Query 020735
Match_columns 322
No_of_seqs 267 out of 2113
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.4 4.1E-12 8.8E-17 123.8 13.6 119 173-319 334-452 (966)
2 PRK10370 formate-dependent nit 99.4 2.5E-11 5.3E-16 106.5 17.5 120 174-321 54-176 (198)
3 PRK15359 type III secretion sy 99.4 6.8E-12 1.5E-16 104.4 12.1 98 212-321 27-124 (144)
4 KOG4626 O-linked N-acetylgluco 99.3 2.4E-11 5.2E-16 118.5 15.4 120 173-320 368-487 (966)
5 COG3063 PilF Tfp pilus assembl 99.3 2.9E-11 6.4E-16 105.7 12.7 127 168-320 44-170 (250)
6 TIGR02552 LcrH_SycD type III s 99.3 7.3E-11 1.6E-15 96.1 12.5 102 208-321 16-117 (135)
7 PRK15363 pathogenicity island 99.3 1.2E-10 2.6E-15 97.2 12.8 102 206-319 32-133 (157)
8 PRK11189 lipoprotein NlpI; Pro 99.2 1.8E-10 3.8E-15 107.2 15.2 124 174-321 41-164 (296)
9 TIGR02521 type_IV_pilW type IV 99.2 4.1E-10 8.9E-15 98.0 15.1 120 174-319 80-199 (234)
10 PF13424 TPR_12: Tetratricopep 99.2 2.6E-10 5.5E-15 84.3 10.1 74 248-321 4-78 (78)
11 KOG0553 TPR repeat-containing 99.2 2.5E-10 5.4E-15 103.4 10.9 104 205-320 77-180 (304)
12 TIGR00990 3a0801s09 mitochondr 99.1 6.8E-10 1.5E-14 113.2 15.1 99 210-320 400-498 (615)
13 TIGR00990 3a0801s09 mitochondr 99.1 8.2E-10 1.8E-14 112.6 15.2 131 163-321 335-465 (615)
14 KOG1130 Predicted G-alpha GTPa 99.1 1.8E-10 3.8E-15 108.1 8.7 113 208-320 234-346 (639)
15 KOG0553 TPR repeat-containing 99.1 1.2E-09 2.5E-14 99.1 13.6 124 155-306 77-200 (304)
16 KOG1130 Predicted G-alpha GTPa 99.1 7.2E-10 1.6E-14 104.0 12.3 138 174-321 170-307 (639)
17 KOG1840 Kinesin light chain [C 99.1 7.9E-09 1.7E-13 101.8 19.8 139 174-320 256-398 (508)
18 PF14938 SNAP: Soluble NSF att 99.1 7.1E-09 1.5E-13 95.8 18.3 148 160-318 35-184 (282)
19 KOG1155 Anaphase-promoting com 99.1 1.1E-09 2.5E-14 104.0 12.7 100 208-319 397-496 (559)
20 CHL00033 ycf3 photosystem I as 99.1 4.9E-09 1.1E-13 89.1 14.8 108 204-320 30-144 (168)
21 KOG1155 Anaphase-promoting com 99.0 3.3E-09 7.3E-14 100.8 13.5 118 174-319 345-462 (559)
22 KOG1126 DNA-binding cell divis 99.0 3.8E-10 8.2E-15 111.1 7.2 116 174-317 436-551 (638)
23 PLN03088 SGT1, suppressor of 99.0 2.6E-09 5.6E-14 102.0 12.6 98 212-321 5-102 (356)
24 PF13424 TPR_12: Tetratricopep 99.0 5.1E-09 1.1E-13 77.3 11.4 73 208-280 4-77 (78)
25 PRK02603 photosystem I assembl 99.0 1.1E-08 2.4E-13 87.4 14.6 107 203-318 29-142 (172)
26 TIGR02521 type_IV_pilW type IV 99.0 1.3E-08 2.8E-13 88.4 15.3 98 209-318 135-232 (234)
27 cd00189 TPR Tetratricopeptide 99.0 3.2E-09 6.9E-14 78.0 9.6 98 211-320 2-99 (100)
28 PRK12370 invasion protein regu 99.0 4.3E-09 9.4E-14 106.1 13.4 95 211-317 340-434 (553)
29 PRK09782 bacteriophage N4 rece 99.0 5.3E-09 1.2E-13 111.1 14.4 101 209-321 609-709 (987)
30 PRK15359 type III secretion sy 99.0 5.9E-09 1.3E-13 86.7 11.8 109 166-302 31-139 (144)
31 KOG1173 Anaphase-promoting com 99.0 3.7E-09 8.1E-14 102.6 11.7 125 175-321 396-521 (611)
32 KOG1840 Kinesin light chain [C 99.0 4.3E-08 9.3E-13 96.7 19.4 138 174-320 340-481 (508)
33 PRK12370 invasion protein regu 99.0 7.4E-09 1.6E-13 104.4 14.1 100 208-318 371-470 (553)
34 TIGR02795 tol_pal_ybgF tol-pal 99.0 1E-08 2.2E-13 80.8 11.8 106 210-321 3-108 (119)
35 PF13414 TPR_11: TPR repeat; P 99.0 4.6E-09 1E-13 75.6 8.8 66 248-319 2-68 (69)
36 PRK11189 lipoprotein NlpI; Pro 99.0 1.5E-08 3.2E-13 94.3 14.5 128 162-318 67-194 (296)
37 PF12895 Apc3: Anaphase-promot 99.0 7.5E-09 1.6E-13 77.7 9.9 84 221-315 1-84 (84)
38 KOG1125 TPR repeat-containing 98.9 9.9E-10 2.1E-14 106.8 5.8 103 207-321 428-530 (579)
39 PRK10803 tol-pal system protei 98.9 6.7E-07 1.4E-11 81.8 24.1 106 210-321 143-249 (263)
40 COG3063 PilF Tfp pilus assembl 98.9 1.2E-08 2.7E-13 89.4 11.8 100 206-317 32-131 (250)
41 PF09976 TPR_21: Tetratricopep 98.9 1.6E-07 3.4E-12 78.0 18.0 99 208-316 47-145 (145)
42 PRK15179 Vi polysaccharide bio 98.9 2.1E-08 4.6E-13 102.9 14.7 120 173-320 100-219 (694)
43 KOG1126 DNA-binding cell divis 98.9 4.5E-09 9.7E-14 103.7 9.2 119 175-321 471-589 (638)
44 PRK15174 Vi polysaccharide exp 98.9 2.1E-08 4.5E-13 103.1 14.1 96 211-318 286-381 (656)
45 PF14938 SNAP: Soluble NSF att 98.9 4.2E-08 9E-13 90.7 14.2 116 205-321 30-147 (282)
46 TIGR03302 OM_YfiO outer membra 98.9 5.1E-08 1.1E-12 87.0 14.4 141 161-320 35-197 (235)
47 PRK15174 Vi polysaccharide exp 98.9 3.6E-08 7.8E-13 101.4 15.1 124 169-320 222-349 (656)
48 PF13414 TPR_11: TPR repeat; P 98.8 1.2E-08 2.5E-13 73.4 7.4 65 208-278 2-67 (69)
49 KOG1941 Acetylcholine receptor 98.8 3.4E-07 7.4E-12 85.1 18.7 136 174-319 137-276 (518)
50 PRK11447 cellulose synthase su 98.8 4.9E-08 1.1E-12 106.4 15.6 126 174-321 284-417 (1157)
51 PRK11788 tetratricopeptide rep 98.8 2.2E-07 4.8E-12 88.8 16.3 101 208-320 179-280 (389)
52 PRK11788 tetratricopeptide rep 98.8 5.9E-07 1.3E-11 85.8 18.9 106 208-320 106-211 (389)
53 PLN03088 SGT1, suppressor of 98.8 8.2E-08 1.8E-12 91.6 12.8 114 162-303 5-118 (356)
54 PRK09782 bacteriophage N4 rece 98.8 1.6E-07 3.5E-12 99.9 15.3 119 174-321 557-675 (987)
55 PRK11447 cellulose synthase su 98.7 1.4E-07 3E-12 103.0 15.1 125 174-320 366-526 (1157)
56 KOG0547 Translocase of outer m 98.7 5.6E-08 1.2E-12 93.2 10.4 120 174-321 375-494 (606)
57 PF13432 TPR_16: Tetratricopep 98.7 5E-08 1.1E-12 69.3 7.2 64 253-322 1-64 (65)
58 TIGR02917 PEP_TPR_lipo putativ 98.7 2E-07 4.3E-12 96.8 14.4 99 209-320 770-868 (899)
59 PRK15179 Vi polysaccharide bio 98.7 3.7E-07 8E-12 93.8 15.7 98 208-317 85-182 (694)
60 COG1729 Uncharacterized protei 98.7 1.6E-07 3.4E-12 84.7 10.9 103 212-320 144-246 (262)
61 TIGR02917 PEP_TPR_lipo putativ 98.7 2.3E-07 5E-12 96.4 13.8 115 174-317 785-899 (899)
62 TIGR03302 OM_YfiO outer membra 98.7 2.7E-07 5.8E-12 82.3 11.5 108 208-321 32-147 (235)
63 PRK15363 pathogenicity island 98.6 5.8E-07 1.3E-11 75.2 12.4 102 157-280 33-134 (157)
64 PRK15331 chaperone protein Sic 98.6 2.7E-07 5.8E-12 77.6 10.3 104 203-318 31-134 (165)
65 COG5010 TadD Flp pilus assembl 98.6 1.1E-06 2.5E-11 78.4 14.6 96 210-317 101-196 (257)
66 KOG1173 Anaphase-promoting com 98.6 2.1E-07 4.6E-12 90.6 10.8 127 174-322 361-488 (611)
67 COG5010 TadD Flp pilus assembl 98.6 6.6E-07 1.4E-11 79.9 13.1 125 161-313 102-226 (257)
68 PLN02789 farnesyltranstransfer 98.6 1.2E-06 2.5E-11 82.4 15.6 118 174-319 52-172 (320)
69 COG4235 Cytochrome c biogenesi 98.6 5.8E-07 1.3E-11 82.0 13.0 119 175-321 138-259 (287)
70 PF13432 TPR_16: Tetratricopep 98.6 1.4E-07 3E-12 67.0 6.9 60 213-278 1-60 (65)
71 PF13429 TPR_15: Tetratricopep 98.6 1.9E-07 4.1E-12 85.8 9.6 118 174-319 161-278 (280)
72 KOG0543 FKBP-type peptidyl-pro 98.6 2.4E-07 5.3E-12 87.3 9.9 104 212-321 211-323 (397)
73 PRK10049 pgaA outer membrane p 98.6 1.1E-06 2.3E-11 92.1 15.9 96 211-319 51-146 (765)
74 PF13429 TPR_15: Tetratricopep 98.6 3.6E-07 7.8E-12 84.0 10.9 103 208-322 145-247 (280)
75 KOG0548 Molecular co-chaperone 98.6 1.1E-06 2.4E-11 85.2 13.9 100 209-320 358-457 (539)
76 KOG0547 Translocase of outer m 98.6 1E-06 2.2E-11 84.7 13.3 125 174-320 409-568 (606)
77 KOG0550 Molecular chaperone (D 98.5 4.1E-07 9E-12 85.8 9.3 134 174-319 218-351 (486)
78 PF12688 TPR_5: Tetratrico pep 98.5 5E-06 1.1E-10 66.9 14.3 100 211-316 3-102 (120)
79 KOG2002 TPR-containing nuclear 98.5 4.5E-07 9.7E-12 93.0 9.5 122 174-321 627-748 (1018)
80 PRK10049 pgaA outer membrane p 98.5 3.9E-06 8.5E-11 87.9 16.6 136 174-322 325-460 (765)
81 KOG0543 FKBP-type peptidyl-pro 98.5 2.9E-06 6.3E-11 80.2 13.5 152 154-318 203-355 (397)
82 KOG2003 TPR repeat-containing 98.5 1.3E-06 2.8E-11 83.3 10.8 103 208-322 489-591 (840)
83 KOG4234 TPR repeat-containing 98.4 3.2E-06 6.9E-11 73.0 11.8 103 211-320 97-199 (271)
84 cd05804 StaR_like StaR_like; a 98.4 2.1E-06 4.5E-11 81.1 11.4 102 208-317 113-214 (355)
85 TIGR02552 LcrH_SycD type III s 98.4 5E-06 1.1E-10 67.4 12.0 90 167-278 25-114 (135)
86 KOG4555 TPR repeat-containing 98.4 8.4E-06 1.8E-10 65.9 12.1 100 211-318 45-144 (175)
87 KOG1129 TPR repeat-containing 98.4 9.3E-06 2E-10 74.9 13.8 138 174-320 305-460 (478)
88 PRK10370 formate-dependent nit 98.4 3E-06 6.6E-11 74.2 9.9 88 222-321 52-142 (198)
89 PF13512 TPR_18: Tetratricopep 98.3 9.1E-06 2E-10 66.9 11.9 107 209-321 10-131 (142)
90 PF13525 YfiO: Outer membrane 98.3 8E-06 1.7E-10 71.8 12.2 108 208-321 4-122 (203)
91 PRK14720 transcript cleavage f 98.3 5.4E-06 1.2E-10 86.6 12.5 122 173-319 45-179 (906)
92 KOG2003 TPR repeat-containing 98.3 2.1E-06 4.6E-11 81.9 8.7 100 208-319 523-622 (840)
93 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 2.3E-06 5.1E-11 82.4 9.1 64 248-317 74-140 (453)
94 PF12895 Apc3: Anaphase-promot 98.3 7.2E-06 1.6E-10 61.3 9.8 81 174-275 4-84 (84)
95 PRK10866 outer membrane biogen 98.3 1.6E-05 3.4E-10 71.9 13.7 107 209-321 32-156 (243)
96 cd05804 StaR_like StaR_like; a 98.3 1.1E-05 2.4E-10 76.2 12.7 122 174-320 58-179 (355)
97 TIGR00540 hemY_coli hemY prote 98.3 6.4E-05 1.4E-09 73.1 18.3 117 174-318 99-216 (409)
98 PRK02603 photosystem I assembl 98.3 1.6E-05 3.6E-10 67.7 12.5 78 240-320 26-103 (172)
99 PLN02789 farnesyltranstransfer 98.2 2.4E-05 5.2E-10 73.6 13.9 119 175-321 88-215 (320)
100 KOG1129 TPR repeat-containing 98.2 3.9E-06 8.4E-11 77.3 8.2 125 174-317 271-423 (478)
101 PRK04841 transcriptional regul 98.2 5E-05 1.1E-09 80.7 18.0 113 208-320 490-604 (903)
102 PRK10153 DNA-binding transcrip 98.2 1.6E-05 3.6E-10 79.4 13.4 119 175-320 358-484 (517)
103 COG4783 Putative Zn-dependent 98.2 2.5E-05 5.4E-10 75.4 13.7 98 208-317 339-436 (484)
104 KOG1125 TPR repeat-containing 98.2 7.7E-06 1.7E-10 80.1 10.3 115 174-310 445-563 (579)
105 COG2956 Predicted N-acetylgluc 98.2 0.00033 7.2E-09 64.7 20.2 101 209-320 180-280 (389)
106 PF13371 TPR_9: Tetratricopept 98.2 5.2E-06 1.1E-10 60.0 7.0 61 255-321 1-61 (73)
107 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.8E-05 3.9E-10 62.1 10.6 97 166-278 9-105 (119)
108 CHL00033 ycf3 photosystem I as 98.2 6E-05 1.3E-09 63.9 14.5 97 167-282 43-146 (168)
109 PRK10866 outer membrane biogen 98.2 0.00014 3E-09 65.8 17.7 143 162-320 35-206 (243)
110 PRK04841 transcriptional regul 98.2 7.9E-05 1.7E-09 79.3 18.4 135 174-319 506-642 (903)
111 PRK14574 hmsH outer membrane p 98.2 1.6E-05 3.4E-10 83.4 12.6 101 208-321 101-201 (822)
112 KOG3060 Uncharacterized conser 98.2 6.2E-05 1.3E-09 67.3 14.1 119 174-320 101-222 (289)
113 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.9E-05 1.3E-09 72.7 15.2 91 211-313 202-292 (395)
114 KOG2076 RNA polymerase III tra 98.2 4.4E-05 9.6E-10 78.1 14.9 135 158-320 138-272 (895)
115 KOG2002 TPR-containing nuclear 98.2 6.9E-05 1.5E-09 77.3 16.2 98 209-317 307-408 (1018)
116 COG2956 Predicted N-acetylgluc 98.2 0.00012 2.6E-09 67.5 16.2 101 211-318 143-243 (389)
117 PRK10803 tol-pal system protei 98.2 2.5E-05 5.4E-10 71.5 11.9 90 173-278 157-246 (263)
118 KOG2076 RNA polymerase III tra 98.2 2.1E-05 4.6E-10 80.4 12.1 102 208-321 138-239 (895)
119 PF13525 YfiO: Outer membrane 98.1 6.8E-05 1.5E-09 65.9 14.0 144 161-320 7-172 (203)
120 PF14559 TPR_19: Tetratricopep 98.1 6.1E-06 1.3E-10 58.8 6.1 66 220-297 2-67 (68)
121 PF13371 TPR_9: Tetratricopept 98.1 1.3E-05 2.7E-10 58.0 7.7 57 216-278 2-58 (73)
122 KOG4162 Predicted calmodulin-b 98.1 3.9E-05 8.4E-10 77.4 13.5 102 208-321 683-786 (799)
123 PRK10747 putative protoheme IX 98.1 0.00023 5E-09 68.9 18.6 94 212-317 121-215 (398)
124 cd00189 TPR Tetratricopeptide 98.1 2.5E-05 5.5E-10 56.7 9.3 85 172-278 13-97 (100)
125 KOG1586 Protein required for f 98.1 0.00023 4.9E-09 63.1 16.4 150 157-317 31-182 (288)
126 KOG1941 Acetylcholine receptor 98.1 0.00016 3.5E-09 67.7 16.3 113 208-320 205-322 (518)
127 KOG4234 TPR repeat-containing 98.1 0.00018 4E-09 62.3 15.2 131 153-306 89-219 (271)
128 COG4700 Uncharacterized protei 98.1 0.00013 2.8E-09 62.6 13.8 97 212-318 92-189 (251)
129 KOG0624 dsRNA-activated protei 98.1 2.6E-05 5.6E-10 72.4 9.9 101 207-319 36-136 (504)
130 TIGR00540 hemY_coli hemY prote 98.1 7E-05 1.5E-09 72.8 13.5 90 217-319 307-400 (409)
131 PRK11906 transcriptional regul 98.0 6.3E-05 1.4E-09 72.8 12.6 101 208-320 294-403 (458)
132 KOG0548 Molecular co-chaperone 98.0 6.1E-05 1.3E-09 73.4 11.9 121 166-314 365-485 (539)
133 PF14559 TPR_19: Tetratricopep 98.0 9.8E-06 2.1E-10 57.7 4.9 56 260-321 2-57 (68)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2E-05 4.4E-10 76.1 8.4 66 207-278 73-141 (453)
135 PRK10747 putative protoheme IX 98.0 0.00015 3.2E-09 70.3 14.4 87 221-320 306-392 (398)
136 KOG4648 Uncharacterized conser 98.0 1.4E-05 3E-10 74.2 6.6 96 213-320 101-196 (536)
137 KOG1586 Protein required for f 98.0 0.00016 3.4E-09 64.0 12.8 111 209-320 34-145 (288)
138 PF09976 TPR_21: Tetratricopep 98.0 0.00041 8.9E-09 57.4 14.3 100 209-314 11-110 (145)
139 PRK14574 hmsH outer membrane p 97.9 0.0001 2.2E-09 77.4 12.7 129 163-319 38-166 (822)
140 KOG4555 TPR repeat-containing 97.9 0.00043 9.4E-09 56.1 13.3 95 166-278 50-144 (175)
141 KOG1128 Uncharacterized conser 97.9 0.00013 2.9E-09 73.3 12.7 98 208-317 484-581 (777)
142 COG2976 Uncharacterized protei 97.9 0.0028 6.1E-08 54.8 19.1 101 209-319 89-189 (207)
143 KOG1585 Protein required for f 97.9 0.0014 3.1E-08 58.4 17.3 114 208-322 30-143 (308)
144 PF12968 DUF3856: Domain of Un 97.9 0.0016 3.5E-08 51.8 15.2 112 210-321 10-132 (144)
145 KOG0624 dsRNA-activated protei 97.9 0.00083 1.8E-08 62.6 15.7 102 155-278 34-135 (504)
146 COG4783 Putative Zn-dependent 97.8 0.00016 3.4E-09 69.9 11.0 101 208-320 305-405 (484)
147 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00019 4.2E-09 66.4 11.0 109 204-320 76-184 (390)
148 PF12862 Apc5: Anaphase-promot 97.8 0.00036 7.7E-09 53.6 11.0 82 218-299 7-91 (94)
149 KOG1128 Uncharacterized conser 97.7 0.00023 5.1E-09 71.6 10.9 118 174-319 500-617 (777)
150 COG4785 NlpI Lipoprotein NlpI, 97.7 0.00094 2E-08 58.7 12.5 132 161-317 67-265 (297)
151 PF06552 TOM20_plant: Plant sp 97.7 0.0003 6.4E-09 60.0 9.1 83 225-319 7-103 (186)
152 PRK14720 transcript cleavage f 97.6 0.00085 1.8E-08 70.5 13.4 107 208-321 115-255 (906)
153 PF12688 TPR_5: Tetratrico pep 97.6 0.00041 8.8E-09 55.8 8.6 69 250-321 2-70 (120)
154 KOG4642 Chaperone-dependent E3 97.6 0.00015 3.2E-09 64.4 6.4 98 211-320 12-109 (284)
155 COG1729 Uncharacterized protei 97.6 0.0008 1.7E-08 60.9 10.8 101 162-278 144-244 (262)
156 PF12569 NARP1: NMDA receptor- 97.6 0.0023 4.9E-08 64.0 14.9 99 203-313 188-286 (517)
157 KOG0550 Molecular chaperone (D 97.5 0.0012 2.6E-08 62.8 12.0 106 157-280 247-352 (486)
158 PF00515 TPR_1: Tetratricopept 97.5 0.00016 3.6E-09 44.1 4.2 30 291-320 3-32 (34)
159 PF07719 TPR_2: Tetratricopept 97.5 0.00028 6E-09 42.9 4.9 32 290-321 2-33 (34)
160 KOG1174 Anaphase-promoting com 97.5 0.0041 8.9E-08 59.4 14.7 101 208-320 333-435 (564)
161 KOG1174 Anaphase-promoting com 97.5 0.0019 4.2E-08 61.5 12.4 108 208-322 367-504 (564)
162 PF03704 BTAD: Bacterial trans 97.5 0.0053 1.2E-07 50.5 13.9 105 211-321 8-128 (146)
163 PF10602 RPN7: 26S proteasome 97.4 0.01 2.2E-07 51.1 15.7 106 209-317 36-141 (177)
164 PF13512 TPR_18: Tetratricopep 97.4 0.0028 6E-08 52.3 11.5 101 162-278 13-128 (142)
165 PF09986 DUF2225: Uncharacteri 97.4 0.0036 7.8E-08 55.5 13.1 97 222-318 90-194 (214)
166 PF13431 TPR_17: Tetratricopep 97.4 0.00013 2.7E-09 45.1 2.7 34 271-310 1-34 (34)
167 PF13176 TPR_7: Tetratricopept 97.4 0.00041 8.9E-09 43.3 5.1 31 251-281 1-31 (36)
168 PF04733 Coatomer_E: Coatomer 97.4 0.0014 3.1E-08 60.8 10.6 116 174-317 146-264 (290)
169 KOG3060 Uncharacterized conser 97.4 0.0099 2.1E-07 53.5 15.1 96 211-318 88-183 (289)
170 KOG0545 Aryl-hydrocarbon recep 97.4 0.0036 7.8E-08 56.0 12.2 105 209-319 178-294 (329)
171 PF00515 TPR_1: Tetratricopept 97.4 0.00054 1.2E-08 41.8 5.2 30 249-278 1-30 (34)
172 PF10300 DUF3808: Protein of u 97.4 0.0047 1E-07 61.2 14.3 105 208-319 266-377 (468)
173 PF13176 TPR_7: Tetratricopept 97.3 0.0005 1.1E-08 42.9 4.6 30 291-320 1-30 (36)
174 PF13428 TPR_14: Tetratricopep 97.3 0.00047 1E-08 45.0 4.7 42 250-297 2-43 (44)
175 COG4105 ComL DNA uptake lipopr 97.3 0.038 8.2E-07 49.9 17.8 142 160-320 35-198 (254)
176 PRK15331 chaperone protein Sic 97.3 0.0016 3.5E-08 54.9 8.5 99 158-278 36-134 (165)
177 KOG1585 Protein required for f 97.2 0.02 4.2E-07 51.4 15.2 144 163-317 74-218 (308)
178 PRK10153 DNA-binding transcrip 97.2 0.0033 7.1E-08 63.0 11.9 109 206-320 336-451 (517)
179 PF09986 DUF2225: Uncharacteri 97.2 0.0035 7.5E-08 55.6 10.7 96 174-278 92-194 (214)
180 PRK11906 transcriptional regul 97.2 0.0047 1E-07 60.1 12.2 110 176-314 321-432 (458)
181 COG0457 NrfG FOG: TPR repeat [ 97.2 0.028 6.1E-07 46.5 15.4 94 218-320 139-233 (291)
182 PF12569 NARP1: NMDA receptor- 97.2 0.007 1.5E-07 60.6 13.3 125 174-320 209-336 (517)
183 KOG1156 N-terminal acetyltrans 97.2 0.0049 1.1E-07 61.7 11.9 100 208-319 74-173 (700)
184 KOG4648 Uncharacterized conser 97.2 0.0047 1E-07 57.8 10.9 96 161-278 99-194 (536)
185 PF07719 TPR_2: Tetratricopept 97.1 0.0013 2.7E-08 39.9 5.0 30 249-278 1-30 (34)
186 KOG1156 N-terminal acetyltrans 97.1 0.0031 6.7E-08 63.0 10.3 122 170-319 18-139 (700)
187 KOG2376 Signal recognition par 97.1 0.013 2.8E-07 58.2 14.5 111 211-321 112-256 (652)
188 PF06552 TOM20_plant: Plant sp 97.1 0.0091 2E-07 51.1 11.6 83 174-278 6-109 (186)
189 KOG4642 Chaperone-dependent E3 97.1 0.0047 1E-07 55.0 10.1 102 160-283 11-112 (284)
190 KOG1127 TPR repeat-containing 97.1 0.001 2.3E-08 69.1 6.9 98 211-320 564-661 (1238)
191 KOG1127 TPR repeat-containing 97.1 0.0045 9.7E-08 64.6 11.4 106 208-319 595-701 (1238)
192 COG4785 NlpI Lipoprotein NlpI, 97.1 0.0011 2.4E-08 58.3 6.1 100 207-318 63-162 (297)
193 PF13181 TPR_8: Tetratricopept 97.1 0.0015 3.3E-08 39.7 5.0 31 290-320 2-32 (34)
194 PF13431 TPR_17: Tetratricopep 97.1 0.00039 8.5E-09 42.9 2.1 34 231-270 1-34 (34)
195 PF12862 Apc5: Anaphase-promot 97.0 0.0048 1E-07 47.2 8.4 64 258-321 7-73 (94)
196 KOG0376 Serine-threonine phosp 97.0 0.00051 1.1E-08 66.5 3.0 97 214-322 9-105 (476)
197 KOG4340 Uncharacterized conser 96.9 0.035 7.6E-07 51.2 14.0 63 250-318 145-207 (459)
198 KOG2796 Uncharacterized conser 96.9 0.011 2.4E-07 53.6 10.5 108 207-320 210-317 (366)
199 COG4105 ComL DNA uptake lipopr 96.9 0.018 4E-07 51.9 12.0 107 208-320 33-147 (254)
200 KOG4162 Predicted calmodulin-b 96.9 0.0083 1.8E-07 61.1 10.5 97 162-280 687-785 (799)
201 KOG2376 Signal recognition par 96.8 0.021 4.6E-07 56.7 12.8 98 213-319 83-205 (652)
202 KOG2610 Uncharacterized conser 96.8 0.068 1.5E-06 50.1 15.3 94 214-315 180-273 (491)
203 PF13428 TPR_14: Tetratricopep 96.8 0.0031 6.6E-08 41.0 4.5 41 211-257 3-43 (44)
204 COG3071 HemY Uncharacterized e 96.7 0.034 7.4E-07 52.8 13.0 66 248-320 327-392 (400)
205 COG0457 NrfG FOG: TPR repeat [ 96.7 0.091 2E-06 43.4 14.5 105 208-321 94-199 (291)
206 KOG0495 HAT repeat protein [RN 96.7 0.016 3.5E-07 58.3 10.7 86 220-318 629-714 (913)
207 KOG3785 Uncharacterized conser 96.6 0.026 5.7E-07 53.1 11.4 125 174-320 72-216 (557)
208 PF13374 TPR_10: Tetratricopep 96.5 0.0065 1.4E-07 38.3 4.9 29 291-319 4-32 (42)
209 PF09295 ChAPs: ChAPs (Chs5p-A 96.5 0.03 6.6E-07 54.1 11.1 91 216-321 176-266 (395)
210 KOG1308 Hsp70-interacting prot 96.4 0.00091 2E-08 62.3 0.5 94 213-318 118-211 (377)
211 PF13174 TPR_6: Tetratricopept 96.4 0.0053 1.2E-07 36.7 3.8 30 291-320 2-31 (33)
212 PF13181 TPR_8: Tetratricopept 96.4 0.0099 2.1E-07 35.9 4.9 30 211-240 3-32 (34)
213 PLN03218 maturation of RBCL 1; 96.4 0.07 1.5E-06 58.0 14.6 61 251-316 686-746 (1060)
214 PF03704 BTAD: Bacterial trans 96.4 0.1 2.2E-06 42.8 12.4 107 174-287 21-135 (146)
215 KOG0495 HAT repeat protein [RN 96.4 0.032 6.8E-07 56.3 10.6 96 210-317 652-747 (913)
216 PLN03218 maturation of RBCL 1; 96.3 0.086 1.9E-06 57.3 14.9 97 211-317 686-782 (1060)
217 PF04733 Coatomer_E: Coatomer 96.3 0.0094 2E-07 55.3 6.6 99 209-319 131-231 (290)
218 PF13374 TPR_10: Tetratricopep 96.3 0.012 2.5E-07 37.1 5.0 34 249-282 2-35 (42)
219 KOG3785 Uncharacterized conser 96.3 0.0098 2.1E-07 55.9 6.1 87 218-315 31-117 (557)
220 KOG2796 Uncharacterized conser 96.2 0.12 2.7E-06 46.9 12.9 104 211-319 179-282 (366)
221 KOG2471 TPR repeat-containing 96.2 0.029 6.3E-07 54.8 9.3 111 209-320 240-366 (696)
222 COG4235 Cytochrome c biogenesi 96.2 0.061 1.3E-06 49.5 10.8 85 174-280 171-258 (287)
223 KOG2300 Uncharacterized conser 96.1 0.14 3.1E-06 50.0 13.5 108 207-314 443-552 (629)
224 PF04781 DUF627: Protein of un 96.1 0.08 1.7E-06 41.7 9.5 98 215-321 2-110 (111)
225 PLN03081 pentatricopeptide (PP 96.1 0.059 1.3E-06 56.0 11.6 102 209-317 290-419 (697)
226 COG4700 Uncharacterized protei 96.0 0.5 1.1E-05 41.0 14.9 120 173-319 103-223 (251)
227 KOG0545 Aryl-hydrocarbon recep 95.9 0.077 1.7E-06 47.7 9.9 117 155-278 174-293 (329)
228 PF10300 DUF3808: Protein of u 95.9 0.043 9.3E-07 54.4 9.3 88 222-317 246-333 (468)
229 PF10345 Cohesin_load: Cohesin 95.9 0.33 7.1E-06 49.8 15.9 115 204-320 54-170 (608)
230 KOG3617 WD40 and TPR repeat-co 95.9 0.19 4.1E-06 52.2 13.6 109 209-317 858-995 (1416)
231 PF04184 ST7: ST7 protein; In 95.8 0.14 2.9E-06 50.4 12.1 65 249-317 259-323 (539)
232 smart00028 TPR Tetratricopepti 95.7 0.014 3.1E-07 33.2 3.3 30 291-320 3-32 (34)
233 PF10579 Rapsyn_N: Rapsyn N-te 95.7 0.21 4.5E-06 36.9 9.9 74 209-285 6-79 (80)
234 PLN03081 pentatricopeptide (PP 95.7 0.089 1.9E-06 54.7 11.3 97 209-314 391-487 (697)
235 PF11817 Foie-gras_1: Foie gra 95.7 0.22 4.8E-06 45.0 12.5 90 225-314 154-243 (247)
236 COG3071 HemY Uncharacterized e 95.7 1.2 2.6E-05 42.6 17.5 97 208-315 117-213 (400)
237 PF13174 TPR_6: Tetratricopept 95.7 0.023 4.9E-07 33.8 4.1 29 250-278 1-29 (33)
238 KOG4340 Uncharacterized conser 95.7 0.046 1E-06 50.5 7.6 99 208-312 143-264 (459)
239 PLN03077 Protein ECB2; Provisi 95.6 0.11 2.4E-06 55.3 11.8 99 208-315 553-651 (857)
240 PF10602 RPN7: 26S proteasome 95.6 0.18 3.9E-06 43.3 11.0 91 228-321 15-105 (177)
241 PF08631 SPO22: Meiosis protei 95.6 0.3 6.6E-06 44.9 13.1 91 220-310 4-105 (278)
