 312 (322)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il----~k~~~tk~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (322)
.++-.+.....+|++.|++++.++=+ -+|||-++= .|-|.+.|| .|.+|. |.+-.+-
T Consensus 178 ~Vv~~~~~~L~~g~~~~ylv~sv~Dy-~fqr~~~~K~lkMSKdEVkRE~--Kd~eG~--------PeiKskR 238 (349)
T COG4792 178 PVVSFLLRLLWVGVAVGYLVFSVADY-AFQRYQILKELKMSKDEVKREY--KDMEGD--------PEIKSKR 238 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCHHHHHHHH--hcccCC--------chhhHHH
Confidence 33333444456788888888877654 578876552 233444555 478888 7776654
No 65
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=48.63 E-value=34 Score=32.65 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhh
Q 020734 240 PLLFIMALIVLGLFTVIGIFY---------SVLVATMVGQRIWQRH 276 (322)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~ri~~r~ 276 (322)
|+++..+++++++|.++|+++ |++++.++.-=|+.|+
T Consensus 29 ~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rr 74 (224)
T PF13829_consen 29 WLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRR 74 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777777765 4555666666666664
No 66
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=46.72 E-value=34 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.466 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020734 239 LPLLFIMALIVLGLFTVIGIFYSVLVATMVG 269 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 269 (322)
.|++.+.+.+++++.|+-++.=|+++..+.-
T Consensus 2 ~~llY~~af~~L~~~a~~~m~~g~~~~~~~~ 32 (65)
T PF11189_consen 2 FPLLYILAFTILLFLAFRNMIRGWIANSIES 32 (65)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 3677888888888777778888888777763
No 67
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=46.56 E-value=59 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020734 255 VIGIFYSVLVATMVGQRIWQRHYHILA 281 (322)
Q Consensus 255 ~~g~~~~~~~~~~~~~ri~~r~~~il~ 281 (322)
++|-+..+++++++++=+| |++=|.
T Consensus 25 ~~g~~~~~l~~~l~~~l~w--h~~~l~ 49 (90)
T PF11808_consen 25 LFGHLWWALLLGLLLYLFW--HLYQLY 49 (90)
T ss_pred HHhHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3444445666777777776 444443
No 68
>PRK11380 hypothetical protein; Provisional
Probab=46.32 E-value=44 Score=33.86 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccceeecCCCCCCCCCCCCCCCChHHHHHh
Q 020734 258 IFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPAPLPPEHVQQL 316 (322)
Q Consensus 258 ~~~~~~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (322)
.+|++++..++.+||+.| +|||+-.+|--. |- +||+.|+-|-|
T Consensus 79 ~~~~~~~l~~~~~~~~~~-----~~~eq~~yy~~~---~~--------~~LteEq~r~L 121 (353)
T PRK11380 79 FLYLLIMLGLIVRAGFKK-----AKKEQLRYYQAK---GI--------EPLSEEKRQAL 121 (353)
T ss_pred HHHHHHHHHHHHHHHHcc-----chHHHHHHHHHc---CC--------CCCCHHHHHHH
Confidence 468888889999999963 467777666432 22 67777665543
No 69
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.17 E-value=14 Score=30.05 Aligned_cols=53 Identities=28% Similarity=0.515 Sum_probs=23.1
Q ss_pred CCCCeeEEeccC-----CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 29 GEQIQCRICLET-----DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~-----e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
.+..+|.||-+. +++.++.-=.|. --|=+.|.+.=++.- ...|..||++|...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~---fPvCr~CyEYErkeg----~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA---FPVCRPCYEYERKEG----NQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS--------HHHHHHHHHTS-----SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC---CccchhHHHHHhhcC----cccccccCCCcccc
Confidence 466899999752 234444322343 458899998877764 47999999999843
No 70
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=46.13 E-value=18 Score=28.29 Aligned_cols=12 Identities=17% Similarity=0.503 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH
Q 020734 254 TVIGIFYSVLVA 265 (322)
Q Consensus 254 ~~~g~~~~~~~~ 265 (322)
.|+|++-||++|
T Consensus 7 li~G~~~Gff~a 18 (64)
T PF03672_consen 7 LIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHH
Confidence 578888888876
No 71
>PLN02436 cellulose synthase A
Probab=46.04 E-value=14 Score=42.13 Aligned_cols=50 Identities=26% Similarity=0.554 Sum_probs=37.1
Q ss_pred CCCeeEEeccC----CCCccccccc-cCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET----DGRDFIAPCK-CKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~----e~~~LIsPC~-CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+..+|+||-++ .++++--.|+ |. --|=+.|.+.=+++- +..|+.||++|.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cyeyer~eg----~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCYEYERREG----NQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCC---CccccchhhhhhhcC----CccCcccCCchh
Confidence 44699999863 3455667777 75 458999997665543 479999999998
No 72
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=45.18 E-value=20 Score=28.54 Aligned_cols=14 Identities=29% Similarity=0.709 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH
Q 020734 256 IGIFYSVLVATMVG 269 (322)
Q Consensus 256 ~g~~~~~~~~~~~~ 269 (322)
+||+||+++++++.
T Consensus 47 iGIlYG~viGlli~ 60 (70)
T TIGR01149 47 IGILYGLVIGLILF 60 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 68888888877653
No 73
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.38 E-value=9.4 Score=39.84 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=31.8
Q ss_pred CCCCeeEEeccC--CC--CccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 29 GEQIQCRICLET--DG--RDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 29 ~e~~~CRIC~e~--e~--~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
-|-|.|-+|+|. ++ ..+..+|. .-.|..||++|=. .+|++|++.-.
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~-------~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWD-------SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhccc-------CcChhhhhhcC
Confidence 366999999973 32 23445543 4589999999955 46888887544
No 74
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=44.12 E-value=29 Score=31.62 Aligned_cols=38 Identities=29% Similarity=0.788 Sum_probs=26.2
Q ss_pred CCeeEEeccCCCCcc----------ccccccCCCCcccchhHHHHHHHHh
Q 020734 31 QIQCRICLETDGRDF----------IAPCKCKGTSKYVHRECLDHWRAVR 70 (322)
Q Consensus 31 ~~~CRIC~e~e~~~L----------IsPC~CkGS~kyVH~~CL~~Wi~~s 70 (322)
...|-||++-+-|.. -.|=.|. ..|-|.+||+|..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~--Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCD--TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccC--CccchhHHHHHHHHHh
Confidence 468999998654332 2333466 3578999999998754
No 75
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=43.80 E-value=1.4e+02 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.210 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020734 245 MALIVLGLFTVIGIFYSVL 263 (322)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~~ 263 (322)
+++-..+||.++.+++.++
T Consensus 8 ~i~Gm~iVF~~L~lL~~~i 26 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLILVI 26 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555443
No 76
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=43.46 E-value=22 Score=28.84 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 020734 256 IGIFYSVLVATMVG 269 (322)
Q Consensus 256 ~g~~~~~~~~~~~~ 269 (322)
+||+||+++++++.
T Consensus 50 iGIlYG~viGlli~ 63 (77)
T PRK01026 50 IGILYGLVIGLLIV 63 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 57788877776653
No 77
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=42.98 E-value=35 Score=25.26 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020734 243 FIMALIVLGLFTVIGIF 259 (322)
Q Consensus 243 ~~~~~~~~~~~~~~g~~ 259 (322)
+..+||+|++||-+|+.
