Query 020734
Match_columns 322
No_of_seqs 167 out of 752
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 3.7E-19 1.3E-23 132.2 2.9 58 28-88 3-60 (60)
2 2d8s_A Cellular modulator of i 99.6 4E-16 1.4E-20 121.7 3.8 65 27-94 11-77 (80)
3 1x4j_A Ring finger protein 38; 97.5 5.3E-05 1.8E-09 56.2 3.0 53 25-87 17-72 (75)
4 2kiz_A E3 ubiquitin-protein li 97.2 0.00017 5.9E-09 52.3 2.7 53 27-89 10-65 (69)
5 2ecm_A Ring finger and CHY zin 97.2 0.00015 5.3E-09 50.1 2.1 49 28-86 2-54 (55)
6 2l0b_A E3 ubiquitin-protein li 97.1 0.00032 1.1E-08 54.3 3.4 50 28-87 37-89 (91)
7 1v87_A Deltex protein 2; ring- 97.0 0.00014 4.6E-09 57.8 1.1 55 30-89 24-96 (114)
8 1iym_A EL5; ring-H2 finger, ub 96.9 0.00016 5.3E-09 50.2 0.4 48 30-86 4-54 (55)
9 2ep4_A Ring finger protein 24; 96.9 0.0006 2.1E-08 50.0 3.4 49 29-87 13-64 (74)
10 2ecl_A Ring-box protein 2; RNF 96.8 0.00058 2E-08 51.9 2.5 51 30-89 14-78 (81)
11 2csy_A Zinc finger protein 183 96.7 0.0011 3.7E-08 49.7 3.3 49 28-86 12-60 (81)
12 2ct2_A Tripartite motif protei 96.6 0.00093 3.2E-08 50.1 2.8 54 28-88 12-69 (88)
13 2ysl_A Tripartite motif-contai 96.6 0.00087 3E-08 48.8 2.0 53 28-87 17-69 (73)
14 1chc_A Equine herpes virus-1 r 96.6 0.0014 4.7E-08 47.2 3.0 51 29-89 3-54 (68)
15 2ea6_A Ring finger protein 4; 96.5 0.00051 1.7E-08 49.2 0.6 48 29-86 13-67 (69)
16 2ect_A Ring finger protein 126 96.5 0.00074 2.5E-08 50.0 1.5 53 27-89 11-66 (78)
17 2d8t_A Dactylidin, ring finger 96.5 0.00058 2E-08 50.1 0.8 51 28-88 12-62 (71)
18 2yur_A Retinoblastoma-binding 96.3 0.0019 6.5E-08 47.9 2.5 50 29-86 13-63 (74)
19 2ysj_A Tripartite motif-contai 96.2 0.0046 1.6E-07 44.0 4.2 47 28-81 17-63 (63)
20 3ng2_A RNF4, snurf, ring finge 96.2 0.00087 3E-08 48.4 0.2 50 28-87 7-63 (71)
21 2xeu_A Ring finger protein 4; 96.1 0.00089 3E-08 47.2 -0.0 48 30-87 2-56 (64)
22 2djb_A Polycomb group ring fin 96.1 0.002 6.9E-08 47.2 1.7 50 29-88 13-63 (72)
23 2ecw_A Tripartite motif-contai 96.0 0.0057 1.9E-07 45.1 3.8 55 29-88 17-72 (85)
24 2ecy_A TNF receptor-associated 95.8 0.0025 8.6E-08 45.9 1.3 51 28-87 12-62 (66)
25 2ecj_A Tripartite motif-contai 95.8 0.0049 1.7E-07 42.7 2.7 47 28-81 12-58 (58)
26 2ct0_A Non-SMC element 1 homol 95.8 0.0025 8.7E-08 48.9 1.1 53 30-89 14-66 (74)
27 2ecv_A Tripartite motif-contai 95.7 0.0075 2.6E-07 44.4 3.4 55 29-88 17-72 (85)
28 2ecn_A Ring finger protein 141 95.7 0.0009 3.1E-08 48.6 -1.6 49 28-87 12-60 (70)
29 3dpl_R Ring-box protein 1; ubi 95.4 0.0068 2.3E-07 49.0 2.6 28 56-88 75-102 (106)
30 3ztg_A E3 ubiquitin-protein li 95.4 0.0097 3.3E-07 45.2 3.3 51 28-86 10-61 (92)
31 2y1n_A E3 ubiquitin-protein li 95.1 0.013 4.5E-07 57.6 3.8 52 30-90 331-382 (389)
32 1t1h_A Gspef-atpub14, armadill 94.7 0.01 3.6E-07 43.7 1.5 51 28-87 5-55 (78)
33 1jm7_A BRCA1, breast cancer ty 94.7 0.013 4.6E-07 45.7 2.2 51 30-87 20-70 (112)
34 4a0k_B E3 ubiquitin-protein li 94.7 0.0071 2.4E-07 50.1 0.6 28 56-88 86-113 (117)
35 1e4u_A Transcriptional repress 94.6 0.015 5E-07 44.5 2.2 53 29-88 9-63 (78)
36 3k1l_B Fancl; UBC, ring, RWD, 94.4 0.025 8.6E-07 55.4 3.9 56 29-87 306-373 (381)
37 2y43_A E3 ubiquitin-protein li 94.4 0.0037 1.3E-07 48.4 -1.6 48 30-87 21-69 (99)
38 4ayc_A E3 ubiquitin-protein li 94.3 0.0099 3.4E-07 49.1 0.7 48 31-88 53-100 (138)
39 2ckl_B Ubiquitin ligase protei 94.3 0.0086 2.9E-07 50.6 0.3 47 32-87 55-102 (165)
40 1g25_A CDK-activating kinase a 94.2 0.0093 3.2E-07 42.7 0.3 49 30-87 2-55 (65)
41 2egp_A Tripartite motif-contai 94.2 0.006 2E-07 44.8 -0.9 55 28-87 9-65 (79)
42 3hct_A TNF receptor-associated 94.1 0.022 7.7E-07 45.6 2.4 53 26-87 13-65 (118)
43 3lrq_A E3 ubiquitin-protein li 94.0 0.019 6.4E-07 44.9 1.7 49 30-87 21-70 (100)
44 4ap4_A E3 ubiquitin ligase RNF 93.2 0.012 3.9E-07 46.7 -0.9 49 29-87 5-60 (133)
45 3fl2_A E3 ubiquitin-protein li 93.1 0.029 9.8E-07 45.2 1.4 49 30-87 51-99 (124)
46 4ap4_A E3 ubiquitin ligase RNF 92.8 0.018 6.3E-07 45.5 -0.2 50 28-87 69-125 (133)
47 1rmd_A RAG1; V(D)J recombinati 92.3 0.048 1.6E-06 43.2 1.7 49 30-87 22-70 (116)
48 2vje_B MDM4 protein; proto-onc 92.2 0.043 1.5E-06 39.8 1.1 56 26-90 2-59 (63)
49 3knv_A TNF receptor-associated 91.9 0.019 6.7E-07 48.1 -1.1 52 27-87 27-78 (141)
50 1z6u_A NP95-like ring finger p 91.9 0.049 1.7E-06 46.0 1.4 49 31-88 78-126 (150)
51 4ic3_A E3 ubiquitin-protein li 91.5 0.0084 2.9E-07 44.7 -3.4 47 30-90 23-70 (74)
52 2ckl_A Polycomb group ring fin 91.4 0.036 1.2E-06 43.5 -0.0 48 30-87 14-62 (108)
53 2vje_A E3 ubiquitin-protein li 90.5 0.092 3.1E-06 38.1 1.5 52 30-90 7-60 (64)
54 2ea5_A Cell growth regulator w 89.2 0.22 7.6E-06 36.7 2.7 53 26-91 10-62 (68)
55 3l11_A E3 ubiquitin-protein li 88.6 0.039 1.3E-06 43.7 -2.0 49 30-87 14-62 (115)
56 3hcs_A TNF receptor-associated 87.6 0.23 7.9E-06 41.8 2.1 53 26-87 13-65 (170)
57 1weu_A Inhibitor of growth fam 87.4 0.5 1.7E-05 37.6 3.8 59 20-84 25-85 (91)
58 2kr4_A Ubiquitin conjugation f 84.3 0.65 2.2E-05 35.3 3.0 49 29-87 12-60 (85)