242 KOG0551 Hsp90 co-chaperone CNS 95.4 0.19 4.2E-06 47.0 10.8 104 158-279 80-183 (390)
243 PF12968 DUF3856: Domain of Un 95.4 1.2 2.5E-05 35.9 14.7 105 173-281 23-132 (144)
244 KOG2471 TPR repeat-containing 95.3 0.03 6.4E-07 54.7 5.6 123 174-302 248-382 (696)
245 KOG1070 rRNA processing protei 95.3 0.97 2.1E-05 49.6 16.8 100 210-319 1531-1630(1710)
246 KOG0687 26S proteasome regulat 95.2 1.7 3.7E-05 40.8 16.0 110 208-320 103-212 (393)
247 KOG0376 Serine-threonine phosp 95.0 0.03 6.6E-07 54.5 4.4 109 162-298 7-115 (476)
248 PF05843 Suf: Suppressor of fo 95.0 1.4 3.1E-05 40.5 15.4 102 211-321 37-139 (280)
249 KOG4814 Uncharacterized conser 94.8 1.5 3.2E-05 44.6 15.7 104 211-320 356-459 (872)
250 KOG2300 Uncharacterized conser 94.8 0.38 8.2E-06 47.2 11.3 110 207-320 402-516 (629)
251 PLN03077 Protein ECB2; Provisi 94.6 0.38 8.2E-06 51.3 12.1 54 258-317 666-719 (857)
252 KOG3824 Huntingtin interacting 94.6 0.081 1.8E-06 49.0 5.9 79 207-297 114-192 (472)
253 PF10579 Rapsyn_N: Rapsyn N-te 94.5 0.47 1E-05 35.0 8.7 67 251-320 8-74 (80)
254 KOG1915 Cell cycle control pro 94.5 0.99 2.1E-05 44.4 13.2 94 211-317 406-499 (677)
255 COG5187 RPN7 26S proteasome re 94.4 3.4 7.5E-05 38.2 15.7 133 175-320 91-223 (412)
256 KOG2053 Mitochondrial inherita 94.3 0.92 2E-05 47.5 13.3 105 174-307 24-128 (932)
257 PF11817 Foie-gras_1: Foie gra 94.1 1.1 2.5E-05 40.4 12.6 90 176-275 155-244 (247)
258 smart00028 TPR Tetratricopepti 93.9 0.08 1.7E-06 29.8 3.2 29 250-278 2-30 (34)
259 KOG3081 Vesicle coat complex C 93.9 1.9 4.2E-05 39.3 13.1 79 224-314 188-266 (299)
260 KOG3081 Vesicle coat complex C 93.9 1 2.2E-05 41.1 11.3 63 252-320 172-238 (299)
261 PF14853 Fis1_TPR_C: Fis1 C-te 93.9 0.44 9.5E-06 32.4 7.0 39 250-294 2-40 (53)
262 COG3118 Thioredoxin domain-con 93.8 1.1 2.4E-05 41.4 11.6 100 213-318 138-265 (304)
263 PRK13184 pknD serine/threonine 93.8 0.27 5.9E-06 52.5 8.8 107 212-321 478-584 (932)
264 PF05843 Suf: Suppressor of fo 93.8 0.22 4.8E-06 45.9 7.3 94 214-319 6-100 (280)
265 KOG1550 Extracellular protein 93.6 0.76 1.6E-05 46.6 11.4 101 208-317 243-356 (552)
266 KOG3616 Selective LIM binding 93.4 0.55 1.2E-05 48.3 9.7 101 214-315 666-791 (1636)
267 PF09613 HrpB1_HrpK: Bacterial 93.3 1.2 2.6E-05 37.5 10.2 87 208-306 9-95 (160)
268 KOG1308 Hsp70-interacting prot 93.3 0.042 9.1E-07 51.4 1.6 83 174-278 129-211 (377)
269 KOG2053 Mitochondrial inherita 93.2 0.31 6.8E-06 50.8 7.8 88 221-320 21-108 (932)
270 PF15015 NYD-SP12_N: Spermatog 93.2 0.9 2E-05 43.9 10.3 105 206-316 173-289 (569)
271 KOG3616 Selective LIM binding 93.1 1.8 3.8E-05 44.8 12.7 81 232-312 748-847 (1636)
272 PF10516 SHNi-TPR: SHNi-TPR; 93.1 0.18 3.8E-06 31.9 3.7 30 291-320 3-32 (38)
273 KOG3617 WD40 and TPR repeat-co 92.9 1 2.2E-05 47.0 10.9 87 232-319 842-942 (1416)
274 PF02259 FAT: FAT domain; Int 92.9 6.7 0.00015 36.5 16.0 114 205-320 142-289 (352)
275 COG0790 FOG: TPR repeat, SEL1 92.8 2.3 5.1E-05 38.8 12.6 96 209-318 109-220 (292)
276 PRK10941 hypothetical protein; 92.7 0.89 1.9E-05 41.7 9.4 66 248-319 180-245 (269)
277 KOG2581 26S proteasome regulat 92.6 1.6 3.6E-05 42.0 11.0 111 209-321 169-279 (493)
278 PF10345 Cohesin_load: Cohesin 92.4 15 0.00032 37.8 20.0 135 174-320 75-210 (608)
279 PF04184 ST7: ST7 protein; In 92.2 1.4 3E-05 43.6 10.4 96 217-320 176-290 (539)
280 KOG1550 Extracellular protein 92.1 1.1 2.3E-05 45.5 10.1 92 211-318 290-393 (552)
281 KOG4507 Uncharacterized conser 92.0 0.22 4.8E-06 49.8 4.7 96 213-319 610-706 (886)
282 PF08631 SPO22: Meiosis protei 91.9 8.5 0.00018 35.3 15.0 108 207-318 33-150 (278)
283 PF14853 Fis1_TPR_C: Fis1 C-te 91.8 0.43 9.4E-06 32.5 4.7 31 290-320 2-32 (53)
284 KOG1463 26S proteasome regulat 91.3 1.9 4.1E-05 40.7 9.7 107 213-319 132-239 (411)
285 COG2976 Uncharacterized protei 91.3 5 0.00011 35.0 11.7 98 214-314 36-151 (207)
286 COG2909 MalT ATP-dependent tra 91.2 17 0.00036 38.6 17.3 112 208-319 496-648 (894)
287 PF10516 SHNi-TPR: SHNi-TPR; 91.0 0.55 1.2E-05 29.6 4.2 32 250-281 2-33 (38)
288 PF07721 TPR_4: Tetratricopept 90.9 0.32 6.9E-06 27.7 2.8 23 291-313 3-25 (26)
289 KOG1839 Uncharacterized protei 90.7 5.2 0.00011 43.8 13.7 117 204-320 1010-1130(1236)
290 KOG1070 rRNA processing protei 90.4 14 0.0003 41.2 16.3 101 208-318 1563-1663(1710)
291 COG4976 Predicted methyltransf 90.4 0.44 9.6E-06 42.5 4.5 57 259-321 5-61 (287)
292 KOG2610 Uncharacterized conser 90.3 6.7 0.00014 37.2 12.3 118 175-316 119-236 (491)
293 KOG1839 Uncharacterized protei 90.2 1.3 2.9E-05 48.1 8.8 112 209-320 973-1088(1236)
294 PF15015 NYD-SP12_N: Spermatog 90.2 13 0.00028 36.3 14.5 124 154-283 171-296 (569)
295 COG5159 RPN6 26S proteasome re 90.2 8.6 0.00019 35.7 12.7 106 213-318 129-235 (421)
296 PF07721 TPR_4: Tetratricopept 90.1 0.4 8.6E-06 27.3 2.8 23 251-273 3-25 (26)
297 COG3898 Uncharacterized membra 90.1 19 0.00041 34.9 16.1 97 209-317 120-216 (531)
298 PF13281 DUF4071: Domain of un 90.1 13 0.00029 35.7 14.7 102 211-319 143-256 (374)
299 PF10373 EST1_DNA_bind: Est1 D 90.0 0.85 1.8E-05 41.3 6.4 62 228-301 1-62 (278)
300 PF04190 DUF410: Protein of un 90.0 8.3 0.00018 35.2 12.9 102 211-313 12-114 (260)
301 PF10952 DUF2753: Protein of u 90.0 4.2 9.1E-05 32.8 9.3 67 252-318 4-79 (140)
302 COG5159 RPN6 26S proteasome re 89.7 17 0.00036 33.9 14.2 68 250-317 126-193 (421)
303 COG4976 Predicted methyltransf 89.5 0.56 1.2E-05 41.9 4.5 55 218-278 4-58 (287)
304 COG4649 Uncharacterized protei 89.4 10 0.00023 32.6 11.8 95 219-317 68-195 (221)
305 KOG0686 COP9 signalosome, subu 89.4 11 0.00023 36.6 13.1 100 211-315 152-255 (466)
306 PF07079 DUF1347: Protein of u 89.2 9.5 0.00021 37.5 12.9 52 256-314 469-520 (549)
307 PF09670 Cas_Cas02710: CRISPR- 88.8 16 0.00034 35.3 14.5 107 210-319 132-271 (379)
308 PF02259 FAT: FAT domain; Int 88.8 9.9 0.00022 35.3 13.0 88 210-303 185-306 (352)
309 PRK10941 hypothetical protein; 88.7 5.3 0.00011 36.7 10.5 67 208-280 180-246 (269)
310 TIGR02561 HrpB1_HrpK type III 88.6 4.7 0.0001 33.6 9.1 84 211-306 12-95 (153)
311 KOG1310 WD40 repeat protein [G 88.2 2.2 4.7E-05 42.6 7.9 97 212-320 377-476 (758)
312 COG0790 FOG: TPR repeat, SEL1 88.1 15 0.00032 33.5 13.3 93 209-318 148-266 (292)
313 COG3629 DnrI DNA-binding trans 88.1 7.1 0.00015 36.0 10.9 65 248-318 152-216 (280)
314 KOG3783 Uncharacterized conser 87.9 4.2 9.1E-05 40.5 9.7 80 240-319 440-521 (546)
315 COG2909 MalT ATP-dependent tra 87.5 24 0.00052 37.5 15.3 96 208-304 457-552 (894)
316 KOG4814 Uncharacterized conser 87.4 29 0.00063 35.7 15.2 103 162-280 357-459 (872)
317 KOG3364 Membrane protein invol 87.1 8.2 0.00018 31.7 9.4 67 208-278 31-100 (149)
318 KOG3824 Huntingtin interacting 86.5 1.9 4.1E-05 40.2 6.2 62 253-320 120-181 (472)
319 PF11207 DUF2989: Protein of u 86.4 22 0.00048 31.2 14.4 87 217-311 114-200 (203)
320 KOG2047 mRNA splicing factor [ 86.0 15 0.00032 37.8 12.4 111 207-317 246-415 (835)
321 COG3947 Response regulator con 85.8 4.6 0.0001 37.5 8.2 63 252-320 282-344 (361)
322 PRK13184 pknD serine/threonine 85.6 10 0.00022 40.9 11.9 95 174-281 490-584 (932)
323 KOG1463 26S proteasome regulat 85.2 23 0.00049 33.7 12.5 95 222-316 101-195 (411)
324 COG5187 RPN7 26S proteasome re 84.5 12 0.00026 34.8 10.2 80 224-303 90-169 (412)
325 PF14561 TPR_20: Tetratricopep 84.3 4.9 0.00011 30.4 6.6 76 229-314 8-83 (90)
326 KOG3364 Membrane protein invol 84.0 9.8 0.00021 31.3 8.5 68 248-319 31-101 (149)
327 PF13281 DUF4071: Domain of un 83.5 9.9 0.00022 36.6 9.8 91 223-320 240-336 (374)
328 PF12739 TRAPPC-Trs85: ER-Golg 82.8 27 0.00059 34.0 12.9 106 213-318 212-329 (414)
329 KOG4014 Uncharacterized conser 82.8 5.9 0.00013 34.4 7.1 92 218-317 36-140 (248)
330 PF14561 TPR_20: Tetratricopep 82.2 17 0.00036 27.4 8.8 76 179-274 8-83 (90)
331 PF05053 Menin: Menin; InterP 81.5 15 0.00032 37.1 10.3 70 223-293 293-362 (618)
332 KOG0546 HSP90 co-chaperone CPR 81.2 0.86 1.9E-05 43.0 1.6 104 212-321 225-341 (372)
333 cd02679 MIT_spastin MIT: domai 81.0 3.5 7.5E-05 30.5 4.5 25 295-319 14-38 (79)
334 TIGR03504 FimV_Cterm FimV C-te 80.8 3.2 6.9E-05 27.0 3.8 25 293-317 3-27 (44)
335 KOG1497 COP9 signalosome, subu 80.5 53 0.0011 31.1 15.2 106 208-314 102-209 (399)
336 COG3629 DnrI DNA-binding trans 80.5 11 0.00025 34.7 8.7 73 208-286 152-225 (280)
337 KOG1464 COP9 signalosome, subu 80.4 15 0.00032 34.0 9.1 131 174-316 42-172 (440)
338 PF07720 TPR_3: Tetratricopept 80.1 6.9 0.00015 24.2 5.0 23 251-273 3-25 (36)
339 KOG2047 mRNA splicing factor [ 80.1 18 0.00039 37.2 10.4 99 212-316 514-613 (835)
340 KOG0687 26S proteasome regulat 79.9 26 0.00056 33.2 10.7 77 226-302 81-157 (393)
341 KOG2581 26S proteasome regulat 79.7 9.9 0.00022 36.8 8.1 75 204-280 204-278 (493)
342 PF10255 Paf67: RNA polymerase 79.6 6.8 0.00015 38.1 7.3 73 210-283 123-198 (404)
343 KOG4322 Anaphase-promoting com 79.6 41 0.00089 32.9 12.3 114 206-319 270-383 (482)
344 COG3118 Thioredoxin domain-con 79.1 53 0.0012 30.6 12.4 116 169-304 144-287 (304)
345 KOG1464 COP9 signalosome, subu 78.8 27 0.00058 32.3 10.3 96 222-319 40-135 (440)
346 PF07079 DUF1347: Protein of u 78.7 14 0.0003 36.4 8.9 60 208-274 461-520 (549)
347 KOG3783 Uncharacterized conser 78.6 14 0.00031 36.9 9.2 76 204-279 444-521 (546)
348 PF10255 Paf67: RNA polymerase 78.3 4.2 9.1E-05 39.5 5.4 69 250-319 123-194 (404)
349 PF11207 DUF2989: Protein of u 78.2 4.1 8.8E-05 35.7 4.8 59 208-269 140-198 (203)
350 KOG4507 Uncharacterized conser 77.8 8.5 0.00018 39.1 7.3 73 211-295 644-716 (886)
351 KOG1310 WD40 repeat protein [G 77.4 17 0.00037 36.5 9.2 99 158-278 373-474 (758)
352 PF07720 TPR_3: Tetratricopept 77.2 9.1 0.0002 23.7 4.9 30 290-319 2-33 (36)
353 PF10952 DUF2753: Protein of u 77.1 23 0.00049 28.7 8.2 66 212-277 4-78 (140)
354 PF04212 MIT: MIT (microtubule 76.9 7.5 0.00016 27.5 5.2 30 249-278 5-34 (69)
355 PF05053 Menin: Menin; InterP 76.2 33 0.00072 34.7 10.9 85 235-320 263-349 (618)
356 KOG2908 26S proteasome regulat 75.8 75 0.0016 30.3 18.5 99 218-316 84-184 (380)
357 cd02682 MIT_AAA_Arch MIT: doma 75.7 7.8 0.00017 28.4 4.9 30 249-278 6-35 (75)
358 cd02682 MIT_AAA_Arch MIT: doma 75.3 29 0.00064 25.3 8.3 34 208-241 5-38 (75)
359 COG2178 Predicted RNA-binding 74.4 23 0.0005 30.9 8.3 103 215-317 35-149 (204)
360 TIGR03504 FimV_Cterm FimV C-te 73.8 6.7 0.00014 25.5 3.8 25 253-277 3-27 (44)
361 KOG2041 WD40 repeat protein [G 73.0 48 0.001 34.6 11.3 31 206-236 793-823 (1189)
362 cd02680 MIT_calpain7_2 MIT: do 72.4 27 0.00058 25.5 7.1 19 263-281 20-38 (75)
363 KOG2114 Vacuolar assembly/sort 72.3 1.2E+02 0.0026 32.3 14.1 107 208-314 367-515 (933)
364 PF09613 HrpB1_HrpK: Bacterial 72.3 39 0.00085 28.5 9.0 64 248-317 9-72 (160)
365 cd02681 MIT_calpain7_1 MIT: do 72.2 10 0.00022 27.8 4.9 31 248-278 5-35 (76)
366 COG3014 Uncharacterized protei 70.9 1E+02 0.0022 29.5 14.1 29 209-237 58-86 (449)
367 COG2912 Uncharacterized conser 70.5 24 0.00053 32.3 8.0 68 248-321 180-247 (269)
368 KOG0890 Protein kinase of the 70.3 1.7E+02 0.0038 34.8 15.9 109 204-320 1665-1786(2382)
369 COG5091 SGT1 Suppressor of G2 69.6 6.7 0.00015 35.9 4.1 62 220-281 50-111 (368)
370 COG5091 SGT1 Suppressor of G2 69.5 14 0.0003 33.9 6.1 59 263-321 53-111 (368)
371 KOG0546 HSP90 co-chaperone CPR 69.0 6.9 0.00015 37.1 4.2 118 168-297 231-351 (372)
372 KOG2460 Signal recognition par 68.7 97 0.0021 31.2 12.1 29 292-320 425-453 (593)
373 KOG2908 26S proteasome regulat 67.3 39 0.00085 32.1 8.7 62 258-319 84-145 (380)
374 PF04212 MIT: MIT (microtubule 66.6 20 0.00044 25.2 5.5 34 208-241 4-37 (69)
375 KOG1915 Cell cycle control pro 66.3 1.5E+02 0.0032 29.8 16.1 34 208-241 106-139 (677)
376 PF04910 Tcf25: Transcriptiona 65.6 1.3E+02 0.0028 28.8 12.4 102 208-315 39-165 (360)
377 PF08424 NRDE-2: NRDE-2, neces 65.3 1.2E+02 0.0026 28.4 16.0 126 174-318 46-183 (321)
378 cd02679 MIT_spastin MIT: domai 65.1 30 0.00064 25.6 6.1 31 252-282 11-41 (79)
379 KOG0686 COP9 signalosome, subu 65.1 81 0.0018 30.8 10.5 86 230-318 131-216 (466)
380 COG3014 Uncharacterized protei 65.0 1.2E+02 0.0026 29.1 11.3 116 203-320 119-244 (449)
381 cd02683 MIT_1 MIT: domain cont 64.8 15 0.00032 26.9 4.5 31 248-278 5-35 (77)
382 COG3947 Response regulator con 64.7 1.1E+02 0.0023 28.8 10.8 60 214-279 284-343 (361)
383 PF11846 DUF3366: Domain of un 63.3 39 0.00085 28.9 7.7 32 289-320 144-175 (193)
384 cd02681 MIT_calpain7_1 MIT: do 62.7 58 0.0013 23.8 8.2 34 208-241 5-38 (76)
385 PHA02537 M terminase endonucle 61.9 56 0.0012 29.3 8.5 99 220-320 94-209 (230)
386 PF04053 Coatomer_WDAD: Coatom 61.6 1.7E+02 0.0037 28.9 12.6 27 211-237 349-375 (443)
387 PF04910 Tcf25: Transcriptiona 61.4 1.1E+02 0.0023 29.4 10.9 76 246-321 37-135 (360)
388 cd02683 MIT_1 MIT: domain cont 60.3 28 0.00061 25.5 5.3 34 208-241 5-38 (77)
389 COG3914 Spy Predicted O-linked 59.9 2.1E+02 0.0045 29.3 12.9 100 215-320 73-173 (620)
390 KOG3024 Uncharacterized conser 59.7 1.5E+02 0.0032 27.6 12.1 99 213-315 50-153 (312)
391 KOG2041 WD40 repeat protein [G 59.4 43 0.00093 35.0 7.9 31 285-315 792-822 (1189)
392 smart00745 MIT Microtubule Int 59.3 24 0.00052 25.4 4.8 32 247-278 6-37 (77)
393 smart00671 SEL1 Sel1-like repe 59.1 19 0.00041 21.1 3.6 28 290-317 2-33 (36)
394 PF12854 PPR_1: PPR repeat 59.0 22 0.00048 21.3 3.8 26 289-314 7-32 (34)
395 PF08238 Sel1: Sel1 repeat; I 58.3 24 0.00052 21.2 4.1 28 290-317 2-36 (39)
396 PF00244 14-3-3: 14-3-3 protei 57.5 62 0.0013 29.0 8.1 54 265-318 142-198 (236)
397 KOG2396 HAT (Half-A-TPR) repea 57.3 1.4E+02 0.0031 30.0 10.9 48 265-318 121-169 (568)
398 PF04053 Coatomer_WDAD: Coatom 56.9 86 0.0019 31.0 9.6 74 232-309 334-409 (443)
399 PF12854 PPR_1: PPR repeat 56.1 25 0.00055 21.0 3.8 26 249-274 7-32 (34)
400 PRK15180 Vi polysaccharide bio 56.1 50 0.0011 33.0 7.5 94 215-320 329-422 (831)
401 cd02684 MIT_2 MIT: domain cont 55.0 40 0.00087 24.5 5.3 33 208-240 5-37 (75)
402 COG2178 Predicted RNA-binding 54.1 60 0.0013 28.4 7.0 65 249-313 29-93 (204)
403 smart00745 MIT Microtubule Int 54.0 46 0.001 23.8 5.6 34 208-241 7-40 (77)
404 TIGR02561 HrpB1_HrpK type III 53.4 97 0.0021 25.9 7.9 62 250-317 11-72 (153)
405 PF01535 PPR: PPR repeat; Int 52.4 25 0.00053 19.7 3.2 25 292-316 3-27 (31)
406 cd02656 MIT MIT: domain contai 51.5 42 0.0009 24.0 5.0 29 250-278 7-35 (75)
407 cd02677 MIT_SNX15 MIT: domain 50.6 35 0.00075 24.8 4.4 29 250-278 7-35 (75)
408 TIGR00756 PPR pentatricopeptid 50.2 38 0.00083 19.1 4.0 25 292-316 3-27 (35)
409 cd02678 MIT_VPS4 MIT: domain c 49.5 46 0.001 23.9 4.9 30 249-278 6-35 (75)
410 PF08626 TRAPPC9-Trs120: Trans 49.0 40 0.00086 37.7 6.5 55 208-262 241-295 (1185)
411 PF13041 PPR_2: PPR repeat fam 48.6 41 0.00088 21.7 4.2 28 290-317 4-31 (50)
412 PF07219 HemY_N: HemY protein 48.5 89 0.0019 24.2 6.8 51 208-264 58-108 (108)
413 cd02678 MIT_VPS4 MIT: domain c 48.5 55 0.0012 23.5 5.2 34 208-241 5-38 (75)
414 KOG4563 Cell cycle-regulated h 48.2 77 0.0017 30.4 7.3 66 207-272 39-106 (400)
415 PF04781 DUF627: Protein of un 47.8 83 0.0018 24.8 6.3 46 227-278 62-107 (111)
416 cd02656 MIT MIT: domain contai 47.8 58 0.0013 23.2 5.3 34 208-241 5-38 (75)
417 KOG2561 Adaptor protein NUB1, 47.7 1.5E+02 0.0032 29.4 9.2 109 211-319 165-297 (568)
418 KOG2709 Uncharacterized conser 47.1 89 0.0019 30.6 7.5 34 248-281 21-54 (560)
419 COG3898 Uncharacterized membra 45.6 3.1E+02 0.0066 27.0 15.9 94 218-317 197-291 (531)
420 PF13812 PPR_3: Pentatricopept 45.6 57 0.0012 18.5 4.2 27 291-317 3-29 (34)
421 cd02684 MIT_2 MIT: domain cont 44.5 58 0.0013 23.6 4.8 30 249-278 6-35 (75)
422 TIGR01716 RGG_Cterm transcript 44.5 1.6E+02 0.0034 25.4 8.5 76 209-284 128-203 (220)
423 PF08626 TRAPPC9-Trs120: Trans 44.2 1.9E+02 0.0041 32.5 10.8 95 224-318 360-474 (1185)
424 COG2912 Uncharacterized conser 43.7 1.4E+02 0.003 27.4 8.1 62 211-278 183-244 (269)
425 KOG1920 IkappaB kinase complex 43.6 4.3E+02 0.0092 29.6 12.6 20 254-273 957-976 (1265)
426 TIGR02710 CRISPR-associated pr 43.5 3.2E+02 0.0068 26.5 14.5 62 211-273 132-195 (380)
427 KOG3807 Predicted membrane pro 43.2 3.1E+02 0.0067 26.3 10.3 92 217-316 192-302 (556)
428 PF12739 TRAPPC-Trs85: ER-Golg 42.6 3.3E+02 0.0071 26.5 17.8 137 174-320 223-401 (414)
429 smart00101 14_3_3 14-3-3 homol 40.9 1.9E+02 0.0041 26.2 8.5 80 238-317 107-199 (244)
430 cd02680 MIT_calpain7_2 MIT: do 40.2 1.4E+02 0.0031 21.7 7.3 34 208-241 5-38 (75)
431 cd09247 BRO1_Alix_like_2 Prote 39.5 2.1E+02 0.0047 27.1 9.1 34 248-281 252-285 (346)
432 cd02677 MIT_SNX15 MIT: domain 38.8 89 0.0019 22.7 5.0 34 208-241 5-38 (75)
433 TIGR01716 RGG_Cterm transcript 37.8 2.6E+02 0.0057 24.0 9.4 73 248-320 127-199 (220)
434 PF00244 14-3-3: 14-3-3 protei 36.9 1.9E+02 0.0042 25.8 7.9 56 225-281 142-201 (236)
435 PF07219 HemY_N: HemY protein 36.3 2E+02 0.0043 22.1 7.5 50 249-304 59-108 (108)
436 PF10373 EST1_DNA_bind: Est1 D 36.1 73 0.0016 28.4 5.2 62 178-261 1-62 (278)
437 PF13041 PPR_2: PPR repeat fam 36.1 92 0.002 19.9 4.4 29 250-278 4-32 (50)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 35.0 2.3E+02 0.005 22.5 11.4 84 223-316 40-126 (126)
439 PF09205 DUF1955: Domain of un 34.9 2.4E+02 0.0052 23.4 7.2 30 288-317 119-148 (161)
440 cd09243 BRO1_Brox_like Protein 33.3 2E+02 0.0043 27.6 7.7 35 247-281 246-280 (353)
441 KOG1258 mRNA processing protei 33.2 5.5E+02 0.012 26.3 12.8 100 207-317 295-394 (577)
442 KOG2114 Vacuolar assembly/sort 32.8 98 0.0021 32.9 5.8 49 230-278 348-397 (933)
443 KOG2034 Vacuolar sorting prote 32.4 73 0.0016 34.0 4.9 58 254-320 363-420 (911)
444 PF03745 DUF309: Domain of unk 32.0 1.5E+02 0.0033 20.6 5.1 58 214-271 4-61 (62)
445 PF03635 Vps35: Vacuolar prote 31.9 4.4E+02 0.0096 28.1 10.7 109 212-320 595-716 (762)
446 PF04190 DUF410: Protein of un 31.9 3.9E+02 0.0084 24.2 12.4 91 228-318 69-170 (260)
447 KOG4563 Cell cycle-regulated h 31.7 1.8E+02 0.0039 28.0 6.9 63 248-310 40-104 (400)
448 KOG0985 Vesicle coat protein c 31.4 2.6E+02 0.0056 30.9 8.6 60 248-318 1103-1162(1666)
449 PRK11677 hypothetical protein; 30.3 3E+02 0.0066 22.4 7.7 13 159-171 31-43 (134)
450 PF14863 Alkyl_sulf_dimr: Alky 28.6 2.2E+02 0.0047 23.4 6.3 50 251-306 72-121 (141)
451 KOG2709 Uncharacterized conser 28.5 2.7E+02 0.0059 27.4 7.6 34 208-241 21-54 (560)
452 KOG0739 AAA+-type ATPase [Post 27.3 3.7E+02 0.0079 25.6 8.0 27 211-237 12-38 (439)
453 KOG0739 AAA+-type ATPase [Post 27.2 3.8E+02 0.0083 25.4 8.1 13 226-238 34-46 (439)
454 cd09034 BRO1_Alix_like Protein 27.2 2.9E+02 0.0062 25.9 7.8 55 227-281 211-283 (345)
455 cd09245 BRO1_UmRIM23-like Prot 26.9 2.9E+02 0.0064 27.0 7.9 34 248-281 295-328 (413)
456 KOG3807 Predicted membrane pro 26.7 5.8E+02 0.013 24.5 11.9 33 244-276 270-302 (556)
457 KOG0890 Protein kinase of the 26.6 6.7E+02 0.015 30.3 11.3 69 244-320 1665-1733(2382)
458 KOG2396 HAT (Half-A-TPR) repea 24.8 7.4E+02 0.016 25.1 10.2 71 220-299 116-187 (568)
459 KOG1914 mRNA cleavage and poly 24.6 7.8E+02 0.017 25.3 10.4 98 208-318 19-116 (656)
460 COG1750 Archaeal serine protea 24.3 6.5E+02 0.014 25.8 9.7 96 208-318 416-512 (579)
461 PF03097 BRO1: BRO1-like domai 23.9 4.4E+02 0.0095 24.9 8.5 115 207-321 105-271 (377)
462 KOG1938 Protein with predicted 23.9 3.5E+02 0.0076 29.4 8.1 61 255-316 322-382 (960)
463 PRK11619 lytic murein transgly 23.7 6.3E+02 0.014 26.3 10.0 50 261-316 324-373 (644)
464 KOG1538 Uncharacterized conser 23.6 2.3E+02 0.005 29.7 6.4 47 260-315 784-830 (1081)
465 smart00386 HAT HAT (Half-A-TPR 23.4 1.4E+02 0.0031 16.3 3.8 16 263-278 1-16 (33)
466 cd09242 BRO1_ScBro1_like Prote 22.9 3.9E+02 0.0085 25.3 7.8 34 248-281 243-276 (348)
467 PF09205 DUF1955: Domain of un 22.4 4.6E+02 0.0099 21.8 7.3 30 248-277 119-148 (161)
468 PRK04778 septation ring format 22.2 8.4E+02 0.018 24.8 14.5 70 252-321 482-551 (569)
469 PF11846 DUF3366: Domain of un 21.9 4.9E+02 0.011 21.9 10.3 31 248-278 143-173 (193)
470 cd09247 BRO1_Alix_like_2 Prote 21.4 2.4E+02 0.0052 26.8 6.0 32 288-319 252-283 (346)
471 COG4455 ImpE Protein of avirul 21.3 2.3E+02 0.0049 25.6 5.3 31 248-278 34-64 (273)
472 KOG0276 Vesicle coat complex C 21.1 1.7E+02 0.0036 30.3 4.9 74 224-318 622-695 (794)
473 cd08977 SusD starch binding ou 21.0 2.6E+02 0.0056 26.2 6.2 33 285-317 172-209 (359)
474 PF08969 USP8_dimer: USP8 dime 20.9 2.4E+02 0.0052 21.9 5.0 30 290-319 39-68 (115)
475 COG4499 Predicted membrane pro 20.6 8E+02 0.017 23.9 10.4 126 178-311 201-335 (434)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.39 E-value=4.1e-12 Score=123.85 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
++-.++...|.+++.+.+. .+.+.+++|++|..+|..++|..+|+++++..+. .+.+.
T Consensus 334 G~V~ea~~cYnkaL~l~p~----------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~ 391 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPN----------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAH 391 (966)
T ss_pred cchHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhh
Confidence 3555666667777766655 4556666777777777777777777777776666 66666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.|||.+|..+|++++|+.+|+++|.+ .|..+++|.|+|.+|.++|+...|+..|.+||.+.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 77777777777777777777777766 66666677777777777777777777777666543
No 2
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.39 E-value=2.5e-11 Score=106.46 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.++.+..+++++...|. ....++.+|.+|...|++++|+..|++++++.++ ...++.
T Consensus 54 ~~~~~i~~l~~~L~~~P~----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~ 111 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYA 111 (198)
T ss_pred hHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 557788889999998887 6779999999999999999999999999999998 889999
Q ss_pred HHHHHH-HHcCC--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASL-QRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~-~~~gd--~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
++|.++ ...|+ +++|.+.++++++. +|....++.++|..+...|++++|+.+|+++++..+.