T Consensus 8 iFsvvIil~If~~iGl~ 24 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLS 24 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777777653
No 78
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.99 E-value=64 Score=23.80 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020734 254 TVIGIFYSVLVATMVGQRIWQRHYHILAK 282 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r~~~il~k 282 (322)
.++|++.|.+++.... .-++|.+.=++|
T Consensus 28 f~~G~llg~l~~~~~~-~~~r~~~~~~~k 55 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSR-LRLRRRIRRLRK 55 (68)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4567777776554433 334444444444
No 79
>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional
Probab=41.49 E-value=17 Score=36.98 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=6.6
Q ss_pred hhccccCC
Q 020734 188 ELCLCCCQ 195 (322)
Q Consensus 188 ~~~~~c~~ 195 (322)
++|..|-.
T Consensus 46 eFC~sCH~ 53 (390)
T PRK15032 46 EFCVSCHS 53 (390)
T ss_pred hHhHhcCC
Confidence 89988865
No 80
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=40.61 E-value=56 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.683 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020734 246 ALIVLGLFTVIGIFYSVLV 264 (322)
Q Consensus 246 ~~~~~~~~~~~g~~~~~~~ 264 (322)
+++..++ +++|++.||++
T Consensus 7 a~i~~~l-vlvGla~Gf~L 24 (31)
T PF08041_consen 7 AVICFGL-VLVGLALGFVL 24 (31)
T ss_dssp HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHh
Confidence 3333334 78999999976
No 81
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.36 E-value=31 Score=29.17 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020734 250 LGLFTVIGIFYSVLV 264 (322)
Q Consensus 250 ~~~~~~~g~~~~~~~ 264 (322)
+.++||||..|||..
T Consensus 32 lti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 32 LTIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345699999999864
No 82
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=37.94 E-value=28 Score=27.72 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 020734 256 IGIFYSVLVATMVG 269 (322)
Q Consensus 256 ~g~~~~~~~~~~~~ 269 (322)
+||+||+.+..++.
T Consensus 47 iGIlYG~v~Glii~ 60 (70)
T PF04210_consen 47 IGILYGLVIGLIIF 60 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 68888888777653
No 83
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=37.81 E-value=39 Score=30.80 Aligned_cols=21 Identities=5% Similarity=0.379 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020734 247 LIVLGLFTVIGIFYSVLVATM 267 (322)
Q Consensus 247 ~~~~~~~~~~g~~~~~~~~~~ 267 (322)
++.+++++++|+++|++++.-
T Consensus 5 ~~~~~~~~~lg~~~g~~l~~a 25 (191)
T PRK05113 5 WIAVAALSLLALVFGAILGFA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445588999999998853
No 84
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.65 E-value=17 Score=33.24 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhh
Q 020734 267 MVGQRIWQRHYH 278 (322)
Q Consensus 267 ~~~~ri~~r~~~ 278 (322)
-+|||||||-|-
T Consensus 81 giGQkiWq~Df~ 92 (197)
T KOG4414|consen 81 GIGQKIWQHDFA 92 (197)
T ss_pred hhhHHHHhcccc
Confidence 369999999874
No 85
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=37.49 E-value=13 Score=36.12 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 020734 240 PLLFIMALIVLGLFTVIGIFYS 261 (322)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~ 261 (322)
-+.++++++++++|+++|.+||
T Consensus 235 ai~v~vv~i~va~~~vL~y~Y~ 256 (272)
T PF12216_consen 235 AIVVIVVLIFVAAVIVLAYLYG 256 (272)
T ss_pred EEEeeehhHHHHHHHHhhhhcc
Confidence 3456677777888889999999
No 86
>TIGR03153 cytochr_NrfH cytochrome c nitrate reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrate reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones.
Probab=37.18 E-value=20 Score=30.92 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=7.5
Q ss_pred eehhHHHHHHHhhhh
Q 020734 154 ICGALLFFALLGLSG 168 (322)
Q Consensus 154 i~GaliFfvilgf~g 168 (322)
++|+++.++++.|.|
T Consensus 3 ~~g~~~g~~~~~~~~ 17 (135)
T TIGR03153 3 IVGVALGVGAYAFYY 17 (135)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345555554555444
No 87
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=36.88 E-value=34 Score=30.23 Aligned_cols=18 Identities=6% Similarity=0.327 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020734 250 LGLFTVIGIFYSVLVATM 267 (322)
Q Consensus 250 ~~~~~~~g~~~~~~~~~~ 267 (322)
+++++++|+++|+++|..
T Consensus 6 ~~~~~~~g~~~~~~l~~~ 23 (165)
T TIGR01944 6 VAALSALGLALGAILGYA 23 (165)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334488999999998853
No 88
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=36.77 E-value=72 Score=35.84 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 020734 254 TVIGIFYSVLVATMVGQRIWQR 275 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r 275 (322)
.++++++|+|.|.|..|++-.|
T Consensus 162 l~i~~ligv~~~fvtnk~v~~~ 183 (865)
T KOG4331|consen 162 LAIELLIGVFRAFVTNKPVMLR 183 (865)
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3456667777777777776544
No 89
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.12 E-value=30 Score=35.20 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred cCcccceeEEE-ee---hhHHHHHHHhhhhheeeecc
Q 020734 143 WGFDSELSFYY-IC---GALLFFALLGLSGCFITCYD 175 (322)
Q Consensus 143 rGF~s~v~~yy-i~---GaliFfvilgf~g~fl~c~~ 175 (322)
|+.+...++|| ++ |.+.||..+++++++||+--
T Consensus 210 WP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~ 246 (372)
T KOG2927|consen 210 WPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGIT 246 (372)
T ss_pred CcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHH
Confidence 55555556664 44 35667778889999888543
No 90
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=35.82 E-value=29 Score=31.23 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHH--------HHHHHHHhhhhhhhhh
Q 020734 254 TVIGIFYSVLVA--------TMVGQRIWQRHYHILA 281 (322)
Q Consensus 254 ~~~g~~~~~~~~--------~~~~~ri~~r~~~il~ 281 (322)
+++||.||+|-| .++|--=+++|.-.|.
T Consensus 110 gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 110 GLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 789999999976 3455555555554443
No 91
>PLN02195 cellulose synthase A
Probab=34.95 E-value=31 Score=39.17 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=35.4
Q ss_pred CCCeeEEeccC-----CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET-----DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~-----e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+..+|+||-+. ++++.+.-=.|. --|=+.|.+.=+++- +..|++||++|.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~---~pvCrpCyeyer~eg----~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS---YPLCKACLEYEIKEG----RKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC---CccccchhhhhhhcC----CccCCccCCccc
Confidence 45799999762 344555433453 458899997666554 479999999999
No 92
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=34.92 E-value=2.1e+02 Score=25.07 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhhhhhccccccceeecCCCCCCCCCCCCCCCChHHHHHhh
Q 020734 264 VATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPAPLPPEHVQQLK 317 (322)
Q Consensus 264 ~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (322)
++.++.-..+.+|-- -..+--|--+||+|-... ..|-|.|||-+....