59 2ecg_A Baculoviral IAP repeat- 84.2 0.11 3.7E-06 38.5 -1.5 47 30-89 24-70 (75)
60 1wgm_A Ubiquitin conjugation f 84.0 0.62 2.1E-05 36.7 2.8 51 28-87 19-69 (98)
61 2c2l_A CHIP, carboxy terminus 83.9 0.55 1.9E-05 41.4 2.7 49 30-87 207-255 (281)
62 1bor_A Transcription factor PM 82.6 0.23 7.9E-06 34.8 -0.2 47 29-88 4-50 (56)
63 1jm7_B BARD1, BRCA1-associated 82.5 0.19 6.3E-06 40.1 -0.8 45 30-86 21-66 (117)
64 2lri_C Autoimmune regulator; Z 74.6 0.65 2.2E-05 34.6 0.1 56 23-84 4-59 (66)
65 1wen_A Inhibitor of growth fam 74.5 1.2 4.1E-05 33.5 1.6 57 22-84 7-65 (71)
66 2kre_A Ubiquitin conjugation f 73.5 1 3.6E-05 35.4 1.1 50 28-87 26-75 (100)
67 3t6p_A Baculoviral IAP repeat- 73.5 0.43 1.5E-05 45.8 -1.4 48 30-90 294-341 (345)
68 3nw0_A Non-structural maintena 73.2 1.2 4.1E-05 40.5 1.6 52 30-88 179-230 (238)
69 2yho_A E3 ubiquitin-protein li 71.5 1 3.5E-05 33.9 0.5 49 30-91 17-65 (79)
70 2yu4_A E3 SUMO-protein ligase 70.0 3.2 0.00011 31.8 3.1 53 27-84 3-59 (94)
71 1wim_A KIAA0161 protein; ring 69.7 3.3 0.00011 31.4 3.1 56 27-87 1-64 (94)
72 2f42_A STIP1 homology and U-bo 60.5 3.6 0.00012 36.1 1.9 51 28-87 103-153 (179)
73 2vnf_A ING 4, P29ING4, inhibit 60.0 0.76 2.6E-05 33.4 -2.1 54 24-83 3-58 (60)
74 1spf_A Pulmonary surfactant-as 59.1 9.1 0.00031 25.5 3.2 20 240-259 12-31 (35)
75 2jmi_A Protein YNG1, ING1 homo 58.1 2.3 7.7E-05 33.7 0.2 59 19-83 14-75 (90)
76 1weo_A Cellulose synthase, cat 57.0 7.8 0.00027 31.1 3.1 50 30-86 15-69 (93)
77 2jwa_A Receptor tyrosine-prote 41.3 49 0.0017 23.1 4.8 17 247-263 18-34 (44)
78 2ko5_A Ring finger protein Z; 39.1 14 0.00047 30.0 2.0 62 19-91 16-77 (99)
79 3c6w_A P28ING5, inhibitor of g 35.0 3.4 0.00012 29.9 -2.0 50 28-83 6-57 (59)
80 3nl9_A Putative NTP pyrophosph 34.7 25 0.00087 30.5 3.1 60 259-318 105-169 (171)
81 2k16_A Transcription initiatio 34.7 11 0.00038 27.7 0.7 54 28-85 15-69 (75)
82 1iij_A ERBB-2 receptor protein 31.9 18 0.00062 24.2 1.3 22 243-264 10-31 (35)
83 3htk_C E3 SUMO-protein ligase 31.3 19 0.00065 33.7 1.9 51 29-87 179-232 (267)
84 3gia_A Uncharacterized protein 30.8 78 0.0027 29.2 6.0 35 259-297 405-439 (444)
85 2g6q_A Inhibitor of growth pro 30.6 9.1 0.00031 27.9 -0.4 54 24-83 4-59 (62)
86 1wew_A DNA-binding family prot 30.0 29 0.00099 25.9 2.4 60 20-83 5-71 (78)
87 3ql9_A Transcriptional regulat 29.0 30 0.001 29.0 2.5 51 28-83 54-110 (129)
88 2ku3_A Bromodomain-containing 28.3 26 0.00088 26.2 1.8 51 27-83 12-65 (71)
89 1wil_A KIAA1045 protein; ring 27.7 33 0.0011 27.3 2.4 35 28-66 12-47 (89)
90 1q90_M Cytochrome B6F complex 27.5 73 0.0025 21.8 3.7 12 254-265 17-28 (39)
91 1vf5_F Protein PET M; photosyn 26.9 78 0.0027 21.1 3.7 11 254-264 16-26 (35)
92 1pfi_A Major coat protein of P 25.8 64 0.0022 22.6 3.3 15 249-263 29-43 (46)
93 2bay_A PRE-mRNA splicing facto 25.0 31 0.001 24.6 1.6 46 32-87 4-50 (61)
94 2k85_A Glucocorticoid receptor 25.0 28 0.00096 26.6 1.5 20 262-281 48-67 (69)
95 2knc_B Integrin beta-3; transm 24.4 57 0.002 24.9 3.2 8 266-273 25-32 (79)
96 2kxw_B Sodium channel protein 23.1 41 0.0014 21.1 1.7 15 264-278 7-21 (27)
97 2l43_A N-teminal domain from h 22.1 45 0.0015 25.7 2.2 50 29-84 23-75 (88)
98 2k4n_A Protein PF0246; beta-sh 20.3 35 0.0012 27.6 1.2 21 286-311 43-66 (111)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.74 E-value=3.7e-19 Score=132.17 Aligned_cols=58 Identities=31% Similarity=0.721 Sum_probs=51.8
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
++++++||||+++++++++.||+|+||++|||++||++|++.++ ...||+|+++|+++
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---NTACQICGVVYNTR 60 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---CSBCTTTCCBCCCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---CCccCCCCCeeecC
Confidence 34678999999877778999999999999999999999999886 37999999999864
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4e-16 Score=121.70 Aligned_cols=65 Identities=31% Similarity=0.780 Sum_probs=55.7
Q ss_pred CCCCCCeeEEeccC--CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEeeCcc
Q 020734 27 GPGEQIQCRICLET--DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAAD 94 (322)
Q Consensus 27 ~s~e~~~CRIC~e~--e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~k~~ 94 (322)
.++++..||||+++ ++++++.||+|+|+++++|++||++|++.++ ...|++|+++|.++.+++++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---TRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---CSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---CCCCCCCCCeeecCcccCCC
Confidence 34567899999964 3578999999999999999999999999875 47899999999998877654
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=5.3e-05 Score=56.19 Aligned_cols=53 Identities=25% Similarity=0.567 Sum_probs=38.6
Q ss_pred cCCCCCCCeeEEeccCCC---CccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 25 EAGPGEQIQCRICLETDG---RDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 25 e~~s~e~~~CRIC~e~e~---~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
++...+...|-||++.-+ .....||. ...|..|+.+|++.+ ..|++|+.++..