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999975 67787 59999999999999 8889999999999999999999999999999987654
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=6.8e-12 Score=104.41 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=92.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
.+.+|.++...|++++|+.+|++++.+.|. ...++.++|.++...|++++|+..|++++++ .|..+.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHH
Confidence 556899999999999999999999999988 8899999999999999999999999999999 8889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
++++|.++...|++++|+..|++++++.++
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999987654
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.34 E-value=2.4e-11 Score=118.55 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
+..+.+...|.+++...|. -+.+..++|.+|..+|++++|+.+|++++.+.|. .++++
T Consensus 368 ~~~e~A~~ly~~al~v~p~----------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------fAda~ 425 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPE----------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------FADAL 425 (966)
T ss_pred ccchHHHHHHHHHHhhChh----------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------HHHHH
Confidence 3778899999999999887 7788999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.|+|++|-.+|+.+.|+.+|++||.+ +|..++++.|||.+|...|+..+|+..|++++.+-+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999 999999999999999999999999999999998654
No 5
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=2.9e-11 Score=105.70 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH
Q 020735 168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 247 (322)
Q Consensus 168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~ 247 (322)
.+....+...+...+++++...|. ...++..+|.+|...|+.+.|.+.|++|+.+.|+
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------ 101 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------ 101 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------
Confidence 444445778899999999999988 7778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
....++|.|..++.+|+|++|..+|++|++-. ..+..+..+.|+|.|..+.|+++.|.++|++++++.+
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 88899999999999999999999999998752 2556788999999999999999999999999998754
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.27 E-value=7.3e-11 Score=96.12 Aligned_cols=102 Identities=21% Similarity=0.234 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.....+.+|..++..|++++|...++++++..+. ...+++++|.++...|++++|++++++++++ .+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~ 83 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAAL------DPD 83 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCC
Confidence 5567888999999999999999999999998887 7889999999999999999999999999998 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
....++++|.+|...|++++|..+|+++++..++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999987654
No 7
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=1.2e-10 Score=97.20 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735 206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285 (322)
Q Consensus 206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~ 285 (322)
.+.....+.+|..++..|++++|...|+-...+.+. ....+++||.++..+|+|.+|+..|.+++.+ +
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~ 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------K 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence 446778899999999999999999999999999998 8999999999999999999999999999999 7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
++.+.++.++|.||...|+.+.|.+.|+.++...
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999876
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.8e-10 Score=107.19 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.++..+.+.+...+. +....+..++.+|.+|...|++++|+..|++++++.|+ .+.+++
T Consensus 41 ~~e~~i~~~~~~l~~~~~------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~ 102 (296)
T PRK11189 41 QQEVILARLNQILASRDL------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYN 102 (296)
T ss_pred HHHHHHHHHHHHHccccC------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence 445566666666654322 12235667888999999999999999999999998887 788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
++|.++...|++++|++.|++++++ +|....++.++|.++...|++++|++.+++++++.++
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999998 7888889999999999999999999999999887654
No 9
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=4.1e-10 Score=97.96 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.++..|++++...+. ....+..+|.++...|++++|+..++++++... .......+.
T Consensus 80 ~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~ 139 (234)
T TIGR02521 80 ELEKAEDSFRRALTLNPN----------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLE 139 (234)
T ss_pred CHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHH
Confidence 556777777777776554 344677889999999999999999999887422 122455688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
++|.++...|++++|+.+++++++. .+....++..+|.++...|++++|..+++++++..
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQI------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999887 55567788899999999999999999999988763
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.18 E-value=2.6e-10 Score=84.32 Aligned_cols=74 Identities=28% Similarity=0.553 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.+.++.++|.+|..+|+|++|+++|++++++.+..++.. ..+.+++++|.+|..+|++++|++++++++++.++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 678899999999999999999999999999976776544 46899999999999999999999999999998864
No 11
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=2.5e-10 Score=103.45 Aligned_cols=104 Identities=25% Similarity=0.360 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735 205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 284 (322)
Q Consensus 205 ~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d 284 (322)
....+..+-.-|+-.+..++|.+|+..|.+|+++.|. .+..|.+.+.+|.++|.|+.|++.++.+|.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 4456777788999999999999999999999999998 8889999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 285 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+|....+|..||.+|..+|++++|++.|++||++-+
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999998754
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.15 E-value=6.8e-10 Score=113.23 Aligned_cols=99 Identities=9% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
..++.+|.+++..|++++|+..|++++++.|. ...++.++|.++..+|++++|+..|+++++. .|..+
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~ 467 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAP 467 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCh
Confidence 35556666666666666666666666666555 4555666666666666666666666666665 55556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+++++|.++..+|++++|+++|++++++.+
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 6666677777777777777777777766543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.14 E-value=8.2e-10 Score=112.62 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735 163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 242 (322)
Q Consensus 163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~ 242 (322)
...+.......+.+.++..|++++...|. ....++.+|.++...|++++|+..|++++++.+.
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~- 397 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPR----------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE- 397 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 33333444445889999999999998876 5668889999999999999999999999998877
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
...+++++|.+++..|++++|+.+|++++++ .|....++.++|.++..+|++++|+..|+++++..++
T Consensus 398 -----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 398 -----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 6788999999999999999999999999999 7778889999999999999999999999999987653
No 14
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.13 E-value=1.8e-10 Score=108.08 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.-.++.++|++|.-.|+++.|+++|+..+.++.++++....++..|.||+.|....++++||+|+.+-+.|+.+.+|..+
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33456778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
...+++.||..|..+|..++|..+.++.+++..
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888877643
No 15
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=99.14 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 234 (322)
Q Consensus 155 r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~k 234 (322)
-+...+.+.+++....+..++++|+..|.++|.+.|. .+..+-+.|.+|.++|.|+.|++-.+.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3456668888899999999999999999999999988 677778899999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH
Q 020735 235 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 306 (322)
Q Consensus 235 Al~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e 306 (322)
++.+.+. ...+|..||.+|..+|++++|++.|+++|++ +|.......+|.++-.++++..
T Consensus 141 Al~iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLel------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALEL------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999 9999999999999999999999999999999 8888888999999988888766
No 16
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.12 E-value=7.2e-10 Score=104.05 Aligned_cols=138 Identities=17% Similarity=0.260 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+.+.+.|..-+....+ .++...+..++-++|+.||-+|+|+.|+.+.+.-++++++.+|....-.++.
T Consensus 170 al~~Av~fy~eNL~l~~~----------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s 239 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEK----------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS 239 (639)
T ss_pred HHHHHHHHHHHHHHHHHH----------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 677788888888888888 7777778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|||+++.-+|+++.|+++|++.+.++.++++....+...|.||..|....++++|+.|+++=+.|+++
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988763
No 17
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=7.9e-09 Score=101.83 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKA 251 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a 251 (322)
+..+++..|++++..... ........-+..+.++|..|+..|++++|..++++|+++.... .........
T Consensus 256 k~~eAv~ly~~AL~i~e~--------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREE--------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred cHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 668888889999987654 1223445567789999999999999999999999999999873 344556777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+.+++.++..++++++|+.++++++++.... .+++..+..+.+||.+|...|+|++|.++|++|+++.+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998853 34446888999999999999999999999999999875
No 18
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.10 E-value=7.1e-09 Score=95.78 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 160 QRVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 238 (322)
Q Consensus 160 ~~l~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l 238 (322)
..+.++....+... +.+.+.+.|.++...... .++....+..+...+.+|... ++++|+++|++|+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~ 103 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI 103 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH
Confidence 34444444444444 778888888888887765 455555666777777777666 999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 239 AQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 239 ~~~~~d~~~~~~a~~~LG~~~~~~-gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
+...++....+.++..+|.+|... |++++|+++|++|+++.+..+.......++..+|.++..+|+|++|++.|++...
T Consensus 104 y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 104 YREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999887777888999999999999999999999999876
Q ss_pred h
Q 020735 318 R 318 (322)
Q Consensus 318 i 318 (322)
.
T Consensus 184 ~ 184 (282)
T PF14938_consen 184 K 184 (282)
T ss_dssp T
T ss_pred H
Confidence 4
No 19
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-09 Score=103.96 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
+..+++.+|..|-..+-+.-|+-+|++|+++-|. ....+..||.+|.+.++.++|+++|..|+.. ...
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~------~dt 464 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWVALGECYEKLNRLEEAIKCYKRAILL------GDT 464 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHhccHHHHHHHHHHHHhc------ccc
Confidence 7778888899988888888888899998888887 7888888999999999999999999998877 444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
...+++.||.+|.++++.++|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999988743
No 20
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=4.9e-09 Score=89.15 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
.....+..++.+|.++...|++++|+..|++++.+.+. +...+.++.++|.++...|++++|+.++++++++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----- 101 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----- 101 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 34446788899999999999999999999999998543 3335668999999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhhh
Q 020735 284 EYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 284 d~~~~a~a~~~Lg~~y~-------~~gd~e~A~~~~~kAl~i~e 320 (322)
.+.....+.++|.+|. .+|++++|..++++++..++
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5555666777777777 88999988888887776543
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.3e-09 Score=100.83 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.|.++..|++++.+.|. ...++--+|.-|....+-..|++.|++|+++.|. .-.++|
T Consensus 345 eHEKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWY 402 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWY 402 (559)
T ss_pred hHHHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHh
Confidence 558888999999998887 6677778899999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+||..|-.++.+.=|+-+|++|+++ .|.....+..||.||.++++.++|++.|.+|+..-
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 89999999999999999999999999999998654
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=3.8e-10 Score=111.10 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.++..+++++...+. .++++--+|.-+..+.+||+|..+|++|+...++ .-.|||
T Consensus 436 dh~~Aik~f~RAiQldp~----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------hYnAwY 493 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPR----------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------HYNAWY 493 (638)
T ss_pred HHHHHHHHHHHhhccCCc----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------hhHHHH
Confidence 556777777777776664 2223333344444444444444444444444444 444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
+||.+|.++++++.|.-+|++|+++ +|........+|..+..+|+.++|+.+|++|+.
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcC------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 4444444444444444444444444 444444444444444444444444444444443
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=2.6e-09 Score=101.96 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
+...|...+..|+|++|+++|.+++++.+. ...+++++|.+|..+|++++|+..+++++++ .+..+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHH
Confidence 456789999999999999999999999988 7889999999999999999999999999999 8888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|+++|.+|..+|+|++|+.+|++++++.+.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999987654
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.03 E-value=5.1e-09 Score=77.30 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
.+.++.++|.+|..+|++++|+++|++++++....++.. ..+.++.++|.++..+|++++|++++++++++.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 466889999999999999999999999999988888765 4689999999999999999999999999999865
No 25
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=1.1e-08 Score=87.45 Aligned_cols=107 Identities=19% Similarity=0.332 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
.+....+..++.+|..+...|++++|+.+|++++++.+... ....++.++|.++...|++++|+.++++++++
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34455778899999999999999999999999999876522 23568999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh
Q 020735 283 GEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISR 318 (322)
Q Consensus 283 ~d~~~~a~a~~~Lg~~y~~~gd-------~e~A~~~~~kAl~i 318 (322)
.+....++..+|.+|...|+ +++|...|+++++.
T Consensus 102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 67677888899999988776 44444444444443
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=1.3e-08 Score=88.43 Aligned_cols=98 Identities=21% Similarity=0.228 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
...+..+|.++...|++++|...+.++++..+. ...++..+|.++...|++++|+.+++++++. .+..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~ 202 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYLRGQYKDARAYLERYQQT------YNQT 202 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence 446777899999999999999999999988766 5667888999999999999999999998887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
...+..++.++...|++++|..+.+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 203 AESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666778889999999999999888776654
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=3.2e-09 Score=77.96 Aligned_cols=98 Identities=27% Similarity=0.394 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
+++.+|..+...|++++|+..++++++..+. ...+++.+|.++...+++++|++++++++.+ .+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchh
Confidence 4677899999999999999999999998776 4578899999999999999999999999987 555557
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
++..+|.++...|++++|..+++++++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 899999999999999999999999987653
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.00 E-value=4.3e-09 Score=106.09 Aligned_cols=95 Identities=17% Similarity=-0.018 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
++..+|.++...|++++|+..|++++++.|. .+.+++++|.++...|++++|+..+++++++ +|....
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------~P~~~~ 407 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKL------DPTRAA 407 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCChh
Confidence 3444444444445555555555555444444 4444444454444455555555555554444 333333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
+++.++.++...|++++|+..++++++
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333334444444445444444443
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.99 E-value=5.3e-09 Score=111.09 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
...+.++|.++...|++++|+..|++++++.|+ ...++.++|.++...|++++|++.|++++++ .|..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------~P~~ 676 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKG------LPDD 676 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCC
Confidence 346788999999999999999999999999998 8889999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+.+++++|.++..+|++++|+.+|++++++.++
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999987653
No 30
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=5.9e-09 Score=86.69 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735 166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 245 (322)
Q Consensus 166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~ 245 (322)
.......++.+.++..|++++...|. ...++..+|.++...|++++|+..|++++++.+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---- 90 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---- 90 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----
Confidence 33444455778899999999988877 6778999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735 246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 302 (322)
Q Consensus 246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~ 302 (322)
.+.+++++|.++...|++++|++.|++++++ .|..+..+.++|.+...+
T Consensus 91 --~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~------~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 --HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM------SYADASWSEIRQNAQIMV 139 (144)
T ss_pred --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 888888888888877654
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.7e-09 Score=102.56 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=106.1
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAAR 253 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-~~~~a~~ 253 (322)
.+-+-.-|..++.++|. +......+|.+.+..+.|.+|..+|+++++..+...... ...-.+.
T Consensus 396 ~kLAe~Ff~~A~ai~P~----------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPS----------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHHHHHHhcCCC----------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 34455566777777766 455677899999999999999999999998777765443 3455689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|||+++++++.+++||.+|+++|.+ .+..+.++..+|.+|..+|+++.|+++|.+|+.+.+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999 8888999999999999999999999999999987654
No 32
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=4.3e-08 Score=96.71 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--hHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKK-EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD--PIEEKK 250 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~-~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d--~~~~~~ 250 (322)
+.+++...|++++..... ..+... ..+....++|..|+..|+|++|.+.|++|+.+.++..+ ......
T Consensus 340 ~~Eea~~l~q~al~i~~~---------~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLD---------APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred chhHHHHHHHHHHHHHHh---------hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 668888888888887653 122222 45667788999999999999999999999999988766 456788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 251 AARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~-~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+++||..|.+.+++.+|...|.+++.+.+.. .+.++....|.|||.+|..+|++++|.++-++++...+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999654 46778889999999999999999999999999986543
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=98.98 E-value=7.4e-09 Score=104.40 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...+++.+|.++...|++++|+..+++++++.|. ...+++.++.+++..|++++|+..++++++. .++.
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~ 439 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQD 439 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-----cccc
Confidence 3456788999999999999999999999999887 4445556676788899999999999998766 1355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
.+.++.++|.+|..+|++++|...+++....
T Consensus 440 ~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 440 NPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 6778999999999999999999999887544
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1e-08 Score=80.85 Aligned_cols=106 Identities=24% Similarity=0.243 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
..++.+|..+...|++++|+..|.++++..+. ......+++.+|.++...|++++|+.+|++++...+ +.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence 35788999999999999999999999987653 233467889999999999999999999999987722 233346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.+++.+|.++...|++++|..+++++++..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 78999999999999999999999999987654
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=4.6e-09 Score=75.56 Aligned_cols=66 Identities=30% Similarity=0.451 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRL 319 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g-d~e~A~~~~~kAl~i~ 319 (322)
.+.++..+|.+++..|+|++|+.+|++++++ +|..+.+++++|.+|..+| ++++|++++++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3567999999999999999999999999999 8999999999999999999 7999999999999875
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=1.5e-08 Score=94.34 Aligned_cols=128 Identities=15% Similarity=0.059 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
..+.+......++.+.++..|++++...|. ...+++.+|.++...|++++|+..|++++++.|+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT 130 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 334444444445778899999999998877 5778999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
...++.++|.+++..|++++|++.+++++++ .|..+.. .....+....+++++|...+++++..
T Consensus 131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~------~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD------DPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999988 4443321 11122345678999999999887654
No 37
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.95 E-value=7.5e-09 Score=77.72 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=70.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735 221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 300 (322)
Q Consensus 221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~ 300 (322)
.+|+|++|+.+++++++..+. +. ....++++|.++++.|+|++|++.+++ ++. .+....+.+.+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLL 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHH
Confidence 368999999999999999885 11 455677899999999999999999999 555 5556777888899999
Q ss_pred HcCCHHHHHHHHHHH
Q 020735 301 ELGDLERAARFYDKY 315 (322)
Q Consensus 301 ~~gd~e~A~~~~~kA 315 (322)
.+|++++|++.+++|
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999886
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=9.9e-10 Score=106.76 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
.+..++..+|..|+..++|++|+++|+.||...|. ....|+.||.++..-.+..+||..|++|+++ .|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP 495 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQL------QP 495 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CC
Confidence 34557788999999999999999999999999998 8889999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+...+.||||.+|+.+|.|++|.++|-.||.+-++
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999987653
No 39
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=6.7e-07 Score=81.77 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=91.3
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 210 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 210 ~~~~~la~~y-~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
...+..|..+ +..|+|++|+..|++.++.+|+ ..+...+++++|.+|+..|+|++|+..|+++++..+ +.+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcch
Confidence 4567777765 6679999999999999998886 344567899999999999999999999999887733 46668
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.++++.+|.+|..+|++++|...|++.++.+++
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 899999999999999999999999999987653
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.2e-08 Score=89.40 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735 206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285 (322)
Q Consensus 206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~ 285 (322)
.+-+.+.+.+|.-|+..|++..|...+++|++.+|+ ...++..++.+|...|+.+.|-+.|++|+.+ .
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------~ 99 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSL------A 99 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------C
Confidence 345667888999999999999999999999999999 8899999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 286 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
|...++++|-|+-...+|++++|..+|++|+.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 88899999999999999999999999999985
No 41
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=1.6e-07 Score=78.02 Aligned_cols=99 Identities=26% Similarity=0.298 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...+.+.+|..++..|++++|...|+++++.. .+......+...|+.++...|+|++|+..++.. .+.+.
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~ 116 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAF 116 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcch
Confidence 45678889999999999999999999999844 456667788999999999999999999999662 23455
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
.+.++..+|.+|...|++++|+..|++||
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67788899999999999999999999985
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=2.1e-08 Score=102.86 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
.+.+++...++.++..+|. ...+..+.|.+..+.+++++|+..+++++...++ ...++
T Consensus 100 g~~~ea~~~l~~~~~~~Pd----------------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~ 157 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPD----------------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREI 157 (694)
T ss_pred CCcHHHHHHHHHHHhhCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHH
Confidence 3778899999999999998 7889999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+.+|.++...|+|++|++.|++++.- .+..+.++..+|.++...|+.++|...|+++++...
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999885 777889999999999999999999999999998753
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=4.5e-09 Score=103.66 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=105.0
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 254 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~ 254 (322)
.+.+...|++++...+. ...+|+.+|.+|.++++++.|+-+|++|+++.|. .......
T Consensus 471 ~d~a~~~fr~Al~~~~r----------------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~ 528 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPR----------------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCH 528 (638)
T ss_pred HHhHHHHHHhhhcCCch----------------hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhh
Confidence 34555556666655544 7789999999999999999999999999999998 8888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+|.++.+.|+.++|+..|++|+.+ ++..+.+.+..|.++..++++++|...+++.-+++++
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~l------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHL------DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhc------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999 8888899999999999999999999999988877654
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.90 E-value=2.1e-08 Score=103.11 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
++..+|.++...|++++|+..+++++++.|. ...++.++|.++...|++++|+..|+++++. .|....
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~~~ 353 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVTSK 353 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CccchH
Confidence 3444455555555555555555555544444 3444444555555555555555555554444 333333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
.+..+|.++...|++++|+..|++++++
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444455555555555555555555544
No 45
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.88 E-value=4.2e-08 Score=90.65 Aligned_cols=116 Identities=25% Similarity=0.329 Sum_probs=100.1
Q ss_pred cHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 205 KKEEL-LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 205 ~~~~a-~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
+...+ ..+...|..|...+++++|.+.|.++.++..+.++....+.++...+.+|.+. ++++|+++|++++++..+.+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 33343 45556888999999999999999999999999999999999999999888776 99999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 020735 284 EYSGSTEAYGAIADCYTEL-GDLERAARFYDKYISRLES 321 (322)
Q Consensus 284 d~~~~a~a~~~Lg~~y~~~-gd~e~A~~~~~kAl~i~e~ 321 (322)
+....+.++..+|.+|... |++++|+++|++|+++++.
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999 9999999999999998864
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=5.1e-08 Score=86.98 Aligned_cols=141 Identities=15% Similarity=0.107 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
.+...+.......+.+.++..+++.+...|.. .....+++.+|.+++..|++++|+..|+++++..|
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFS-------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 44444555555667888899999988877651 11234678899999999999999999999999888
Q ss_pred hCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCCchHHH--------------HHHHHHHH
Q 020735 241 NVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYSGSTE--------------AYGAIADC 298 (322)
Q Consensus 241 ~~~d~~~~~~a~~~LG~~~~~~--------gd~~eAi~~~~kaL~l~~~~~d~~~~a~--------------a~~~Lg~~ 298 (322)
+... ...+++.+|.++... |++++|++.+++++...+. ...... ....+|.+
T Consensus 102 ~~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 102 NHPD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred CCCc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6332 345788999999876 8899999999999877332 111111 22478999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh
Q 020735 299 YTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 299 y~~~gd~e~A~~~~~kAl~i~e 320 (322)
|...|++++|+..|+++++..+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCC
Confidence 9999999999999999998764
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.88 E-value=3.6e-08 Score=101.38 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHhCCC
Q 020735 169 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKD 244 (322)
Q Consensus 169 ~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~----Al~~~~kAl~l~~~~~d 244 (322)
+....+.++++..|++++...+. ....++.+|..+...|++++ |+..|++++++.|.
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~----------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~--- 282 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLD----------------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD--- 282 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---
Confidence 33444788999999999999877 56788899999999999996 89999999999988
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 245 ~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
...++.++|.++...|++++|+.++++++++ .|..+.++.++|.+|...|++++|+..|+++++..+
T Consensus 283 ---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 ---NVRIVTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 7889999999999999999999999999998 777888999999999999999999999999987543
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=1.2e-08 Score=73.44 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQI 278 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g-d~~eAi~~~~kaL~l 278 (322)
.+..+..+|..++..|++++|+.+|++++++.+. .+.+++++|.++..+| ++++|++++++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3567889999999999999999999999999998 8999999999999999 799999999999988
No 49
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.85 E-value=3.4e-07 Score=85.13 Aligned_cols=136 Identities=25% Similarity=0.284 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--Ch--HHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DP--IEEK 249 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~--d~--~~~~ 249 (322)
..+.+++.|++++.++.. .++..-+..++..+|..|-...|+++|+.+..+|.++....+ |. .+..
T Consensus 137 ~fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 447777888888887765 444444566778899999999999999999999999998875 32 3466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+++.++..+..+|....|.++.+++.+++-..+|.+..+.+...+|++|...||.|.|..-|+.|..+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998754
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.85 E-value=4.9e-08 Score=106.41 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH------
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------ 247 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~------ 247 (322)
+.++++..|++++...|. ...++..+|.+|...|++++|+.+|++++++.++......
T Consensus 284 ~~~~A~~~l~~aL~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPK----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 678888999999988776 5668899999999999999999999999998876433210
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 248 --EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 248 --~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.......+|.++...|++++|+..|++++++ +|....++..+|.+|...|++++|+++|++++++.+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1123446688999999999999999999999 7777889999999999999999999999999987543
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.79 E-value=2.2e-07 Score=88.79 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
....+..+|..+...|++++|+.+|+++++..+. ...+++.+|.++...|++++|++.++++++. .+.
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~ 246 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQ------DPE 246 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------Chh
Confidence 3445667888888999999999999999887766 5667888899999999999999999998876 333
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 288 -STEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 288 -~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
...++..++.+|...|++++|...++++++..+
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 356678889999999999999999998887643
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.78 E-value=5.9e-07 Score=85.83 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
....+..+|..|...|++++|+..|+++++..+. ...++..++.++...|++++|++.++++++..... ....
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 178 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVE 178 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHH
Confidence 3456777888888888888888888888776444 56677888888888888888888888877652210 1112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
....+..+|.++...|++++|..+|+++++..+
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 344667888888889999999999998887654
No 53
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.77 E-value=8.2e-08 Score=91.64 Aligned_cols=114 Identities=12% Similarity=0.170 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
+..+........+.+.+++.|++++...+. ....++++|.+|...|++++|+..+++++++.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 344455556666889999999999998877 5678899999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 303 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g 303 (322)
...+++.+|.+++.+|+|++|+.+|++++++ .+....+...++.+...+.
T Consensus 69 ------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 69 ------LAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKIA 118 (356)
T ss_pred ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999 7777888888888876663
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.75 E-value=1.6e-07 Score=99.94 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.++++..|++++...+. .......++......|++++|+..|++++++.|. ..++.
T Consensus 557 d~~eA~~~l~qAL~l~P~----------------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~ 613 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLG----------------DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYV 613 (987)
T ss_pred CHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHH
Confidence 566677777777765543 2233334566666779999999999999998873 45789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
++|.++.+.|++++|+..|++++++ .|..+.++.++|.++...|++++|+..|++++++.++
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 8888999999999999999999999999999987654
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.75 E-value=1.4e-07 Score=102.96 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH------
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------ 247 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~------ 247 (322)
+.++++..|++++...|. ...+++.+|.++...|++++|++.|++++++.+.......
T Consensus 366 ~~~eA~~~~~~Al~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNT----------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567788888888887766 4567888999999999999999999999988765321110
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735 248 ------------------------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 297 (322)
Q Consensus 248 ------------------------------~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~ 297 (322)
....+..+|..+...|++++|++.|++++++ .|..+.+++.+|.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~LA~ 503 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRLAQ 503 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Confidence 0122345677788899999999999999999 7888889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhh
Q 020735 298 CYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 298 ~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+|...|++++|+..++++++..+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999987654
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.6e-08 Score=93.17 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+..+..|.++..+.|. ...+++..|..++-.++|++|+.-|++++++.|+ ...++.
T Consensus 375 ~~~~~~~~F~~A~~ldp~----------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~i 432 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPE----------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYI 432 (606)
T ss_pred ccHHHHHHHHHHHhcCCC----------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHH
Confidence 456666777777777766 4558899999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.++...++++++++++..|+.+++- -|..+++|...|.+...++++++|.+.|++|+++-+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999988 8888999999999999999999999999999987653
No 57
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.72 E-value=5e-08 Score=69.32 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
+.+|..++..|++++|++.|+++++. .|....+++.+|.++..+|++++|+.+|++++++.+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46889999999999999999999988 88899999999999999999999999999999987653
No 58
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.71 E-value=2e-07 Score=96.83 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
..+++.+|.+|...|++++|+..|+++++..+. ...++.++|.++...|+ .+|+.++++++++ .+..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~------~~~~ 836 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKL------APNI 836 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh------CCCC
Confidence 456677788888888888888888888777665 55666677777777777 6677777777666 4444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+..+..+|.+|...|++++|.++|+++++..+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55666777777777777777777777776543
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=3.7e-07 Score=93.84 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...++..+|.+....|.+++|+..++.+++++|+ ...+..+++.++.+++++++|...+++++.. .|.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~ 152 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSS 152 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCC
Confidence 5678999999999999999999999999999999 9999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.+.+++.+|.+...+|++++|.+.|+++++
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 999999999999999999999999999996
No 60
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=1.6e-07 Score=84.70 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
.|+.|.-++..|+|.+|...|...++.+|. ..+.+.++|+||.+++.+|+|++|...|..+++ ..++.+..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence 789999999999999999999999997775 666888999999999999999999999999766 45667778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
++.||.+...+|+.++|...|++.++.++
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999998765
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.68 E-value=2.3e-07 Score=96.38 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.+++.|++.+...|. ....+..+|..+...|+ ++|+.++++++++.+. ....+.
T Consensus 785 ~~~~A~~~~~~~~~~~p~----------------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~------~~~~~~ 841 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPD----------------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN------IPAILD 841 (899)
T ss_pred CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC------CcHHHH
Confidence 456666666666665554 56678889999999999 8899999999998776 566788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.+|.++...|++++|+++|+++++. .+..+.++.+++.++...|++++|.+.++++++
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNI------APEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999998 666788999999999999999999999999863
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=2.7e-07 Score=82.34 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+..++.+|..++..|++++|+..+++++...|. ......+++.+|.++...|++++|+..|+++++..+ +.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~ 105 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPD 105 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCc
Confidence 5668899999999999999999999999987764 233456889999999999999999999999998743 2344
Q ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhc
Q 020735 288 STEAYGAIADCYTEL--------GDLERAARFYDKYISRLES 321 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~--------gd~e~A~~~~~kAl~i~e~ 321 (322)
...+++.+|.++... |++++|.+.|+++++..++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 556899999999987 8999999999999876543
No 63
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.65 E-value=5.8e-07 Score=75.16 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 157 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 236 (322)
Q Consensus 157 ~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl 236 (322)
..++.+....-.....++.+.+...|+-...+.+. ....++++|.++...|+|.+|++.|.+++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------SFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556666666667777889999999999988887 77889999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 237 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 237 ~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
.+.++ .+.+++++|.++...|+.+.|.+.|+.++.++.
T Consensus 97 ~L~~d------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 97 QIKID------APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred hcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99998 899999999999999999999999999999974
No 64
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=2.7e-07 Score=77.55 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
+-+.......+..|..++..|++++|...|+-...+.+- ...-+.+||.++..+++|++|+..|..+..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---- 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---- 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 344557888999999999999999999999887776555 5666899999999999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
....+...+..|.||..+|+.++|...|+.+++.
T Consensus 101 --~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 101 --LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 4444566889999999999999999999999863
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=1.1e-06 Score=78.44 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
..+...|......|+|.+|+..++++..+.|. ...++..+|.+|-+.|+.++|...|.+++++ .+..+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p 168 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEP 168 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCc
Confidence 34444677777778888888888877777777 7777777788888888888888888887777 66666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.++.|+|..|...||++.|..++..+..
T Consensus 169 ~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 169 SIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777788888888888877777777654
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.1e-07 Score=90.59 Aligned_cols=127 Identities=22% Similarity=0.305 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.++++..|..|-...+. --.-.+.+|.-|...+++.-|..+|.+|+.++|. .+..+.
T Consensus 361 EhdQAmaaY~tAarl~~G----------------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~ 418 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPG----------------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLH 418 (611)
T ss_pred hHHHHHHHHHHHHHhccC----------------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhh
Confidence 667888888888877765 1123567899999999999999999999999999 889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.+|.+.+..+.|.+|+.+|+++++..+...... .....+.|||.+|..++.+++|+.+|+++|.+.+++
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999997776654333 355568999999999999999999999999876543
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=6.6e-07 Score=79.92 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
.+..++.......++..++..++++....|. +...+..+|.+|.+.|++++|-..|.+++++.+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~----------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT----------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCC----------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 3444566667777899999999999999888 778999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
. .+.+..|+|..|...||++.|..++..+... .+....+-.|++.+-..+|++++|...-.
T Consensus 166 ~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 166 N------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred C------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9 8899999999999999999999999998766 56567788999999999999999987543
No 68
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=1.2e-06 Score=82.44 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g-~~~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
+.+.++..+.+++...|. ...++...+.++..++ ++++++..+.++++..++ ...++
T Consensus 52 ~serAL~lt~~aI~lnP~----------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW 109 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG----------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIW 109 (320)
T ss_pred CCHHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHh
Confidence 556777778888877776 5667777888888777 578888888888887777 66778
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 253 RGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 253 ~~LG~~~~~~gd~--~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
++.+.++...++. +++++++++++++ ++.+..++.+.++++...|++++|+++++++|++-
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 8888777777763 6778888888877 77778888888888888888888888888887753
No 69
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.8e-07 Score=82.01 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=104.4
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 254 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~ 254 (322)
-+..+...+..+...|. ++..+..+|.+|+.+|+++.|...|.+|+++.++ .+..+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~----------------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g 195 (287)
T COG4235 138 MEALIARLETHLQQNPG----------------DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLG 195 (287)
T ss_pred HHHHHHHHHHHHHhCCC----------------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHH
Confidence 34555566777777776 7788999999999999999999999999999999 8888899
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 255 LGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 255 LG~~~~~~g---d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+|.+++.+. +..++...+++++.. ++....+.+.||..+.+.|+|.+|...++.-++..+.
T Consensus 196 ~aeaL~~~a~~~~ta~a~~ll~~al~~------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 196 LAEALYYQAGQQMTAKARALLRQALAL------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999888654 477899999999999 9999999999999999999999999999999987654
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=1.4e-07 Score=67.02 Aligned_cols=60 Identities=27% Similarity=0.442 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+.+|..++..|++++|+..|+++++..|. ...+++.+|.++..+|++++|+.+|++++++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35799999999999999999999999988 9999999999999999999999999999988
No 71
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.62 E-value=1.9e-07 Score=85.83 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.++..|++++...|. +......++..+...|+++++.+.+....+..+. .+..+.
T Consensus 161 ~~~~A~~~~~~al~~~P~----------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~ 218 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD----------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWD 218 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCH
T ss_pred CHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHH
Confidence 667777888888887776 4556666777777778888877777766665554 344566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+|.++...|++++|+.+|+++++. .|..+..+..+|.++...|+.++|...+++++...
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHhccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc
Confidence 7788888888888888888888877 77777888888888888888888888888877654
No 72
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.4e-07 Score=87.33 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPI-------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~-------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
.-..|+.|++.|+|..|...|++|+...... -+.. ....++.||+.+|.++++|.+|+.++.++|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---- 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---- 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 3457999999999999999999998876532 1111 12346889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
++.+..++|.-|.++..+|+|+.|+..|++++++-+.
T Consensus 287 --~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 287 --DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred --CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999987653
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.60 E-value=1.1e-06 Score=92.08 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
++..+|..+...|++++|++.+++++++.|. ...++.+++.++...|++++|+..++++++. .|..+.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------~P~~~~ 118 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSG------APDKAN 118 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH
Confidence 3444455555555555555555555554444 3334444555555555555555555555444 333333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+..+|.++...|++++|+..+++++++.