T Consensus 62 ~~~~~y~~~~~~s~~----~~~~~syfyQDLNsVeik--~~~~PIDP~VIaAIH 109 (122)
T PF04530_consen 62 FSILVYLYSSGGSNV----DPVKGSYFYQDLNSVEIK--LAPVPIDPEVIAAIH 109 (122)
T ss_pred HHHHHHheeccCccc----CccccchheeeccceEEe--cCCCCCCHHHHHHHH
Confidence 444554455555510 122334556888885432 456889999776543
No 93
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.67 E-value=31 Score=39.61 Aligned_cols=50 Identities=32% Similarity=0.586 Sum_probs=35.1
Q ss_pred CCCeeEEeccC-----CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET-----DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~-----e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+..+|+||-++ ++++++.-=.|. --|=+.|.+.=+++- +..|++||++|.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~---FPVCrpCYEYEr~eG----~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA---FPVCRPCYEYERKDG----NQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC---CccccchhhhhhhcC----CccCCccCCchh
Confidence 45699999763 344555433453 448899997666553 479999999998
No 94
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=34.65 E-value=59 Score=22.66 Aligned_cols=12 Identities=42% Similarity=0.293 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH
Q 020734 254 TVIGIFYSVLVA 265 (322)
Q Consensus 254 ~~~g~~~~~~~~ 265 (322)
.+.|++++.+.|
T Consensus 24 tvg~v~~~al~a 35 (35)
T PF13253_consen 24 TVGSVVASALSA 35 (35)
T ss_pred HHHHHHHHHHhC
Confidence 777888877653
No 95
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.45 E-value=79 Score=25.29 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 020734 251 GLFTVIGIFYSVLVATMVGQRIWQR 275 (322)
Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~ri~~r 275 (322)
+++.++.++.|++..+.+.+|++++
T Consensus 7 il~ivl~ll~G~~~G~fiark~~~k 31 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777776666666543
No 96
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=34.18 E-value=37 Score=24.62 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 020734 253 FTVIGIFYSVLVATMVGQRIWQRH 276 (322)
Q Consensus 253 ~~~~g~~~~~~~~~~~~~ri~~r~ 276 (322)
|.|||++-=-++| +..+|=||-+
T Consensus 14 F~lVglv~i~iva-~~iYRKw~aR 36 (43)
T PF08114_consen 14 FCLVGLVGIGIVA-LFIYRKWQAR 36 (43)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444444323334 4567778754
No 97
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.13 E-value=58 Score=30.76 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020734 240 PLLFIMALIVLGLFTVIGIFYSVLVATMVGQR 271 (322)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r 271 (322)
|...=+++++|++++|+|+-|-|.++.+.-++
T Consensus 20 pl~~rlv~~lL~~~~V~~lGy~f~~s~k~eel 51 (211)
T COG3167 20 PLAPRLVFCLLAVAAVLGLGYAFYLSGKLEEL 51 (211)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 56666788888889999999999999887654
No 98
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=33.18 E-value=39 Score=32.91 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHhhhhhhhhhhccccccceeecCCCC
Q 020734 254 TVIGIFYSVLVATMV----GQRIWQRHYHILAKRMLTKEYVVEDVDGE 297 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~----~~ri~~r~~~il~k~~~tk~~~~~~~~~~ 297 (322)
|+||-+||+++|-++ .-|+=+|.-.-...+++.+|=++.=.+|+
T Consensus 205 Alv~TlyGv~lAn~i~~PiA~kl~~~~~~e~~~~~~i~egi~ai~~G~ 252 (282)
T TIGR03818 205 ALVGTFLGILLAYGFVGPLAAALEQRVEEEIKFLECVKVTLVASLNGY 252 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 778889999998884 46776676666777777777777777887
No 99
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.
Probab=32.99 E-value=23 Score=36.06 Aligned_cols=9 Identities=67% Similarity=1.531 Sum_probs=6.7
Q ss_pred ccccCCCCC
Q 020734 198 ICADCHLPG 206 (322)
Q Consensus 198 ~~~~~~~~~ 206 (322)
.|.|||.|-
T Consensus 75 ~C~DCHvP~ 83 (386)
T TIGR02162 75 ECADCHVPH 83 (386)
T ss_pred cCcccCCCC
Confidence 488888875
No 100
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=32.82 E-value=77 Score=34.89 Aligned_cols=52 Identities=25% Similarity=0.416 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-ccccceeecCCCCCCC
Q 020734 243 FIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRM-LTKEYVVEDVDGEMTG 300 (322)
Q Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~-~tk~~~~~~~~~~~~~ 300 (322)
.|+.+|++++|+||- +++++|+- | |||--.=-+.|+ .+|--|+-|++|....
T Consensus 391 ~~~~~~f~~if~iva----~ii~~~L~-R-~rr~~~ka~s~~~n~k~~v~lti~gnt~~ 443 (807)
T KOG1094|consen 391 AILIIIFVAIFLIVA----LIIALMLW-R-WRRLLSKASSRVLNEKLTVHLTVPGNTIL 443 (807)
T ss_pred eehHHHHHHHHHHHH----HHHHHHHH-H-HHHHHhhhccCCcccceeEEEeccCCcee
Confidence 366777888877764 35666654 4 776554444444 4677788899887543
No 101
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=32.53 E-value=25 Score=28.90 Aligned_cols=31 Identities=42% Similarity=1.259 Sum_probs=22.4
Q ss_pred hhccccCCC--CccccCCCCCCcc--cccCCcccc
Q 020734 188 ELCLCCCQP--GICADCHLPGTLC--MWTDCTTCF 218 (322)
Q Consensus 188 ~~~~~c~~~--~~~~~~~~~~~~~--~~~~~~~~~ 218 (322)
+.|+-|=.+ +.|.||..||..| .|+.|..+|
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~F 56 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNF 56 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHH
Confidence 556666543 3478999999988 577777766
No 102
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=32.37 E-value=97 Score=26.84 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=28.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020734 236 EAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAK 282 (322)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il~k 282 (322)
++|.|.-|++.|+-.++|--||++ |+++-||++...-.++
T Consensus 5 ~~~~~a~Ia~mVlGFi~fWPlGla-------~Lay~iw~~rm~~~~~ 44 (115)
T PF11014_consen 5 PRWKPAWIAAMVLGFIVFWPLGLA-------LLAYMIWGKRMFGFKR 44 (115)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhc
Confidence 567787788888778888888876 4566777766554333
No 103
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=32.21 E-value=94 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 020734 254 TVIGIFYSVLVATMVGQRIWQRHYH 278 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r~~~ 278 (322)
.++-++|||+..-..=.||=.|+=|
T Consensus 12 ~~~~~~~~~~~lh~lP~~iA~kr~H 36 (78)
T PF11742_consen 12 VVIVLIYGFWKLHDLPGKIAHKRNH 36 (78)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcCC
Confidence 5556788888777777776555433
No 104
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=31.93 E-value=39 Score=30.52 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=13.6
Q ss_pred ccCCCCccccchHHHHHHHHHHHHHHHHHHHH
Q 020734 229 GCLSGAGEAGLPLLFIMALIVLGLFTVIGIFY 260 (322)
Q Consensus 229 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 260 (322)
++++|..=|| +++++ |.++++|.|++.
T Consensus 56 ~~lsgtAIaG----IVfgi-Vfimgvva~i~i 82 (155)
T PF10873_consen 56 DVLSGTAIAG----IVFGI-VFIMGVVAGIAI 82 (155)
T ss_pred cccccceeee----eehhh-HHHHHHHHHHHH
Confidence 3466666667 33333 333445555543
No 105
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=31.07 E-value=2e+02 Score=24.54 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Q 020734 236 EAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKE 288 (322)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~~tk~ 288 (322)
+.|.---|.++||+++ |.-++|+|..+==.+|.|+++=-.-|-|...