T Consensus 17 ~~~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 17 NNHQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN-----RTCPICRADSGP 72 (75)
T ss_dssp SSCSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC-----SSCTTTCCCCCC
T ss_pred ccccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC-----CcCcCcCCcCCC
Confidence 334556789999997522 22556763 568999999999875 479999988753
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.18 E-value=0.00017 Score=52.30 Aligned_cols=53 Identities=23% Similarity=0.641 Sum_probs=39.0
Q ss_pred CCCCCCeeEEeccC---CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 27 GPGEQIQCRICLET---DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 27 ~s~e~~~CRIC~e~---e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
+..+...|.||++. .+...+.||. ...|..|+.+|++.+. .|++|+.++....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK-----KCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS-----BCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC-----CCcCcCccccCcC
Confidence 34566889999864 2344567763 4589999999998753 6999999876543
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.17 E-value=0.00015 Score=50.10 Aligned_cols=49 Identities=27% Similarity=0.605 Sum_probs=37.6
Q ss_pred CCCCCeeEEeccCC----CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 28 PGEQIQCRICLETD----GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 28 s~e~~~CRIC~e~e----~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+++...|.||++.- +...+.||. ...|..|+.+|++.+ ..|++|+.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 45678899999742 235677863 468999999999886 47999998764
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=54.28 Aligned_cols=50 Identities=24% Similarity=0.726 Sum_probs=37.1
Q ss_pred CCCCCeeEEeccC--C-CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLET--D-GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~--e-~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
.++...|-||++. + +.....||. ...|..|+.+|++.+ ..|++|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~-----~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS-----GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT-----CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC-----CcCcCcCccCCC
Confidence 4467899999964 2 234557754 569999999999754 489999988753
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.05 E-value=0.00014 Score=57.81 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=38.2
Q ss_pred CCCeeEEeccCCCC--------------c-c---ccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 30 EQIQCRICLETDGR--------------D-F---IAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 30 e~~~CRIC~e~e~~--------------~-L---IsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
....|-||++.-.+ + . +.||. ...|..||.+|++.........|++|+..|....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 45699999864111 1 1 45663 5689999999997643223579999999998653
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.94 E-value=0.00016 Score=50.19 Aligned_cols=48 Identities=25% Similarity=0.723 Sum_probs=34.7
Q ss_pred CCCeeEEeccCC---CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLETD---GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~e---~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+...|-||++.- +.....| .|. ...|..|+.+|++.+ ..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~C~---H~f~~~Ci~~w~~~~-----~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP-RCG---HGFHAECVDMWLGSH-----STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS-SSC---CEECTTHHHHTTTTC-----CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECC-CCC---CcccHHHHHHHHHcC-----CcCcCCCCEeE
Confidence 557899999742 2344555 343 568999999999654 47999998865
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.0006 Score=50.04 Aligned_cols=49 Identities=37% Similarity=0.712 Sum_probs=35.4
Q ss_pred CCCCeeEEeccCCC--C-ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 29 GEQIQCRICLETDG--R-DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 29 ~e~~~CRIC~e~e~--~-~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
.+...|.||++.-. . ..+.|| . ...|..|+.+|++.+ ..|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C--~---H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPC--K---HAFHRKCLIKWLEVR-----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETT--T---EEEEHHHHHHHHHHC-----SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCC--C---CEecHHHHHHHHHcC-----CcCCCcCccccc
Confidence 35678999997522 1 223365 2 458999999999875 379999998764
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.00058 Score=51.94 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=35.6
Q ss_pred CCCeeEEeccCC-------------CC-ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 30 EQIQCRICLETD-------------GR-DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 30 e~~~CRIC~e~e-------------~~-~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
+...|-||++.- ++ ....| .|. ...|..|+.+|++.+ ..|++|++++..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~---H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECN---HSFHNCCMSLWVKQN-----NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTS---CEEEHHHHHHHTTTC-----CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCC---CccChHHHHHHHHhC-----CCCCCcCCCcchhh
Confidence 346688887531 11 23344 454 679999999999875 48999999988754
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=49.69 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=39.4
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
..+...|.||++.-.++.+.||. ...|..|+.+|++.+ ..|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCR-----HYFCESCALEHFRAT-----PRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTS-----CEEEHHHHHHHHHHC-----SBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCC-----CHhHHHHHHHHHHCC-----CcCCCcCcccc
Confidence 44568999999876667888874 456999999999753 58999999986
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.00093 Score=50.10 Aligned_cols=54 Identities=22% Similarity=0.463 Sum_probs=40.4
Q ss_pred CCCCCeeEEeccCCCC----ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 28 PGEQIQCRICLETDGR----DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~----~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
..+...|-||++.-.+ +.+.||. ...|..|+.+|++.+. +...|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSI--NGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCS--SCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCC--CCcCCCCCCCcccch
Confidence 3456889999975322 6677762 5689999999998763 247899999998753
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00087 Score=48.81 Aligned_cols=53 Identities=21% Similarity=0.482 Sum_probs=40.2
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..+...|.||++.-.++.+.||. ...|..|+.+|++.++ ....|++|+.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCG-----HNFCLKCITQIGETSC--GFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTC-----CEEEHHHHHHHCSSSC--SCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCC-----ChhhHHHHHHHHHcCC--CCCCCCCCCCcCCc
Confidence 44668999999876667766652 4589999999997432 24789999998764
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.55 E-value=0.0014 Score=47.21 Aligned_cols=51 Identities=27% Similarity=0.607 Sum_probs=39.1
Q ss_pred CCCCeeEEeccCCCCc-cccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 29 GEQIQCRICLETDGRD-FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~-LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
++...|.||++.-.++ ...||. ...|..|+.+|++.+ ..|++|+.++....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN-----PTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS-----CSTTTTCCCCCCEE
T ss_pred CCCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc-----CcCcCCChhhHhhh
Confidence 3567899999865554 677864 458999999999765 48999999987543
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.00051 Score=49.18 Aligned_cols=48 Identities=19% Similarity=0.489 Sum_probs=35.5
Q ss_pred CCCCeeEEeccCCCC-------ccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 29 GEQIQCRICLETDGR-------DFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~-------~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
.+...|-||++.-.+ ..+.||. ...|..|+.+|++.+ ..|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC-----SSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC-----CCCCCCCCccC
Confidence 456789999974211 2556763 468999999999874 48999999875
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.52 E-value=0.00074 Score=50.03 Aligned_cols=53 Identities=21% Similarity=0.558 Sum_probs=38.1
Q ss_pred CCCCCCeeEEeccCC---CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 27 GPGEQIQCRICLETD---GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e---~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
...+...|.||++.- ....+.||. ...|..|+.+|++.+ ..|++|+.++..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH-----DSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT-----CSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC-----CcCcCcCCccCCcc
Confidence 344668999998742 222345753 568999999999654 48999999987643
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.00058 Score=50.09 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=39.9
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
..+...|.||++.-.++...||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCK-----HVFCYLCVKGASWLG-----KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTT-----EEEEHHHHHHCTTCS-----SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCC-----CHHHHHHHHHHHHCC-----CcCcCcCchhCHh
Confidence 34567899999876667777763 458999999999754 5899999998753
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.28 E-value=0.0019 Score=47.86 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=39.1
Q ss_pred CCCCeeEEeccCCCCccccc-cccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 29 GEQIQCRICLETDGRDFIAP-CKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIsP-C~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
.+...|.||++.-.++.+.| |. ...|+.|+.+|++.++ ...|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCG-----NSYCDECIRTALLESD---EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSC-----CEECTTHHHHHHHHSS---SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCC-----CHHHHHHHHHHHHhcC---CCcCCCCCCcCC
Confidence 35578999998666677777 53 4579999999999764 368999999754
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.0046 Score=43.98 Aligned_cols=47 Identities=23% Similarity=0.575 Sum_probs=35.4
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccC
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTC 81 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElC 81 (322)
..+...|.||++.-.++.+.||. ...|+.|+.+|++.+++ ...|++|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~--~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCG-----HNFCLKCITQIGETSCG--FFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTS-----SEECHHHHHHHHHHCSS--CCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCC-----CcchHHHHHHHHHcCCC--CCcCcCC
Confidence 44668999999876667777753 45899999999986432 4689887
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.19 E-value=0.00087 Score=48.43 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=36.9
Q ss_pred CCCCCeeEEeccCCC-------CccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDG-------RDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~-------~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+++...|-||++.-. ...+.||. ...|..|+.+|++.+ ..|++|+.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC-----CCCCCCCCccCh
Confidence 445688999986421 12566663 458999999999865 489999998864
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.13 E-value=0.00089 Score=47.20 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=35.6