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445555555555555555555554443
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=3.6e-07 Score=83.95 Aligned_cols=103 Identities=24% Similarity=0.350 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
....+...|.++...|+.++|+..|++++++.|+ ...+...++..+...|+++++.+.++...+.. +.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~ 212 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD 212 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence 5667888999999999999999999999999998 88889999999999999999888888876663 33
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.+..+..+|.+|..+|++++|..+|++++...++|
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccc
Confidence 33467788999999999999999999999876654
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.1e-06 Score=85.17 Aligned_cols=100 Identities=14% Similarity=0.229 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
+...-..|+.++..|+|..|+.+|.+++...|+ .+..|.|.+.+|.+++.+..|+...++++++ +|..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~ 425 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNF 425 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchH
Confidence 344455699999999999999999999999988 9999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+|..-|.++..+.+|++|.+.|+++++..+
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999997654
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1e-06 Score=84.75 Aligned_cols=125 Identities=14% Similarity=0.239 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.++..|++++.+.|. .+..+..++...|++++++++...|+++++..|. .+..+.
T Consensus 409 q~e~A~aDF~Kai~L~pe----------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~ 466 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPE----------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYN 466 (606)
T ss_pred HHHHHHHHHHHHhhcChh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHH
Confidence 778999999999998887 5556666666666666666666666666666665 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------------------------cCCCchHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISER-----------------------------------EGEYSGSTEAYGAIADC 298 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~-----------------------------------~~d~~~~a~a~~~Lg~~ 298 (322)
..|.++..++++++|++.|++++++.+. ..-+|..-.++..||.+
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 5566666666666666666665554332 01156666788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh
Q 020735 299 YTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 299 y~~~gd~e~A~~~~~kAl~i~e 320 (322)
-..+|+.++|+++|++++.++.
T Consensus 547 ~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.1e-07 Score=85.76 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+.++..|++++...|.-... ...--.......+-..|+-.++.|+|.+|.+.|..++.+.|.. ..-.+..|.
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~s----k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~ 291 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKS----KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYG 291 (486)
T ss_pred chHHHHHHHhhhhccChhhhhH----HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHH
Confidence 5577888899999887761000 0001112244556668999999999999999999999999973 334678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
|.+.+..++|+.++|+...+.++++ ++....+|...|.||..+++|++|.++|+++++.-
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999 89999999999999999999999999999998753
No 78
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=5e-06 Score=66.93 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
+.+..|..+...|+.++|+.+|+++++.. + +......++.++|.++...|++++|+..+++++.- .++++....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHH
Confidence 57889999999999999999999998842 2 23345678999999999999999999999998754 233333566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
....++.+....|++++|+..+-.++
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67778999999999999999887665
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.50 E-value=4.5e-07 Score=92.97 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+.|++.|.++|...|. .+++.+.+|.++...|++.+|.+.|.++.+-..+ ...+|.
T Consensus 627 ~~~KAlq~y~kvL~~dpk----------------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~l 684 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPK----------------NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWL 684 (1018)
T ss_pred HHHHHHHHHHHHHhcCcc----------------hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceee
Confidence 446788888888888877 8889999999999999999999999999987775 567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|+|++|..+|+|..||+.|+.++.-.- .......+..||.++...|++.+|.++..+|+...+.
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~----~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFY----KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999987754 3345778999999999999999999999999887654
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.49 E-value=3.9e-06 Score=87.91 Aligned_cols=136 Identities=14% Similarity=0.031 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.++++..+++.....|..... .......++.....+.+.+|..+...|++++|++.+++++...|. ...++.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~-~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~ 397 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRL-YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRI 397 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEee-cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 5566666666666554431000 001112333345567788999999999999999999999999988 778999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.+|.++...|++++|++.+++++++ .|....+++.+|.++..+|++++|...++++++..+++
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVL------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999 78888899999999999999999999999999876643
No 81
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.9e-06 Score=80.15 Aligned_cols=152 Identities=17% Similarity=0.236 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 154 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK 233 (322)
Q Consensus 154 ~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~ 233 (322)
.+.....+..+.+..+++..++..|...|++++.+..........+ ..........+++|++.+|.++++|.+|+..-.
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee-~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE-QKKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH-HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 3455556777888899999999999999999998765310000000 000111234578999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 020735 234 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFY 312 (322)
Q Consensus 234 kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A-~~~~ 312 (322)
++|++.+. ...++|.-|.++..+|+|+.|+..|++++++ .|.+-.+...|..+.....++.+. .+.|
T Consensus 282 kvLe~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 282 KVLELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHhcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999 777777777887777776666544 7777
Q ss_pred HHHHHh
Q 020735 313 DKYISR 318 (322)
Q Consensus 313 ~kAl~i 318 (322)
.+....
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 776654
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=83.31 Aligned_cols=103 Identities=23% Similarity=0.237 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+.++.+.|++-+..|++++|.+.|++++.-... ...+++|+|..+-.+|+.++|+++|-+.-.+ ...
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas------c~ealfniglt~e~~~~ldeald~f~klh~i------l~n 556 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS------CTEALFNIGLTAEALGNLDEALDCFLKLHAI------LLN 556 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------HHh
Confidence 4566777888888899999999999988875555 7788999999999999999999999887777 445
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.+.+++.++.+|..+.+..+|++++-++..+.++|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 67888889999999999999999998888777654
No 83
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.2e-06 Score=73.02 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+-.-|+.++..|+|.+|..-|..|+++.|.... ...+..|.|.|.+..+++.++.||+.+.++|++ .|....
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~k 169 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEK 169 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHH
Confidence 4445699999999999999999999999987544 456677889999999999999999999999999 898999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
++...|.+|.+...|++|++.|++.+++.+
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999987654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=2.1e-06 Score=81.09 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.......+|.++...|++++|+..+++++++.++ ...++..+|.+++..|++++|+.+++++++..+. +...
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~ 184 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSML 184 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccch
Confidence 4556677899999999999999999999999988 6788999999999999999999999999887432 1122
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
....+..+|.++...|++++|...|++++.
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345678899999999999999999999864
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=5e-06 Score=67.37 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735 167 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 246 (322)
Q Consensus 167 ~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~ 246 (322)
.......+.+.+.+.+++++...+. ....+..+|.++...|++++|+..++++++..+.
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----- 83 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPY----------------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD----- 83 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence 3344444667788888888877665 5668889999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
....++++|.++...|++++|+..+++++++
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 -DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999998
No 86
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.38 E-value=8.4e-06 Score=65.87 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+-..|......|+.+.|++.|.+++.++|+ .+.+|+|.+..+..+|+.++|++.++++++++... ......
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3445678888899999999999999999998 89999999999999999999999999999995421 123456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
++...|.+|..+|+-+.|...|+.|-++
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 7889999999999999999999998764
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=9.3e-06 Score=74.89 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhHhhhcccCCC----CCccccccCCcH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSR----IPEDEVIVDPKK--------------EELLSRLKTGKNFLRNQDLEKAFTEFKAA 235 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~----~~~~~~~~~~~~--------------~~a~~~~~la~~y~~~g~~~~Al~~~~kA 235 (322)
+.+.+++.|+.+++..+.... ++-.....++.+ .......++|.+++..+++|-++..|++|
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 667788888888877654211 111111111111 02235678999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 236 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 236 l~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
+..+.. +...++.|||||.+....||+.-|..+|+-++.- ++...++++|||..-...|+.++|..+++.|
T Consensus 385 lstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 385 LSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 997764 2336778999999999999999999999999877 8889999999999999999999999999988
Q ss_pred HHhhh
Q 020735 316 ISRLE 320 (322)
Q Consensus 316 l~i~e 320 (322)
-+..+
T Consensus 456 ~s~~P 460 (478)
T KOG1129|consen 456 KSVMP 460 (478)
T ss_pred hhhCc
Confidence 76543
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=3e-06 Score=74.24 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=80.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HH
Q 020735 222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YT 300 (322)
Q Consensus 222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~-y~ 300 (322)
.++.++++..++++++..|+ ...++..||.+|...|++++|+..|++++++ .|..+.++.++|.+ |.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Confidence 56778999999999999998 8899999999999999999999999999999 88889999999997 47
Q ss_pred HcCC--HHHHHHHHHHHHHhhhc
Q 020735 301 ELGD--LERAARFYDKYISRLES 321 (322)
Q Consensus 301 ~~gd--~e~A~~~~~kAl~i~e~ 321 (322)
..|+ +++|.+.+++++++-++
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~ 142 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDAN 142 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCC
Confidence 7787 59999999999987654
No 89
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.34 E-value=9.1e-06 Score=66.88 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
...++..|...+..|+|++|++.|+......|- ......+...|+.+|+..++|++|+..+++-|++.+ .++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCc
Confidence 457788999999999999999999998876654 455667899999999999999999999999999944 35567
Q ss_pred HHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhhc
Q 020735 289 TEAYGAIADCYTELGD---------------LERAARFYDKYISRLES 321 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd---------------~e~A~~~~~kAl~i~e~ 321 (322)
..+++..|.++..+.+ ..+|...|++.++.+++
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 8899999999999987 88999999999887764
No 90
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.33 E-value=8e-06 Score=71.77 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
....++..|..++..|+|++|+..|++.+...|. +.....+.+.+|.+++..|+|++|+..+++.++..+ +.+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---NSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---T-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcc
Confidence 4567889999999999999999999999998775 445677899999999999999999999999887744 4666
Q ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhc
Q 020735 288 STEAYGAIADCYTELG-----------DLERAARFYDKYISRLES 321 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~g-----------d~e~A~~~~~kAl~i~e~ 321 (322)
...+++.+|.++..+. ...+|...|+..++.+++
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 8889999999976653 334788888888877654
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=5.4e-06 Score=86.60 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---------- 242 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~---------- 242 (322)
.+.++++.....++...|. .+..++.+|.+++..+++++|... +++.+.+..
T Consensus 45 ~~~deai~i~~~~l~~~P~----------------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKK----------------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred CCHHHHHHHHHHHHHhCCc----------------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 3667777777778877777 666788888898888888877665 445444332
Q ss_pred ---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 243 ---KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 243 ---~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
++......+++.||.+|-++|++++|+..|++++++ ++..+.+++++|..|... +.++|.+++.+|+..+
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 122224478999999999999999999999999999 899999999999999999 9999999999999764
No 92
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=2.1e-06 Score=81.87 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
-..+++++|..+-.+|+.++|+++|-+.-.+... .+..++.++.+|-.+.+..+||+++.++..+ -|.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~sl------ip~ 590 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSL------IPN 590 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc------CCC
Confidence 4568999999999999999999999999888888 8899999999999999999999999999887 677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+..+..||.+|...||..+|..++-...+.+
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryf 622 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYF 622 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 77888889999999998888887765555443
No 93
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.32 E-value=2.3e-06 Score=82.41 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST---EAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a---~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
...+++|+|.+|+..|+|++|+..|+++|++ +|... .+|+|+|.+|..+|++++|++++++|++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555 33333 2355555555555555555555555554
No 94
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.31 E-value=7.2e-06 Score=61.35 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.++..+++.+...+. +. ....++.+|.+|+..|+|++|+..+++ .+..+. .....+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~-------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~ 62 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPT-------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHY 62 (84)
T ss_dssp -HHHHHHHHHHHHHHHCG-------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCC-------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHH
Confidence 456677778888776653 11 344677799999999999999999999 767666 677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMV 275 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~ka 275 (322)
.+|.++..+|+|++|++.++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 8899999999999999999875
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.30 E-value=1.6e-05 Score=71.94 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
....+..|..++..|+|++|++.|++.+..+|. +.....+.+++|.+|++.++|++|+..+++.++..+ +++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P---~~~~~ 105 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNI 105 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---CCCch
Confidence 445778899999999999999999999997775 456677789999999999999999999999988844 46678
Q ss_pred HHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHhhhc
Q 020735 289 TEAYGAIADCYTELG---------------DL---ERAARFYDKYISRLES 321 (322)
Q Consensus 289 a~a~~~Lg~~y~~~g---------------d~---e~A~~~~~kAl~i~e~ 321 (322)
..+++.+|.++..++ |. .+|...+++.++.+++
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence 899999999876554 22 4677888888877653
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.28 E-value=1.1e-05 Score=76.18 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.+...+++++...|. ...++.. +..+...+++..+.....+++.. ..........++.
T Consensus 58 ~~~~A~~~~~~~l~~~P~----------------~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~ 118 (355)
T cd05804 58 DLPKALALLEQLLDDYPR----------------DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLG 118 (355)
T ss_pred CHHHHHHHHHHHHHHCCC----------------cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHH
Confidence 566778888888887765 2233333 66666666666666666666554 2223333566778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+|.++..+|++++|+..+++++++ .|..+.++..+|.+|...|++++|..+++++++..+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 8999999999999999999999999 666788899999999999999999999999988653
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.28 E-value=6.4e-05 Score=73.07 Aligned_cols=117 Identities=16% Similarity=0.126 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH-HHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK-KAA 252 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~-~a~ 252 (322)
+.+.+.....++....+. ....++..|..+..+|++++|.++++++.+..+. .. .+.
T Consensus 99 ~~~~A~~~l~~~~~~~~~----------------~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~------~~l~~~ 156 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAE----------------PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN------DNILVE 156 (409)
T ss_pred CHHHHHHHHHHHhhcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------CchHHH
Confidence 556666666665554443 3445667899999999999999999999876664 21 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
...+.++...|++++|...+++.++. .|..+.++..++.+|...||+++|.+.+++.++.
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 44588999999999999999999888 7777889999999999999999999999888754
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.28 E-value=1.6e-05 Score=67.73 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=65.8
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.........+.+++++|..+...|++++|+.+|++++++... .+..+.++.++|.+|...|++++|+.+|++++++.
T Consensus 26 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 26 LPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344555667888999999999999999999999999987432 22346789999999999999999999999999875
Q ss_pred h
Q 020735 320 E 320 (322)
Q Consensus 320 e 320 (322)
+
T Consensus 103 p 103 (172)
T PRK02603 103 P 103 (172)
T ss_pred c
Confidence 4
No 99
>PLN02789 farnesyltranstransferase
Probab=98.24 E-value=2.4e-05 Score=73.60 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=102.0
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~--~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
.++++..+.+++...++ ...++...+.++...++. +++++++.+++++.++ ...++
T Consensus 88 l~eeL~~~~~~i~~npk----------------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW 145 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK----------------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAW 145 (320)
T ss_pred HHHHHHHHHHHHHHCCc----------------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHH
Confidence 46778888888888777 566788888888888874 7889999999999998 89999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhhc
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLES 321 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~---gd~----e~A~~~~~kAl~i~e~ 321 (322)
.+.|.++...|+|++|++++.++|++ ++....+|+..+.+.... |++ ++++.+..++|.+.++
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~ 215 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR 215 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999 888899999999998876 333 5788888899987654
No 100
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=3.9e-06 Score=77.32 Aligned_cols=125 Identities=11% Similarity=0.124 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV----------- 242 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~----------- 242 (322)
+.+.++..+.+.++..|. +...+...|.++-..+++++|+++|+.++++.+..
T Consensus 271 QP~~AL~~~~~gld~fP~----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPF----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred cHHHHHHHHhhhhhcCCc----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 445566666666665554 34444455555555555555555555555544330
Q ss_pred --CChH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCH
Q 020735 243 --KDPI---------------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 305 (322)
Q Consensus 243 --~d~~---------------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~ 305 (322)
++.+ ..++.++|+|.+....++++-++..|++++..+.. +...+++|||||.+....||+
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccch
Confidence 0000 03445666666666666677777777666666442 223456677777777777777
Q ss_pred HHHHHHHHHHHH
Q 020735 306 ERAARFYDKYIS 317 (322)
Q Consensus 306 e~A~~~~~kAl~ 317 (322)
.-|...|+-++.
T Consensus 412 nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 412 NLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHHHhc
Confidence 777766666653
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.24 E-value=5e-05 Score=80.75 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC--
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-- 285 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~-- 285 (322)
...+...+|.++...|++++|...+++++...+..++......++.++|.++...|++++|..++++++++....+..
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 445667899999999999999999999999999888887778889999999999999999999999999998876532
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+.....+..+|.++...|++++|...+++++.+.+
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 33445567889999999999999999999987654
No 102
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=1.6e-05 Score=79.36 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=85.5
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHhCCChH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD--------LEKAFTEFKAALELAQNVKDPI 246 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~--------~~~Al~~~~kAl~l~~~~~d~~ 246 (322)
.+.+++.+++++...|. .+.++-.++.+|..... ..++.+..++++.+ ....
T Consensus 358 ~~~A~~lle~Ai~ldP~----------------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al----~~~~ 417 (517)
T PRK10153 358 LNKASDLLEEILKSEPD----------------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL----PELN 417 (517)
T ss_pred HHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc----ccCc
Confidence 45677777888877776 45555555565544322 22333333333332 1111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+.++..+|..+...|++++|...+++|+++ .+. +.+|..+|.++...|++++|.+.|++|+.+-+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 13567888888999999999999999999999 664 68999999999999999999999999998754
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=2.5e-05 Score=75.37 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
+.+.+...+.++...++.++|.+.+++++.+.|. ......++|..+.+.|++.+|+..++..+.- +|.
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~------~p~ 406 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFN------DPE 406 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCC
Confidence 4556667899999999999999999999999997 6777889999999999999999999988766 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.+..|..||..|..+|+-.+|...+.+++.
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 788899999999998888888777766654
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=7.7e-06 Score=80.10 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+++.++..|+.+|...|. +...++.+|-..-...+..+|+..|++|+++.|. ...+.|
T Consensus 445 efdraiDcf~~AL~v~Pn----------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~Ry 502 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN----------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVRY 502 (579)
T ss_pred HHHHHHHHHHHHHhcCCc----------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeeeh
Confidence 667788888888887777 7889999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHcCCHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS----GSTEAYGAIADCYTELGDLERAAR 310 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~----~~a~a~~~Lg~~y~~~gd~e~A~~ 310 (322)
|||.++..+|.|++|+++|-.||.+.++..... ....+|-.|=.+....++.+.+..
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 999999999999999999999999988732221 122445555566666666664443
No 105
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00033 Score=64.72 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
+.-+=.+|..+....+.++|...+.+|++..++ .+.+-..+|.++...|+|++|++.++.+++- ++...
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl 248 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYL 248 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHH
Confidence 334445888888899999999999999999998 8889999999999999999999999999887 34457
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+.+...|..||..+|+.++...++.++.+...
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 88899999999999999999999999887643
No 106
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.21 E-value=5.2e-06 Score=60.04 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=53.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|..+|...++|++|++++++++.+ .|..+..+...|.+|..+|++++|.+.++++++..++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999 7888889999999999999999999999999987654
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=1.8e-05 Score=62.05 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735 166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 245 (322)
Q Consensus 166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~ 245 (322)
+.......+.+.++..|.+.+...+. ......+.+.+|.+++..|++++|+..|++++...+..
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 72 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPK-------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS--- 72 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---
Confidence 34444445777788888888876654 01124577889999999999999999999999987652
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.....+++.+|.++...|++++|+.+++++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 223567899999999999999999999999988
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.21 E-value=6e-05 Score=63.87 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735 167 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 246 (322)
Q Consensus 167 ~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~ 246 (322)
.......+.+.++..|++++...+. ......++.++|.+|...|++++|+.++++++.+.+.
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~----- 104 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF----- 104 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----
Confidence 3333445778888999999876533 1124568899999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHc
Q 020735 247 EEKKAARGLGASLQ-------RQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 247 ~~~~a~~~LG~~~~-------~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
...++.++|.++. ..|++++|+..+.+++...++.
T Consensus 105 -~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 105 -LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred -cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3444555555555 9999998988888888776653
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.21 E-value=0.00014 Score=65.80 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
............+.+.+++.|++.+...|.+ .....+.+++|.+|+..++|++|+..+++.++..|+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3344444455567788999999999888761 123346789999999999999999999999999987
Q ss_pred CCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHcCCCc-----------hHHHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQG---------------K---YREAIKYHSMVLQISEREGEYS-----------GSTEAY 292 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~g---------------d---~~eAi~~~~kaL~l~~~~~d~~-----------~~a~a~ 292 (322)
..+ ...+++.+|.++...+ | ..+|+..+++.++..++....+ ..+.-.
T Consensus 102 ~~~---~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 102 HPN---IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred CCc---hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 544 5778888998865543 2 2467778888776644321111 122224
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 293 GAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+|..|.+.|+|..|+.-++..++-.+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp 206 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYP 206 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence 4588899999999999999999887654
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.20 E-value=7.9e-05 Score=79.26 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh--HHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKA 251 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~--~~~~~a 251 (322)
+.+.+...+.+++..... .++......+...+|.+++..|++++|..++++++++....+.. ......
T Consensus 506 ~~~~A~~~~~~al~~~~~----------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 506 ELARALAMMQQTEQMARQ----------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred CHHHHHHHHHHHHHHHhh----------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 445555566666655443 34444456677889999999999999999999999998875432 233455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+..+|.+++..|++++|...+++++.+....+ ......++..+|.++...|++++|...++++.++.
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999877554 33456778889999999999999999999998764
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.19 E-value=1.6e-05 Score=83.40 Aligned_cols=101 Identities=7% Similarity=0.054 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.......+|..|...|++++|++.|+++++..|+ ...++..++..+...+++++|++.+++++.. ++.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~ 168 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAER------DPT 168 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc------Ccc
Confidence 3445566688999999999999999999998887 6677778889999999999999999998777 554
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
... +..++.++...++..+|++.|+++++..++
T Consensus 169 ~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 169 VQN-YMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred hHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 333 355566666678887799999999887654
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=6.2e-05 Score=67.27 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+.|++.|...+...|. +...+-..--+...+|+.-+|++...+.++.... ...+|.
T Consensus 101 ~~~~A~e~y~~lL~ddpt----------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EAW~ 158 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPT----------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEAWH 158 (289)
T ss_pred chhhHHHHHHHHhccCcc----------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHH
Confidence 445566666665554433 2222223334455678888999999999999988 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISRLE 320 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g---d~e~A~~~~~kAl~i~e 320 (322)
.|+.+|...|+|++|.-++++.+=+ .|..+..+..+|.++.-+| +++-|.+||.+++++.+
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999988 8888888899999988777 56789999999998875
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=5.9e-05 Score=72.68 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
....++.++...++..+|+...++++...+. ....+...+..+..+++++.|++..++++++ .|....
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~ 269 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFE 269 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHH
Confidence 4556899999999999999999999987766 5777888899999999999999999999999 888999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
+|+.|+.+|..+||+++|+...+
T Consensus 270 ~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 270 TWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999997665
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.17 E-value=4.4e-05 Score=78.14 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 237 (322)
Q Consensus 158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~ 237 (322)
++..+..+.......++.+.+...+.+.+..+|. ...+++.+|.+|-.+|+..+|...+..|--
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----------------chhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4556666666777777899999999999998887 677889999999999999999999988888
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
+.|. ...-|..++....++|.+.+|+-+|.+||+. .|.....++..+..|.+.|++..|.+.|.+.+.
T Consensus 202 L~p~------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 202 LNPK------DYELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred cCCC------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 7776 4567888888899999999999999999999 888888899999999999999999999999887
Q ss_pred hhh
Q 020735 318 RLE 320 (322)
Q Consensus 318 i~e 320 (322)
..+
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 654
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.17 E-value=6.9e-05 Score=77.34 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
+.+.+++|..|..+|+|++|..+|.+++..+++. ....++++|..|...|+++.|+.+|+++++. .|+.
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~------~p~~ 375 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ------LPNN 375 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHh------Ccch
Confidence 3344455555555555555555555554444431 1334445555555555555555555555444 4444
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 020735 289 TEAYGAIADCYTELG----DLERAARFYDKYIS 317 (322)
Q Consensus 289 a~a~~~Lg~~y~~~g----d~e~A~~~~~kAl~ 317 (322)
.+.+..||.+|...+ ..++|..+..++++
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 444555555554443 33444444444443
No 116
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.00012 Score=67.54 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
++-.+-.+|....++.+|++.-++..++.++ ......+..|+.|+..+....+.+.|+..+.+|++. ++..+.
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvR 215 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVR 215 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------Ccccee
Confidence 4445566666677777777766666665554 333445566667777777677777777777777666 666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
+-..+|.++...|+|++|.+.++.+++.
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 6666777777777777777776666543
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.16 E-value=2.5e-05 Score=71.47 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
.+++.++..|+..+..+|.. .....+++++|.+|+..|++++|+..|+++++.+|+ ......++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s-------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---s~~~~dAl 220 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDS-------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---SPKAADAM 220 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCC-------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhHHH
Confidence 46778888999999988761 012457899999999999999999999999997774 55578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+.+|.++..+|++++|+..|+++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999887
No 118
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.15 E-value=2.1e-05 Score=80.43 Aligned_cols=102 Identities=22% Similarity=0.311 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+..++..|+..+..|++++|.+.+.+++..++. ...+|+.||.+|..+||.++|...+..|-.+ +|.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~ 205 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPK 205 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCC
Confidence 4667888999999999999999999999999999 8999999999999999999999999998888 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
...-|..++....++|.+++|.-+|.+||+..++
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 7789999999999999999999999999987654
No 119
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.15 E-value=6.8e-05 Score=65.86 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
.+...........+...++..|++.+...|.+ + ....+.+.+|.+++..|++++|+..+++.++..|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-----------~--~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-----------P--YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-----------T--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----------h--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 45555666666778899999999999887761 1 1344788999999999999999999999999998
Q ss_pred hCCChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHH
Q 020735 241 NVKDPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQISEREGEYS-----------GSTEAYGAIADC 298 (322)
Q Consensus 241 ~~~d~~~~~~a~~~LG~~~~~~g-----------d~~eAi~~~~kaL~l~~~~~d~~-----------~~a~a~~~Lg~~ 298 (322)
... ....+++.+|.+++.+. ...+|+..|++.++..+...... ..+.--+.+|..
T Consensus 74 ~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 74 NSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp T-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 743 35678888888876543 34578888888776644322111 122234558999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh
Q 020735 299 YTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 299 y~~~gd~e~A~~~~~kAl~i~e 320 (322)
|...|.|..|+..++.+++.++
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHcccHHHHHHHHHHHHHHCC
Confidence 9999999999999999998665
No 120
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.15 E-value=6.1e-06 Score=58.81 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=47.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735 220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 297 (322)
Q Consensus 220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~ 297 (322)
+..|++++|+..|+++++..|. ...+++.++.+|...|++++|.+.+++++.. .+..+..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHhc
Confidence 4567888888888888888777 7777778888888888888888888887766 5555555544443
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.14 E-value=1.3e-05 Score=58.01 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=54.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 216 a~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..+|...+++++|++.+++++.+.|. ....+...|.++...|++.+|++.++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999998 8889999999999999999999999999988
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.14 E-value=3.9e-05 Score=77.45 Aligned_cols=102 Identities=25% Similarity=0.231 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcCCC
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEY 285 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~--~~~kaL~l~~~~~d~ 285 (322)
.+..++..|..+...|++.+|.+.|..|+.+.|+ ...+...+|.++.+.|+..-|.. .+..++++ +
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------d 750 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRL------D 750 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------C
Confidence 5667888999999999999999999999999999 88899999999999999888888 99999999 9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|.+.++|+++|.++..+||.++|.++|+.|+++-+.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999987653
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.13 E-value=0.00023 Score=68.95 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a-~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
++..+.....+|+++.|.++++++.+..++ ...+ ....+.++...|++++|...+++.++. .|....
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~ 188 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN------DQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPE 188 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHH
Confidence 444566669999999999999999887665 2222 223488999999999999999999888 788889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
++..++.+|...|||++|.+.+.+..+
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988777664
No 124
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=2.5e-05 Score=56.70 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735 172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA 251 (322)
Q Consensus 172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a 251 (322)
..+.+.++..+++++...+. ....++.+|.++...+++++|+..+++++...+. ...+
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~ 70 (100)
T cd00189 13 LGDYDEALEYYEKALELDPD----------------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAKA 70 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chhH
Confidence 34566677778888776655 2357788999999999999999999999998776 4478
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+..+|.++...|++++|..+++++++.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 899999999999999999999998765
No 125
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00023 Score=63.07 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 157 GELQRVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 235 (322)
Q Consensus 157 ~e~~~l~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kA 235 (322)
.+...+..+...+++.. ....+=..|-++-+.... .++.. ++...+..+...++..+..+|+..++++
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k----------~~skh-Daat~YveA~~cykk~~~~eAv~cL~~a 99 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLK----------AGSKH-DAATTYVEAANCYKKVDPEEAVNCLEKA 99 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------cCCch-hHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 34445555555555554 333344456666655543 33333 4445555555566667999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 236 LELAQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 236 l~l~~~~~d~~~~~~a~~~LG~~~~~~-gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
++++-++|.-..-+.-+..+|.+|-.- .++++||.+|+++-+..+..........++...+..-..+++|.+|+..|++
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777777788999999865 9999999999999999887665566667888899999999999999999998
Q ss_pred HHH
Q 020735 315 YIS 317 (322)
Q Consensus 315 Al~ 317 (322)
...
T Consensus 180 va~ 182 (288)
T KOG1586|consen 180 VAR 182 (288)
T ss_pred HHH
Confidence 754
No 126
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.12 E-value=0.00016 Score=67.66 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...+++.++..+..+|+.-.|.++-+++.+++-..+|....+....-+|.+|...||.+.|..-|++|..+....+|..+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhhh
Q 020735 288 STEAYGAIADCYTELGDLER-----AARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~-----A~~~~~kAl~i~e 320 (322)
...++...|.+.....-..+ |+++.++.+++++
T Consensus 285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 99999999999988776666 9999999998875
No 127
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00018 Score=62.30 Aligned_cols=131 Identities=16% Similarity=0.191 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735 153 RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 232 (322)
Q Consensus 153 ~~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~ 232 (322)
..+..+...+...+...+..+.++.+...|..++...|.. ........+.+.|.++.+++..+.|++..
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----------~~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-----------STEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----------cHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 3345566678888888899999999999999999998862 33556778889999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH
Q 020735 233 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 306 (322)
Q Consensus 233 ~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e 306 (322)
.+++++.+. ...++...+..|-+...|++|++.|++.++. +|..-.+--.+..+--..++..
T Consensus 158 sKaiel~pt------y~kAl~RRAeayek~ek~eealeDyKki~E~------dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 158 SKAIELNPT------YEKALERRAEAYEKMEKYEEALEDYKKILES------DPSRREAREAIARLPPKINERN 219 (271)
T ss_pred HhhHhcCch------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CcchHHHHHHHHhcCHHHHHHH
Confidence 999999998 8888999999999999999999999999998 7766666666655544444433
No 128
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.00013 Score=62.60 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+.+|+.....|++.+|...|++++. +.-. ....+.+++...+..+++.+|...+++..+... ....++
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~------d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p----a~r~pd 161 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAH------DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP----AFRSPD 161 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCC------CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----ccCCCC
Confidence 44566666666666666666666554 1111 334455666666666666666666666555421 111334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
....+|.+|..+|++++|...|+.+++.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4555666666666666666666666554
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.07 E-value=2.6e-05 Score=72.43 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
.++.-.+.+|..++..|++..|+..|..|++..|+ .-.+++..|.+|...|+...|+..+.++|++ .|
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------Kp 103 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KP 103 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhc------Cc
Confidence 36777889999999999999999999999999998 8889999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+...+....|.++.++|++++|...|++.|+--
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988643
No 130
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.06 E-value=7e-05 Score=72.79 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=72.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHcCCCchHHHHH
Q 020735 217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK--KAARGLGASLQRQGKYREAIKYHSM--VLQISEREGEYSGSTEAY 292 (322)
Q Consensus 217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~--~a~~~LG~~~~~~gd~~eAi~~~~k--aL~l~~~~~d~~~~a~a~ 292 (322)
......++.+++++.++++++..|+ .+ ..+..+|.++++.|+|++|.++|++ +++. .|+... +
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~~p~------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~------~p~~~~-~ 373 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKNVDD------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE------QLDAND-L 373 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc------CCCHHH-H
Confidence 3334457778888888888887776 55 6788999999999999999999995 5555 555444 5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 293 GAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
..+|.++..+|+.++|.++|++++...
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998754
No 131
>PRK11906 transcriptional regulator; Provisional
Probab=98.05 E-value=6.3e-05 Score=72.80 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRN---------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 208 ~a~~~~~la~~y~~~---------g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.+.++-.+|.+++.. .+-.+|.+..++|+++.+. .+.++..+|.+....++++.|+..|++|+.+
T Consensus 294 ~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L 367 (458)
T PRK11906 294 KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIH 367 (458)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence 455555666666543 3456778888999999998 9999999999999999999999999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+|+.+.+++..|++....|+.++|.+..++++++.+
T Consensus 368 ------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 368 ------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999998654
No 132
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.1e-05 Score=73.35 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735 166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 245 (322)
Q Consensus 166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~ 245 (322)
+...+...++..++..|.+++...|. ++..+-+.|.+|...+++..|+.-.++++++.|.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~----------------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---- 424 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPE----------------DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---- 424 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCc----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch----
Confidence 44444445667888888888887777 7888999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
...+|..-|.++..+.+|++|++.|+++++. +|....+...+..|+..+...+...+.+++
T Consensus 425 --~~kgy~RKg~al~~mk~ydkAleay~eale~------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 425 --FIKAYLRKGAALRAMKEYDKALEAYQEALEL------DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8889999999999999999999999999999 888888888888888865444444444444
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=9.8e-06 Score=57.72 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=50.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 260 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 260 ~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
...|+|++|++.|+++++. .|....+++.+|.+|...|++++|...+++++...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999 8888999999999999999999999999998876543
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.01 E-value=2e-05 Score=76.06 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK---KAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~---~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..+.+++++|..|+..|+|++|+..|++++++.|+ .. .+++|+|.+|..+|++++|++++++++++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999987 44 45999999999999999999999999987
No 135
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.00 E-value=0.00015 Score=70.33 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735 221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 300 (322)
Q Consensus 221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~ 300 (322)
..++++++++..++.++..|+ .+..+..+|.++...+++++|.++|+++++. .|... .+..++.++.