T Consensus 12 ~~g~sW~~LVGVv~~a------l~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTA------LVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred CCCcccHhHHHHHHHH------HHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 3344444444444333 4568899998888999998887777777655
No 106
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.97 E-value=43 Score=24.93 Aligned_cols=7 Identities=14% Similarity=-0.140 Sum_probs=5.4
Q ss_pred hhhhhcc
Q 020734 278 HILAKRM 284 (322)
Q Consensus 278 ~il~k~~ 284 (322)
|++||+.
T Consensus 22 ~~~K~yg 28 (50)
T PF12606_consen 22 TTLKAYG 28 (50)
T ss_pred HHhhccc
Confidence 8888864
No 107
>PRK09110 flagellar motor protein MotA; Validated
Probab=30.86 E-value=45 Score=32.54 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHhhhhhhhhhhccccccceeecCCCC
Q 020734 254 TVIGIFYSVLVATMVG----QRIWQRHYHILAKRMLTKEYVVEDVDGE 297 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~----~ri~~r~~~il~k~~~tk~~~~~~~~~~ 297 (322)
|++|-+||++.|-++. .|+=+|.=.-...|+..+|=++-=.+|+
T Consensus 205 Alv~TlyGi~lAn~i~~PiA~kl~~~~~~e~~~~~~i~egi~ai~~G~ 252 (283)
T PRK09110 205 ALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQCIKVTLLASLNGY 252 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7788899998888766 7777777777777777777777667777
No 108
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=30.70 E-value=37 Score=23.44 Aligned_cols=40 Identities=25% Similarity=0.749 Sum_probs=29.0
Q ss_pred eEEeccC---CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCC
Q 020734 34 CRICLET---DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKA 83 (322)
Q Consensus 34 CRIC~e~---e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~ 83 (322)
|-||++. +..+++.+|. ..+.++|+.+.. + +...|++|++
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~---~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--G---KSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--C---CCCCCcCCCC
Confidence 6788863 3457888873 568889998887 2 2478999974
No 109
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=30.64 E-value=77 Score=25.01 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.0
Q ss_pred hccccccceeecCCC
Q 020734 282 KRMLTKEYVVEDVDG 296 (322)
Q Consensus 282 k~~~tk~~~~~~~~~ 296 (322)
|.+-|++|-++|.++
T Consensus 39 q~~At~~Y~~~d~~~ 53 (66)
T PF13179_consen 39 QEQATNPYKLKDANN 53 (66)
T ss_pred HHHhcCCccccChHH
Confidence 467789999998865
No 110
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=29.82 E-value=1.2e+02 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 020734 242 LFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRM 284 (322)
Q Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~ 284 (322)
.|-.++.=.++||.+-++. |++-.++|-|||-..- +|+-||
T Consensus 8 vfdyal~K~~~FA~L~i~~-FiILLIi~~~IW~~~r-~~r~~M 48 (121)
T PF10669_consen 8 VFDYALTKIMFFAFLFIVV-FIILLIITKSIWHDSR-QVRIRM 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHH-HHHHHH
Confidence 3444444445555554443 5666788999996542 444443
No 111
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.69 E-value=1.8e+02 Score=21.31 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 020734 239 LPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYH 278 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~ 278 (322)
.|+.+++++.+++= +++|.++++....=.-.|+.+..-.
T Consensus 18 ~pl~l~il~~f~~G-~llg~l~~~~~~~~~r~~~~~~~k~ 56 (68)
T PF06305_consen 18 LPLGLLILIAFLLG-ALLGWLLSLPSRLRLRRRIRRLRKE 56 (68)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46655555555444 7888888888887777777655443
No 112
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=29.57 E-value=97 Score=31.98 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020734 245 MALIVLGLFTVIGIFYSV 262 (322)
Q Consensus 245 ~~~~~~~~~~~~g~~~~~ 262 (322)
..++++.+|+..|+++|+
T Consensus 84 ~sLiiltL~~~aaIi~~f 101 (418)
T cd07912 84 WSLVIATLLCCAAIGVGL 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444555555544
No 113
>PRK12482 flagellar motor protein MotA; Provisional
Probab=29.40 E-value=44 Score=32.78 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHhhhhhhhhhhccccccceeecCCCC
Q 020734 254 TVIGIFYSVLVATMV----GQRIWQRHYHILAKRMLTKEYVVEDVDGE 297 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~----~~ri~~r~~~il~k~~~tk~~~~~~~~~~ 297 (322)
|+||-|||+++|-++ ..|+=+|.=+-...|++.||=++-=.+|+
T Consensus 205 ALvtTfYGv~lAn~i~~PiA~kL~~~~~~e~~~~~~i~~gi~a~~~G~ 252 (287)
T PRK12482 205 ALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLECVRTVLVAHVAGK 252 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777888888888775 46777777777888888888888777887
No 114
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=29.16 E-value=1.3e+02 Score=25.43 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.6
Q ss_pred HHHHHHHhhhh
Q 020734 266 TMVGQRIWQRH 276 (322)
Q Consensus 266 ~~~~~ri~~r~ 276 (322)
+.+.-|.+.|+
T Consensus 110 ~~~~~~~~~~~ 120 (135)
T PF04246_consen 110 GFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHhh
Confidence 33344444443
No 115
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=28.52 E-value=55 Score=33.62 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020734 253 FTVIGIFYSVLVATM 267 (322)
Q Consensus 253 ~~~~g~~~~~~~~~~ 267 (322)
+.++|.+.||++||.
T Consensus 313 lL~ig~~~gFv~Att 327 (387)
T PF12751_consen 313 LLVIGFAIGFVFATT 327 (387)
T ss_pred HHHHHHHHHhhhhcC
Confidence 467899999999974
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=28.19 E-value=29 Score=25.22 Aligned_cols=37 Identities=22% Similarity=0.497 Sum_probs=16.3
Q ss_pred cccccccCCCCcccchhH--HHHHHHHhcCcCccccccCCCc
Q 020734 45 FIAPCKCKGTSKYVHREC--LDHWRAVREGFAFAHCTTCKAP 84 (322)
Q Consensus 45 LIsPC~CkGS~kyVH~~C--L~~Wi~~s~~~~~~~CElCK~~ 84 (322)
+..|.+=+ .-.|.+| |+.|++.....+.+.|++|+.+
T Consensus 12 i~~P~Rg~---~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 12 IRIPVRGK---NCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp -SSEEEET---T--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred EEeCccCC---cCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 44554432 4678888 4568877654456899999864
No 117
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=27.97 E-value=35 Score=22.39 Aligned_cols=14 Identities=43% Similarity=1.229 Sum_probs=6.1
Q ss_pred cccCCCCCCcccccC
Q 020734 199 CADCHLPGTLCMWTD 213 (322)
Q Consensus 199 ~~~~~~~~~~~~~~~ 213 (322)
|+-|.+-++ |.|+.