Q ss_pred CCCeeEEeccCCC-------CccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDG-------RDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~-------~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|-||++.-. ...+.||. ...|.+|+.+|++.+ ..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHcC-----CCCCCCCccCCc
Confidence 5678999987421 12556663 458999999999874 489999998764
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.08 E-value=0.002 Score=47.24 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCCCeeEEeccCCCCccc-cccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 29 GEQIQCRICLETDGRDFI-APCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LI-sPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
.+...|.||++.-.++.. .||. ...|..|+.+|++.+ ..|++|+.++..+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYYS-----NRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHHC-----SSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHcC-----CcCCCcCcccCcc
Confidence 356789999986555554 4764 447999999999764 5899999998754
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.99 E-value=0.0057 Score=45.09 Aligned_cols=55 Identities=25% Similarity=0.546 Sum_probs=41.3
Q ss_pred CCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhc-CcCccccccCCCceeee
Q 020734 29 GEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVRE-GFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~-~~~~~~CElCK~~Y~~~ 88 (322)
.+...|.||++.-.++.+.||. ...|..|+.+|+..+. ......|++|+.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3457899999876667777753 4589999999998853 11247899999998753
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.0025 Score=45.86 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=37.8
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..+...|.||++.-.++...||. ...|..|+.+|++.+ ...|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECG-----HRFCESCMAALLSSS----SPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSS-----CCCCHHHHHHHHTTS----SCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCC-----CHHHHHHHHHHHHhC----cCCCCCCCcCCCh
Confidence 34568899999765556666654 447999999999732 3689999998754
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.82 E-value=0.0049 Score=42.67 Aligned_cols=47 Identities=23% Similarity=0.544 Sum_probs=34.5
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccC
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTC 81 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElC 81 (322)
..+...|.||++.-.++.+.||. ...|..|+.+|++..+ ....|++|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECG-----HNFCKACITRWWEDLE--RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSC-----CCCCHHHHHHHTTSSC--CSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCC-----CccCHHHHHHHHHhcC--CCCCCCCC
Confidence 34568999999876667777763 4479999999986522 14688887
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.76 E-value=0.0025 Score=48.94 Aligned_cols=53 Identities=15% Similarity=0.343 Sum_probs=37.0
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
..+.|-||++.-......+ .|. .-.|..|+.+|++.+. ...|++|+.++..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~-~C~---h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE-TCG---IRMHLPCVAKYFQSNA---EPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS-SSC---CEECHHHHHHHSTTCS---SCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccC-CCC---chhhHHHHHHHHHhcC---CCCCCCCcCcCCCCC
Confidence 4588999987421112222 443 5689999999998664 368999999987654
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.0075 Score=44.44 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=41.0
Q ss_pred CCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhc-CcCccccccCCCceeee
Q 020734 29 GEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVRE-GFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~-~~~~~~CElCK~~Y~~~ 88 (322)
.+...|.||++.-.++...||. ...|..|+.+|++.+. ......|++|+.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3567899999876667777763 4589999999998731 11257899999998753
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.69 E-value=0.0009 Score=48.59 Aligned_cols=49 Identities=22% Similarity=0.704 Sum_probs=38.1
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..+...|.||++...+ .+.||. ...|..|+.+|++. ...|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~Cg-----H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCA-----HSFCQKCIDKWSDR-----HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTT-----EEECHHHHHHSSCC-----CSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCC-----CcccHHHHHHHHHC-----cCcCCCcCCcccC
Confidence 3456899999986555 778874 45899999999873 3689999988764
No 29
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.44 E-value=0.0068 Score=49.01 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=24.1
Q ss_pred cccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 56 KYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 56 kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
...|..|+.+|+..+ ..|++|+.+|.++
T Consensus 75 H~FH~~Ci~~Wl~~~-----~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 75 HAFHFHCISRWLKTR-----QVCPLDNREWEFQ 102 (106)
T ss_dssp CEEEHHHHHHHHTTC-----SBCSSSCSBCCEE
T ss_pred cEECHHHHHHHHHcC-----CcCcCCCCcceee
Confidence 579999999999864 5899999998765
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.44 E-value=0.0097 Score=45.24 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=39.8
Q ss_pred CCCCCeeEEeccCCCCccccc-cccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 28 PGEQIQCRICLETDGRDFIAP-CKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsP-C~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
..+.-.|-||++.-.+|.+.| |. ...++.|+.+|+..++ ...|++|+.++.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCG-----NSYCDECIRTALLESD---EHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTC-----CEECHHHHHHHHHHCT---TCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCceECCCCC-----CHHHHHHHHHHHHhcC---CCcCcCCCCcCC
Confidence 346689999998655677777 52 4478999999998764 368999999873
No 31
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.08 E-value=0.013 Score=57.60 Aligned_cols=52 Identities=25% Similarity=0.539 Sum_probs=41.9
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
+...|.||++...++.+.||.= ..|..|+.+|+..+ ...|++|+.++.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH-----~FC~~Ci~~wl~~~----~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGH-----LMCTSCLTSWQESE----GQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCC-----EECHHHHHHHHHHT----CSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCC-----hhhHHHHHHHHhcC----CCCCCCCCCccCCcee
Confidence 4479999998777788899864 25999999999853 3689999999887654
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=94.68 E-value=0.01 Score=43.71 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=39.7
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..+.-.|-||++.-.+|.+.||. ...++.|+.+|++.+ ...|++|+.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~Cg-----H~fc~~Ci~~~~~~~----~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTG-----QTYERSSIQKWLDAG----HKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTT-----EEEEHHHHHHHHTTT----CCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCC-----CeecHHHHHHHHHHC----cCCCCCCcCCCCh
Confidence 34568999999865667877753 457899999999753 3689999998764
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.68 E-value=0.013 Score=45.69 Aligned_cols=51 Identities=22% Similarity=0.490 Sum_probs=39.4
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|.||++.-.++.+.||. ...|..|+.+|+..+.+ ...|++|+.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~--~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCD-----HIFCKFCMLKLLNQKKG--PSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTS-----CCCCSHHHHHHHHSSSS--SCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCC-----CHHHHHHHHHHHHhCCC--CCCCcCCCCcCCH
Confidence 346899999866667777763 45799999999987542 4689999998764
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=94.67 E-value=0.0071 Score=50.08 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 56 KYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 56 kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
...|..|+.+|++.+ ..|++|+.+|.++
T Consensus 86 H~FH~~CI~~Wl~~~-----~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 86 HAFHFHCISRWLKTR-----QVCPLDNREWEFQ 113 (117)
T ss_dssp ---------------------------------
T ss_pred ceEcHHHHHHHHHcC-----CcCCCCCCeeeee
Confidence 568999999999875 4799999998764
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=94.61 E-value=0.015 Score=44.47 Aligned_cols=53 Identities=25% Similarity=0.626 Sum_probs=40.7
Q ss_pred CCCCeeEEeccCC--CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 29 GEQIQCRICLETD--GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~e--~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
+++..|-||++.- .+..+.||.|. .-.++.|+.++.+.. ...|++|+.+|..+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~~----~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTDE----NGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTSS----CSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhcC----CCCCCCCCCccCCC
Confidence 4567899999842 45678899995 458999999887532 46899999999864
No 36
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.42 E-value=0.025 Score=55.44 Aligned_cols=56 Identities=30% Similarity=0.810 Sum_probs=39.0
Q ss_pred CCCCeeEEeccC--CCCcc-ccccc---cCCCCcccchhHHHHHHHHhcC----c--CccccccCCCceee
Q 020734 29 GEQIQCRICLET--DGRDF-IAPCK---CKGTSKYVHRECLDHWRAVREG----F--AFAHCTTCKAPYHL 87 (322)
Q Consensus 29 ~e~~~CRIC~e~--e~~~L-IsPC~---CkGS~kyVH~~CL~~Wi~~s~~----~--~~~~CElCK~~Y~~ 87 (322)
+....|-||++. +++.+ ...|. |+ +..|..||.+|+++..+ + -...|+.|+.+...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 467899999973 22222 24464 55 78999999999987532 1 13689999997654
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.40 E-value=0.0037 Score=48.43 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=37.0
Q ss_pred CCCeeEEeccCCCCcccc-ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIA-PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIs-PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|.||++.-.++... ||. ...|..|+.+|++.+ ..|++|+.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCS-----HNYCSLCIRKFLSYK-----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHTTC-----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCC-----CHhhHHHHHHHHHCC-----CCCCCCCCcCCh
Confidence 457899999865556554 664 458999999999853 589999998764
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=94.32 E-value=0.0099 Score=49.06 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=38.0
Q ss_pred CCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 31 QIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 31 ~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
...|-||++.-.++.+.||. ...|..|+.+|+..+ ..|++|+.++...
T Consensus 53 ~~~C~iC~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCA-----HSFCSYCINEWMKRK-----IECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTS-----CEEEHHHHHHHTTTC-----SBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCC-----CCccHHHHHHHHHcC-----CcCCCCCCcCCCC
Confidence 35799999876677888873 468999999998754 5799999987643
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.32 E-value=0.0086 Score=50.57 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=36.0
Q ss_pred CeeEEeccCCCCcccc-ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 32 IQCRICLETDGRDFIA-PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 32 ~~CRIC~e~e~~~LIs-PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..|-||++.-.++... ||. ...|..|+.+|+..+ ...|++|+.++..