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------~P~~~-~~~~La~~~~ 372 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGD------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------RPDAY-DYAWLADALD 372 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHH-HHHHHHHHHH
Confidence 448888888888888887777 7778899999999999999999999999988 66543 4668999999
Q ss_pred HcCCHHHHHHHHHHHHHhhh
Q 020735 301 ELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 301 ~~gd~e~A~~~~~kAl~i~e 320 (322)
..|+.++|..+|++++....
T Consensus 373 ~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HcCCHHHHHHHHHHHHhhhc
Confidence 99999999999999998653
No 136
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.99 E-value=1.4e-05 Score=74.21 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 292 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~ 292 (322)
-..|+.|+.+|.|++|+++|.+++..++- .+..+.|.+.+|+++..+..|...++.|+.+ +.....+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHH
Confidence 45799999999999999999999999986 6777889999999999999999999999999 77788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 293 GAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
...|.+-..+|..++|.+.++.+|++-+
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 9999999999999999999999997643
No 137
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00016 Score=64.04 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
+..+...|+.|....+++.|-..|.++-++..+.+++...+..|...+.+|.+ .++++|+.+++++++|..+.+.-..-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44556678889999999999999999999999988888778788877777765 59999999999999999988876666
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTEL-GDLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~-gd~e~A~~~~~kAl~i~e 320 (322)
+.-+..||.+|..- .++++|+.+|+++-+.+.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 67788899999876 999999999999987664
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00041 Score=57.36 Aligned_cols=100 Identities=17% Similarity=0.057 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
+...+.........++.+.+...+++.++ +.++..+...+...+|.+++..|++++|+..|++++... .++...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~ 84 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHH
Confidence 33444445555578899988887777666 445566778889999999999999999999999998753 334456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
..+.+.||.++...|++++|+..++.
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77899999999999999999999866
No 139
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.93 E-value=0.0001 Score=77.39 Aligned_cols=129 Identities=5% Similarity=-0.045 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735 163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 242 (322)
Q Consensus 163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~ 242 (322)
.++.......++.+.+++.+++++...|. .......+..++...|++++|+.++++++.-.+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~----------------~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~- 100 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPL----------------QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI- 100 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCcc----------------chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC-
Confidence 34444445556777899999999998877 2212226777788889999999999999932122
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
....+..+|.++...|+|++|++.|+++++. +|..+.++..++.+|...++.++|++.+++++...
T Consensus 101 -----~~~~llalA~ly~~~gdyd~Aiely~kaL~~------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 101 -----SSRGLASAARAYRNEKRWDQALALWQSSLKK------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 3455666788999999999999999999999 77778888899999999999999999999987654
No 140
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00043 Score=56.10 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735 166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 245 (322)
Q Consensus 166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~ 245 (322)
.......++.+.+++.|.+++...|. .+.++++.+..+.-+|+.++|++-++++++++-.. .
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--t 111 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--T 111 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--c
Confidence 34445555888999999999999988 78899999999999999999999999999987653 3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.....++...|.+|..+|+.+.|...|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 335677889999999999999999999998776
No 141
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.00013 Score=73.34 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+.+...+|...+.+++|+++.++++..+++.+- ....|+++|.+..+.++++.|.++|..++.+ .|+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd 551 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPD 551 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCC
Confidence 3445566677777788888888888888888887 7778888888888889999999999888888 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
...+++|++-.|...++..+|...+++|++
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 888888998888888888888888888875
No 142
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.0028 Score=54.78 Aligned_cols=101 Identities=26% Similarity=0.196 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
..+.+.+|..+...+++++|+..++.++.. ..|......+-.+|+.+...+|.+++|+..+...- ++...
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w~ 158 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESWA 158 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccHH
Confidence 346678999999999999999999998873 44566777788899999999999999998887632 23334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+......|+++...||-++|+..|+++++..
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4556678999999999999999999999864
No 143
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0014 Score=58.44 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+..+...+..|....+|++|-..+.+|.+-++.....+..+.++-..+........+.|+..+|+++..+..+.+....
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34455567778888899999999999999999888888888899999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.+.++..-|.+.. .-++++|+..|++++.+++++
T Consensus 110 AAmaleKAak~le-nv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 110 AAMALEKAAKALE-NVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhcc
Confidence 7777776666554 558999999999999988754
No 144
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.86 E-value=0.0016 Score=51.80 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
+..+.-|.-.+..|-|++|...+.+|++..+.+.... ..+.++..|+..+..+|+|++++..-+++|....+.+
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 3444556677788999999999999999998775432 3566788999999999999999999999999888865
Q ss_pred CCc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 284 EYS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 284 d~~-----~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+-. ....+.++.|..+..+|+.++|++.|+.+-+++.+
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 422 24456788999999999999999999999887653
No 145
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.86 E-value=0.00083 Score=62.64 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 234 (322)
Q Consensus 155 r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~k 234 (322)
...++++..+.+.+.....+...++..|-.+++..|. ...+.+..|.+|...|+-.-|+.-+.+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~----------------~Y~aifrRaT~yLAmGksk~al~Dl~r 97 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN----------------NYQAIFRRATVYLAMGKSKAALQDLSR 97 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----------------hHHHHHHHHHHHhhhcCCccchhhHHH
Confidence 3456666667677777777888888888888877776 566777777777777777777777777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 235 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 235 Al~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
++++-|+ ...+....|.++.++|++++|+..|+++|+-
T Consensus 98 VlelKpD------F~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 98 VLELKPD------FMAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHhcCcc------HHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 7777776 6666777777777778888887777777654
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.00016 Score=69.91 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...+++..|..++..|++++|+..+...+...|+ ....+-..+.++...|+..+|++.+++++.+ +|.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~ 372 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALAL------DPN 372 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCC
Confidence 4557888999999999999999999998887776 6777788999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
......++|.+|.+.|++.+|+...+.++.-.+
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 888999999999999999999999998876544
No 147
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00019 Score=66.41 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=97.5
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
.....+.-+-.-|+-|+...+|..|.+.|.+++. .++.|+...+..|.|.+.+....|+|..|+.-..+++.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3444555666689999999999999999999887 678899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 284 d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+|....+++.=|.|+.++..+.+|..+.+..+.+..
T Consensus 149 -~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 -KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred -CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999988877653
No 148
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.82 E-value=0.00036 Score=53.57 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735 218 NFLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 294 (322)
Q Consensus 218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~---~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~ 294 (322)
...+.+||.+|++.+.+..+......+.. ....++.+++.++...|++++|+..++++++++++.+|......++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 34578999999999999999988766554 567789999999999999999999999999999999998887777776
Q ss_pred HHHHH
Q 020735 295 IADCY 299 (322)
Q Consensus 295 Lg~~y 299 (322)
+..+.
T Consensus 87 ~~~l~ 91 (94)
T PF12862_consen 87 LANLL 91 (94)
T ss_pred HHHHh
Confidence 66554
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.74 E-value=0.00023 Score=71.64 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+++++...++.++...+- ....++..|.+....++++.|.++|..++.+.|. ...+++
T Consensus 500 ~fs~~~~hle~sl~~npl----------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWn 557 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL----------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWN 557 (777)
T ss_pred hHHHHHHHHHHHhhcCcc----------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhh
Confidence 345555555666655554 6678999999999999999999999999999999 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
|++.+|.+.++-.+|...+.+|++. +......+.|--.+....|.+++|++.|.+-+.+-
T Consensus 558 Nls~ayi~~~~k~ra~~~l~EAlKc------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRAFRKLKEALKC------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHhhc------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988 44455667777788889999999999999987754
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.00094 Score=58.70 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
-+.+++.-+...+-..-+-..+.+++.+.|+ .+.+.+.+|.-+...|+||.|.+.|...+++.|
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 3444444444444555566678888888877 677788888888888999999998888888777
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------------------
Q 020735 241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHS----------------------------------------------- 273 (322)
Q Consensus 241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~----------------------------------------------- 273 (322)
. ...+..|.|..++--|+|.=|.+.+.
T Consensus 131 ~------y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~ 204 (297)
T COG4785 131 T------YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWN 204 (297)
T ss_pred c------chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHH
Confidence 6 44444444444444444333322221
Q ss_pred ----------------HHHHHHHHcCCCc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 274 ----------------MVLQISEREGEYS----GSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 274 ----------------kaL~l~~~~~d~~----~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
++.+-++ ++. ...++|+.||.-|...|+.++|...|+-++.
T Consensus 205 iV~~yLgkiS~e~l~~~~~a~a~---~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 205 IVEFYLGKISEETLMERLKADAT---DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHhhccHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111111 111 2456788899999999999999999998875
No 151
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.67 E-value=0.0003 Score=60.04 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735 225 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK----------YREAIKYHSMVLQISEREGEYSGSTEAYGA 294 (322)
Q Consensus 225 ~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd----------~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~ 294 (322)
|+.|.+.++......|. .++++++.|.++..+.+ +++|+.-|++||.+ +|...+++++
T Consensus 7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHH
Confidence 46677777777777777 78888888888776633 56788888888888 8999999999
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHHhh
Q 020735 295 IADCYTELGD----LERAARFYDKYISRL 319 (322)
Q Consensus 295 Lg~~y~~~gd----~e~A~~~~~kAl~i~ 319 (322)
+|.+|..++. ..+|.++|++|.+.+
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 9999998764 335555555555443
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.61 E-value=0.00085 Score=70.53 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.-.+++.+|.+|-..|++++|...|++++++.+. .+.+++++|..|... +.++|++++.+|++..-.......
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~ 187 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG 187 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence 4458899999999999999999999999999988 999999999999999 999999999999876543221111
Q ss_pred HH----------------------HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 288 ST----------------------EAYGAIA------------DCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 288 ~a----------------------~a~~~Lg------------~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.- .....++ .+|.+.++|++++++++.++++-++
T Consensus 188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 10 1122234 8899999999999999999987543
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.00041 Score=55.82 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.+.++++.++-..|+.++|+.+|+++++.. -+.+....++..+|.++..+|++++|...+++++.-++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999998751 123345679999999999999999999999999876554
No 154
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00015 Score=64.37 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
-+-.-|+.|+....|+.|+..|.+++.+.|. .+..+.|-+.+|.+..+++.+....++++++ .++.+.
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk 79 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVK 79 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHH
Confidence 3444688899999999999999999999997 6677889999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+++.+|.+......|++|+..+++|.++..
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 999999999999999999999999987764
No 155
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.0008 Score=60.94 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
+.+..-......++..+...|..-+..+|.+.. ...+++|+|.+++.+|+|+.|...|..+.+-+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P- 209 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP- 209 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-------------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-
Confidence 444444455555778888888888888877311 345899999999999999999999999888554
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+....+++++.||.+..++|+.++|-..|+++++.
T Consensus 210 --~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 --KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred --CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45557789999999999999999999999999888
No 156
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.55 E-value=0.0023 Score=64.01 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
.+.....++++.+|..|...|++++|+++.++|++..|. ....|...|.++-..|++.+|.++++.|..+
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---- 257 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEAREL---- 257 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----
Confidence 344456789999999999999999999999999999998 8889999999999999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 283 GEYSGSTEAYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
+...-..-...+..+...|+.++|.+...
T Consensus 258 --D~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 258 --DLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred --ChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55544555566888889999999987654
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0012 Score=62.84 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 157 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 236 (322)
Q Consensus 157 ~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl 236 (322)
..++...+++.+.+..+....+.+.|..+|...|. +....+..+.+.|.+..+.|+..+|+.--+.++
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 34455666677778888888999999999998876 444467789999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 237 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 237 ~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
++.+. ...++...|.++..+++|++|++.|+++++...
T Consensus 315 ~iD~s------yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 315 KIDSS------YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99998 899999999999999999999999999998744
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.53 E-value=0.00016 Score=44.14 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+|+++|.+|..+|++++|+++|++++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 444555555555555555555555554443
No 159
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.49 E-value=0.00028 Score=42.87 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.+++.+|.+|..+|++++|+++|++++++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555443
No 160
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0041 Score=59.39 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...+++..|......++.++|+-.|+.|..++|- .-.+|.+|-.+|...|++.||....+.+++. -+.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~------~~~ 400 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYLAQKRFKEANALANWTIRL------FQN 400 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH------hhc
Confidence 5667777888888888888888888888888876 7778888888888888888888888888777 455
Q ss_pred HHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhhh
Q 020735 288 STEAYGAIA-DCY-TELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg-~~y-~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+.++..+| .++ ..----++|.+++++++.+-+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 566666665 333 222334788888888877643
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0019 Score=61.53 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------------------------CCChHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN------------------------------VKDPIEEKKAARGLGA 257 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~------------------------------~~d~~~~~~a~~~LG~ 257 (322)
...++-.+-.+|...+++.+|...-+.++...+. +.-.+....+...++.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 3445666778899999999998866555554332 1112223345667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 258 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.....|.+++++..+++.+.. .++ ...+..||.++...+.+.+|..+|..|+++-+++
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~------~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII------FPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh------ccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 888889999999999998876 332 3568889999999999999999999999887653
No 162
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.0053 Score=50.49 Aligned_cols=105 Identities=25% Similarity=0.349 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCC-hHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKD-PIE----------EKKAARGLGASLQRQGKYREAIKYHSM 274 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~-----~~d-~~~----------~~~a~~~LG~~~~~~gd~~eAi~~~~k 274 (322)
.....|......++.+.++..+++++.++.. ..+ .+. ...++..++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3344466666778888899999998888742 111 121 234566788889999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 275 aL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
++.+ +|....++..+-.+|...|++.+|...|++..+.+.+
T Consensus 88 ~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 88 ALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999877653
No 163
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.44 E-value=0.01 Score=51.06 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
-.++..+|..|.+.|++++|++.|.++.+.. .........+.++-.+....+++.....+..++-.+.+..+|....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3477889999999999999999999977753 3344456667788888889999999999999999988876664445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
......-|..+...++|.+|.+.|-.++.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 55566678888889999999999877654
No 164
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.43 E-value=0.0028 Score=52.29 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
+.++........+++.+++.++......|.+.. .-.+.+.+|.+|+..+++++|+..+++.+++.|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 344444555555777788888887777765210 2247889999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQGK---------------YREAIKYHSMVLQI 278 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd---------------~~eAi~~~~kaL~l 278 (322)
..+ ...+++..|.+++.+.+ ..+|...|++.++.
T Consensus 80 hp~---vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPN---VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCC---ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 544 56689999999998877 88888888888777
No 165
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.43 E-value=0.0036 Score=55.51 Aligned_cols=97 Identities=22% Similarity=0.277 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---C----CCchHHHHHH
Q 020735 222 NQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE---G----EYSGSTEAYG 293 (322)
Q Consensus 222 ~g~~~~Al~~~~kAl~l~~~~~-d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~---~----d~~~~a~a~~ 293 (322)
..++++|++.|.-|+-.+.-.+ +....+..+..++++|..+|+.+....++++|++..++. . ........++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3567788887777777776554 344578889999999999999888888888887766662 1 1224567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 294 AIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 294 ~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
.+|.++...|++++|..+|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999998753
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.43 E-value=0.00013 Score=45.11 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHH
Q 020735 271 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 310 (322)
Q Consensus 271 ~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~ 310 (322)
+|+++|++ +|..+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37899999 99999999999999999999999863
No 167
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.43 E-value=0.00041 Score=43.26 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 251 AARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
++.+||.+|...|+|++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3566677777777777777777776655443
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.40 E-value=0.0014 Score=60.77 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKA 251 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~~~a 251 (322)
+.+.|...+++......+ .....+..|++....| ++.+|...|++..+..+. .+..
T Consensus 146 R~dlA~k~l~~~~~~~eD----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~ 203 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDED----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKL 203 (290)
T ss_dssp -HHHHHHHHHHHHCCSCC----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHH
T ss_pred CHHHHHHHHHHHHhcCCc----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHH
Confidence 555565555555444333 4555666666766666 589999999985543332 4677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL-ERAARFYDKYIS 317 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~-e~A~~~~~kAl~ 317 (322)
+++++.++..+|+|++|.+.++++++. ++..++++.|+..+...+|+. +.+.++.++..+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 899999999999999999999998765 777889999999999999998 556666665443
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0099 Score=53.46 Aligned_cols=96 Identities=23% Similarity=0.239 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
+.-..|..+-..|++++|+++|+..++-.|. ...++-.--.+...+|+..+||+....-++. -+...+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~E 155 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQE 155 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHH
Confidence 4445688888999999999999998886654 4444444455677889999999999998888 777889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
+|..++.+|...|+|++|.-+|++.+=+
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998743
No 170
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0036 Score=56.02 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIE------EKKAARGLGASLQRQGKYREAIKYHSMVL 276 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~------~d~~~------~~~a~~~LG~~~~~~gd~~eAi~~~~kaL 276 (322)
..++...|+.++..|+|.+|...|..|+...+.+ +++.. ..-.+.|.+.++...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3466778999999999999999999998877653 22211 11247789999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 277 ~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.. .+++..+|+..|.+....=+..+|...+.+++++-
T Consensus 258 ~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 98 89999999999999999999999999999998753
No 171
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.38 E-value=0.00054 Score=41.76 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+.+++++|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999998
No 172
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.35 E-value=0.0047 Score=61.22 Aligned_cols=105 Identities=19% Similarity=0.102 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...-++..|..+...|+.++|++.|++++...... +......++.+|.++..+.+|++|.+++.+..+. ..+.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WS 338 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWS 338 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccH
Confidence 45567778999999999999999999988544332 2234567899999999999999999999998775 3455
Q ss_pred HHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 020735 288 STEAYGAIADCYTELGDL-------ERAARFYDKYISRL 319 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~-------e~A~~~~~kAl~i~ 319 (322)
.+...|..|.|+...|+. ++|.+++.++-...
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 677788889999999999 77777777765543
No 173
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.33 E-value=0.0005 Score=42.86 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
++.+||.+|..+|+|++|+++|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999887654
No 174
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.32 E-value=0.00047 Score=44.98 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 297 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~ 297 (322)
.++..+|..|...|++++|++.|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8888888888875
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.28 E-value=0.038 Score=49.86 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735 160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 239 (322)
Q Consensus 160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~ 239 (322)
..+.+++......++.+.|+..|+......|.+ +- .-.+.+.++.++++.++|+.|+...++.+.+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-----------~~--~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-----------PY--SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------cc--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 366666666666678888888888888766652 11 12377889999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHc-----CCHH---HHHHHHHHHHHHHHHcCCCchHHH--------------HHHHHHH
Q 020735 240 QNVKDPIEEKKAARGLGASLQRQ-----GKYR---EAIKYHSMVLQISEREGEYSGSTE--------------AYGAIAD 297 (322)
Q Consensus 240 ~~~~d~~~~~~a~~~LG~~~~~~-----gd~~---eAi~~~~kaL~l~~~~~d~~~~a~--------------a~~~Lg~ 297 (322)
|...+ ...+++..|.+++.. .|.. +|+..+++.++ +.++.....+ --..+|.
T Consensus 102 P~~~n---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 102 PTHPN---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred CCCCC---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 98555 555777778777643 3444 44555555444 3333332222 2334899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhh
Q 020735 298 CYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 298 ~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.|.+.|.|..|+..++..++-.+
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccc
Confidence 99999999999999999887654
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.0016 Score=54.88 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 237 (322)
Q Consensus 158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~ 237 (322)
.++.+....-..+..++.+.|...|+-...+.+. ...-++.+|.++...++|++|++.|.-+..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~----------------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY----------------NPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666777777777766665544 344578899999999999999999999998
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+.++ .+...+..|.+|...|+.++|+.+|+.+++.
T Consensus 100 l~~~------dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 100 LLKN------DYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred cccC------CCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 8876 6666899999999999999999999999874
No 177
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.02 Score=51.38 Aligned_cols=144 Identities=16% Similarity=0.139 Sum_probs=103.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 163 NEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 163 ~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.++...+.+.+ ...++...|+++...+.. -+.. +.+...+..|--....-++++|+.+|++++.+.+.
T Consensus 74 yEqaamLake~~klsEvvdl~eKAs~lY~E----------~Gsp-dtAAmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYEKASELYVE----------CGSP-DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hCCc-chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 33333333433 345566667777765543 1111 13344455555666778999999999999999887
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
-+........+...+.++.+..++++|-..+.+-..+..+....+....++...-.+|.-..||..|...|+..-+
T Consensus 143 ~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 143 DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 5555555666778899999999999999999988888777777777777777777888888899999999987544
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.24 E-value=0.0033 Score=63.02 Aligned_cols=109 Identities=16% Similarity=0.048 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHH
Q 020735 206 KEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR----EAIKYHSMVLQI 278 (322)
Q Consensus 206 ~~~a~~~~~la~~y~~~g~---~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~----eAi~~~~kaL~l 278 (322)
...++.++..|..|...++ +.+|..+|++|+++.|+ .+.++-.++.+|.....+. ..+....++.+.
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3467788888988887655 88999999999999999 7888888877776543322 122222222222
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.......+..+.+|..+|..+...|++++|..++++|+++.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 222222444568899999999999999999999999998753
No 179
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.24 E-value=0.0035 Score=55.61 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CChH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPI 246 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-------~d~~ 246 (322)
..+.+++.|.-|+-.+.. ...+....+..++.+|..|...++.+....++++|++.+.+. ....
T Consensus 92 t~~~ai~~YkLAll~~~~---------~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQI---------KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 456788888888876654 123444678899999999999999776666666666655431 2233
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.....++.+|...++.|++++|+.+|.+++..
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45678899999999999999999999998865
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=97.23 E-value=0.0047 Score=60.07 Aligned_cols=110 Identities=15% Similarity=-0.033 Sum_probs=85.7
Q ss_pred HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 020735 176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 255 (322)
Q Consensus 176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~L 255 (322)
.++.+.-+++++..+. ++.++..+|.+....++++.|...|++|+.+.|+ .+.+++..
T Consensus 321 ~~a~~~A~rAveld~~----------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~ 378 (458)
T PRK11906 321 QKALELLDYVSDITTV----------------DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYR 378 (458)
T ss_pred HHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHH
Confidence 3444455556665555 7788999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH-HHHHHH-HHHHcCCHHHHHHHHHH
Q 020735 256 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA-YGAIAD-CYTELGDLERAARFYDK 314 (322)
Q Consensus 256 G~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a-~~~Lg~-~y~~~gd~e~A~~~~~k 314 (322)
|.+..-.|+.++|++..++++++ +|....+ ...+-. .|. -.-.++|+..|-+
T Consensus 379 ~~~~~~~G~~~~a~~~i~~alrL------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 379 ALVHFHNEKIEEARICIDKSLQL------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCCHHHHHHHHHHHhcc------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99999999999999999999999 5543332 333333 444 3456777776644
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.18 E-value=0.028 Score=46.53 Aligned_cols=94 Identities=29% Similarity=0.388 Sum_probs=73.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHH
Q 020735 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA 296 (322)
Q Consensus 218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~Lg 296 (322)
++...+++++|...+.+++...+. .......+...+..+...+++++|+..+.+++.. .+. ....+..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKL------NPDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh------CcccchHHHHHhh
Confidence 888999999999999998663321 1124555666677788889999999999999888 444 567788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 297 DCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 297 ~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+...+++++|...+.+++...+
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCc
Confidence 999999999999999998887654
No 182
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.17 E-value=0.007 Score=60.59 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+.+.+++..++++...|. ....++..|.++-+.|++.+|.+.++.|.++... .-....
T Consensus 209 ~~~~Al~~Id~aI~htPt----------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------DRyiNs 266 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPT----------------LVELYMTKARILKHAGDLKEAAEAMDEARELDLA------DRYINS 266 (517)
T ss_pred CHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh------hHHHHH
Confidence 667788888888887766 6778899999999999999999999999998776 556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+-.+.+.|+.++|.+.+..-..--.....+. ...+.....|.+|...|++..|++.|....++++
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 777788899999999988876432210000011 1233345569999999999999999999988775
No 183
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.17 E-value=0.0049 Score=61.67 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.-.+|..+|.++....+|++|+.+|+.|+.+.++ ....++-|+....++++|+...+.-.+-+++ .+.
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~ 141 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL------RPS 141 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhh
Confidence 3446788899999999999999999999999888 8888999999999999999988888888888 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.-..|...+..+...|++..|.+..+...+..
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888999999999999999998887766543
No 184
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.15 E-value=0.0047 Score=57.76 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
.+.+++..++.++.+++++..|.++++..|- ..-.+.+.|..|+++..|..|..-...|+.+.+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----------------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----------------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCC----------------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 3677888999999999999999999998875 334567889999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
. +..+|...|.+-..+|...+|.+.++.+|++
T Consensus 163 ~------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 L------YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred H------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 8 8999999999999999999999999999998
No 185
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.15 E-value=0.0013 Score=39.87 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+.+++.+|.+++..|++++|+++|++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999988
No 186
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.15 E-value=0.0031 Score=63.01 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735 170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK 249 (322)
Q Consensus 170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~ 249 (322)
+...++..-+...+..+.-.+. -..++-..|......|+-++|.++...++..+.. ..
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~e----------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S~ 75 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPE----------------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------SH 75 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCc----------------cchhHHhccchhhcccchHHHHHHHHHHhccCcc------cc
Confidence 3333444455555555554444 3345667788999999999999999998886665 55
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+|.-+|.++....+|++||++|+.|+.+ .+++...+..++....++++++-..+.-.+-++..
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 67888999999999999999999999999 88888899999999999999998887777666544
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.013 Score=58.17 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------------hCCCh-HHHHHHHHHHHHHHHHcCCH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ------------------------NVKDP-IEEKKAARGLGASLQRQGKY 265 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~------------------------~~~d~-~~~~~a~~~LG~~~~~~gd~ 265 (322)
...-.|.++|++++|++|++.|+...+-.. ..... ...-..+||.+-++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 444568999999999999998876633110 00111 11234588999999999999
Q ss_pred HHHHHHHHHHHHHHHHc---CCCc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 266 REAIKYHSMVLQISERE---GEYS------GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 266 ~eAi~~~~kaL~l~~~~---~d~~------~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.+|++.+++++.++.+. +|.. ....+...++.++..+|+-++|...|...++....
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 99999999999888773 1111 24456778999999999999999999998876543
No 188
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.13 E-value=0.0091 Score=51.07 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhCC
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ----------DLEKAFTEFKAALELAQNVK 243 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g----------~~~~Al~~~~kAl~l~~~~~ 243 (322)
-.+.+.+.+.......|. ++..+++-|.++..+. -+++|+.-|++|+.+.|+
T Consensus 6 ~FE~ark~aea~y~~nP~----------------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-- 67 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPL----------------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-- 67 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--
T ss_pred HHHHHHHHHHHHHHhCcH----------------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc--
Confidence 455566666666666655 4445555555554442 356778888999999998
Q ss_pred ChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHH
Q 020735 244 DPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQI 278 (322)
Q Consensus 244 d~~~~~~a~~~LG~~~~~~gd-----------~~eAi~~~~kaL~l 278 (322)
...+++++|++|..++. |++|..+|++|.+.
T Consensus 68 ----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 68 ----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp -----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999987654 44555555555544
No 189
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0047 Score=55.02 Aligned_cols=102 Identities=22% Similarity=0.204 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735 160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 239 (322)
Q Consensus 160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~ 239 (322)
..+.+++...+..-++..++..|.+++...|. -+.-+-+.+.+|++..+++.+..--.+++++.
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~----------------~~~Y~tnralchlk~~~~~~v~~dcrralql~ 74 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPT----------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD 74 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCC----------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence 35666666667667888999999999998887 33455678999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
++ .+.+++.+|........|++||..+.++..+.+...
T Consensus 75 ~N------~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 75 PN------LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred hH------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99 999999999999999999999999999988877654
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.12 E-value=0.001 Score=69.13 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+...|..|...+++.+|+..|+.++...|+ ...++.+||.+|-..|+|..|++.|.++..+ +|....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y 631 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKY 631 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHH
Confidence 4555888899999999999999999999998 8999999999999999999999999999999 888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+-+..+......|+|++|...+.+.+..+.
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998886553
No 191
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.12 E-value=0.0045 Score=64.62 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCc
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS 286 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-~~d~~ 286 (322)
+..++..+|.+|...|+|..|+..|.+|..+.|. ...+.+..+......|+|.+|+..+...+..... ..-..
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~ 668 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQN 668 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7788999999999999999999999999999998 7778899999999999999999999988764332 23345
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+.++++...+..+...|=+.+|..+++++++++
T Consensus 669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 678889999999999999999999999999865
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.12 E-value=0.0011 Score=58.27 Aligned_cols=100 Identities=16% Similarity=0.057 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
..+..++..|..|-..|=.+-|.--|.+++.+.|+ .+.+++.||..+...|+|+.|.+.|..++++ +|
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------Dp 130 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DP 130 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhcc------CC
Confidence 35677888899999999999999999999999999 8999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
....+..|.|....--|+|+-|.+-+.+-.+-
T Consensus 131 ~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 88899999999999999999998877665543
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.09 E-value=0.0015 Score=39.65 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+|+.+|.+|..+|++++|.++|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566677777777777777777777776654
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.06 E-value=0.00039 Score=42.88 Aligned_cols=34 Identities=38% Similarity=0.511 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 020735 231 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 270 (322)
Q Consensus 231 ~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~ 270 (322)
+|++++++.|+ .+.++++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPN------NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhcC
Confidence 37899999999 99999999999999999999963
No 195
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.03 E-value=0.0048 Score=47.24 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=56.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 258 SLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
...+.|||.+|++.+.+............ ....+..++|.++...|++++|...+++|++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999988877655 56778999999999999999999999999998864
No 196
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.97 E-value=0.00051 Score=66.47 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 293 (322)
Q Consensus 214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~ 293 (322)
.-|..++..++|+.|+..|.+|+++.+. .+..+-+.+..+.+.+++..|+.-+.++|++ +|....+|+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~ 76 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYV 76 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhc------Cchhhheee
Confidence 3577888899999999999999999997 6666777888999999999999999999999 899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735 294 AIADCYTELGDLERAARFYDKYISRLESD 322 (322)
Q Consensus 294 ~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d 322 (322)
.-|.+...++++.+|...|++...+.++|
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 99999999999999999999998776654
No 197
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.035 Score=51.20 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
....+.|-+.++.|+|++|+.-|+.+++. .-..+..-|+++.++...++++.|.++..+.++.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqv------sGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQV------SGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34567777777788888888888888877 3334455677888888888888888887776653
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.011 Score=53.55 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
.+....-.+|.+.+..||.+.|..+|++.-+....+.+-........+.+.+|.-.++|.+|...|.+.+.. ++
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~------D~ 283 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM------DP 283 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc------CC
Confidence 344455678888899999999999998877777666666666667888888899999999999999998887 77
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+.+-++.|.|..-.|+..+|++..+.++++.+
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7788888999999999999999999998887654
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.89 E-value=0.018 Score=51.86 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+..++.-|..-+..|++++|.+.|++.....|- .+....+...++.++++.++|++|+...++-+.+.+ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~---s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP---~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF---SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP---THPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCC
Confidence 3557888999999999999999999998865543 444578899999999999999999999999988844 4666
Q ss_pred HHHHHHHHHHHHHHcCC-----H---HHHHHHHHHHHHhhh
Q 020735 288 STEAYGAIADCYTELGD-----L---ERAARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd-----~---e~A~~~~~kAl~i~e 320 (322)
...+++..|.++...=+ . .+|...+++.++.++
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 78899999998765432 2 355666666665554
No 200
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.85 E-value=0.0083 Score=61.11 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHH
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFT--EFKAALELA 239 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~--~~~kAl~l~ 239 (322)
.+..+.........+++.+.|..++...|. ...+.-.+|.++...|+..-|.. ....++++.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~----------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPD----------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC----------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 344445556666788999999999999887 45567778999999999888888 899999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
+. ...+|++||.++..+||.++|.++|..++++.+
T Consensus 751 p~------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 751 PL------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CC------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 98 899999999999999999999999999999843
No 201
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.021 Score=56.74 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-------------- 278 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l-------------- 278 (322)
+..|++.|+++..|+|+..++.. .+. ....+.--+.+++++|+|++|.+.|+..++-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~---~~~------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL---DRL------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc---ccc------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 57899999999999999998821 111 2334555678899999999999999876321
Q ss_pred ----------HHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 279 ----------SEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 279 ----------~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+.....+ +..+.+||.|-++...|+|.+|++.+++|+++-
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 11122222 256789999999999999999999999997654
No 202
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.068 Score=50.08 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 293 (322)
Q Consensus 214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~ 293 (322)
..+......|-|++|.+.-.+++++.+. ...+....+.++...++..++.++..+.-..=+ ........-|.