T Consensus 6 Camc~~~~g-C~WGQ 19 (27)
T PF08098_consen 6 CAMCKYTGG-CPWGQ 19 (27)
T ss_dssp S----TTTT--SSS-
T ss_pred cccceeecC-Ccccc
Confidence 777887776 88874
No 118
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.28 E-value=70 Score=29.06 Aligned_cols=45 Identities=31% Similarity=0.428 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhc
Q 020734 238 GLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIW-QRHYHILAKR 283 (322)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~-~r~~~il~k~ 283 (322)
..|.+-- +++|++.|..+.++|=++=+.=...|.= .|.|-||+-+
T Consensus 90 d~~~l~R-~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 90 DSPMLKR-ALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred Cccchhh-hHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCC
Confidence 4455433 3344444455555554432211222111 1566666655
No 119
>PF14967 FAM70: FAM70 protein
Probab=27.21 E-value=1.2e+02 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.582 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020734 246 ALIVLGLFTVIGIFYSVLVATMVGQ 270 (322)
Q Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~ 270 (322)
.+-...|.-|+|+|.|++-|.++|-
T Consensus 197 LLWastvLNilgLfLGIiTAAvLGa 221 (327)
T PF14967_consen 197 LLWASTVLNILGLFLGIITAAVLGA 221 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455589999999999988884
No 120
>PF15050 SCIMP: SCIMP protein
Probab=27.03 E-value=1.1e+02 Score=26.97 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhhhh---hhhccccccceeecCCCCCCCCCCCCCCCChH
Q 020734 254 TVIGIFYSVLVATMVGQRIWQ-RHYHI---LAKRMLTKEYVVEDVDGEMTGSDWSPAPLPPE 311 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~-r~~~i---l~k~~~tk~~~~~~~~~~~~~~~~~~~~~~~~ 311 (322)
.+|++..|+|+--++-+..=| +..+| |+.|-...|-.-|++-.+. ...-|||||.
T Consensus 17 I~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYENv~n~~---~~~LPpLPPR 75 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYENVLNQS---PVQLPPLPPR 75 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHHhhcCC---cCCCCCCCCC
Confidence 345666666665444322222 22344 3333344455556664442 2344677763
No 121
>PRK07118 ferredoxin; Validated
Probab=26.97 E-value=71 Score=30.88 Aligned_cols=24 Identities=13% Similarity=0.465 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020734 250 LGLFTVIGIFYSVLVATMVGQRIWQRHYHI 279 (322)
Q Consensus 250 ~~~~~~~g~~~~~~~~~~~~~ri~~r~~~i 279 (322)
+++++++|+++|++++.- +|.++|
T Consensus 8 ~~~~~~~g~~~g~~l~~a------~~~f~v 31 (280)
T PRK07118 8 VLSLGALGLVFGILLAFA------SKKFAV 31 (280)
T ss_pred HHHHHHHHHHHHHHHHHH------eeeeec
Confidence 334488999999998854 456665
No 122
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.94 E-value=3.3e+02 Score=26.93 Aligned_cols=19 Identities=26% Similarity=0.712 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020734 243 FIMALIVLGLFTVIGIFYS 261 (322)
Q Consensus 243 ~~~~~~~~~~~~~~g~~~~ 261 (322)
++++-+++++.+++|-.|.
T Consensus 204 li~~Pl~li~la~~GY~yT 222 (340)
T PF12794_consen 204 LILAPLALIVLALLGYYYT 222 (340)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3444456666688887775
No 123
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=26.54 E-value=60 Score=28.35 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeecCCCCCCCCCCCCC
Q 020734 254 TVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPA 306 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~~~~~~~~~~ 306 (322)
|++|-.-|.|--++..--+-||+-.=-..+.|-.||-..|+.-| ||+-|
T Consensus 78 aLIgTMCgILgTiIfahcqkq~dSnkTvpqql~dyysl~~~~te----dytqp 126 (130)
T PF02960_consen 78 ALIGTMCGILGTIIFAHCQKQRDSNKTVPQQLRDYYSLHDLCTE----DYTQP 126 (130)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccchHHHHhhhhHhHhhhh----ccCCC
Confidence 77788888776666666677888777777788889999999877 67765
No 124
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=26.51 E-value=92 Score=20.65 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020734 244 IMALIVLGLFTVIGIFYSV 262 (322)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~~ 262 (322)
+...+++.++++-|+++.+
T Consensus 14 ~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 14 LIAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455566666888888754
No 125
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=26.23 E-value=85 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020734 241 LLFIMALIVLGLFTVIGIFYS 261 (322)
Q Consensus 241 ~~~~~~~~~~~~~~~~g~~~~ 261 (322)
|.++++.|.+.+|++-|+||=
T Consensus 51 v~l~l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 51 VALVLAAILVLLLAFYAFFYL 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666676666663
No 126
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=25.92 E-value=87 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020734 249 VLGLFTVIGIFYSVLVATMVGQRIWQRHYHIL 280 (322)
Q Consensus 249 ~~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il 280 (322)
.-++|+.+|++.|.++|-|+.-++.++-+.++
T Consensus 79 ~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~ 110 (356)
T COG4956 79 TTILFGTIGLIIGLLIAVLLSSPLFLLPIPFI 110 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhCCccHH
Confidence 34567888888888888888887777766543
No 127
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=25.89 E-value=1.3e+02 Score=28.24 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020734 239 LPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIW 273 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~ 273 (322)
..++..-+.++++++.|.|++|-+++ |.++|-+|
T Consensus 5 ~~~l~~al~~~l~~~vl~G~~YPl~v-tgiaq~~F 38 (193)
T PRK13997 5 QSILSPIIRITFTFLVLCGLVYPLIV-TGIAQAVM 38 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 34565666667777788899998755 67788876
No 128
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=25.78 E-value=1e+02 Score=28.18 Aligned_cols=28 Identities=7% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 020734 251 GLFTVIGIFYSVLVATMVGQRIWQRHYH 278 (322)
Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~ri~~r~~~ 278 (322)
++.+|+|++.|++++.++..++.+++..
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~~ 30 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKLE 30 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999988888877777653
No 129
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=25.72 E-value=20 Score=36.06 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020734 250 LGLFTVIGIFYSVLVATMVGQRIWQRHYHILAK 282 (322)
Q Consensus 250 ~~~~~~~g~~~~~~~~~~~~~ri~~r~~~il~k 282 (322)
++++.++|++ ++++|+++-+|. ||+-+.-.|
T Consensus 203 Iv~~cvaG~a-Aliva~~cW~Rl-qr~~rlaqk 233 (341)
T PF06809_consen 203 IVVCCVAGAA-ALIVAGYCWYRL-QREIRLAQK 233 (341)
T ss_pred hHHHHHHHHH-HHHHhhheEEEe-ccccccccc
Confidence 3334556665 999999999997 566553333
No 130
>PLN02400 cellulose synthase
Probab=25.35 E-value=40 Score=38.78 Aligned_cols=50 Identities=30% Similarity=0.567 Sum_probs=34.2
Q ss_pred CCCeeEEeccC-----CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET-----DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~-----e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+..+|+||-++ ++++++.-=.|. --|=+.|.+.=+++- +..|++||++|.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa---FPVCRpCYEYERkeG----nq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA---FPVCRPCYEYERKDG----TQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC---CccccchhheecccC----CccCcccCCccc
Confidence 44699999763 344554433353 448899986655543 479999999998
No 131
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=25.25 E-value=21 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=21.5
Q ss_pred CCCeeEEeccC--CCCccccccccCCCCcccchhHHHH
Q 020734 30 EQIQCRICLET--DGRDFIAPCKCKGTSKYVHRECLDH 65 (322)
Q Consensus 30 e~~~CRIC~e~--e~~~LIsPC~CkGS~kyVH~~CL~~ 65 (322)
+...|.+|... ...-.+.||. ..+|..|++|
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 44679999864 3334567764 5799999764
No 132
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.21 E-value=1.6e+02 Score=26.62 Aligned_cols=6 Identities=67% Similarity=0.645 Sum_probs=2.9
Q ss_pred hhhhcc
Q 020734 279 ILAKRM 284 (322)
Q Consensus 279 il~k~~ 284 (322)
-++||.