T Consensus 55 ~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECL-----HRFCADCIITALRSG----NKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTC-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCC-----ChhHHHHHHHHHHhC----cCCCCCCCCcCCC
Confidence 4899998865556554 664 568999999999863 3689999998753
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.22 E-value=0.0093 Score=42.69 Aligned_cols=49 Identities=16% Similarity=0.438 Sum_probs=35.3
Q ss_pred CCCeeEEecc-CCCCc----cccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLE-TDGRD----FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e-~e~~~----LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
++..|-||++ .-.++ .+.||. ...|.+|+.+|+..+ ...|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVRG----AGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHTT----SSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHcC----CCcCCCCCCcccc
Confidence 4578999998 32222 456764 347999999998753 3689999998864
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.16 E-value=0.006 Score=44.82 Aligned_cols=55 Identities=22% Similarity=0.442 Sum_probs=40.8
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcC--cCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREG--FAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~--~~~~~CElCK~~Y~~ 87 (322)
..+...|.||++.-.++.+.||. ...|..|+.+|++.+.. .....|++|+.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34568999999865567777753 45799999999986421 125789999999875
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.11 E-value=0.022 Score=45.60 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 26 AGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 26 ~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...+...|.||++.-.++...||. ...+..|+.+|++.++ ..|++|+.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCG-----HRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcC-----ChhhHHHHHHHHhhCC----CCCCCCCCCcCH
Confidence 3445667999999866667777752 4589999999999874 389999988754
No 43
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.00 E-value=0.019 Score=44.93 Aligned_cols=49 Identities=31% Similarity=0.749 Sum_probs=39.1
Q ss_pred CCCeeEEeccCCCCccc-cccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFI-APCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LI-sPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|-||++.-.++.. .||. ...|..|+.+|++.++ ..|++|+.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCS-----KLCCFSCIRRWLTEQR----AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCC-----ChhhHHHHHHHHHHCc----CCCCCCCCcCCH
Confidence 45789999987656766 7763 4579999999999873 589999999864
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.15 E-value=0.012 Score=46.74 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=36.7
Q ss_pred CCCCeeEEeccCCCCc-------cccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 29 GEQIQCRICLETDGRD-------FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~-------LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
++...|-||++.-.++ .+.||. ...|.+|+.+|++.+ ..|++|+.++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC-----SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC-----CCCCCCCCcCcc
Confidence 4568899998742222 566763 458999999999765 489999998864
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=93.09 E-value=0.029 Score=45.15 Aligned_cols=49 Identities=27% Similarity=0.512 Sum_probs=38.3
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|-||++.-.++.+.||. .-.|..|+.+|+..+ ...|++|+.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQ-----HNVCKDCLDRSFRAQ----VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTS-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCC-----CcccHHHHHHHHhHC----cCCCCCCCccCCC
Confidence 346899999876667777763 347999999999843 3689999999865
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=92.81 E-value=0.018 Score=45.54 Aligned_cols=50 Identities=18% Similarity=0.460 Sum_probs=36.4
Q ss_pred CCCCCeeEEeccCC-----CCc--cccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETD-----GRD--FIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e-----~~~--LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+++...|-||++.- +.. ...|| . ...|..|+.+|++.+ ..|++|+.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~C--g---H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTEC--G---HVFCSQCLRDSLKNA-----NTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETT--S---BEEEHHHHHHHHHHC-----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCC--C---ChhhHHHHHHHHHcC-----CCCCCCCCcCCh
Confidence 45678899998641 122 34455 3 569999999999875 489999998864
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=92.32 E-value=0.048 Score=43.24 Aligned_cols=49 Identities=24% Similarity=0.531 Sum_probs=38.7
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|-||++.-.++...||. ...|..|+.+|++.++ ..|++|+.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCK-----HLFCRICILRCLKVMG----SYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCC-----CcccHHHHHHHHhHCc----CcCCCCCCCCCH
Confidence 347899999876667777763 4579999999998753 589999998765
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=92.18 E-value=0.043 Score=39.76 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=39.1
Q ss_pred CCCCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 26 AGPGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 26 ~~s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
...+....|.||++...+..+. ||.= ..+-.+|..+|.+.+ ..|++|+.++...++
T Consensus 2 ~~~~~~~~C~IC~~~~~~~~~~~~pCgH----~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 2 DCQNLLKPCSLCEKRPRDGNIIHGRTGH----LVTCFHCARRLKKAG-----ASCPICKKEIQLVIK 59 (63)
T ss_dssp -CGGGGSBCTTTSSSBSCEEEEETTEEE----EEECHHHHHHHHHTT-----CBCTTTCCBCCEEEE
T ss_pred CCCCcCCCCcccCCcCCCeEEEecCCCC----HhHHHHHHHHHHHhC-----CcCCCcCchhhceEE
Confidence 3445668899999876555544 8741 124689999998653 589999999875443
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=91.90 E-value=0.019 Score=48.10 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=38.6
Q ss_pred CCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 27 GPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
.-.+.-.|-||++.-.+|...||. ...++.|+.+|++.+ ...|++|+.+...
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~Cg-----H~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCG-----HRYCSFCLASILSSG----PQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHGGGS----CEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcCcEECCCC-----CccCHHHHHHHHhcC----CCCCCCCCCcccc
Confidence 345678999999865567776653 347899999999754 3589999987543
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=91.88 E-value=0.049 Score=45.99 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=38.8
Q ss_pred CCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 31 QIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 31 ~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
...|.||++.-.++.+.||. ...+..|+.+|+..+ ...|++|+.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECF-----HNVCKDCLQRSFKAQ----VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTS-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCC-----CchhHHHHHHHHHhC----CCcCCCCCccCCCC
Confidence 36899999876667887874 347899999999864 35899999998764
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=91.51 E-value=0.0084 Score=44.67 Aligned_cols=47 Identities=19% Similarity=0.601 Sum_probs=37.3
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcc-cchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKY-VHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~ky-VH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
+...|.||++...++...||. .. ....|+.+| ..|++|+.++...++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~---------~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCG-----HLVTCKQCAEAV---------DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTC-----CBCCCHHHHTTC---------SBCTTTCCBCSEEEE
T ss_pred cCCCCCCCCCCCCCEEEcCCC-----ChhHHHHhhhcC---------ccCCCcCcCccCcEE
Confidence 457899999877778888974 33 789999988 379999999876543
No 52
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=91.38 E-value=0.036 Score=43.50 Aligned_cols=48 Identities=15% Similarity=0.361 Sum_probs=37.5
Q ss_pred CCCeeEEeccCCCCcccc-ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIA-PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIs-PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|-||++.-.++... ||. ...|..|+.+|++.+ ..|++|+.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECL-----HSFCKTCIVRYLETS-----KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTC-----CEEEHHHHHHHHTSC-----SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCC-----ChhhHHHHHHHHHhC-----CcCcCCCccccc
Confidence 457899999865556665 774 457999999999764 589999998765
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=90.51 E-value=0.092 Score=38.10 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=37.2
Q ss_pred CCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 30 EQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
+...|.||++...+..+. ||.=. ..=.+|+.+|.+.+ ..|++|+.++...++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~----~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHL----MACFTCAKKLKKRN-----KPCPVCRQPIQMIVL 60 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEE----EECHHHHHHHHHTT-----CCCTTTCCCCCEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCCh----hhHHHHHHHHHHcC-----CcCCCcCcchhceEe
Confidence 446899999887666655 87411 12379999999753 479999999875443
No 54
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.19 E-value=0.22 Score=36.66 Aligned_cols=53 Identities=15% Similarity=0.464 Sum_probs=39.1
Q ss_pred CCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEee
Q 020734 26 AGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHV 91 (322)
Q Consensus 26 ~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~ 91 (322)
...++...|.||++...+....||.=. .+-..|+.+ ...|++|+.++...+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~----~~C~~C~~~---------~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHT----CLCDGCVKY---------FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBC----CSCTTHHHH---------CSSCTTTCCCCCCEECC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCCh----hhhHHHHhc---------CCCCCCCCcchhceEEe
Confidence 344466889999998878888998632 256688762 25899999998876553
No 55
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=88.63 E-value=0.039 Score=43.72 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=38.3
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...|.||++.-.++.+.||. ...|..|+.+|++.+ ...|++|+.++..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCN-----HTLCKPCFQSTVEKA----SLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTS-----CEECHHHHCCCCCTT----TSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCC-----CHHhHHHHHHHHhHC----cCCCCCCCcccCc
Confidence 346899999865667777763 458999999999653 3689999999875
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=87.59 E-value=0.23 Score=41.78 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=39.9
Q ss_pred CCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 26 AGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 26 ~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+...+.-.|-||++.-.+|...|| . .-....|+.+|++.++ ..|++|+.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~C--g---H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPC--G---HRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTT--S---CEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCC--C---CHHHHHHHHHHHHhCC----CCCCCCccCcch
Confidence 345566899999986666777664 2 4578999999998764 489999887653
No 57
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.39 E-value=0.5 Score=37.57 Aligned_cols=59 Identities=19% Similarity=0.496 Sum_probs=37.5
Q ss_pred ccccccCCCCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCc
Q 020734 20 SEIDLEAGPGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84 (322)
Q Consensus 20 ~e~~~e~~s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~ 84 (322)
.+.+.+...++...| ||.+.++..||. -|.|+ ..|.|..|+. +... ....+.|+.|...