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyW 251 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYW 251 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhH
Confidence 3455566677777777777777777776 666677777777777777777766655311100 00111223455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 020735 294 AIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 294 ~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
..|.+|.+-+.|+.|.+.|++-
T Consensus 252 H~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHH
Confidence 5677777777777777777654
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.75 E-value=0.0031 Score=41.04 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA 257 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~ 257 (322)
+++.+|..|...|++++|++.|+++++..|+ ...++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~------~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD------DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------CHHHHHHhhh
Confidence 5778999999999999999999999999998 7778877764
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.74 E-value=0.034 Score=52.83 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+..+..||..+++.+.|.+|.++++.+++. .+. +..+..+|.++..+|+.++|.+.+++++....
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~------~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL------RPS-ASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999877 443 45688899999999999999999999996654
No 205
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.69 E-value=0.091 Score=43.38 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~-~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
....+...+..+...+++.+++..+.+++...+.. .......+. ++...|++++|+..+.+++...+. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 164 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALELDPE---LN 164 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cc
Confidence 45567778889999999999999999988866552 223333444 899999999999999999664110 12
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.....+...+..+...+++++|...+.+++...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 45667777788899999999999999999887654
No 206
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.66 E-value=0.016 Score=58.27 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=56.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 020735 220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 299 (322)
Q Consensus 220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y 299 (322)
+...+++.|..+|.++....+ ....++.-....+.++..++|+..++.+++. .|.....|..+|.++
T Consensus 629 ~en~e~eraR~llakar~~sg-------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISG-------TERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIE 695 (913)
T ss_pred hccccHHHHHHHHHHHhccCC-------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHH
Confidence 344555555555555555444 2444555566666677777777777777777 666777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 020735 300 TELGDLERAARFYDKYISR 318 (322)
Q Consensus 300 ~~~gd~e~A~~~~~kAl~i 318 (322)
..+++.+.|.+.|...+..
T Consensus 696 e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 7777777777777766543
No 207
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.026 Score=53.09 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHHHHhCC
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA----------LELAQNVK 243 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kA----------l~l~~~~~ 243 (322)
+++++++.|......... .+....++|.+++-.|.|.+|.....++ ..++-+++
T Consensus 72 dY~~Al~~Y~~~~~~~~~----------------~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 72 DYEEALNVYTFLMNKDDA----------------PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred cHHHHHHHHHHHhccCCC----------------CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 666677766666553222 3456778899999999999997754332 11233333
Q ss_pred ChHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 244 DPIEEK----------KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 244 d~~~~~----------~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
|..... .-...|+.+.+..-.|++||+.|++++.- .+.....-.++|.||.++.-|+-+.+...
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d------n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD------NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 333222 12345667777788899999999998866 66655667789999999999999988888
Q ss_pred HHHHhhh
Q 020735 314 KYISRLE 320 (322)
Q Consensus 314 kAl~i~e 320 (322)
-+++.++
T Consensus 210 vYL~q~p 216 (557)
T KOG3785|consen 210 VYLRQFP 216 (557)
T ss_pred HHHHhCC
Confidence 8877654
No 208
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.52 E-value=0.0065 Score=38.29 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
++.+||.+|..+|++++|..++++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 44555555555555555555555555443
No 209
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.46 E-value=0.03 Score=54.13 Aligned_cols=91 Identities=18% Similarity=0.045 Sum_probs=76.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 020735 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 295 (322)
Q Consensus 216 a~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~L 295 (322)
-..+...++++.|++.+++..+..++ ....++.++...++..+|+..+.++++. .|..+..+...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---------v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---------VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---------HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence 34455678999999999997765543 4456899999999999999999999966 66668888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 296 ADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 296 g~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+..+...++++.|++..++++++.+.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~ 266 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPS 266 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 99999999999999999999988764
No 210
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.44 E-value=0.00091 Score=62.26 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 292 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~ 292 (322)
...+.-.+..|++++|++.|..++++.+. .+..+...+.++.++++...||..+..++++ +++.+..|
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~y 185 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGY 185 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhcc------Cccccccc
Confidence 34566677889999999999999999988 7888889999999999999999999999999 88888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 293 GAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
-..|.....+|+|++|..++..+.++
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhc
Confidence 88999999999999999999988764
No 211
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.43 E-value=0.0053 Score=36.67 Aligned_cols=30 Identities=33% Similarity=0.709 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+++.+|.+|...|++++|...|++.++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 455566666666666666666666555544
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.40 E-value=0.0099 Score=35.90 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
+++.+|.+|...|++++|..+|++++++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555444
No 213
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.40 E-value=0.07 Score=57.99 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
++..|...|.+.|++++|++.|++..+. +-.| ....|..+-..|...|++++|.+.|++..
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSI----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555666666666666666553321 1122 23456666666666666666666666544
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.1 Score=42.80 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCcccc--ccCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEV--IVDP-----KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 246 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~--~~~~-----~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~ 246 (322)
+.+.+++.+.+++..+... .+..... .... ......+...++..+...|++++|+...++++.+.|-
T Consensus 21 ~~~~~~~~~~~al~ly~G~-~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----- 94 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGD-FLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----- 94 (146)
T ss_dssp -HHHHHHHHHHHHTT--SS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred CHHHHHHHHHHHHHHhCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Confidence 5677788888888877541 1111100 0111 1122345566788899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 020735 247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYSG 287 (322)
Q Consensus 247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-~~d~~~ 287 (322)
...++..+-.+|...|++.+|+..|++..+...+ .+..|.
T Consensus 95 -~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 95 -DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred -CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 7888999999999999999999999999776664 455543
No 215
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.35 E-value=0.032 Score=56.29 Aligned_cols=96 Identities=17% Similarity=0.031 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
..++..+..-..+++.++|+.+.+++++.++. ....|..+|.++-++++.+.|.+.|.+.++. -|...
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~------cP~~i 719 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKK------CPNSI 719 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc------CCCCc
Confidence 35666777778889999999999999999998 8889999999999999999999999999888 66667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
-.|..|+.+-...|+.-+|...++++.-
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 7788888888888888888888887753
No 216
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.34 E-value=0.086 Score=57.32 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+..+...|.+.|++++|.+.|++..+.. ... ...+|..|-..|.+.|++++|++.|++..+. +-.| ...
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~~P---dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi~P-d~~ 755 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIK--LRP---TVSTMNALITALCEGNQLPKALEVLSEMKRL----GLCP-NTI 755 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCC-CHH
Confidence 34445555566666666666665543321 000 2345666667777777777777777764322 1122 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.|..+-..+...|++++|.+.+++.++
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555566677777777777777776654
No 217
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.33 E-value=0.0094 Score=55.35 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCCc
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g--d~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
.+...-.-.+|...+++|.|...++.+.+..++ ..-+....+++....| .+.+|...|++..+. .+
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~ 198 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FG 198 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S-
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cC
Confidence 344455678899999999999888876554332 2222233333444444 699999999984322 23
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
..+..++.+|.++..+|+|++|.+.++++++.-
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 456778899999999999999999999987643
No 218
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.29 E-value=0.012 Score=37.08 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
+.++.+||.+|..+|++++|+.++++++++.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4568889999999999999999999998887764
No 219
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0098 Score=55.90 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=57.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 297 (322)
Q Consensus 218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~ 297 (322)
-+....||..|+..++-.+.+.++ .......++|.+++.+|||++|...|+-+.+- +...++...+||.
T Consensus 31 dfls~rDytGAislLefk~~~~~E-----EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAc 99 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDRE-----EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLAC 99 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchh-----hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHH
Confidence 344566777877776655433222 23455667888888888888888888765442 3334566778888
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 020735 298 CYTELGDLERAARFYDKY 315 (322)
Q Consensus 298 ~y~~~gd~e~A~~~~~kA 315 (322)
|+.-+|.|++|.....++
T Consensus 100 c~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 888888888887766554
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.12 Score=46.90 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
+.+-+..++.-.++|.-+++.+++.++.++. ........||.+..+.||.+.|..+|+.+-+...+.++-.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-----~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-----QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 4556778888889999999999999995532 25666789999999999999999999988877777777777778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+..+.+.+|.-.+++.+|...|.+.+..-
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMD 282 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccC
Confidence 89999999999999999999998887643
No 221
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.21 E-value=0.029 Score=54.76 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcC
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREG 283 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~----d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~-l~~~~~ 283 (322)
..+.+-.+..+|..|+|.+|.+.+... .+...-+ ..-.....++|||-++++.|.|.-++.+|.+|++ .+.+..
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 445666788899999999999876542 1222222 1112445578999999999999999999999995 444321
Q ss_pred C-----------CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 284 E-----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 284 d-----------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
. .....+..||.|..|...|++-.|.++|.+++..+.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 1 112456899999999999999999999999998764
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.061 Score=49.46 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCChHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKK 250 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g---~~~~Al~~~~kAl~l~~~~~d~~~~~~ 250 (322)
+...+...|.+++.+.++ +...+..+|.+++... .-.++...+++++.+.+. +..
T Consensus 171 ~~~~A~~AY~~A~rL~g~----------------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~------~ir 228 (287)
T COG4235 171 RASDALLAYRNALRLAGD----------------NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA------NIR 228 (287)
T ss_pred chhHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc------cHH
Confidence 668888899999999877 5556666777766543 356788899999999998 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 251 AARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
+++.||..++..|+|.+|+..++..+....
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999888743
No 223
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.14 Score=50.01 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
..+..++..|...+.++++.+|-....+.++.+...+.-...+-.+.-||.+....|+..++.+-.+-+++++++..|.+
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 34556777888899999999999999999999865555556777788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 020735 287 GSTEAYGAIADCYTELGD--LERAARFYDK 314 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd--~e~A~~~~~k 314 (322)
..-...-.+-.+|...|+ -+.+.+.|.+
T Consensus 523 vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 523 VQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 888888888899999998 5666655544
No 224
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.06 E-value=0.08 Score=41.71 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=70.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHHHHcC
Q 020735 215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----K-------YREAIKYHSMVLQISEREG 283 (322)
Q Consensus 215 la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g----d-------~~eAi~~~~kaL~l~~~~~ 283 (322)
.|..++..||+-+|++..++.+....+-.+.+ ..+..-|.++..+. + ...|+++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence 46788999999999999999998776644332 33444555554332 2 44577777777777
Q ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 284 d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.|..+..++.+|.-+...-.|+++..--++++.+..+
T Consensus 74 -sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 74 -SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred -ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 7777888888888777777788888888888776543
No 225
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.06 E-value=0.059 Score=56.02 Aligned_cols=102 Identities=11% Similarity=0.105 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS--------- 279 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~--------- 279 (322)
..++..+...|...|++++|++.|++..+..-. . ...++..+...+.+.|++++|.+.+...++..
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~--p---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS--I---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 446667777888888888888888776542110 0 12234444444444444444444444333220
Q ss_pred -------------------HHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 280 -------------------EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 280 -------------------~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
++.. . .....|+.+...|...|+.++|.+.|++..+
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~-~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP-R-KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-C-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000 0 1234566666666677777777777666543
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.03 E-value=0.5 Score=41.02 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 252 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~ 252 (322)
++..++...|++++.-.-. .+...++.++...+..+++..|...+++..+..+... .+...
T Consensus 103 Gr~~EA~~hy~qalsG~fA---------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~ 163 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFA---------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGH 163 (251)
T ss_pred hhhhhhHHHHHHHhccccC---------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCch
Confidence 3667777778877753211 1456788999999999999999999999888665432 23345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
..+|.++-.+|++.+|...|+.++.. .|+ .+.++ -+....++|+.++|..-|....+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~------ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY------YPGPQARIY--YAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh------CCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHHHH
Confidence 67889999999999999999999988 444 33444 4778889998888887766655433
No 227
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.077 Score=47.69 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccC---CCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 020735 155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG---SRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE 231 (322)
Q Consensus 155 r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~---~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~ 231 (322)
++.....+.+.+..++...++.++...|+.++.....- .+..+.+ ...-.....-.+++...++...|+|-++++.
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~tpLllNy~QC~L~~~e~yevleh 252 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMITPLLLNYCQCLLKKEEYYEVLEH 252 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence 44455577888889999999999999999999765441 0111100 0111122334678899999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
-.+.+...+. ...+|+..|.+....-+..+|...+.+++++
T Consensus 253 ~seiL~~~~~------nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 253 CSEILRHHPG------NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhcCCc------hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 9999999998 9999999999999999999999999999999
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.90 E-value=0.043 Score=54.43 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735 222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 301 (322)
Q Consensus 222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~ 301 (322)
..+.+.|.+......+.+|+ -+.-++..|..+...|+.++|++.|++++....+- ..-...+++.+|+++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHH
Confidence 45678888899999998887 67778899999999999999999999988532221 22345689999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 020735 302 LGDLERAARFYDKYIS 317 (322)
Q Consensus 302 ~gd~e~A~~~~~kAl~ 317 (322)
+.||++|.+++.+..+
T Consensus 318 ~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLK 333 (468)
T ss_pred HchHHHHHHHHHHHHh
Confidence 9999999999998775
No 229
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.88 E-value=0.33 Score=49.83 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=85.9
Q ss_pred CcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 204 PKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~-~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
+...++.+.+.+|.+++ ...+++.|..++++++.+.++.+-....-.+.+-++.++.+.+... |....++.|+.++..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 34568899999999988 7899999999999999999873333334555667788888888777 999999999998864
Q ss_pred CCCchHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 283 GEYSGSTEAYGAI-ADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 283 ~d~~~~a~a~~~L-g~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+... ...++..+ ...+...+|+..|.+.+++....+.
T Consensus 133 ~~~~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 133 GHSA-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred Cchh-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 4333 22333333 3333334799999999999887764
No 230
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.87 E-value=0.19 Score=52.18 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHhCCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAAL----ELAQNVKDPI----------EEKKAARGLGASLQRQGKYREAIKYHSM 274 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl----~l~~~~~d~~----------~~~~a~~~LG~~~~~~gd~~eAi~~~~k 274 (322)
-..+++.|..+...+|.+.|+++|+++- ++.+-+.+.+ .....|.+.|...-..|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3467788888888999999999998752 2222111111 1223467788888899999999999987
Q ss_pred HHHHHHH---------------cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 275 VLQISER---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 275 aL~l~~~---------------~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
|-..... +.+..+.-.+.|.||.-|...|++.+|..+|.+|-.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6543221 111223345788899999999999999999988754
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.84 E-value=0.14 Score=50.41 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..+-..|+.+.++.|+.+||++.++..++... ..+...++++|-.++.+++.|.++...+.++=+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 45567899999999999999999998776521 123456788999999999999988887777643
No 232
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.73 E-value=0.014 Score=33.23 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
++.++|.++...+++++|..++++++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455566666666666666666666655443
No 233
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.73 E-value=0.21 Score=36.89 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~ 285 (322)
+...+..|.-.+...+.++|+..++++++...+ ....-.++-.|..+|...|+|++++++..+=++++.+.+++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344555677777788888888888888875554 33344456667777888888888888888877777766653
No 234
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.73 E-value=0.089 Score=54.71 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
..++..+...|.+.|+.++|++.|++..+..- .. ...++..+-..+...|+.++|.++|+...+. .+-.| .
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~--~P---d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~---~g~~p-~ 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGV--AP---NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN---HRIKP-R 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCC-C
Confidence 34566677777888888888888877654211 10 2233444555555566666666666554321 11111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
...|..+...|...|++++|.+.+++
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 23344455555555555555554443
No 235
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.72 E-value=0.22 Score=45.05 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q 020735 225 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 304 (322)
Q Consensus 225 ~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd 304 (322)
-...++.+++|++.....+...........+|..|+..|+|++|+++|+.+.....+.+=..-...+...+-.|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34567788899998888777777788888999999999999999999999987777666555677889999999999999
Q ss_pred HHHHHHHHHH
Q 020735 305 LERAARFYDK 314 (322)
Q Consensus 305 ~e~A~~~~~k 314 (322)
.+..+.+--+
T Consensus 234 ~~~~l~~~le 243 (247)
T PF11817_consen 234 VEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHH
Confidence 8887765433
No 236
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.71 E-value=1.2 Score=42.56 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
-...++.-+..-...||++.|-.+..++-+..++ . .-......+.+...+||+..|.....+.++. .|.
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr 185 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---D--TLAVELTRARLLLNRRDYPAARENVDQLLEM------TPR 185 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---c--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcC
Confidence 4556677788888999999999999998887443 1 2334566788899999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
...+......+|...|+|.+...+..+.
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8889999999999999999888776553
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.70 E-value=0.023 Score=33.82 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
++++++|.++...|++++|++.|+++++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36788999999999999999999998876
No 238
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.046 Score=50.46 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE----- 282 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~----- 282 (322)
.+...++.|-+.++.|+|+.|+.-|+.|++..-- .+..-|+++.++++.++|..|+++..+.++..-+.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 5667888999999999999999999999997654 55667899999999999999999998877654331
Q ss_pred -------------CC-----CchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735 283 -------------GE-----YSGSTEAYGAIADCYTELGDLERAARFY 312 (322)
Q Consensus 283 -------------~d-----~~~~a~a~~~Lg~~y~~~gd~e~A~~~~ 312 (322)
++ ......+++..+-++...++++.|.+.+
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 00 0124456777788899999999888754
No 239
>PLN03077 Protein ECB2; Provisional
Probab=95.64 E-value=0.11 Score=55.27 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
+..++..+...|...|+.++|++.|++..+..-. . ...++..+-..+.+.|++++|.++|++..+. .+..|
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~-P----d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P- 623 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-P----DEVTFISLLCACSRSGMVTQGLEYFHSMEEK---YSITP- 623 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CcccHHHHHHHHhhcChHHHHHHHHHHHHHH---hCCCC-
Confidence 3446667777888888888888888886653211 1 1233445555677888888888888875532 22233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
....|..+...+...|++++|.+.+++.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3466788888888888888888887763
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.64 E-value=0.18 Score=43.33 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735 228 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 307 (322)
Q Consensus 228 Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~ 307 (322)
-++.++.-++-+++...+.....++..+|.-|.+.||+++|++.|.++.+.+. ......+.+.++-.+....+||..
T Consensus 15 ~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34445555666666666677788999999999999999999999999877633 133366778889999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 020735 308 AARFYDKYISRLES 321 (322)
Q Consensus 308 A~~~~~kAl~i~e~ 321 (322)
...+..++-.+.+.
T Consensus 92 v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 92 VEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877653
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.60 E-value=0.3 Score=44.89 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=70.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH----cCCCc----hH
Q 020735 220 LRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER----EGEYS----GS 288 (322)
Q Consensus 220 ~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~g-d~~eAi~~~~kaL~l~~~----~~d~~----~~ 288 (322)
..+||++.|..++.++-.+.... ......+..+|+.|......+ ++++|+.++++++++.+. ....+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999998877422 222346778999999999999 999999999999999644 11222 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 020735 289 TEAYGAIADCYTELGDLERAAR 310 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~ 310 (322)
..++..++.+|...+.++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH
Confidence 5678889999999998764443
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.19 Score=46.97 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE 237 (322)
Q Consensus 158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~ 237 (322)
..+...+++...++..++..|++.|.+.+..- .++....+..+.+.|-+.+..|+|..|+.-..+++.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k------------c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK------------CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc------------CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578888889999999999999999999754 234455677888999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735 238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 279 (322)
Q Consensus 238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~ 279 (322)
+.|. ...+++.-+.+++.+.++.+|..+++..+++.
T Consensus 148 ~~P~------h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 148 LKPT------HLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred cCcc------hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9998 89999999999999999999999999887763
No 243
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.35 E-value=1.2 Score=35.86 Aligned_cols=105 Identities=11% Similarity=0.033 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh-----HH
Q 020735 173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP-----IE 247 (322)
Q Consensus 173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~-----~~ 247 (322)
..++++...++++++..+. ...+. .-+..--++.++-.++..+..+|+|++++..-.+++....+.++- ..
T Consensus 23 g~~~eAa~s~r~AM~~srt--iP~eE--aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRT--IPAEE--AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTT--S-TTS-----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhcc--CChHh--hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 3667888899999987754 11111 112223356788889999999999999999999888877653322 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
...+.++.+..+...|+.++|+..|+++-++..+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999887554
No 244
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.35 E-value=0.03 Score=54.72 Aligned_cols=123 Identities=10% Similarity=0.063 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCC----Ch---
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVK----DP--- 245 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~~~----d~--- 245 (322)
+.+.+...|.++...........+......+.-.....++++|.+++..+.|.-+..+|.+|++ ....+. ..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3445555677777654331010111111122223445668899999999999999999999995 332221 11
Q ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735 246 ----IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 302 (322)
Q Consensus 246 ----~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~ 302 (322)
......+||.|..|...|++-.|.++|.++..... .++..|..+|.|....
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh------~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH------RNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 11345799999999999999999999999998843 4567888999887654
No 245
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.29 E-value=0.97 Score=49.55 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
..+..+..+|..-+.+++|.++++..++-..+ ....|..+|..+.++++-++|.+.+.+|++-.++ ....
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv 1600 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHV 1600 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhH
Confidence 35666777777777778888777777776665 5666777777777777777777777777766442 1133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
......|...++.||.+.+...|+.-+.-.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 444455666666666666666666555443
No 246
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=1.7 Score=40.76 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...++.+.|.-|.+.||-+.|++.+.+..+-.-.++-+.....+...+|..|....-.. +..++|-.+.++-+|..-
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChhh
Confidence 45688899999999999999999999999988888888888888889998886544333 444455556666665443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.-..-..-|.-.....++.+|...|-.++..+.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 334444457777788899999999988776553
No 247
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.97 E-value=0.03 Score=54.45 Aligned_cols=109 Identities=15% Similarity=0.208 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
+.++.......-..+.++..|.+++...+. .+...-+.+..+.+.++|..|+.-..+|+++.+.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn----------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN----------------CAIYFANRALAHLKVESFGGALHDALKAIELDPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc----------------ceeeechhhhhheeechhhhHHHHHHhhhhcCch
Confidence 334444445555788899999999998886 3333445678899999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 298 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~ 298 (322)
...+|+.-|.+....+.+.+|...|++...+ .|....+...+..|
T Consensus 71 ------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l------~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 71 ------YIKAYVRRGTAVMALGEFKKALLDLEKVKKL------APNDPDATRKIDEC 115 (476)
T ss_pred ------hhheeeeccHHHHhHHHHHHHHHHHHHhhhc------CcCcHHHHHHHHHH
Confidence 8999999999999999999999999999888 56555555555444
No 248
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.96 E-value=1.4 Score=40.53 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=74.1
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735 211 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 211 ~~~~la~~y~~-~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
.+...|..-+. .++.+.|...|+.+++..+. ....+.....-+...|+.+.|...|++++... ......-
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~ 107 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISSL---PKEKQSK 107 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHH
Confidence 45556777555 67777799999999999887 55666666677788999999999999998651 1111123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
..|......-...|+.+.....++++.+.+++
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 46667777778889999999999999887754
No 249
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=1.5 Score=44.62 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+.+-|.-.++..+|..|++.|...+...+.-......+....+|..+|..+.+.+.|.+++++|-+. ++..+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------d~~~~l 429 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------DRQSPL 429 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------ccccHH
Confidence 45567888899999999999999998877643323334788999999999999999999999999887 666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.-..+-.+....+.-++|+....+...++.
T Consensus 430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 430 CQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 777777777888888999998887776553
No 250
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.38 Score=47.22 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALEL-AQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l-~~~~~----d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
-.+....++|..|.+.++-+. +| ++++. .+... .....+.+++--|...+.++++.||.....+.++++..
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed---~y-~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana 477 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAED---LY-KALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA 477 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHH---HH-HHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch
Confidence 366678899999998776332 22 23332 22211 12235667888899999999999999999999999876
Q ss_pred cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 282 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 282 ~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+.....+-.+..||.+....|+..++.+-..-+++.+.
T Consensus 478 ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 478 EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 666556666788899999999999999988777776654
No 251
>PLN03077 Protein ECB2; Provisional
Probab=94.61 E-value=0.38 Score=51.28 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 258 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.+...++.+.+....++.+++ .|..+..|..++++|...|+|++|.+..+...+
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344445555555444455544 555666788899999999999999988776543
No 252
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.58 E-value=0.081 Score=49.04 Aligned_cols=79 Identities=28% Similarity=0.267 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
.++...++.|.-.+..|+.++|...|+-|+.++|. .++++..+|...-..++..+|-.+|-+|+.+ .|
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti------sP 181 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTI------SP 181 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeee------CC
Confidence 46667778888889999999999999999999999 8999999999999999999999999999999 77
Q ss_pred hHHHHHHHHHH
Q 020735 287 GSTEAYGAIAD 297 (322)
Q Consensus 287 ~~a~a~~~Lg~ 297 (322)
+..+++.|.+.
T Consensus 182 ~nseALvnR~R 192 (472)
T KOG3824|consen 182 GNSEALVNRAR 192 (472)
T ss_pred CchHHHhhhhc
Confidence 77777776544
No 253
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.49 E-value=0.47 Score=35.01 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
....-|.-++.+++.++|+..++++++... +.++...++..+..+|.+.|+|++.+++--+=+++++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667789999999999999987744 3556777888999999999999999999888777765
No 254
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=0.99 Score=44.37 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.++..|.--.++.+.+.|...+-.|+..+|+ ....-+.-..-.++++++.....|++-|+. .|....
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~ 472 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCY 472 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhH
Confidence 3444455555555666666655555555553 222222223334445555555555555555 555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
++...|..-..+||.+.|...|+-|++
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 555555555566666666555555553
No 255
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=3.4 Score=38.25 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=89.8
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 254 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~ 254 (322)
.++.++.+.+.+..... .+-......++.++|..|...++.+.+.+...+.++-+-..+-+...-.+-..
T Consensus 91 neeki~Elde~i~~~ee----------dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR 160 (412)
T COG5187 91 NEEKIEELDERIREKEE----------DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR 160 (412)
T ss_pred hHHHHHHHHHHHHHHhh----------cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 34556666555554433 12244567889999999999999999999999988888777777666667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
||.+|-.+.=.++.++... .+.++-+|..-....-..-|.-.+...++.+|...+-..+..++
T Consensus 161 lg~~y~d~~vV~e~lE~~~---~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 161 LGLIYGDRKVVEESLEVAD---DIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHhhccHHHHHHHHHHHH---HHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 8988866554554444443 45555555433333333446666777788899888877765543
No 256
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.29 E-value=0.92 Score=47.50 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
+...++....+.+...|. ...+..-.|.+..++|+.++|..+++..-..... .-..+.
T Consensus 24 qfkkal~~~~kllkk~Pn----------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~------D~~tLq 81 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN----------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT------DDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC------chHHHH
Confidence 344555556666666665 4445556788899999999998555443332222 445567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 307 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~ 307 (322)
-+-.+|..++++++|..+|++++.. .|. -...+.+=.+|..-++|.+
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~------~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQK------YPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh------CCc-HHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999887 565 4555555566666666653
No 257
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.15 E-value=1.1 Score=40.39 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=67.3
Q ss_pred HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 020735 176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 255 (322)
Q Consensus 176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~L 255 (322)
...++.+.++...... .+...........+|..|+..|++++|+.+|+.+...+++-+=.......+..+
T Consensus 155 ~~iI~lL~~A~~~f~~----------~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l 224 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKK----------YGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL 224 (247)
T ss_pred HHHHHHHHHHHHHHHH----------hccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3445555566655543 122233444667799999999999999999999988888766666678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 020735 256 GASLQRQGKYREAIKYHSMV 275 (322)
Q Consensus 256 G~~~~~~gd~~eAi~~~~ka 275 (322)
-.++...|+.++.+.+.-+.
T Consensus 225 ~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 225 LECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 99999999999887776553
No 258
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.92 E-value=0.08 Score=29.84 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.++.++|.++...+++++|+.++++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778899999999999999999998876
No 259
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=1.9 Score=39.32 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 303 (322)
Q Consensus 224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g 303 (322)
.+..|.-+|++.-+.++. ....+.+++.+...+|+|++|...++.++.- ++..++.+.|+-.+-...|
T Consensus 188 k~qdAfyifeE~s~k~~~------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPP------TPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPETLANLIVLALHLG 255 (299)
T ss_pred hhhhHHHHHHHHhcccCC------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhC
Confidence 466777777766554444 6778899999999999999999999999876 6777888889888888888
Q ss_pred CHHHHHHHHHH
Q 020735 304 DLERAARFYDK 314 (322)
Q Consensus 304 d~e~A~~~~~k 314 (322)
...++..-+-.
T Consensus 256 kd~~~~~r~l~ 266 (299)
T KOG3081|consen 256 KDAEVTERNLS 266 (299)
T ss_pred CChHHHHHHHH
Confidence 87666554433
No 260
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=1 Score=41.08 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=43.7
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 252 ARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 252 ~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+..|+.+|.. .+++.+|.-+|++- +++ .+..+......+.|...+|+|++|....+.++..-.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~---s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEEL---SEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHH---hcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 4445555443 24566677666653 222 334567788899999999999999999999987543
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.85 E-value=0.44 Score=32.43 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 294 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~ 294 (322)
..+|.++..+++.|+|++|..+.+.++++ .|.+..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCCcHHHHHH
Confidence 35788999999999999999999999999 6665555443
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=1.1 Score=41.39 Aligned_cols=100 Identities=23% Similarity=0.221 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHH
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VLQ 277 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~k---------------aL~ 277 (322)
+..+.-....+++.+|...|..++...++ ...+...++.+|...|+.++|...+.. -|+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 33456666778888888888888888887 567777888888888888777666543 133
Q ss_pred HHHH-------------cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 278 ISER-------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 278 l~~~-------------~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
+..+ ...+|+...+-+.+|..|...|+++.|.+.+-..+..
T Consensus 212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3332 2235667788889999999999999999887665543
No 263
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.79 E-value=0.27 Score=52.54 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
++....++.....|+.|+..|++...-.| +...--++.+.+|.+...+-.-..--+.|.+|+...+...+.++.+.-
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE 554 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH
Confidence 34456677778889999999988666444 344455678888888876644444447788888887777778888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
|..-|.+|..+|+|++-++.|..|++.+.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987754
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.78 E-value=0.22 Score=45.91 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAY 292 (322)
Q Consensus 214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~-~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~ 292 (322)
.......+.+..+.|-..|.+|++. +. .....|...+..-+. .++.+.|...|+.+++. .+.....+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~----~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~------f~~~~~~~ 73 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKD----KR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK------FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC----CC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH------HTT-HHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcC----CC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------CCCCHHHH
Confidence 3344455555688888888888632 11 133456666777666 56677799999999987 33344444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 293 GAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
..-..-+...||.++|...|++++..+
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 444566778999999999999998654
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.58 E-value=0.76 Score=46.62 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQ 277 (322)
Q Consensus 208 ~a~~~~~la~~y~~~-----g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g-----d~~eAi~~~~kaL~ 277 (322)
...+...+|.+|+.- .|.++|+.+++.+.+-.... .......+.+.+|.+|.+.. +++.|+.+|.++-+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 345667778877654 68999999999887721110 00003446888898888743 67889998888764
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 020735 278 ISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS 317 (322)
Q Consensus 278 l~~~~~d~~~~a~a~~~Lg~~y~~~g---d~e~A~~~~~kAl~ 317 (322)
. +.+.+.+.+|.+|..-. |+.+|.++|..|..
T Consensus 322 ~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 322 L--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred c--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 4 34567888888887766 56788888888764
No 266
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.40 E-value=0.55 Score=48.32 Aligned_cols=101 Identities=31% Similarity=0.438 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCHHHHHHHHH------HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------
Q 020735 214 KTGKNFLRNQDLEKAFTEFK------AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS-------------- 273 (322)
Q Consensus 214 ~la~~y~~~g~~~~Al~~~~------kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~-------------- 273 (322)
..|.+|-+..++++|+++|+ +++++++- .-+......--..|.-+-..|+++.|+.+|-
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ 744 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG 744 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh
Confidence 35666777788999999765 45665542 1122222223334555555666666665553
Q ss_pred -----HHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 274 -----MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 274 -----kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
++|.+...+.|.......|..++.-|...|+|+.|.+.|.++
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 344444445555555556777899999999999999988765
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.30 E-value=1.2 Score=37.49 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
-...++....+-...++.+.+...+....-+.|+ ....-..-|.++...|+|.+|+..++...+- .+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~ 76 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APG 76 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCC
Confidence 3446667777778888999999999888888888 7777778899999999999999999996544 666
Q ss_pred HHHHHHHHHHHHHHcCCHH
Q 020735 288 STEAYGAIADCYTELGDLE 306 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e 306 (322)
.+.+--.++.|+..+||.+
T Consensus 77 ~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPS 95 (160)
T ss_pred ChHHHHHHHHHHHHcCChH
Confidence 6777778899999999875
No 268
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.27 E-value=0.042 Score=51.45 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+.+++.+..++...+. .+..+-..|.++..++....|+.-+..++++.++ .+.-|-
T Consensus 129 ~~~~ai~~~t~ai~lnp~----------------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~yk 186 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPP----------------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYK 186 (377)
T ss_pred chhhhhcccccccccCCc----------------hhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccc
Confidence 567777777777777766 5666677899999999999999999999999988 666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.-|.....+|++.+|..+++.+.++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888899999999999999998877
No 269
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.21 E-value=0.31 Score=50.83 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=71.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735 221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 300 (322)
Q Consensus 221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~ 300 (322)
..+++.+|+....+.++..|+ ...+...-|.+..++|++++|..+++..-.. .......+-.+-.||.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~------~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEALYGL------KGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhhhccC------CCCchHHHHHHHHHHH
Confidence 457889999999999998887 6667777788999999999999666543222 3334566778999999
Q ss_pred HcCCHHHHHHHHHHHHHhhh
Q 020735 301 ELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 301 ~~gd~e~A~~~~~kAl~i~e 320 (322)
.+|++++|...|++++...+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCC
Confidence 99999999999999987665
No 270
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.20 E-value=0.9 Score=43.95 Aligned_cols=105 Identities=19% Similarity=0.090 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CC-------hH--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---KD-------PI--EEKKAARGLGASLQRQGKYREAIKYHS 273 (322)
Q Consensus 206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~---~d-------~~--~~~~a~~~LG~~~~~~gd~~eAi~~~~ 273 (322)
+....+.+.-|..++++++|..|..-|..++++..+- ++ .. ....+...|..+|...++.+-|+.+-.