T Consensus 127 kl~~~~ 132 (150)
T COG3086 127 KLAKRT 132 (150)
T ss_pred Hhhhcc
Confidence 455543
No 133
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=25.15 E-value=2e+02 Score=23.14 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020734 240 PLLFIMALIVLGLFTVIGIFYSV 262 (322)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~ 262 (322)
+++-.+++++.+++++.+++-|+
T Consensus 15 ~~~Y~l~li~i~l~~~~~~~~~~ 37 (90)
T PF14110_consen 15 KVLYWLGLILIVLSGLSGIFSGF 37 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 134
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=24.97 E-value=46 Score=24.41 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHhhhhhhhhhhc
Q 020734 251 GLFTVIGIFYSVLV------ATMVGQRIWQRHYHILAKR 283 (322)
Q Consensus 251 ~~~~~~g~~~~~~~------~~~~~~ri~~r~~~il~k~ 283 (322)
+++.++|+..|.-+ .-..-..-||.=++..+||
T Consensus 9 ~~~l~iGlmIGY~viG~G~p~~vf~~~tW~hi~d~~~gk 47 (47)
T PF11772_consen 9 ILALAIGLMIGYGVIGDGNPFDVFSPDTWQHIIDFFTGK 47 (47)
T ss_pred HHHHHHHHHeeeeeeCCCCHHHhCCHHHHHHHHHHHcCC
Confidence 33356676655431 2344456677666666554
No 135
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=24.66 E-value=1.6e+02 Score=26.50 Aligned_cols=7 Identities=0% Similarity=0.325 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 020734 257 GIFYSVL 263 (322)
Q Consensus 257 g~~~~~~ 263 (322)
+++||+.
T Consensus 36 ~~l~~~~ 42 (199)
T PF10112_consen 36 SLLIGAV 42 (199)
T ss_pred HHHHHHH
Confidence 4444443
No 136
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.59 E-value=85 Score=32.33 Aligned_cols=55 Identities=22% Similarity=0.447 Sum_probs=33.8
Q ss_pred CCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 27 GPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
..++...|-||-++-.-.-+.||. |+.|=.==+..+.-.++..|.+|+++.....
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~--------H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCG--------HQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccceeEEecCCceEEEeccCC--------chHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 345668999997654334567875 5555433333322123578999999876543
No 137
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=24.46 E-value=1.3e+02 Score=20.60 Aligned_cols=11 Identities=18% Similarity=0.307 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q 020734 254 TVIGIFYSVLV 264 (322)
Q Consensus 254 ~~~g~~~~~~~ 264 (322)
+++|++.||++
T Consensus 16 vlvGlalGf~L 26 (32)
T PRK11876 16 IPVGLAGGALL 26 (32)
T ss_pred HHHHHHHHHHh
Confidence 67899999875
No 138
>PHA02909 hypothetical protein; Provisional
Probab=24.34 E-value=1.6e+02 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020734 243 FIMALIVLGLFTVIGIFYSVLVAT 266 (322)
Q Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~ 266 (322)
+.+++|++.+|+|+.-.|-.++-+
T Consensus 39 ilfviiflsmftilacsyvyiaii 62 (72)
T PHA02909 39 ILFVIIFLSMFTILACSYVYIAII 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778899999998888655443
No 139
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.33 E-value=66 Score=33.54 Aligned_cols=50 Identities=18% Similarity=0.634 Sum_probs=35.1
Q ss_pred CCCeeEEeccC---C-CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET---D-GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~---e-~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
.+.+|-||+++ . +..+++| .|. .-.-.+|.++|+- +.. ...|++|+.+-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~-k~~--~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLG-KKT--KMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHh-hhh--hhhCcccCChhH
Confidence 45789999974 2 3456666 333 4467899999995 432 578999998644
No 140
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=24.32 E-value=1.7e+02 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.467 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020734 255 VIGIFYSVLVATMVGQRIWQRHYHILAK 282 (322)
Q Consensus 255 ~~g~~~~~~~~~~~~~ri~~r~~~il~k 282 (322)
++|++.=.+.-+-.|+|+..|+|+=-.|
T Consensus 177 ~lGi~~q~~tllPi~~k~~~~~~~~~~~ 204 (210)
T PRK01100 177 MVGSLFQVISINPITYKLLNRRYKNYEK 204 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 4555555566677899999999985544
No 141
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.30 E-value=1.2e+02 Score=26.27 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 020734 244 IMALIVLGLFTVIGI 258 (322)
Q Consensus 244 ~~~~~~~~~~~~~g~ 258 (322)
|.++|+-++++|+|+
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 333333344444443
No 142
>PHA02047 phage lambda Rz1-like protein
Probab=24.25 E-value=1.2e+02 Score=25.69 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=19.3
Q ss_pred cceeecCCCCCC-CCCCCCCCCChHHHHHh
Q 020734 288 EYVVEDVDGEMT-GSDWSPAPLPPEHVQQL 316 (322)
Q Consensus 288 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 316 (322)
|..-.|++++.- .++|.--|.||.-+..|
T Consensus 65 e~~t~Ei~~aL~~n~~WaD~PVPpaV~~~L 94 (101)
T PHA02047 65 NTQRQEVDRALDQNRPWADRPVPPAVVDSL 94 (101)
T ss_pred HHHHHHHHHHHHhCCCcccCCCChHHHHHH
Confidence 333445555433 58899999999877655
No 143
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=24.18 E-value=92 Score=27.31 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020734 239 LPLLFIMALIVLGLFTVIGIFYSVLVAT 266 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 266 (322)
-|+--+-..+||++|..+.|..|+|++.
T Consensus 46 ~P~k~i~lavvL~~fg~Lli~lg~fl~~ 73 (124)
T KOG4753|consen 46 HPVKEIALAVVLLVFGLLLIGLGFFLAG 73 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 4777777888889999999999998874
No 144
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=23.85 E-value=78 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhhhhhhhh--hhccc
Q 020734 250 LGLFTVIGIFYSVLVATMV--GQRIWQRHYHIL--AKRML 285 (322)
Q Consensus 250 ~~~~~~~g~~~~~~~~~~~--~~ri~~r~~~il--~k~~~ 285 (322)
++=|++..++-|||+|... .-+|..+|||++ ++||-
T Consensus 88 aIPy~L~Ala~GFlv~~~~~p~~~~i~~~~~~f~l~r~~r 127 (141)
T PRK13743 88 VIPYTLWALAAGFLVAGVRNPLCELINGGIRIFRLKRRMR 127 (141)
T ss_pred HHHHHHHHHHhchhhhhhhhHHHHHHhcceeeeehhcccc
Confidence 3445777788899998654 789999999973 44444
No 145
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=23.78 E-value=68 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccc-eeecC
Q 020734 263 LVATMVGQRIWQRHYHILAKRMLTKEY-VVEDV 294 (322)
Q Consensus 263 ~~~~~~~~ri~~r~~~il~k~~~tk~~-~~~~~ 294 (322)
.+++.+||=.|||+-+=.+-..||.|+ .||+-
T Consensus 115 a~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vEng 147 (202)
T PF06365_consen 115 AILLGAGYCCHQRRSWSKKGQRLGEELYTVENG 147 (202)
T ss_pred HHHHHHHHHhhhhccCCcchhhhccCceecccC
Confidence 345567788999999888888899885 45544
No 146
>PF03730 Ku_C: Ku70/Ku80 C-terminal arm; InterPro: IPR005160 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the C-terminal arm. This alpha helical region embraces the beta-barrel domain IPR006164 from INTERPRO of the opposite subunit [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B 1RW2_A 3RZ9_B 3RZX_B.