T Consensus 25 ~~~~~~~d~~e~~yC-iC~~~~~g~MI~CD~~dC~--~~WfH~~CVg--l~~~-p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 25 DVLDMPVDPNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTK-PRGKWFCPRCSQE 85 (91)
T ss_dssp CCCSCCCCSCCCBCS-TTCCBCCSCCCCCSCSSCS--CCCCCSTTTT--CSSC-CCSSCCCTTTCCC
T ss_pred ccccCCcCCCCCcEE-ECCCCCCCCEeEecCCCCC--CCCEecccCC--cCcC-CCCCEECcCccCc
Confidence 335555556677888 998755556764 22243 2699999987 3322 2246889999753
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=84.27 E-value=0.65 Score=35.34 Aligned_cols=49 Identities=6% Similarity=-0.059 Sum_probs=38.8
Q ss_pred CCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 29 GEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
.+.-.|-||++--.+|.+.|| | .-.-+.|+.+|+... ..|++|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~c---G--htf~r~~I~~~l~~~-----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPS---G--TVMDRSIILRHLLNS-----PTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTT---S--CEEEHHHHHHHHHHC-----SBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCC---C--CEECHHHHHHHHhcC-----CCCCCCcCCCCh
Confidence 467899999886667899996 2 346799999999853 589999998764
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.19 E-value=0.11 Score=38.45 Aligned_cols=47 Identities=19% Similarity=0.580 Sum_probs=34.4
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeE
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRV 89 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~ 89 (322)
+...|.||++...++...||.=. .....|+.+ ...|++|+.++...+
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~----~~C~~C~~~---------~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHL----VTCKQCAEA---------VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCC----CBCHHHHHH---------CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCH----HHHHHHhhC---------CCCCccCCceecCcE
Confidence 45689999988777888898421 267899842 258999999886543
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=83.95 E-value=0.62 Score=36.65 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=39.0
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..++-.|-||++--.+|.+.||. | .-.-+.|+.+|+... ..|++|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG--~--htf~r~cI~~~l~~~-----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSS--R--VTVDRSTIARHLLSD-----QTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTT--C--CEEEHHHHHHHTTTS-----CBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCC--C--eEECHHHHHHHHHhC-----CCCCCCCCCCCh
Confidence 34668999998866678888865 1 235689999999852 489999998764
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.87 E-value=0.55 Score=41.42 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
+.-.|-||++--.+|.+.||. .-.-+.|+.+|+..++ ..|++|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~g-----h~f~~~~i~~~~~~~~----~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSG-----ITYDRKDIEEHLQRVG----HFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSC-----CEEETTHHHHHHHHTC----SSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCC-----CEECHHHHHHHHHHCC----CCCcCCCCCCch
Confidence 557899999876779999972 3356899999998764 249999998864
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.64 E-value=0.23 Score=34.77 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=35.0
Q ss_pred CCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 29 GEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
.+...|.||++.-.++.+.||. ...+..|+.+| ...|++|+.++.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~Cg-----H~fC~~Ci~~~--------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCL-----HTLCSGCLEAS--------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTS-----CCSBTTTCSSS--------SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCC-----CcccHHHHccC--------CCCCCcCCcEeecC
Confidence 4567899999876667888864 23678888762 36899999987753
No 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.47 E-value=0.19 Score=40.09 Aligned_cols=45 Identities=16% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCCeeEEeccCCCCcccc-ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLETDGRDFIA-PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIs-PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
+...|.||++.-.++.+. ||. ...++.|+.+|+. ..|++|+.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~Cg-----H~fC~~Ci~~~~~-------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCE-----HIFCSNCVSDCIG-------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSS-----CCBCTTTGGGGTT-------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCC-----CHHHHHHHHHHhc-------CCCcCCCCcCc
Confidence 458899999866667766 763 4578999999986 47999999974
No 64
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=74.64 E-value=0.65 Score=34.61 Aligned_cols=56 Identities=16% Similarity=0.341 Sum_probs=38.1
Q ss_pred cccCCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCc
Q 020734 23 DLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84 (322)
Q Consensus 23 ~~e~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~ 84 (322)
+.++++.....|.||.+++ .|+. |.+=-+..|..||.-.+.... ...+.|..|...
T Consensus 4 E~~~~~~~~~~C~vC~~~~--~ll~---Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 4 EGQQNLAPGARCGVCGDGT--DVLR---CTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp TTTTCCCTTCCCTTTSCCT--TCEE---CSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred ccccCCCCCCCcCCCCCCC--eEEE---CCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 4455666778899997543 3553 445558999999977765432 235899999753
No 65
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.53 E-value=1.2 Score=33.52 Aligned_cols=57 Identities=19% Similarity=0.479 Sum_probs=36.0
Q ss_pred ccccCCCCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCc
Q 020734 22 IDLEAGPGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84 (322)
Q Consensus 22 ~~~e~~s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~ 84 (322)
.+.+..+++...| ||.+.++..+|. -|.|+ ..|.|..|+. +... ....+.|+.|...
T Consensus 7 ~~~~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~--~~wfH~~Cvg--l~~~-p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 7 GDMPVDPNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTK-PRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCCCTTSCCCS-TTCCCSCSSEECCSCSSCS--CCCEETTTTT--CSSC-CSSCCCCTTTSSC
T ss_pred cccccCCCCCCEE-ECCCCCCCCEeEeeCCCCC--CccEecccCC--cCcC-CCCCEECCCCCcc
Confidence 4455556677888 898755456764 11243 2699999987 4332 2246889999653
No 66
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=73.51 E-value=1 Score=35.44 Aligned_cols=50 Identities=4% Similarity=-0.088 Sum_probs=39.2
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..+.-.|-||++--.+|.+.||. .-.-+.|+.+|+... ..|++|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cG-----htf~r~~I~~~l~~~-----~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSG-----TIMDRSIILRHLLNS-----PTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTT-----EEEEHHHHHHHTTSC-----SBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCC-----CEEchHHHHHHHHcC-----CCCCCCCCCCCh
Confidence 34678999998866678999962 346799999999742 589999998764
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=73.47 E-value=0.43 Score=45.79 Aligned_cols=48 Identities=23% Similarity=0.596 Sum_probs=37.7
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEe
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVH 90 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~ 90 (322)
+...|.||++...++...||.=. .....|+.+| ..|++|+.++...++
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~----~fC~~C~~~~---------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHL----VVCQECAPSL---------RKCPICRGIIKGTVR 341 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCE----EECTTTGGGC---------SBCTTTCCBCCEEEE
T ss_pred CCCCCCccCCcCCceEEcCCCCh----hHhHHHHhcC---------CcCCCCCCCccCeEE
Confidence 45899999987777888898532 2788999887 379999999886654
No 68
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=73.24 E-value=1.2 Score=40.54 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=35.8
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLR 88 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~ 88 (322)
..+.|-||++---.....| +|. .-.|..|+.+|++.++ ...|+.|+.+++..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~-~C~---~~~H~~C~~~~~~~~~---~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE-TCG---IRMHLPCVAKYFQSNA---EPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS-SSC---CEECHHHHHHHTTTCS---SCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccC-ccC---hHHHHHHHHHHHHhCC---CCCCCCCCCCCCCC
Confidence 5789999986211011111 154 5799999999997654 47899999987765
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=71.48 E-value=1 Score=33.92 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=36.2
Q ss_pred CCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEee
Q 020734 30 EQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHV 91 (322)
Q Consensus 30 e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~ 91 (322)
+...|.||++...++...||.=. ..=..|+.+| ..|++|+.++...++.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~----~~C~~C~~~~---------~~CP~Cr~~i~~~~~i 65 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHT----VCCESCAAQL---------QSCPVCRSRVEHVQHV 65 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBC----CBCHHHHTTC---------SBCTTTCCBCCEEEEC
T ss_pred CCCEeEEeCcccCcEEEECCCCH----HHHHHHHHhc---------CcCCCCCchhhCeEEE
Confidence 34689999988777888898532 1346787765 3799999999876653
No 70
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.96 E-value=3.2 Score=31.85 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCCCCCeeEEeccCCCCccccc-cccCCCCcccchhHHHHHHHHhc-CcCcccccc--CCCc
Q 020734 27 GPGEQIQCRICLETDGRDFIAP-CKCKGTSKYVHRECLDHWRAVRE-GFAFAHCTT--CKAP 84 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e~~~LIsP-C~CkGS~kyVH~~CL~~Wi~~s~-~~~~~~CEl--CK~~ 84 (322)
+..+.-.|-||++--.+|.+.| |. .-.-+.|+.+|+..++ +.....|++ |+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456688999987656788886 63 3356999999998752 122468999 8876
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.67 E-value=3.3 Score=31.42 Aligned_cols=56 Identities=25% Similarity=0.535 Sum_probs=38.0
Q ss_pred CCCCCCeeEEeccCC-CCccc--cccccCCCCcccchhHHHHHHHHh--cC-cCcccccc--CCCceee
Q 020734 27 GPGEQIQCRICLETD-GRDFI--APCKCKGTSKYVHRECLDHWRAVR--EG-FAFAHCTT--CKAPYHL 87 (322)
Q Consensus 27 ~s~e~~~CRIC~e~e-~~~LI--sPC~CkGS~kyVH~~CL~~Wi~~s--~~-~~~~~CEl--CK~~Y~~ 87 (322)
|+++...|-||++.- +...+ .||. ...-++||.++++.+ ++ .....|+. |+..+.+
T Consensus 1 g~~~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~ 64 (94)
T 1wim_A 1 GSSGSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64 (94)
T ss_dssp CCCSBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEE
T ss_pred CCCCCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCcc
Confidence 345678899999753 22333 3675 347789999999865 22 23479999 9998543
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=60.51 E-value=3.6 Score=36.13 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
..+.-.|-||++--.+|.+.||. .-.=+.|+.+|+..++ ..|++|+.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~G-----htfer~~I~~~l~~~~----~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSG-----ITYDRKDIEEHLQRVG----HFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTS-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCC-----CEECHHHHHHHHHhCC----CCCCCCcCCCCh
Confidence 34667899998765678999862 3466899999998754 269999998864
No 73
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.99 E-value=0.76 Score=33.41 Aligned_cols=54 Identities=19% Similarity=0.514 Sum_probs=29.8
Q ss_pred ccCCCCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCC
Q 020734 24 LEAGPGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKA 83 (322)
Q Consensus 24 ~e~~s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~ 83 (322)
.+..+++...| ||.+.+++.+|. -|.|+ .++.|..|+. +.... ...+.|+.|..