T Consensus 173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Confidence 3456677888999999999999999999999998652 11 11 123346689999999999999999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 274 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 274 kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
++|.+ +|....-+..-|.|+..+.+|.+|.+.+--+.
T Consensus 253 rsI~l------nP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 253 RSINL------NPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhhc------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 88888888899999999999999988665443
No 271
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.12 E-value=1.8 Score=44.84 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------H-------------HHHHHcCCCchHHHHH
Q 020735 232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------L-------------QISEREGEYSGSTEAY 292 (322)
Q Consensus 232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka------L-------------~l~~~~~d~~~~a~a~ 292 (322)
+.+++.+...+.|.......|-.++.-|...|+|+-|.+.|.++ | +++.+-..+......|
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 34555555555554443444445566677777777777766542 2 2333333333445556
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 020735 293 GAIADCYTELGDLERAARFY 312 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~ 312 (322)
...+.-..+.|+|.+|...|
T Consensus 828 iakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhHHhHHhhcchhhhhhee
Confidence 66677777888887777665
No 272
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.05 E-value=0.18 Score=31.89 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+|..||.+-...++|++|..-|++++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665543
No 273
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.94 E-value=1 Score=46.99 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHcCCCchHH----------HHHHHHHH
Q 020735 232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV----LQISEREGEYSGST----------EAYGAIAD 297 (322)
Q Consensus 232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka----L~l~~~~~d~~~~a----------~a~~~Lg~ 297 (322)
+.+|+++++ ..|.......||+.+.-+...+|.+.|+++|+++ .++..-..++|... ..|.-.|.
T Consensus 842 w~eA~eiAE-~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 842 WSEAFEIAE-TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred HHHHHHHHh-hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence 334455554 3555666778999999999999999999999985 33333334444333 34555899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 020735 298 CYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 298 ~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.....|+.+.|+.+|.+|-+.+
T Consensus 921 YlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHhcccchHHHHHHHHHhhhhh
Confidence 9999999999999999987654
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.85 E-value=6.7 Score=36.48 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHc-
Q 020735 205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE- 282 (322)
Q Consensus 205 ~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~-l~~~~- 282 (322)
....+..++..+....+.|+++.|...+.++....+...+. .+.....-+...+..|+..+|+..++..++ .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 33467788899999999999999999999887755332221 334455667889999999999999988887 22211
Q ss_pred --------------------------CCCchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhh
Q 020735 283 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE 320 (322)
Q Consensus 283 --------------------------~d~~~~a~a~~~Lg~~y~~~------gd~e~A~~~~~kAl~i~e 320 (322)
......+.++..+|...... ++.+++...|++++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 11233567788888888888 889999999999987654
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.85 E-value=2.3 Score=38.84 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHH
Q 020735 209 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQRQG-------KYREAIKYHSMVL 276 (322)
Q Consensus 209 a~~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~-~~a~~~LG~~~~~~g-------d~~eAi~~~~kaL 276 (322)
..+.+.+|..|.. ..|+.+|..+|+++.+.-.. . ..+.+.+|..|..-. +...|+.+|.++-
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~------~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV------EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 3466778888887 45999999999999885433 2 455778887777642 2336888888875
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735 277 QISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 318 (322)
Q Consensus 277 ~l~~~~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i 318 (322)
.. ....+..++|.+|.. ..|+++|..+|+++-+.
T Consensus 183 ~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 183 EL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred Hh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 54 256788999988865 44899999999998653
No 276
>PRK10941 hypothetical protein; Provisional
Probab=92.69 E-value=0.89 Score=41.74 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
....+.+|=.+|.+.++++.|+.+.+..+.+ .|..+.-+.-.|.+|.++|.+..|...++..++..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3344555555555555555555555555555 44444445555555555555555555555555444
No 277
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=1.6 Score=41.98 Aligned_cols=111 Identities=11% Similarity=-0.045 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
+..++.+..+|-..++...--..+..-+..+.--.|....+...+.|=..|...+.|+.|-..-.++. .++...+...
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ 246 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEW 246 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHH
Confidence 44667777778777876666556665555554334666666667777788888888888888777653 1122223356
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
+...+.+|.+..-++||..|.+++-+|+..+++
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 677888999999999999999999998877653
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.36 E-value=15 Score=37.76 Aligned_cols=135 Identities=10% Similarity=0.046 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+.|...+.+++..... .+-.+....+..-++.++...+... |....++.++..+..+..... .++.
T Consensus 75 n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~-~~fr 142 (608)
T PF10345_consen 75 NLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY-YAFR 142 (608)
T ss_pred CHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH-HHHH
Confidence 456666667777766643 1222234556666788888887777 999999999988874443322 2222
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 254 GL-GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 254 ~L-G~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+ ...+...+|+..|++.++....++...++......+...-+.+....+..+++.+..++++..+.
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~ 210 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQAR 210 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence 23 22222338999999999999999888787777777777788888889989999999988866543
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.22 E-value=1.4 Score=43.57 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------
Q 020735 217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE------------ 284 (322)
Q Consensus 217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d------------ 284 (322)
....+..++++-+++-++|+++.++ .+.+|.-|+.- ...-..+|.++|+++++..+..-.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pd------CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPD------CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhh------hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 4445678999999999999999998 77788766642 233467888888888887766210
Q ss_pred -------CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 285 -------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 285 -------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
-.....+...+|.|..++|+.++|++.++..++.++
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 111245667799999999999999999999886543
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.10 E-value=1.1 Score=45.52 Aligned_cols=92 Identities=29% Similarity=0.401 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHc
Q 020735 211 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE 282 (322)
Q Consensus 211 ~~~~la~~y~~~g-----~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g---d~~eAi~~~~kaL~l~~~~ 282 (322)
+.+.+|.+|.... ++..|+.+|.++-+.- .+.+.+.+|.++.... |+..|.++|..|.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa------ 355 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA------ 355 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHH------
Confidence 5667888888743 7788999998887743 4567888888888755 6789999999986
Q ss_pred CCCchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 020735 283 GEYSGSTEAYGAIADCYTEL----GDLERAARFYDKYISR 318 (322)
Q Consensus 283 ~d~~~~a~a~~~Lg~~y~~~----gd~e~A~~~~~kAl~i 318 (322)
..+...+++++|.+|..= -+.++|..+|.++.+.
T Consensus 356 --~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 356 --KAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred --HcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 345678899999998743 3788999999998764
No 281
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.96 E-value=0.22 Score=49.85 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=79.0
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 213 LKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 213 ~~la~~y-~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
+++|..| ...|+...|..++..|+...|.-.+ ..+.+|+.+...-|-..+|-..+.+++.+ ....+..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~ 678 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLT 678 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchH
Confidence 3444554 4579999999999999988876322 24678899999999999999999999999 4555677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
++.+|..|..+.+.+.|++.++.|++.-
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 8999999999999999999999998754
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.93 E-value=8.5 Score=35.29 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh---C-C----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 207 EELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN---V-K----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 277 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g-~~~~Al~~~~kAl~l~~~---~-~----d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~ 277 (322)
..+..+++.|...+..+ +++.|..+++++.++.+. . . .......++..++.+|...+.++...+ ...+++
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~ 111 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence 45668899999999999 999999999999999533 1 1 113456779999999999988875555 334444
Q ss_pred HHH-HcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 278 ISE-REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 278 l~~-~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
..+ +.++++... +..+-.+.. .++.+++.+.+.+.+.-
T Consensus 112 ~l~~e~~~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 112 LLESEYGNKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHhCCCCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHh
Confidence 443 334444322 233333333 78888888888777654
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.84 E-value=0.43 Score=32.45 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+++|.+|..+..+|+|++|..+.+..+++-+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 4688999999999999999999999998754
No 284
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=1.9 Score=40.69 Aligned_cols=107 Identities=7% Similarity=-0.074 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHH
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA 291 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a 291 (322)
-.+...|+..++|.+|+......+.-.+++.|+......+..=+.+|+...+..+|...+..|-..+...-.+|. .+..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 357889999999999999999999999999999888888887888899999999999988887766655555554 3333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
-..-|..+..-.||..|.-||-+|.+=+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccc
Confidence 3344888888899999999998887633
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.29 E-value=5 Score=35.00 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCHH---HHHHHHHHHHHHHH---------------hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 214 KTGKNFLRNQDLE---KAFTEFKAALELAQ---------------NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275 (322)
Q Consensus 214 ~la~~y~~~g~~~---~Al~~~~kAl~l~~---------------~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka 275 (322)
..|..|+...+.+ +|-..|+++++... ..+...+-..+...++..+...|++++|+..++.+
T Consensus 36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3466666554444 45555666555432 22233444455667888999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 276 L~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
+...+ |....+.+-.+||.+...+|++++|...++.
T Consensus 116 l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 116 LAQTK---DENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred Hccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 87644 3444667788999999999999999987764
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.21 E-value=17 Score=38.58 Aligned_cols=112 Identities=17% Similarity=0.090 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC--HHHHHHHHHH-----------
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK--YREAIKYHSM----------- 274 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd--~~eAi~~~~k----------- 274 (322)
.+.+...+|.+..-.|++++|..+..++.+++...+.......+.+-.+.+...+|+ +.+....+..
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 566778899999999999999999999999998888877777777777777777773 2222222221
Q ss_pred ---------------------------HHHHHHHcCCCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 275 ---------------------------VLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 275 ---------------------------aL~l~~~~~d~~~-~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+++.......+. ...+++.|+.++...||+++|....++.....
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1111111111111 22234589999999999999999888876654
No 287
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.00 E-value=0.55 Score=29.63 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
.++..||.+-...++|++|++-|++++++-++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888888777554
No 288
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.90 E-value=0.32 Score=27.69 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
+.+++|.++...||+++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555443
No 289
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.74 E-value=5.2 Score=43.78 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=95.3
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN--VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~--~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
+....+..+.+++...+..++...|+..+.+++.+..= -.+.+.......+++.++...++++.|+++.+.|+.+.+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 44456778888999999999999999998888776431 1234456667789999999999999999999999998887
Q ss_pred cCC--CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 282 EGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 282 ~~d--~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
... ....+..+..++..+...+++..|....+....++.
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 643 335777899999999999999999999998888764
No 290
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.38 E-value=14 Score=41.17 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
....|...|...+++.+-+.|-..+.+|++..|+ .........-+..-++.||.+.+...|+-.+.- .|.
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPK 1632 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPK 1632 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------Ccc
Confidence 4557778899999988888999999999998886 223444556677888999999999999988777 666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
..+.|....+.-...|+.+.+...|++++.+
T Consensus 1633 RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 6677777777788889999999999988864
No 291
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.35 E-value=0.44 Score=42.53 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=44.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 259 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 259 ~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
....+|.+.|.+.|.+++++ -|..+..|..+|....+.|+++.|...|++.+++-++
T Consensus 5 ~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34567788888888888887 6667777888888888888888888888888776554
No 292
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=6.7 Score=37.20 Aligned_cols=118 Identities=17% Similarity=0.035 Sum_probs=97.0
Q ss_pred HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735 175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 254 (322)
Q Consensus 175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~ 254 (322)
..++...+.+.+..+|. +..+...--..++.+|+.+.....+++.+..- ..|-+..++..-.
T Consensus 119 ~h~a~~~wdklL~d~Pt----------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPT----------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGM 180 (491)
T ss_pred ccHHHHHHHHHHHhCch----------------hhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHH
Confidence 34555667777777776 77777777888899999999999988865521 3455566777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
++..+...|-|++|.+..++++++ ++....+...++.+..-.|+++++.++..+.-
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 888899999999999999999999 88889999999999999999999999987753
No 293
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.22 E-value=1.3 Score=48.12 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CC
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GE 284 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d 284 (322)
+..+..++.+++..+++++|+..-.++.-+.++. .|.......+.+++...+..+....|...+.++..+..=. .+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 3455678999999999999999999988877764 5777788899999999999999999999998887654332 35
Q ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 285 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.|..+....+++.++...++++.|+++.+.|+++.+
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 777788889999999999999999999999988543
No 294
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.21 E-value=13 Score=36.26 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHH--HHHHHHHHHHHHcCCHHHHHHH
Q 020735 154 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEEL--LSRLKTGKNFLRNQDLEKAFTE 231 (322)
Q Consensus 154 ~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a--~~~~~la~~y~~~g~~~~Al~~ 231 (322)
+....+.........-+.+..+..+...|+.++++..++..+.+.......+-... ...-.+..+|...++.+-|+..
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNH 250 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence 33444443333455556666788888899999998877644443211111111112 2334689999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
..+.+-+.|. ...-+..-+.++..+.+|.+|-..+..+.-+.--.+
T Consensus 251 ~hrsI~lnP~------~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 251 SHRSINLNPS------YFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred HhhhhhcCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998887 666677788899999999999999888876654444
No 295
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=8.6 Score=35.70 Aligned_cols=106 Identities=7% Similarity=-0.063 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHH
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA 291 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a 291 (322)
..+...++..|.|.+|+......+.-.++..|+......+..-+.+|....+..++...+..|-..+...-.+|. .+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 356888999999999999999999888899999888877877888999999999998888877766665555553 2333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
-..-|..+..-.||..|-.||-++++=
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 333477888889999999999888763
No 296
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.14 E-value=0.4 Score=27.26 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 020735 251 AARGLGASLQRQGKYREAIKYHS 273 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~ 273 (322)
+.+++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777776654
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.10 E-value=19 Score=34.89 Aligned_cols=97 Identities=26% Similarity=0.233 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
...++--+..-...|+|+.|-.-|+..+. |+.....-+.+|=.--.+.|+++.|+.|-+.+-+. -+..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l 187 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK------APQL 187 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCC
Confidence 34455567888889999999999887655 22224444555556667899999999999999888 5666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..+....=......|||+.|++..+...+
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 66766666677889999999999877654
No 298
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.10 E-value=13 Score=35.71 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~---~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
...++=..|....+|+.-+...+..-.+ |... ...........|.++.+ .|+.++|+..+..++.- +...
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~ 215 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-----DENP 215 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCC
Confidence 4455667788889999888877764443 2111 22244455666777777 89999999999997544 2445
Q ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhh
Q 020735 288 STEAYGAIADCYTEL---------GDLERAARFYDKYISRL 319 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~---------gd~e~A~~~~~kAl~i~ 319 (322)
.++.+..+|.+|..+ ...++|+.+|.++.++-
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 677888889988653 24678888888887654
No 299
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.01 E-value=0.85 Score=41.26 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735 228 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 301 (322)
Q Consensus 228 Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~ 301 (322)
|..+|.+|..+.|. .+..++.||.++...|+.-+|+-+|-+++-. ......+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHH
Confidence 67899999999999 7888999999999999999999999999865 44457788898888887
No 300
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.01 E-value=8.3 Score=35.15 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCCCchHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST 289 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~-eAi~~~~kaL~l~~~~~d~~~~a 289 (322)
.++.-+..+.+.+++.-|.+...-.++.+.+.+.... .....++..+....+.-+ +-.++.+++++.++..+...+.+
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~-~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD-EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 4455677788888999888877666666665443332 223456777777665443 46777788999995455566788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 290 EAYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
..+..+|..|.+.|++.+|..+|-
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999998874
No 301
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=90.00 E-value=4.2 Score=32.77 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---------~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
+..+|....+.+++-.|+-+|++|+.+.++..... -......|||..+...||.+-.++|++-|-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45677888888888888888888888888763111 12335778999999999999999988877553
No 302
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=17 Score=33.87 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..-..+...+++.|.|.+|+......+.-.++.+|.+.....+..=..+|.+..+..++...+..|-.
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 33457788899999999999999999999999999999888888889999999988888776665543
No 303
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.50 E-value=0.56 Score=41.92 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=50.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.....++.+.|.+.|.++++++++ ....+..+|...-+.|+.+.|...|++++++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345678999999999999999998 8888999999999999999999999999998
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.39 E-value=10 Score=32.63 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------
Q 020735 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------------------ 280 (322)
Q Consensus 219 y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~------------------ 280 (322)
.-..+..++|+..|... ++.+-..+...+....+.+....|+..+|+.+|..+-.-..
T Consensus 68 lA~~~k~d~Alaaf~~l----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 68 LAQENKTDDALAAFTDL----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHcCCchHHHHHHHHH----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 33445556665555432 12233344556677888888999999999998886432100
Q ss_pred -------------H--cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 281 -------------R--EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 281 -------------~--~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
. .+.++....+...||..-.+.||+.+|..+|++...
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 0 112333445666799999999999999999987653
No 305
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.35 E-value=11 Score=36.60 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCCCc
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER----EGEYS 286 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~----~~d~~ 286 (322)
++..+|..|..-|+++.|++.|-++.+.+-. .......+.++=.+-.-.|+|..-..+-.+|...... ...-+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 6677999999999999999999997776654 2234556667777777889999888888888766311 11122
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
+.....-|.+...+++|+.|.+++-.+
T Consensus 229 --~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 --AKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 223444566666777999999988654
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.24 E-value=9.5 Score=37.50 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=44.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 256 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 256 G~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
+..++.+|+|.++.-+-.-..++ .| .+.+|..+|.|.....+|++|.+++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34466889999999998888888 66 688999999999999999999998764
No 307
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.84 E-value=16 Score=35.29 Aligned_cols=107 Identities=13% Similarity=0.045 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------- 281 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~------- 281 (322)
......+...+..++|..|...+...... +.+.. +......-.|.-++..-++.+|.+++++.+.....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~ 208 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREG 208 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 35566788889999999999999998774 22222 22333334566778899999999999977653211
Q ss_pred --------------------cCC---Cch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 282 --------------------EGE---YSG--STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 282 --------------------~~d---~~~--~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
... ++. ...-++.-|.--...|+|+.|...+=+++++.
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 209 LKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 000 001 11112223333456888999999999988865
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.83 E-value=9.9 Score=35.33 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHh---------------------------CCChHHHHHHHHHHHHHHHH
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQN---------------------------VKDPIEEKKAARGLGASLQR 261 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~---------------------------~~d~~~~~~a~~~LG~~~~~ 261 (322)
...+..+......|+..+|+..++..+. .... ..+....+.++..+|.....
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3556678889999999999998888777 2211 11234466788888988888
Q ss_pred c------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735 262 Q------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 303 (322)
Q Consensus 262 ~------gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g 303 (322)
. ++.++++..|++++++ .+....+++.+|..+...-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKL------DPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred hccccccccHHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999 7777788888888877653
No 309
>PRK10941 hypothetical protein; Provisional
Probab=88.66 E-value=5.3 Score=36.71 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
-.....++-.+|...++++.|+...+..+.+.|+ .+.-+.-.|.+|.+.|.+..|..-++..++.++
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3445667889999999999999999999999998 777788899999999999999999999988843
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.63 E-value=4.7 Score=33.60 Aligned_cols=84 Identities=24% Similarity=0.167 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
.+......-....+.+++........-+.|+ ....-.--|.++...|+|.+|+..++...+- .+..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchH
Confidence 4444555555688999998888888888888 5666667789999999999999999986544 444466
Q ss_pred HHHHHHHHHHHcCCHH
Q 020735 291 AYGAIADCYTELGDLE 306 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e 306 (322)
+.-.++.|...+||.+
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 6677888999998875
No 311
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.16 E-value=2.2 Score=42.56 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGS 288 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~---gd~~eAi~~~~kaL~l~~~~~d~~~~ 288 (322)
...-|+-.+..+....|+..|.+++...+. ....+.+.+.++.+. |+.-.|+.-...|+++ ++..
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~ 444 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSI 444 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHH
Confidence 333444444555677888888888887776 666677777777654 5666677777888888 8888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..+++.|+.+...++++.+|+.........++
T Consensus 445 ~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 445 QKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 89999999999999999999988766554443
No 312
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.09 E-value=15 Score=33.49 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 020735 209 LLSRLKTGKNFLRNQ-------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQ 277 (322)
Q Consensus 209 a~~~~~la~~y~~~g-------~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~ 277 (322)
..+.+.+|..|..-. +...|...|.++-... ...+.+.+|..|.. ..++.+|+.+|.++-+
T Consensus 148 ~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 148 ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344677777776542 2236777777766644 46678889988765 4589999999999876
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 020735 278 ISEREGEYSGSTEAYGAIADCYTELG---------------DLERAARFYDKYISR 318 (322)
Q Consensus 278 l~~~~~d~~~~a~a~~~Lg~~y~~~g---------------d~e~A~~~~~kAl~i 318 (322)
. .. ..+.++++ ++...| +...|..++.++-..
T Consensus 220 ~------g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 220 Q------GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred C------CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 5 32 67788888 666566 888888888877543
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.07 E-value=7.1 Score=36.05 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
...++..+...+...|+++.+++.+++-+++ +|..-.+|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567888888999999999999999998888 7888888888889999999999999998887654
No 314
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=4.2 Score=40.55 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=64.9
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 020735 240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-SEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYIS 317 (322)
Q Consensus 240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l-~~~~~d~~~~a~a~~~Lg~~y~~~gd-~e~A~~~~~kAl~ 317 (322)
+...|.....--+.-+|.++..+|+...|..+|..+++- .....+.+..+.++|.+|..|..+|. ..+|..++.+|-+
T Consensus 440 ~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 440 PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 344455555556778899999999999999999988743 34456677789999999999999999 9999999999876
Q ss_pred hh
Q 020735 318 RL 319 (322)
Q Consensus 318 i~ 319 (322)
..
T Consensus 520 ~~ 521 (546)
T KOG3783|consen 520 YA 521 (546)
T ss_pred hc
Confidence 55
No 315
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.49 E-value=24 Score=37.47 Aligned_cols=96 Identities=15% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
.+...--.|.+....|++++|+++-+.++...+...... ...++..+|.+..-+|++++|..+..++.+++++.+....
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH
Confidence 334444468888899999999999999999777633322 3557889999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHcCC
Q 020735 288 STEAYGAIADCYTELGD 304 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd 304 (322)
...+.+..+.+...+|+
T Consensus 536 ~~~~~~~~s~il~~qGq 552 (894)
T COG2909 536 ALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 78888888999999994
No 316
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=29 Score=35.69 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
+.++....+...++..+++-|..++.+.+. -..+..-+.....++.+|....+.|+|.+++++|-+..++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----------D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----------DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccc----------hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 334444555555667777778888877654 1112223556778999999999999999999999988876
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
.......+--+...-+.-++|+....+......
T Consensus 427 ------~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 427 ------SPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ------cHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 455555556667777889999988877665433
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.05 E-value=8.2 Score=31.73 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~---~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
...+.+++|.+.....+ ..+.+..+++.++ ...+...-..+|.|+..+++.++|++|+.|.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34467777777776544 4455666666554 1223335566888999999999999999999998877
No 318
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.53 E-value=1.9 Score=40.25 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+.+.-.++.|+.++|...|+-|+++ .|..++++...|......++.-+|-.+|-+|+.+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 34444567789999999999999999 888999999999999999999999999999987653
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.39 E-value=22 Score=31.18 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 020735 217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 296 (322)
Q Consensus 217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg 296 (322)
.-+..+-.-++|...|.++-. .+.+ ..+...+.||..|. ..|.++|+..+.+++++....+ ..+++.+..|+
T Consensus 114 Yy~Wsr~~d~~A~~~fL~~E~-~~~l----~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLa 185 (203)
T PF11207_consen 114 YYHWSRFGDQEALRRFLQLEG-TPEL----ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--NFNPEILKSLA 185 (203)
T ss_pred HHHhhccCcHHHHHHHHHHcC-CCCC----CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHH
Confidence 334445455677666654221 2222 24556777875554 7899999999999999966432 34578899999
Q ss_pred HHHHHcCCHHHHHHH
Q 020735 297 DCYTELGDLERAARF 311 (322)
Q Consensus 297 ~~y~~~gd~e~A~~~ 311 (322)
-+|..+|++++|--+
T Consensus 186 s~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 186 SIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHhcchhhhhhh
Confidence 999999999998543
No 320
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.00 E-value=15 Score=37.77 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-----------------------------HHHHH------
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----------------------------EEKKA------ 251 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-----------------------------~~~~a------ 251 (322)
+-...+..+|..|.+.|.+++|.+.|++++...-...|-. .....
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 3455677899999999999999999988877432211110 00000
Q ss_pred ---HH---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735 252 ---AR---------------------GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 307 (322)
Q Consensus 252 ---~~---------------------~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~ 307 (322)
+. ++-.+-...|++.+-+..|.+|+....-..-.-.....+..+|..|...|+.+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 00 111222233667777888887765432211122345678889999999999999
Q ss_pred HHHHHHHHHH
Q 020735 308 AARFYDKYIS 317 (322)
Q Consensus 308 A~~~~~kAl~ 317 (322)
|...|++|..
T Consensus 406 aRvifeka~~ 415 (835)
T KOG2047|consen 406 ARVIFEKATK 415 (835)
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.78 E-value=4.6 Score=37.46 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+...+..|...|.+.+|+++.++++.+ +|.....+..+-.++...||--.|.+.|++.-+..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 444566788999999999999999999 888888899999999999999999999998876554
No 322
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.58 E-value=10 Score=40.94 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
.+++|+..|++.-...|. +.+..++.+.+|.....+.+-..--+.|.+|+...+.+.+....+.-|.
T Consensus 490 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 490 LYDQALIFYRRIRESFPG-------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred HHHHHHHHHHHHhhcCCC-------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 445566666665554443 2224457777888777543333323567777777777766666677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
+-+.+|+++|+|+|-+++|.-|++...+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999987554
No 323
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=23 Score=33.68 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735 222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 301 (322)
Q Consensus 222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~ 301 (322)
.+..+.-++...+.++.+.+.+-.......-..|...|+..++|.+|+......+.-.++.+|.....+.+..=..+|..
T Consensus 101 ~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~ 180 (411)
T KOG1463|consen 101 DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHA 180 (411)
T ss_pred CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHH
Confidence 34555667777888888877555555555667888999999999999999999999999999999988888888999999
Q ss_pred cCCHHHHHHHHHHHH
Q 020735 302 LGDLERAARFYDKYI 316 (322)
Q Consensus 302 ~gd~e~A~~~~~kAl 316 (322)
+.+..+|...+..|-
T Consensus 181 l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 181 LRNLPKAKASLTSAR 195 (411)
T ss_pred HhcchhHHHHHHHHH
Confidence 999999988776654
No 324
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.48 E-value=12 Score=34.76 Aligned_cols=80 Identities=9% Similarity=0.055 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 303 (322)
Q Consensus 224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g 303 (322)
.-++-++.+.+.++-.+..+...+...++.|+|..|.+.+|-+.+.+++.+.++-+-..+-..+...+...+|.+|..+.
T Consensus 90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence 34555667777777666666677788999999999999999999999999988776666655555556666777665543
No 325
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.27 E-value=4.9 Score=30.37 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHH
Q 020735 229 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 308 (322)
Q Consensus 229 l~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A 308 (322)
+..+++.++..|. ...+.+.++..+...|++++|++.+-..++.....++ ..+--.+=.++..+|.-+--
T Consensus 8 ~~al~~~~a~~P~------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~----~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 8 IAALEAALAANPD------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYED----DAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC----CHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc----cHHHHHHHHHHHHcCCCChH
Confidence 4556677776676 7788889999999999999999998888766433222 23334445555666654433
Q ss_pred HHHHHH
Q 020735 309 ARFYDK 314 (322)
Q Consensus 309 ~~~~~k 314 (322)
..-|++
T Consensus 78 v~~~RR 83 (90)
T PF14561_consen 78 VSEYRR 83 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.04 E-value=9.8 Score=31.30 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 248 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~g---d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
...+.+++++++.... |.++.+..++..++ ...+...-++.|.|+..+..+++|++|+.|.+..++.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3456778888877654 45567777777665 11233456789999999999999999999999888754
No 327
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.47 E-value=9.9 Score=36.59 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHH---H--cCCCchHHHHHHHHH
Q 020735 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL-QISE---R--EGEYSGSTEAYGAIA 296 (322)
Q Consensus 223 g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL-~l~~---~--~~d~~~~a~a~~~Lg 296 (322)
...++|+..|.++.++.+ ..+.-.|++..+...|...+.....++.. .+.. + ..+.....+.+-.++
T Consensus 240 ~~ldkAi~~Y~kgFe~~~-------~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~ 312 (374)
T PF13281_consen 240 ESLDKAIEWYRKGFEIEP-------DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLL 312 (374)
T ss_pred HHHHHHHHHHHHHHcCCc-------cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 348899999999988775 34556677777777777555444343332 2221 1 122333445566788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 297 DCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 297 ~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+....||+++|.++++++++...
T Consensus 313 Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 313 EASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Confidence 889999999999999999987643
No 328
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.76 E-value=27 Score=34.04 Aligned_cols=106 Identities=16% Similarity=0.009 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc---
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE--- 282 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~-------~eAi~~~~kaL~l~~~~--- 282 (322)
-.+|..++..+||+-|...|+.+.+-...-+-....+.++-..|.+....+.. ++...+++.|+......
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~ 291 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALP 291 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence 45899999999999999999998886655444455667777888888877754 36777788877776662
Q ss_pred --CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 283 --GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 283 --~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
........+....+.++...+.+.+|...+-+....
T Consensus 292 ~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 292 RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 122345567778889999999998888877666543
No 329
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=82.76 E-value=5.9 Score=34.40 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=66.7
Q ss_pred HHHHcCCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 218 NFLRNQDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQ-----RQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 218 ~y~~~g~~~~Al~-~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~-----~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
.+..+|+|-+++. -|++|..+.+...|....+.+.+.+|.-+. ..+++..|+++|+.+-+ ...+.+
T Consensus 36 ~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~a 107 (248)
T KOG4014|consen 36 SCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHH
Confidence 3445567777766 478888888888888778888888887665 34678999999998754 334667
Q ss_pred HHHHHHHHHHcC-----C--HHHHHHHHHHHHH
Q 020735 292 YGAIADCYTELG-----D--LERAARFYDKYIS 317 (322)
Q Consensus 292 ~~~Lg~~y~~~g-----d--~e~A~~~~~kAl~ 317 (322)
..++|.+...-. | .++|.+|+.++-+
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd 140 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACD 140 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence 777888776432 3 6788999888754
No 330
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.20 E-value=17 Score=27.44 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=48.4
Q ss_pred HHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 020735 179 IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS 258 (322)
Q Consensus 179 l~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~ 258 (322)
++.+++.+...|. +..+.+.+|..+...|++++|++.+.+.+...+..++..... .+=.+
T Consensus 8 ~~al~~~~a~~P~----------------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~----~ll~~ 67 (90)
T PF14561_consen 8 IAALEAALAANPD----------------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK----RLLDI 67 (90)
T ss_dssp HHHHHHHHHHSTT-----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH----HHHHH
T ss_pred HHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH----HHHHH
Confidence 4456666666666 778899999999999999999999999999887765543322 22234
Q ss_pred HHHcCCHHHHHHHHHH
Q 020735 259 LQRQGKYREAIKYHSM 274 (322)
Q Consensus 259 ~~~~gd~~eAi~~~~k 274 (322)
+...|.-+.-...|++
T Consensus 68 f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 68 FELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHH-TT-HHHHHHHH
T ss_pred HHHcCCCChHHHHHHH
Confidence 4444554444444443
No 331
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=81.49 E-value=15 Score=37.12 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 293 (322)
Q Consensus 223 g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~ 293 (322)
..-+.+++.|++|+..++..-+. ...+-|..+|..+++.++|.+|+.++-++-......+......++|-
T Consensus 293 ~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYK 362 (618)
T PF05053_consen 293 PGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYK 362 (618)
T ss_dssp TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHH
Confidence 34567788999999988764331 23445777888899999999999999988777666554444444443
No 332
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=0.86 Score=43.04 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCh-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDP-----------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~-----------~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.-..|...+..++|+.|..-|.+++...... .+. ........+++.+-...+.+..|+.....+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 3346788999999999999999888765421 011 111234667888899999999999988888773
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.+..+.+++..+..|..+.++++|.+.++.+....++
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 6777889999999999999999999999998765543
No 333
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.00 E-value=3.5 Score=30.51 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=13.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 295 IADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 295 Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.|..+.+.|+.++|+.+|+++++.+
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.82 E-value=3.2 Score=27.03 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 293 GAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 293 ~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
+.||..|...||++.|.+..++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577777777777777777777663
No 335
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.52 E-value=53 Score=31.06 Aligned_cols=106 Identities=14% Similarity=-0.006 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCC
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL-QISEREGEY 285 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL-~l~~~~~d~ 285 (322)
-+.....+|.+|-..+++..|...+...=. -.+...|.......+..+|..|...+|..+|..+-.++= -.+.. .++
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-SNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-cCH
Confidence 445667788888888887777665432111 001112223344456777888888888888877776652 22222 111
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 286 SGSTEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
......-..-|.+....++|-+|...|.+
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222235556666666666655544
No 336
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.48 E-value=11 Score=34.71 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCCCc
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGEYS 286 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~-l~~~~~d~~ 286 (322)
.+.++..++..+...++++.+.+.+++.+.+.|- .-.++..+=..|...|+...|+..|++.-. ..+..+-.|
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 4557778899999999999999999999998887 677788888999999999999999999876 444444444
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.42 E-value=15 Score=33.99 Aligned_cols=131 Identities=8% Similarity=0.053 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..++++..|++.+...+. .+++ ...++-.+-.+++++++|++-.+.|.+.+...+..--..+...+.+
T Consensus 42 ~p~~Al~sF~kVlelEgE---KgeW---------GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN 109 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGE---KGEW---------GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN 109 (440)
T ss_pred CHHHHHHHHHHHHhcccc---cchh---------HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 457788899999987654 1111 2335556678899999999999999988876553100000011111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
.+-..-....+.+--.++|+..+...+...+.......-..||.+|...++|.+-.+..++..