Probab=23.60 E-value=32 Score=27.56 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.3
Q ss_pred hhhhhhhhhhccccccce
Q 020734 273 WQRHYHILAKRMLTKEYV 290 (322)
Q Consensus 273 ~~r~~~il~k~~~tk~~~ 290 (322)
.||||.+|.-+-|..+-.
T Consensus 15 LQ~hY~~L~a~AL~~d~p 32 (96)
T PF03730_consen 15 LQRHYKCLQALALDEDEP 32 (96)
T ss_dssp HHHHHHHHHHHHCTTTS-
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 699999999988876533
No 147
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.22 E-value=61 Score=26.89 Aligned_cols=24 Identities=38% Similarity=0.904 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------hhhhhh
Q 020734 254 TVIGIFYSVLVATMVGQRI-----------WQRHYH 278 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri-----------~~r~~~ 278 (322)
||+|||.|-++ -++|-|| |-|||+
T Consensus 46 al~~IFiGAll-WL~GARigGrE~VaDRYwWvkh~D 80 (89)
T PF10762_consen 46 ALFSIFIGALL-WLVGARIGGREKVADRYWWVKHFD 80 (89)
T ss_pred HHHHHHHHHHH-HHhcccccCcchhhhhHHHHHhhh
Confidence 56777777665 3566666 677775
No 148
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=23.18 E-value=55 Score=21.53 Aligned_cols=18 Identities=17% Similarity=0.615 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020734 243 FIMALIVLGLFTVIGIFY 260 (322)
Q Consensus 243 ~~~~~~~~~~~~~~g~~~ 260 (322)
|+++++..++..|+|..|
T Consensus 8 f~livVLFILLIIiga~~ 25 (26)
T TIGR01732 8 FALIVVLFILLVIVGAAF 25 (26)
T ss_pred hHHHHHHHHHHHHhheee
Confidence 445555555557777654
No 149
>PF14802 TMEM192: TMEM192 family
Probab=23.02 E-value=1.9e+02 Score=27.59 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccc
Q 020734 262 VLVATMVGQRIWQRHYHILAKRML 285 (322)
Q Consensus 262 ~~~~~~~~~ri~~r~~~il~k~~~ 285 (322)
+.+.|++.+|.+++|-+.+..+.-
T Consensus 68 lW~lt~l~d~y~k~~H~klr~~GY 91 (236)
T PF14802_consen 68 LWLLTYLFDRYIKHQHQKLRLQGY 91 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 457899999999999998887654
No 150
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=23.02 E-value=83 Score=30.75 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeec-CCCC
Q 020734 254 TVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVED-VDGE 297 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~-~~~~ 297 (322)
+=-++.-.+++-+++.---+-|-.-.-..+||.||||+.- +||-
T Consensus 154 ~gpsl~namfA~~LAllPrfirsiY~avh~EleKeYViaarLdGa 198 (296)
T COG4171 154 AGPSLSNAMFAVWLALLPRFIRSIYSAVHDELEKEYVIAARLDGA 198 (296)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 3344555555555555544555555667789999999875 4886
No 151
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=22.84 E-value=1.2e+02 Score=25.61 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 020734 231 LSGAGEAGLPLLFIMALIVLGLFTVIGIFYSV 262 (322)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 262 (322)
.|-+...+.-|+|.+.++.+.+ |+++.+|..
T Consensus 54 v~i~~~s~asV~FY~sL~aV~v-all~~aY~a 84 (98)
T PF05702_consen 54 VPIDFPSAASVLFYVSLLAVCV-ALLAYAYRA 84 (98)
T ss_pred eecCCccHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445566778999999999998 999988874
No 152
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.64 E-value=1.8e+02 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020734 242 LFIMALIVLGLFTVIGIFY 260 (322)
Q Consensus 242 ~~~~~~~~~~~~~~~g~~~ 260 (322)
+++.++.|++++.+++.|+
T Consensus 8 ~~~~~i~flil~~ll~~~l 26 (140)
T PRK07353 8 LPLMAVQFVLLTFILNALF 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666656665543
No 153
>PF13994 PgaD: PgaD-like protein
Probab=22.46 E-value=81 Score=27.17 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhhhhhhccccccceeecCCCCCCCCCCCCCCCChHHHHHhhhcc
Q 020734 267 MVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPAPLPPEHVQQLKSLG 320 (322)
Q Consensus 267 ~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (322)
++=.+..+|+||...||-....+-.+|+-.. =.+++|.+||++.=+
T Consensus 79 i~Wa~yn~~Rf~~~~rr~~~~~~~~~elA~~--------f~l~~~~l~~lr~~k 124 (138)
T PF13994_consen 79 ILWAKYNRLRFRGRRRRRRPPPVSDEELARS--------FGLSPEQLQQLRQAK 124 (138)
T ss_pred HHHHHHHHHHhcchhhccCCCCCCHHHHHHH--------cCCCHHHHHHHHhCC
Confidence 3445778899999999988887777777665 467899999987643
No 154
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=78 Score=32.66 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=34.9
Q ss_pred CCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 29 GEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
.|...|-||..++-+..+.||+ |++|-.==-++--| ...|=.||++....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~--------H~SC~~CI~qHlmN--~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCS--------HRSCYGCITQHLMN--CKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCC--------CchHHHHHHHHHhc--CCeeeEecceeeeh
Confidence 5678999999988888999986 66653322222111 35799999988753
No 155
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.30 E-value=1.2e+02 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020734 253 FTVIGIFYSVLVATMVGQR 271 (322)
Q Consensus 253 ~~~~g~~~~~~~~~~~~~r 271 (322)
|.++|++-|+..|-....|
T Consensus 80 ~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 80 MLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4667888888877555443
No 156
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=22.05 E-value=1.4e+02 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.682 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 020734 239 LPLLFIMALIVLGLFTVIGIFY 260 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~ 260 (322)
.|+-+|-.+.=+++..++|+||
T Consensus 8 IPLWlVgtv~G~~vi~lvglFf 29 (40)
T PF01788_consen 8 IPLWLVGTVAGIAVIGLVGLFF 29 (40)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhe
Confidence 4666665555566667788764
No 157
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.97 E-value=1.2e+02 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 020734 239 LPLLFIMALIVLGLFTVIGIFYSV 262 (322)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~ 262 (322)
+=.++|++|++-++.+|+.|+|.+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666653
No 158
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=21.93 E-value=1.6e+02 Score=29.59 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 020734 253 FTVIGIFYSVLVATMVGQRIWQRHY 277 (322)
Q Consensus 253 ~~~~g~~~~~~~~~~~~~ri~~r~~ 277 (322)
+|-+|++.|.++.+.++++.-+||+
T Consensus 163 ~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 163 AATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4889999999999999999988888
No 159
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.43 E-value=65 Score=26.23 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q 020734 254 TVIGIFYSVLV 264 (322)
Q Consensus 254 ~~~g~~~~~~~ 264 (322)
..+||+||+.=
T Consensus 18 L~~Gv~YG~~~ 28 (86)
T PF05680_consen 18 LGLGVVYGAYH 28 (86)
T ss_pred HHHHHHHHHHH
Confidence 46899999863
No 160
>COG4758 Predicted membrane protein [Function unknown]
Probab=21.38 E-value=2.7e+02 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020734 242 LFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQ 274 (322)
Q Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ri~~ 274 (322)
++....+++..|.++|.+|+++.-...-+-+|.