T Consensus 3 ~~~d~~e~~~C-~C~~~~~g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 3 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCS--IEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp ------CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred cccCCCCCCEE-ECCCcCCCCEEEeCCCCCC--CceEehhcCC--CCcCC-CCCEECcCccC
Confidence 34445566778 898755556664 12233 2799999987 43322 23577877754
No 74
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=59.14 E-value=9.1 Score=25.48 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 020734 240 PLLFIMALIVLGLFTVIGIF 259 (322)
Q Consensus 240 ~~~~~~~~~~~~~~~~~g~~ 259 (322)
-+|++++++++++-.|+|.+
T Consensus 12 rLlivVvVvVlvVvVivGaL 31 (35)
T 1spf_A 12 RLLVVVVVVVLVVVVIVGAL 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeehhhHHHHHHHH
Confidence 35677777777776777643
No 75
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=58.07 E-value=2.3 Score=33.71 Aligned_cols=59 Identities=17% Similarity=0.382 Sum_probs=31.8
Q ss_pred CccccccCCCCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCcccccc-CCC
Q 020734 19 PSEIDLEAGPGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTT-CKA 83 (322)
Q Consensus 19 ~~e~~~e~~s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CEl-CK~ 83 (322)
++.++.+++.++...| ||.+.+.+++|. -|.|. ..|.|..|+. +... ....+.|+. |..
T Consensus 14 ~~~~~~~~~~~~~~yC-iC~~~~~g~MI~CD~c~C~--~eWfH~~CVg--l~~~-p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 14 QGDVTEGNNNQEEVYC-FCRNVSYGPMVACDNPACP--FEWFHYGCVG--LKQA-PKGKWYCSKDCKE 75 (90)
T ss_dssp ----------CCSCCS-TTTCCCSSSEECCCSSSCS--CSCEETTTSS--CSSC-TTSCCCSSHHHHH
T ss_pred CCCcCCCCCCCCCcEE-EeCCCCCCCEEEecCCCCc--cccCcCccCC--CCcC-CCCCccCChhhcc
Confidence 3445555556677888 998754456764 23344 3799999985 3222 123688998 863
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.97 E-value=7.8 Score=31.15 Aligned_cols=50 Identities=26% Similarity=0.588 Sum_probs=35.6
Q ss_pred CCCeeEEeccC----CCCcccccc-ccCCCCcccchhHHHHHHHHhcCcCccccccCCCcee
Q 020734 30 EQIQCRICLET----DGRDFIAPC-KCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYH 86 (322)
Q Consensus 30 e~~~CRIC~e~----e~~~LIsPC-~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~ 86 (322)
...+|.||-+. .+.++.--| .|. --|=+.|++.=+++- ...|..||++|.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErkeG----~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERREG----TQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHHTS----CSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHhcc----CccccccCCccc
Confidence 55899999763 233343334 343 458999999887765 379999999997
No 77
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.29 E-value=49 Score=23.07 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020734 247 LIVLGLFTVIGIFYSVL 263 (322)
Q Consensus 247 ~~~~~~~~~~g~~~~~~ 263 (322)
+|-++++.|+|+..+++
T Consensus 18 vVGvll~vi~~l~~~~~ 34 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33344555555555543
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=39.06 E-value=14 Score=30.02 Aligned_cols=62 Identities=19% Similarity=0.459 Sum_probs=41.3
Q ss_pred CccccccCCCCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceeeeEee
Q 020734 19 PSEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHV 91 (322)
Q Consensus 19 ~~e~~~e~~s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~~~~~ 91 (322)
..|+.-.++--...-|+.|+..+. .||. |. -.|.=..||..-++.+ ..|+||+++.+.+.++
T Consensus 16 ra~~~~d~s~~G~~nCKsCWf~~k-~LV~---C~--dHYLCl~CLtlmL~~S-----drCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 16 RASLIPDATHLGPQFCKSCWFENK-GLVE---CN--NHYLCLNCLTLLLSVS-----NRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCSCSSSCCCSCCCCCCSSCSCCS-SEEE---CS--SCEEEHHHHHHTCSSS-----SEETTTTEECCCCSCT
T ss_pred cceecCCccccCcccChhhccccC-Ceee---ec--chhhHHHHHHHHHhhc-----cCCcccCCcCCcceec
Confidence 345544344335577999986554 3553 32 3688888987777665 4899999999877654
No 79
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.00 E-value=3.4 Score=29.88 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCC
Q 020734 28 PGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKA 83 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~ 83 (322)
+++...| ||.+.+++.+|. -|.|+ ..|.|.+|+. +.... ...+.|+.|..
T Consensus 6 ~~e~~yC-~C~~~~~g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSYGEMIGCDNPDCP--IEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCCCCeeEeeCCCCC--CCCEecccCC--cccCC-CCCEECcCccC
Confidence 4456677 898755456664 12243 2699999987 33322 23577877753
No 80
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=34.71 E-value=25 Score=30.55 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=33.8
Q ss_pred HHHHHHH-HHHHHHHhhh-hhhhhhhccccccceeecCCCCCC-CCCCCCCC--CChHHHHHhhh
Q 020734 259 FYSVLVA-TMVGQRIWQR-HYHILAKRMLTKEYVVEDVDGEMT-GSDWSPAP--LPPEHVQQLKS 318 (322)
Q Consensus 259 ~~~~~~~-~~~~~ri~~r-~~~il~k~~~tk~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~ 318 (322)
.||.+++ ++=..++|++ |=+=+.|-.-.-..|..+.||.++ +|+|.||. +-.|-.+|+|.
T Consensus 105 ~~g~~~~~g~~~~~~~~eV~~sNmsKl~~dgk~i~~~~dgKvlK~~~y~~pd~~i~~~l~rQ~~~ 169 (171)
T 3nl9_A 105 IMGSFVEAGLEPGPLFEIVQQANMAKLGPDGQPIFRESDQKVMKPDGWLPPEPQLEAEVVRQMKE 169 (171)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHTTCCTTSSCCBCTTTTCBCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccccCCCCCeeeCCCCCcccCCCCCCCcCHHHHHHHHHHHhc
Confidence 3444433 2223456654 334455533333455555689887 67899994 55666677663
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=34.65 E-value=11 Score=27.70 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=33.0
Q ss_pred CCCCCeeEEeccCCC-CccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCce
Q 020734 28 PGEQIQCRICLETDG-RDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPY 85 (322)
Q Consensus 28 s~e~~~CRIC~e~e~-~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y 85 (322)
.++...|.||...++ +.+|. |.+=-++.|..|+.--..... ...+.|+.|....
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~-~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPE-EMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCS-SSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCC-CCCEEChhccCch
Confidence 345577999987543 34664 444458999999753221111 1357898886543
No 82
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.86 E-value=18 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020734 243 FIMALIVLGLFTVIGIFYSVLV 264 (322)
Q Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~ 264 (322)
++..++.+.+|.|+|+..|+++
T Consensus 10 IaagVvglll~vii~l~~~~~i 31 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHH
T ss_pred eHHHHHHHHHHHHHHHHhheEE
Confidence 4444555666677777766653
No 83
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.30 E-value=19 Score=33.74 Aligned_cols=51 Identities=14% Similarity=0.365 Sum_probs=36.8
Q ss_pred CCCCeeEEeccCCCCcccc-ccccCCCCcccchhHHHHHHHHhcCcCcccccc--CCCceee
Q 020734 29 GEQIQCRICLETDGRDFIA-PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTT--CKAPYHL 87 (322)
Q Consensus 29 ~e~~~CRIC~e~e~~~LIs-PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CEl--CK~~Y~~ 87 (322)
...-.|-||++--.+|..+ .|. .-.=+.|+.+|+..++ ...|++ |+.++..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CG-----HsFcR~cI~~~~~~~~---~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCN-----HVFDRDGIQNYLQGYT---TRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSC-----CEEEHHHHHHHSTTCS---CEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCC-----CcccHHHHHHHHHhCC---CCCCCcccccCcCch
Confidence 3557899998765567764 553 2355789999997643 478999 9997764
No 84
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=30.77 E-value=78 Score=29.18 Aligned_cols=35 Identities=11% Similarity=0.352 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccccccceeecCCCC
Q 020734 259 FYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGE 297 (322)
Q Consensus 259 ~~~~~~~~~~~~ri~~r~~~il~k~~~tk~~~~~~~~~~ 297 (322)
..+++++.++...++.||. ||.+.+.-.+++++.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 439 (444)
T 3gia_A 405 IIATFIGVLIFEIIYRKVT----KRTFSNNMYVKSLESS 439 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CCCCCGGGTTTC----
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCcCceeeeehhhc
Confidence 3445566677777776653 3444443345666655
No 85
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=30.60 E-value=9.1 Score=27.91 Aligned_cols=54 Identities=19% Similarity=0.501 Sum_probs=29.9
Q ss_pred ccCCCCCCCeeEEeccCCCCcccc--ccccCCCCcccchhHHHHHHHHhcCcCccccccCCC
Q 020734 24 LEAGPGEQIQCRICLETDGRDFIA--PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKA 83 (322)
Q Consensus 24 ~e~~s~e~~~CRIC~e~e~~~LIs--PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~ 83 (322)
.+..+++...| ||.+.++..+|. -|.|+ .+|.|.+|+. +... ....+.|+.|..
T Consensus 4 ~~~d~~e~~yC-~C~~~~~g~MI~CD~c~C~--~~WfH~~Cvg--l~~~-p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 4 FAIDPNEPTYC-LCNQVSYGEMIGCDNEQCP--IEWFHFSCVS--LTYK-PKGKWYCPKCRG 59 (62)
T ss_dssp ------CCEET-TTTEECCSEEEECSCTTCS--SCEEETGGGT--CSSC-CSSCCCCHHHHT
T ss_pred cccCCCCCcEE-ECCCCCCCCeeeeeCCCCC--cccEecccCC--cCcC-CCCCEECcCccc
Confidence 33445566777 898754456664 22243 3899999986 3322 223577877754
No 86
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.04 E-value=29 Score=25.94 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=36.1
Q ss_pred ccccccCCCCCCCeeEEeccC-CCCcccccc--ccCCCCcccchhHHHHHHHHh----cCcCccccccCCC
Q 020734 20 SEIDLEAGPGEQIQCRICLET-DGRDFIAPC--KCKGTSKYVHRECLDHWRAVR----EGFAFAHCTTCKA 83 (322)
Q Consensus 20 ~e~~~e~~s~e~~~CRIC~e~-e~~~LIsPC--~CkGS~kyVH~~CL~~Wi~~s----~~~~~~~CElCK~ 83 (322)
+|.|++..+++...| ||... ++..+|.== .|+ .|.|..|+.-=-... .......|+.|+.
T Consensus 5 ~~~dd~~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 5 SSGEDPFQPEIKVRC-VCGNSLETDSMIQCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCSSSCCCCCCC-SSCCCCCCSCEEECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred cccccccCCCCCEEe-ECCCcCCCCCEEEECCccCC---ccccCEEEccccccccccccCCCCEECCCCCc
Confidence 356666666778889 89875 444555422 466 699999963211110 0113578888864
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.04 E-value=30 Score=29.00 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=32.6
Q ss_pred CCCCCeeEEeccCCCCccccccccCCCCcccchhHHHHHH------HHhcCcCccccccCCC
Q 020734 28 PGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWR------AVREGFAFAHCTTCKA 83 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~CkGS~kyVH~~CL~~Wi------~~s~~~~~~~CElCK~ 83 (322)
++.+..|++|.++. +|+ -|++--+--|.+||.+=+ +.......+.|..|.-
T Consensus 54 Dg~~~~C~vC~dGG--~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG--NLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS--EEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC--eeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 55667899997654 354 234445899999998742 2211223688999943
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=28.26 E-value=26 Score=26.17 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCCCCCeeEEeccC---CCCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCC
Q 020734 27 GPGEQIQCRICLET---DGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKA 83 (322)
Q Consensus 27 ~s~e~~~CRIC~e~---e~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~ 83 (322)
+..+...|.||.++ +++.++. |++=-+.+|+.||.-=. .....+.|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 45567889999864 3355553 33444799999985311 1122577877754
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.66 E-value=33 Score=27.31 Aligned_cols=35 Identities=23% Similarity=0.621 Sum_probs=24.7
Q ss_pred CCCCCeeEEeccCCCCccccccc-cCCCCcccchhHHHHH
Q 020734 28 PGEQIQCRICLETDGRDFIAPCK-CKGTSKYVHRECLDHW 66 (322)
Q Consensus 28 s~e~~~CRIC~e~e~~~LIsPC~-CkGS~kyVH~~CL~~W 66 (322)
..+.+.|-||..-+ +.-+.||+ |. |--|..||++=
T Consensus 12 ~~~D~~C~VC~~~t-~~~l~pCRvC~---RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWT-AESLFPCRVCT---RVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCC-SSCCSSCSSSS---SCCCHHHHHHH
T ss_pred CCCCcccCcccccc-ccceecccccc---ccccHhhcccc
Confidence 33668899996433 23567886 54 88999999875
No 90
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=27.45 E-value=73 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHH
Q 020734 254 TVIGIFYSVLVA 265 (322)
Q Consensus 254 ~~~g~~~~~~~~ 265 (322)
+++|++.||++-
T Consensus 17 ~LvGla~Gf~LL 28 (39)
T 1q90_M 17 TLVGLAIGFVLL 28 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 678999999863
No 91
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=26.95 E-value=78 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q 020734 254 TVIGIFYSVLV 264 (322)
Q Consensus 254 ~~~g~~~~~~~ 264 (322)
+++|++.||++
T Consensus 16 vLvGla~Gf~L 26 (35)
T 1vf5_F 16 IFVGWGLGVLL 26 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67899999976
No 92
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=25.79 E-value=64 Score=22.55 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 020734 249 VLGLFTVIGIFYSVL 263 (322)
Q Consensus 249 ~~~~~~~~g~~~~~~ 263 (322)
+|++.++.|+.|+++
T Consensus 29 aLvil~VAGLiysm~ 43 (46)
T 1pfi_A 29 ALVILAVAGLIYSML 43 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344447889999875
No 93
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=25.04 E-value=31 Score=24.59 Aligned_cols=46 Identities=11% Similarity=0.264 Sum_probs=33.0
Q ss_pred CeeEEeccCCCCcccc-ccccCCCCcccchhHHHHHHHHhcCcCccccccCCCceee
Q 020734 32 IQCRICLETDGRDFIA-PCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHL 87 (322)
Q Consensus 32 ~~CRIC~e~e~~~LIs-PC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~Y~~ 87 (322)
-.|-|+++--.+|.+. ++. .-.=+.|+++|++.++ .|++.+.+...
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG-----~~yer~~I~~~l~~~~-----~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSR-----TIFEKSLLEQYVKDTG-----NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTT-----EEEEHHHHHHHHHHHS-----BCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCC-----cEEcHHHHHHHHHhCC-----CCcCCcCCCCh
Confidence 4677887655567777 432 3467899999998753 49999987754
No 94
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=25.02 E-value=28 Score=26.55 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 020734 262 VLVATMVGQRIWQRHYHILA 281 (322)
Q Consensus 262 ~~~~~~~~~ri~~r~~~il~ 281 (322)
.|-.+-.+||+|+||.+=|+
T Consensus 48 ~L~G~~kaqrlF~rHi~kLk 67 (69)
T 2k85_A 48 YLEGTQKAKKLFLQHIHRLK 67 (69)
T ss_dssp HHTCHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHhh
Confidence 45567889999999998876
No 95
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.45 E-value=57 Score=24.94 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 020734 266 TMVGQRIW 273 (322)
Q Consensus 266 ~~~~~ri~ 273 (322)
+++.--||
T Consensus 25 Gllllliw 32 (79)
T 2knc_B 25 GLAALLIW 32 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333344
No 96
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=23.11 E-value=41 Score=21.14 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhhh
Q 020734 264 VATMVGQRIWQRHYH 278 (322)
Q Consensus 264 ~~~~~~~ri~~r~~~ 278 (322)
.|.+++||-|.+|.-
T Consensus 7 ~aA~vIQrA~R~yl~ 21 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLL 21 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467889999999853
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.10 E-value=45 Score=25.68 Aligned_cols=50 Identities=22% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCCCeeEEeccCC---CCccccccccCCCCcccchhHHHHHHHHhcCcCccccccCCCc
Q 020734 29 GEQIQCRICLETD---GRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAP 84 (322)
Q Consensus 29 ~e~~~CRIC~e~e---~~~LIsPC~CkGS~kyVH~~CL~~Wi~~s~~~~~~~CElCK~~ 84 (322)
.+...|.||.+++ ++.|+. |.+--+.+|+.|+.-=. .....+.|..|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEE---CSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEE---CCCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 4568899998642 344553 33444789999985321 11235778888653
No 98
>2k4n_A Protein PF0246; beta-sheet, alpha-helix, mobIle loop, structural genomics, PSI-2, protein structure initiative; NMR {Pyrococcus furiosus}
Probab=20.29 E-value=35 Score=27.60 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=16.1
Q ss_pred cccceeecC---CCCCCCCCCCCCCCChH
Q 020734 286 TKEYVVEDV---DGEMTGSDWSPAPLPPE 311 (322)
Q Consensus 286 tk~~~~~~~---~~~~~~~~~~~~~~~~~ 311 (322)
-|-||+||- .|+ |.||.+--.
T Consensus 43 lktyviedeivepgs-----ydppemkyt 66 (111)
T 2k4n_A 43 LKTYVIEDEIVEPGE-----YDPPEMKYT 66 (111)
T ss_dssp CEEEEEEEEECCCCC-----CSSCTTSCC
T ss_pred heeeeeeeeecCCCC-----CCCcccccc
Confidence 377999996 677 999987543
Done!