T Consensus 59 ~lf~~i~~li~F~ll~~~~aii~i~~~~~~~~~ 91 (235)
T COG4758 59 FLFFAIVFLIPFTLLGFLLAIIFIFIGLYLIIK 91 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566777889999999999887777777776
No 161
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=21.35 E-value=77 Score=31.45 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=12.6
Q ss_pred HHHHhhh-h-hhhhhhcccccccee
Q 020734 269 GQRIWQR-H-YHILAKRMLTKEYVV 291 (322)
Q Consensus 269 ~~ri~~r-~-~~il~k~~~tk~~~~ 291 (322)
|+|+|++ | .|.|.++-++..++|
T Consensus 299 g~~~f~~~hlHH~l~~~G~s~~~vv 323 (344)
T PRK00108 299 GKRIFRMAPIHHHFELKGWSETKVV 323 (344)
T ss_pred CCCCCCCCCHHHHHHHcCCChHHHH
Confidence 4555554 4 455556566655554
No 162
>PRK00523 hypothetical protein; Provisional
Probab=21.19 E-value=2.1e+02 Score=22.99 Aligned_cols=22 Identities=5% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 020734 254 TVIGIFYSVLVATMVGQRIWQR 275 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r 275 (322)
+|++++-|++++.....|.+.+
T Consensus 11 ~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888777766654
No 163
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=21.09 E-value=79 Score=33.72 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=19.6
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 020734 237 AGLPLLF-IMALIVLGLFTVIGIFYSVLVA 265 (322)
Q Consensus 237 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 265 (322)
++.|++. +.++|+++| +|+++.||.--+
T Consensus 326 keIPvllQIPVLIii~L-~Il~fcygaG~s 354 (549)
T PF05934_consen 326 KEIPVLLQIPVLIIIAL-AILSFCYGAGQS 354 (549)
T ss_pred hcCCchhhhHHHHHHHH-HHHHHHHhhcce
Confidence 5678886 556666666 789998875433
No 164
>PRK09109 motC flagellar motor protein; Reviewed
Probab=21.01 E-value=85 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccceeecC
Q 020734 254 TVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDV 294 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~ 294 (322)
|+++-+||+++|.++..-|.+|=-+...+.+..+|-+.|-+
T Consensus 185 ALvtT~~Gl~vA~~~~~Pia~kl~~~~~~e~~~~~~i~egi 225 (246)
T PRK09109 185 AFVATIYGVASANLLFLPVANKLKSIIHRQSRYREMLVEGL 225 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999988888777777777777777776655
No 165
>PHA02649 hypothetical protein; Provisional
Probab=20.91 E-value=1.3e+02 Score=25.29 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020734 256 IGIFYSVLVATMVGQRIWQRHYHILA 281 (322)
Q Consensus 256 ~g~~~~~~~~~~~~~ri~~r~~~il~ 281 (322)
+-+..+++|.....+|+-.|.||+|-
T Consensus 46 iDvlil~iV~~~~~iRl~kRNy~~Ll 71 (95)
T PHA02649 46 VDLMILLIVLNDVIIRVIKRNYKILL 71 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445566777788999999999874
No 166
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=20.82 E-value=75 Score=25.90 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=10.3
Q ss_pred cchHHHHHHHHHHHHHH
Q 020734 238 GLPLLFIMALIVLGLFT 254 (322)
Q Consensus 238 ~~~~~~~~~~~~~~~~~ 254 (322)
|.+=|+|+++|+|+||.
T Consensus 5 g~~elliIlvivlllFG 21 (81)
T PRK04598 5 SIWQLLIIAVIVVLLFG 21 (81)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 34556666666666654
No 167
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.69 E-value=1.4e+02 Score=21.25 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020734 246 ALIVLGLFTVIGIFYSVL 263 (322)
Q Consensus 246 ~~~~~~~~~~~g~~~~~~ 263 (322)
++++++++.++.++..++
T Consensus 21 gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 21 GLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 333333334444443333
No 168
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=20.61 E-value=76 Score=28.49 Aligned_cols=17 Identities=29% Similarity=0.804 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020734 253 FTVIGIFYSVLVATMVG 269 (322)
Q Consensus 253 ~~~~g~~~~~~~~~~~~ 269 (322)
|.++|.+||+++|.++.
T Consensus 2 ~~~vg~l~al~laf~~~ 18 (209)
T PF14023_consen 2 FGVVGVLFALLLAFTIS 18 (209)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56778888887776554
No 169
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=89 Score=29.61 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhh
Q 020734 265 ATMVGQRIWQRH 276 (322)
Q Consensus 265 ~~~~~~ri~~r~ 276 (322)
+++.|.|-||+|
T Consensus 34 ~~lfGW~ywq~~ 45 (207)
T COG2976 34 GGLFGWRYWQSH 45 (207)
T ss_pred HHHHHHHHHHHH
Confidence 456799999998
No 170
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=20.39 E-value=1.1e+02 Score=28.82 Aligned_cols=21 Identities=10% Similarity=0.483 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020734 247 LIVLGLFTVIGIFYSVLVATM 267 (322)
Q Consensus 247 ~~~~~~~~~~g~~~~~~~~~~ 267 (322)
++.+++++++|+++|.+++.-
T Consensus 5 ~~~v~~l~~l~~~~G~~L~~A 25 (198)
T COG2878 5 IIAVAALALLGLAFGAMLGYA 25 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555689999999988754
No 171
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.24 E-value=1.2e+02 Score=24.11 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=7.8
Q ss_pred CCCChHHHHHhh
Q 020734 306 APLPPEHVQQLK 317 (322)
Q Consensus 306 ~~~~~~~~~~~~ 317 (322)
-+|.|+|..-|-
T Consensus 51 d~L~~~Hl~SfY 62 (68)
T PF05961_consen 51 DKLKPDHLSSFY 62 (68)
T ss_pred hccCHHHHHHHH
Confidence 467777766553
No 172
>PRK01844 hypothetical protein; Provisional
Probab=20.01 E-value=2.3e+02 Score=22.75 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 020734 254 TVIGIFYSVLVATMVGQRIWQR 275 (322)
Q Consensus 254 ~~~g~~~~~~~~~~~~~ri~~r 275 (322)
+|++++-|++++.....|.+.+
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999988888777776654
No 173
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the