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 111111122233333455555555544433333333344568888888888877666555443
No 338
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.12 E-value=6.9 Score=24.20 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 020735 251 AARGLGASLQRQGKYREAIKYHS 273 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~ 273 (322)
.++++|..++.+|+|++|++.|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46677888888888888888843
No 339
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=80.06 E-value=18 Score=37.20 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a 291 (322)
..+-|+.+-...-+++|...|++.+.+.+-- ........|.---...+.....+.|...|++|++.+ +|..+..
T Consensus 514 i~NyAmfLEeh~yfeesFk~YErgI~LFk~p-~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-----pp~~aKt 587 (835)
T KOG2047|consen 514 IINYAMFLEEHKYFEESFKAYERGISLFKWP-NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-----PPEHAKT 587 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcCCccCCCc-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----CHHHHHH
Confidence 3445666666666778888888877776531 111122223223333444556778888888888763 2333332
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 292 -YGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 292 -~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
|..-|..-.+.|--..|+..|++|-
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334666666666667777776654
No 340
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=79.86 E-value=26 Score=33.15 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735 226 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 302 (322)
Q Consensus 226 ~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~ 302 (322)
++-++.+.+.++-+++.....+..+++.+.+..|.+.||-+.|.+.+++..+-.-..+...+..-+...+|..|...
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH
Confidence 34455666666666665555667889999999999999999999999998877776776777777777778777654
No 341
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=9.9 Score=36.82 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=58.4
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~ 280 (322)
+.+.++...+.+-..|...+.|+.|.....+.. +|+.......+..+|.+|.+..-+++|..|.+++.+|+..++
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 444456666667788888999999988776653 244334445778899999999999999999999999998755
No 342
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.64 E-value=6.8 Score=38.08 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~---~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
.+...+..++.-.|||..|++..+.. ++.+. ..........+|.+|.+|..+++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667888899999999998876431 11111 122333556799999999999999999999999887655544
No 343
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=41 Score=32.94 Aligned_cols=114 Identities=5% Similarity=-0.066 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735 206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285 (322)
Q Consensus 206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~ 285 (322)
....+..+..|.++....++..|-....+..-.+............+..++.++.+-+....+..+.-+++....+...+
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ld 349 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLD 349 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccc
Confidence 34566777889999999999999999999888777777777788888899999998889999999999999888887777
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
...+.+-.+++.....+|-.++|......++...
T Consensus 350 yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~I 383 (482)
T KOG4322|consen 350 YLEANENLDLALEHLALGSPKAALPLLHTAVHLI 383 (482)
T ss_pred hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHH
Confidence 7777788889999999999999999998887643
No 344
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.06 E-value=53 Score=30.56 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------
Q 020735 169 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA-------------- 234 (322)
Q Consensus 169 ~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~k-------------- 234 (322)
.....+...+...++.++...+. ...+...++.+|...|+.+.|...+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~----------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~ 207 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE----------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQ 207 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc----------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHH
Confidence 33334566677778888887776 345677789999999998877664422
Q ss_pred -HHHHHHh---CCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735 235 -ALELAQN---VKDPI----------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 300 (322)
Q Consensus 235 -Al~l~~~---~~d~~----------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~ 300 (322)
-+++... .++.. ....+-+.++..+...|++++|.+.+-..++...... ...+--.+=.++.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~----d~~~Rk~lle~f~ 283 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE----DGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc----CcHHHHHHHHHHH
Confidence 1333222 22211 1345677899999999999999999988766533222 2334455556666
Q ss_pred HcCC
Q 020735 301 ELGD 304 (322)
Q Consensus 301 ~~gd 304 (322)
..|.
T Consensus 284 ~~g~ 287 (304)
T COG3118 284 AFGP 287 (304)
T ss_pred hcCC
Confidence 6663
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.84 E-value=27 Score=32.30 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=62.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735 222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 301 (322)
Q Consensus 222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~ 301 (322)
..++++|+..|++++++-.+-++.- -.++-.+-.+++++++|++-++.|++.+...+..-.......+.+++-..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 3489999999999999886654442 34677788899999999999999999887766532222222233333222223
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 020735 302 LGDLERAARFYDKYISRL 319 (322)
Q Consensus 302 ~gd~e~A~~~~~kAl~i~ 319 (322)
..+.+--.++|+..++.+
T Consensus 118 S~~m~LLQ~FYeTTL~AL 135 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDAL 135 (440)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 344444555565555443
No 346
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.71 E-value=14 Score=36.40 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 274 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~k 274 (322)
+..-.+.-|.-.+..|+|.++.-+-.=..+++|. +.++.-+|.+.+...+|++|..++.+
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3444555677788999999999888777888884 78899999999999999999999977
No 347
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.58 E-value=14 Score=36.88 Aligned_cols=76 Identities=21% Similarity=0.067 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 020735 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQIS 279 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~-~~~d~~~~~~a~~~LG~~~~~~gd-~~eAi~~~~kaL~l~ 279 (322)
+.++.....+-+|.+..++|+...|..+|...++... ...|.+..+.++|.+|..|+.++. ..++.+++.+|-+..
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 4444566677799999999999999999998876533 456788899999999999999999 999999999987663
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.30 E-value=4.2 Score=39.54 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISERE---GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~---~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.++.+|..++...|||..|++.++-. ++.++. .-.+-....+|.+|.+|.-+++|.+|++.|...+-..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999987642 222211 1122244579999999999999999999999987543
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.22 E-value=4.1 Score=35.70 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 269 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi 269 (322)
.+...+.+|..|. ..|.++|+..+.+++++...- ....+..+..|+.+|+.+|+++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4556777777666 669999999999999988763 2346778999999999999999874
No 350
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.82 E-value=8.5 Score=39.06 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~ 290 (322)
...++|++..+-+-...|-.++.+++.+.-. .+...+-+|+.|..+.+.+.|++.+++|++. .+....
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~------~~~~~~ 711 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNISGALEAFRQALKL------TTKCPE 711 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhHHHHHHHHHHHhc------CCCChh
Confidence 4567888888888888899999999988755 6777899999999999999999999999988 555555
Q ss_pred HHHHH
Q 020735 291 AYGAI 295 (322)
Q Consensus 291 a~~~L 295 (322)
+-..|
T Consensus 712 ~~~~l 716 (886)
T KOG4507|consen 712 CENSL 716 (886)
T ss_pred hHHHH
Confidence 44443
No 351
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=77.39 E-value=17 Score=36.52 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 020735 158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---QDLEKAFTEFKA 234 (322)
Q Consensus 158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~---g~~~~Al~~~~k 234 (322)
.++...++............++..|.+++.+++. ....+.+.|.++++. |+.-.|+.--..
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----------------~~~~l~nraa~lmkRkW~~d~~~AlrDch~ 436 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----------------AIYLLENRAAALMKRKWRGDSYLALRDCHV 436 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----------------hhHHHHhHHHHHHhhhccccHHHHHHhHHh
Confidence 4445555555555555667788889999988877 344555556665543 455556666667
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 235 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 235 Al~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
|+++.+. ...+++.|+.++...+++.+|+++...+...
T Consensus 437 Alrln~s------~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 437 ALRLNPS------IQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred hccCChH------HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 7777776 8889999999999999999999988765444
No 352
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.22 E-value=9.1 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhh
Q 020735 290 EAYGAIADCYTELGDLERAARFYD--KYISRL 319 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~--kAl~i~ 319 (322)
+.++.+|..+...|++++|+..|+ -+..+.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999955 554443
No 353
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=77.10 E-value=23 Score=28.68 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI---------EEKKAARGLGASLQRQGKYREAIKYHSMVLQ 277 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~---------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~ 277 (322)
+..+|...+..+++-.|+-.|++|+.+.+++.... ....+..||+..+..+||.+-.++|++-|-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 34578889999999999999999999988873111 1234578999999999999999999976543
No 354
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.90 E-value=7.5 Score=27.51 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+..+...|.-.-..|++++|+.+|.++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334555666666677777777777776654
No 355
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.20 E-value=33 Score=34.70 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=55.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735 235 ALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 312 (322)
Q Consensus 235 Al~l~~~~~d~~~~~~a~~~LG~~~~~--~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~ 312 (322)
.+-+.-+.+.-...+.++.+||.+--. ..+-..+++.|.+||..++..-++ ....-|..+|-.|...++|.+|+.++
T Consensus 263 lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~W 341 (618)
T PF05053_consen 263 LLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSW 341 (618)
T ss_dssp HHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHH
Confidence 333333344444466666666665432 344566899999999998886543 34566888999999999999999999
Q ss_pred HHHHHhhh
Q 020735 313 DKYISRLE 320 (322)
Q Consensus 313 ~kAl~i~e 320 (322)
-+|-+.+.
T Consensus 342 a~aa~Vi~ 349 (618)
T PF05053_consen 342 AEAADVIR 349 (618)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88876553
No 356
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.82 E-value=75 Score=30.25 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=74.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHH-
Q 020735 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAI- 295 (322)
Q Consensus 218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~L- 295 (322)
+..+.++.++|+++.++..+.....+.+..........|.++...||.+++.+.....-......++-+. ...-||.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 3445569999999999999988887777677778889999999999999999999988777666665555 33345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 020735 296 ADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 296 g~~y~~~gd~e~A~~~~~kAl 316 (322)
+..|...|++..+-...-+++
T Consensus 164 sqYyk~~~d~a~yYr~~L~YL 184 (380)
T KOG2908|consen 164 SQYYKKIGDFASYYRHALLYL 184 (380)
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 566677788776544444433
No 357
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.68 E-value=7.8 Score=28.37 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+..+...+.-+-..|++.+|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444556666666777777777777777665
No 358
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.27 E-value=29 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|..+-..|++.+|+.+|++++++.-.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5666777899999999999999999999987654
No 359
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=74.37 E-value=23 Score=30.87 Aligned_cols=103 Identities=21% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHcCCCc----
Q 020735 215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI----SEREGEYS---- 286 (322)
Q Consensus 215 la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l----~~~~~d~~---- 286 (322)
.+....+.|++++|...+++|.+....++.....-...++-|.+-..+..|.+|...|.-.-.- .++.+-++
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yi 114 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYI 114 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHH
Confidence 4556677899999999999998888775544333334555666666777888888877643211 11111111
Q ss_pred -hHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 287 -GSTEAY---GAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 287 -~~a~a~---~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
+.+++- ..........|++++|..+++=.-.
T Consensus 115 lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 115 LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111111 1122334567889999887764433
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.77 E-value=6.7 Score=25.53 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 253 RGLGASLQRQGKYREAIKYHSMVLQ 277 (322)
Q Consensus 253 ~~LG~~~~~~gd~~eAi~~~~kaL~ 277 (322)
++|+..|...||++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999874
No 361
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.01 E-value=48 Score=34.60 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 236 (322)
Q Consensus 206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl 236 (322)
...-.+..++|..+.....+++|.++|.+.-
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344577788888888888888888876543
No 362
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.41 E-value=27 Score=25.52 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 020735 263 GKYREAIKYHSMVLQISER 281 (322)
Q Consensus 263 gd~~eAi~~~~kaL~l~~~ 281 (322)
|+|++|+.+|..+++.+..
T Consensus 20 gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 20 GNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 363
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.34 E-value=1.2e+02 Score=32.29 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------HhCCChHHH------HHH-----------HHHHHHHHHHcCC
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELA------QNVKDPIEE------KKA-----------ARGLGASLQRQGK 264 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~------~~~~d~~~~------~~a-----------~~~LG~~~~~~gd 264 (322)
........|..++..|++++|...|-+++... .+.-|.... -++ ..-|=.+|.+++|
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc
Confidence 44566677999999999999999987766532 111121111 111 1234456777766
Q ss_pred HHHHHHH------------HHHHHHHHHHcCCCch---HHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 265 YREAIKY------------HSMVLQISEREGEYSG---STE----AYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 265 ~~eAi~~------------~~kaL~l~~~~~d~~~---~a~----a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
.++=.++ .+.++++..+.+.... .+. -...+-.++..+++|++|..|++.
T Consensus 447 ~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc
Confidence 5544333 3445555554332111 000 022356678889999999998754
No 364
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.27 E-value=39 Score=28.51 Aligned_cols=64 Identities=13% Similarity=-0.084 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
....+..+..+-...++.+++...+.-.--+ .|..+..-..-|+++...|+|.+|+..++...+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 5556777777888889999999988877667 888888889999999999999999999988643
No 365
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.20 E-value=10 Score=27.82 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.+..+...+.-.-..|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555667777777889999999999888766
No 366
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.87 E-value=1e+02 Score=29.54 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALE 237 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~ 237 (322)
...-+..|.+++..++|.++...+..+-+
T Consensus 58 il~~L~~Gl~a~~~~dya~S~~~ldAae~ 86 (449)
T COG3014 58 LLWDLQNGLSALYARDYATSLGVLDAAEQ 86 (449)
T ss_pred HHHhhhhhHHHHHhhhHHHhhhHHHHHHH
Confidence 33445678888888888888776654444
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=70.52 E-value=24 Score=32.32 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
......++=..+.+.++++.|..+-++.+.+ .|..+.-..--|.+|..+|.+.-|++.++..++..++
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 5556667777788888888888888888877 6666666777788888888888888888777665543
No 368
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.30 E-value=1.7e+02 Score=34.80 Aligned_cols=109 Identities=16% Similarity=0.051 Sum_probs=81.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~ 283 (322)
-+...+..++..|.+....|.++.|-.+.-+|.+.. .+.++...+..++.+||-..|+..+++.++......
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~ 1736 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDL 1736 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccc
Confidence 344567889999999999999999999988887744 456778889999999999999999999997654431
Q ss_pred CC-----c------hHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhh
Q 020735 284 EY-----S------GSTEAYGAIADCYTELGDLE--RAARFYDKYISRLE 320 (322)
Q Consensus 284 d~-----~------~~a~a~~~Lg~~y~~~gd~e--~A~~~~~kAl~i~e 320 (322)
.. | ....+.+.++.-..+.++++ .-.++|+.+.++.+
T Consensus 1737 ~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1737 HTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred cCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 11 1 12235666677777777654 45677888877665
No 369
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=69.62 E-value=6.7 Score=35.90 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=51.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
........|.++..+|+-.++..+|.-....+....+..|+...+|+-|..||.+|+.+..+
T Consensus 50 ~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 50 HSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 34456788888899999999888888888888888888899999999999999998888553
No 370
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=69.47 E-value=14 Score=33.92 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 263 gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
-....|.++..+|+-+++..+|......+-...+..|....+|+.|.-||.+|+..+.+
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 35566788888888888888888887777778888888888888888888888876644
No 371
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=68.99 E-value=6.9 Score=37.12 Aligned_cols=118 Identities=17% Similarity=0.088 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccc---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 020735 168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVI---VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD 244 (322)
Q Consensus 168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~---~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d 244 (322)
......++..+...|.+++.+...-.+...++.. ..-.........+++.+-...+++..|...-..+++..+.
T Consensus 231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s--- 307 (372)
T KOG0546|consen 231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS--- 307 (372)
T ss_pred hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh---
Confidence 3344447778888888888765421111111110 0001112223455778888888888888876666663333
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735 245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 297 (322)
Q Consensus 245 ~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~ 297 (322)
...++|..+..+....++++|++.++.+... .|........+..
T Consensus 308 ---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~------~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 308 ---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQK------APNDKAIEEELEN 351 (372)
T ss_pred ---hCcHHHHHHhHHHhhhchhhhHHHHHHhhcc------CcchHHHHHHHHH
Confidence 7788999999999999999999999998777 5544444433333
No 372
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.71 E-value=97 Score=31.18 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.+.+|..|...++|.+|...|.+|...++
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sylq 453 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSYLQ 453 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999998765
No 373
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=39 Score=32.05 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 258 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
+..+.+|.++|++++++.++-....+++.........+|.++...||.+++.+..+..-+..
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~l 145 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSML 145 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44456699999999999998888877776777788889999999999999999888776544
No 374
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=66.59 E-value=20 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+......|..+-..|++++|+++|.++++..-.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4556667788888899999999999999886543
No 375
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.35 E-value=1.5e+02 Score=29.78 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
....++..+..-++......|...+.+|+.+.|.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 4445555555556666666666666666666655
No 376
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.59 E-value=1.3e+02 Score=28.81 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----C-------CC-----------hHHHHHHHHHHHHHHHHcCC
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----V-------KD-----------PIEEKKAARGLGASLQRQGK 264 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~-----~-------~d-----------~~~~~~a~~~LG~~~~~~gd 264 (322)
-+.+++.++.++..+|+++.|.+..++|+-..+. . .. ....-.+++.......++|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4568889999999999999999999998775542 1 00 00112345666777889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCch-H-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 265 YREAIKYHSMVLQISEREGEYSG-S-TEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 265 ~~eAi~~~~kaL~l~~~~~d~~~-~-a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
+..|.++.+-.+.+ +|. . ..+.+.|=......++|+-=++.++..
T Consensus 119 ~rTAlE~~KlLlsL------dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 119 WRTALEWCKLLLSL------DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHHHhc------CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 99999999999888 332 2 234455555556667777656555543
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.32 E-value=1.2e+02 Score=28.37 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 253 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~ 253 (322)
..+..+..|++|+...+. .......++. .....-+.++....+++++...+. ....-..|.
T Consensus 46 ~~E~klsilerAL~~np~-------------~~~L~l~~l~---~~~~~~~~~~l~~~we~~l~~~~~---~~~LW~~yL 106 (321)
T PF08424_consen 46 LAERKLSILERALKHNPD-------------SERLLLGYLE---EGEKVWDSEKLAKKWEELLFKNPG---SPELWREYL 106 (321)
T ss_pred HHHHHHHHHHHHHHhCCC-------------CHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHHCCC---ChHHHHHHH
Confidence 445677788888887554 1112222333 333455777778888888886554 222222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS------------GSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~------------~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
..-......-.+.+....|.++++......... .....+..+..-..+.|-.+.|...++-.+++
T Consensus 107 ~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 107 DFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 222222334468889999999988776643322 35556777888899999999999999988875
No 378
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.15 E-value=30 Score=25.56 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISERE 282 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~ 282 (322)
+...|..+-..|+.++|+.+|+++++...+.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3344444455578888888888888776653
No 379
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.10 E-value=81 Score=30.77 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHH
Q 020735 230 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 309 (322)
Q Consensus 230 ~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~ 309 (322)
+.++.-++-++....+...-.++..+|.-|...|+.+.|++.|-++-..+.. .......+.|+=.+-...|+|-+-.
T Consensus 131 e~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~ 207 (466)
T KOG0686|consen 131 EKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVL 207 (466)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhh
Confidence 3344445555555555556778999999999999999999999998877663 2235566777888888888988877
Q ss_pred HHHHHHHHh
Q 020735 310 RFYDKYISR 318 (322)
Q Consensus 310 ~~~~kAl~i 318 (322)
.+-.+|.+.
T Consensus 208 sy~~~A~st 216 (466)
T KOG0686|consen 208 SYISKAEST 216 (466)
T ss_pred hHHHHHHhC
Confidence 777777654
No 380
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.05 E-value=1.2e+02 Score=29.09 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=64.2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH----
Q 020735 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQ--RQGKYREAIKYHSMVL---- 276 (322)
Q Consensus 203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~--~~gd~~eAi~~~~kaL---- 276 (322)
+...+.....+.+|..|+...|++.|.-.|.++.+.-++.++..... .--+....-. ...+++..+..-.+++
T Consensus 119 g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~e-i~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y 197 (449)
T COG3014 119 GNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEE-VQKAIKEIDSSKHNINMERSRAEVSEILNNTY 197 (449)
T ss_pred chhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Confidence 34455677888999999999999999999988887655422111100 0000000000 0011222221111111
Q ss_pred ----HHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 277 ----QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 277 ----~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
...+.. .....+.+-|.-|..+.-.|++.++..++.+++-+.+
T Consensus 198 ~ny~~~yea~-~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~q 244 (449)
T COG3014 198 SNYLDKYEAY-QGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQ 244 (449)
T ss_pred HHHHHHHHhh-cccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCc
Confidence 111111 1233566667778888888899999888888776543
No 381
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.76 E-value=15 Score=26.90 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.+..+...|.-.-..|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555666666777777777777777655
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.69 E-value=1.1e+02 Score=28.76 Aligned_cols=60 Identities=25% Similarity=0.267 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 279 (322)
Q Consensus 214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~ 279 (322)
..+..|...|.+.+|+++.++++.+.|- ....+..|-.++...||--+|++.|++--+..
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 4577788999999999999999999886 66677888899999999999999998755443
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.27 E-value=39 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+..+.+++.++...|+.++|....+++..+++
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45566666666667777777666666665544
No 384
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.68 E-value=58 Score=23.79 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|.-.-..|+|++|+.+|.++++..-.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5666777888899999999999999999997643
No 385
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.94 E-value=56 Score=29.29 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch--HHHH
Q 020735 220 LRNQDLEKAFTEFKAALELAQNVKDPI------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEA 291 (322)
Q Consensus 220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~--~a~a 291 (322)
+..|+|+.|++...-|++....+.+.. ..+.-....+......|..-+. .+......+.. .-+-+. .+..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~-~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTT-EWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHh-cCCCChHHHHHH
Confidence 577999999999999999766555432 2344455666667777763332 23344444433 233343 3445
Q ss_pred HHHHHHHH---------HHcCCHHHHHHHHHHHHHhhh
Q 020735 292 YGAIADCY---------TELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 292 ~~~Lg~~y---------~~~gd~e~A~~~~~kAl~i~e 320 (322)
|-.+|..+ ...++...|..++++|+++.+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 66677777 356788999999999998754
No 386
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.60 E-value=1.7e+02 Score=28.88 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALE 237 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~ 237 (322)
.|-.+|.....+|+++-|.++|+++-+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 677788888999999988888877554
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.37 E-value=1.1e+02 Score=29.43 Aligned_cols=76 Identities=16% Similarity=-0.026 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----c------------------CCCchHHHHHHHHHHHHHHc
Q 020735 246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-----E------------------GEYSGSTEAYGAIADCYTEL 302 (322)
Q Consensus 246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-----~------------------~d~~~~a~a~~~Lg~~y~~~ 302 (322)
++...++..++.++..+|++..|-+..++||-..+. . .++...-.+.+.........
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 347788999999999999999999999999866553 1 11223445677778888999
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 020735 303 GDLERAARFYDKYISRLES 321 (322)
Q Consensus 303 gd~e~A~~~~~kAl~i~e~ 321 (322)
|-+..|.++.+--+.+-+.
T Consensus 117 G~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred CcHHHHHHHHHHHHhcCCC
Confidence 9999999999887776543
No 388
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.31 E-value=28 Score=25.45 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|...-..|+|++|+.+|.++++..-.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4556667788888899999999999999886543
No 389
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=59.93 E-value=2.1e+02 Score=29.32 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHcCCCchHHHHHH
Q 020735 215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM-VLQISEREGEYSGSTEAYG 293 (322)
Q Consensus 215 la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~k-aL~l~~~~~d~~~~a~a~~ 293 (322)
+...+...++...+.-....++...+. .+.+..+|+......|....+...+.. +.........-.....-++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPE------NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcc------cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 677777788888888888888887777 778888898888877776666665554 5555221111111111233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 294 AIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 294 ~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
.++.....+|+..++..+.+++.++.+
T Consensus 147 ~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 147 QLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 368888999999999998888887654
No 390
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.70 E-value=1.5e+02 Score=27.57 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH---HHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHc-CCCch
Q 020735 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---ARGLGASLQRQGKYREA-IKYHSMVLQISERE-GEYSG 287 (322)
Q Consensus 213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a---~~~LG~~~~~~gd~~eA-i~~~~kaL~l~~~~-~d~~~ 287 (322)
+.-+.++++.++...|.++.-..++..+. ...+.. .-+++.+....+.-+.. ..+.+.+|+.+.+. ....+
T Consensus 50 ~~ga~~ffk~~Q~~saaDl~~~~le~~ek----a~~ad~~~~~anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G 125 (312)
T KOG3024|consen 50 YDGALCFFKLKQRGSAADLLVLVLEVLEK----AEVADSLLKVANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYG 125 (312)
T ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHH----HHhhHhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCC
Confidence 33455666666666565543333333322 011111 24566666665554444 44557788998886 44667
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
.+..+..+|......+++++|..+|-.+
T Consensus 126 ~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 126 HPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred CHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 8899999999999999999999988543
No 391
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=59.41 E-value=43 Score=34.96 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 285 YSGSTEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
+.....++.++|..+.++.+|++|.+||.+.
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555666666666666666666666543
No 392
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=59.33 E-value=24 Score=25.36 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..+..+...|..+-..|++++|+.+|.++++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445566677777788888888888888766
No 393
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=59.07 E-value=19 Score=21.14 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 020735 290 EAYGAIADCYTEL----GDLERAARFYDKYIS 317 (322)
Q Consensus 290 ~a~~~Lg~~y~~~----gd~e~A~~~~~kAl~ 317 (322)
.+.+.||..|..- .|+++|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3566777777532 378888888888764
No 394
>PF12854 PPR_1: PPR repeat
Probab=58.97 E-value=22 Score=21.31 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 289 TEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 289 a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
...|..|-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45677777788888888888877765
No 395
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.32 E-value=24 Score=21.15 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=15.6
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHH
Q 020735 290 EAYGAIA--DCYTELG-----DLERAARFYDKYIS 317 (322)
Q Consensus 290 ~a~~~Lg--~~y~~~g-----d~e~A~~~~~kAl~ 317 (322)
.+.+.+| .+|..-. |+++|.++|++|-+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 3455566 4333332 46677777777654
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.47 E-value=62 Score=29.00 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 020735 265 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADC-YTELGDLERAARFYDKYISR 318 (322)
Q Consensus 265 ~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~-y~~~gd~e~A~~~~~kAl~i 318 (322)
.++|...|++|+++++.. +.+|..-....|.+.. |..+|+.++|.+..++|++-
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 356777777777777772 2333333333344443 35577887777776666653
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.33 E-value=1.4e+02 Score=29.98 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 020735 265 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISR 318 (322)
Q Consensus 265 ~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd-~e~A~~~~~kAl~i 318 (322)
+.+--..|.+++.. +|..++.|..-|.-..+.+. .+.|...+.++|+.
T Consensus 121 ~~~v~ki~~~~l~~------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAK------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred hhHHHHHHHHHHHh------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 55555555555554 44444444444444333333 55555555555543
No 398
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.88 E-value=86 Score=31.00 Aligned_cols=74 Identities=27% Similarity=0.307 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHH
Q 020735 232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAA 309 (322)
Q Consensus 232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~ 309 (322)
++.|++++..+.++ ..|..||.....+|+++-|.++|+++-....-. ....+....+..++......|++.-|.
T Consensus 334 L~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 334 LDIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence 45556666655533 368899999999999999999999864432210 001122333444555555555544443
No 399
>PF12854 PPR_1: PPR repeat
Probab=56.15 E-value=25 Score=21.03 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSM 274 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~k 274 (322)
..+|.-|-..|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44566677777778888888777764
No 400
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.09 E-value=50 Score=33.02 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735 215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 294 (322)
Q Consensus 215 la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~ 294 (322)
.+.++-..|+|+.|......+-.+... ...+..-+-.....+|++++|....+-.+.- .....+....
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s------~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~------eie~~ei~~i 396 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGT------TDSTLRCRLRSLHGLARWREALSTAEMMLSN------EIEDEEVLTV 396 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcC------CchHHHHHHHhhhchhhHHHHHHHHHHHhcc------ccCChhheee
Confidence 467788889999988877665544333 2233344445667778888887766554321 2223344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 295 IADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 295 Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
-+.....+|-+++|..++++.+.+.+
T Consensus 397 aa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred ecccHHHHhHHHHHHHHHHHHhccCC
Confidence 45566677778888888888776543
No 401
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.96 E-value=40 Score=24.46 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 240 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~ 240 (322)
.+..+...|...-..|+|++|+.+|..+++..-
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344445555666666777777777766666543
No 402
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=54.06 E-value=60 Score=28.36 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 313 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~ 313 (322)
..-+...+.....+|++++|...++++.+..++....-......+.-|.|-..+.+|-+|...|.
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHH
Confidence 33456667777889999999999999988877655322222234445666666777777776653
No 403
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.00 E-value=46 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|..+-..|++++|+.+|.++++....
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555666788888899999999999999886654
No 404
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.38 E-value=97 Score=25.92 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..+..+-..-...++.+++...+...--+ .|..+..-..-|+++...|+|++|+..++...+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVL------RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34444444555588999988888766556 777888888889999999999999999887543
No 405
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.41 E-value=25 Score=19.65 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 292 YGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
|..+=..|.+.|++++|.+.|++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455566667777777777666543
No 406
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.52 E-value=42 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..+...|.-.-..|+|++|+.+|..+++.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566666777777777777777655
No 407
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.58 E-value=35 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..+...|.-.-..|+|++|..+|..+++.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444455555566666666666666544
No 408
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.24 E-value=38 Score=19.15 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 292 YGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
|..+=..|...|++++|.+.|++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455556677777777777776654
No 409
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=49.46 E-value=46 Score=23.94 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+..+..-|.-.-..|+|++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666778888888888887765
No 410
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=49.02 E-value=40 Score=37.67 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~ 262 (322)
.....-.+|..|...|++..|+.+|.+|++..+..+|....+.|+-+++.+....
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 4455667899999999999999999999999999999999999999888776543
No 411
>PF13041 PPR_2: PPR repeat family
Probab=48.56 E-value=41 Score=21.67 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..|..+=..|.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566677777778888888887777654
No 412
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.54 E-value=89 Score=24.16 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 264 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd 264 (322)
.+......|..-+..||+..|.+...++-+..+. ..-.+..-+.+-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~------~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN------PLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCC
Confidence 3445566788889999999999999998665433 33344444555555554
No 413
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.51 E-value=55 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|.-.-..|+|++|+.+|.++++..-.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455666777888889999999999999887643
No 414
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.19 E-value=77 Score=30.41 Aligned_cols=66 Identities=24% Similarity=0.292 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-Ch-HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DP-IEEKKAARGLGASLQRQGKYREAIKYH 272 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~-d~-~~~~~a~~~LG~~~~~~gd~~eAi~~~ 272 (322)
..+..+...|.-++.++++++|...|..|..+..... +. .....+++..|.+++..++...++-..
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566788899999999999999999999999887653 33 335677888888888887776665444
No 415
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=47.79 E-value=83 Score=24.84 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 227 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 227 ~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.|++.|.++..+.+. .+..++.||.-+.....|++++.-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~------~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPD------SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChh------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 456667777776665 5667777776666555666666666666544
No 416
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.77 E-value=58 Score=23.23 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|...-..|++++|+.+|..+++..-.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444556677788889999999999999886654
No 417
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.67 E-value=1.5e+02 Score=29.38 Aligned_cols=109 Identities=11% Similarity=-0.045 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHH---HHHH--HHHHHHHHHcCC----------HHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE---KKAA--RGLGASLQRQGK----------YREAIKYHSMV 275 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~---~~a~--~~LG~~~~~~gd----------~~eAi~~~~ka 275 (322)
.+...|.+......|++|+..+..|-+....++.+... .+++ ..+-++|+.+.+ ..-|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 34557888889999999999888877766654444332 1222 334567776655 33344444433
Q ss_pred HHH----HH--HcCCCch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 276 LQI----SE--REGEYSG---STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 276 L~l----~~--~~~d~~~---~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.-- .. +-++.|. ....+..-|.+.+++|+-++|.++++.+...+
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 210 00 1123333 23345667999999999999999999987654
No 418
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.06 E-value=89 Score=30.61 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
-+.+..++|.+|-..+++++|+.+|+++|.+..+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 3556678888999999999999999999988776
No 419
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=45.64 E-value=3.1e+02 Score=26.97 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=49.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 020735 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 296 (322)
Q Consensus 218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~-~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg 296 (322)
.....|+++.|+++.....+...--.+......+-..-+... ...-|...|.+.-.++.++ .++.+-+-..-+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL------~pdlvPaav~AA 270 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL------APDLVPAAVVAA 270 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCccchHHHHHH
Confidence 344566777777666554443322222222222211111111 1223455666666666666 555555556667
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 020735 297 DCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 297 ~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..+...|+..++-..++.+.+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHhccchhhhhhHHHHHHh
Confidence 777777777777777766654
No 420
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.56 E-value=57 Score=18.55 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 291 AYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.|..+-.++.+.|+++.|...++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667777778888888777776543
No 421
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=44.52 E-value=58 Score=23.60 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
+..+...|.-.-..|+|++|+.+|.++++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334455565666677777777777777665
No 422
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=44.51 E-value=1.6e+02 Score=25.45 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 284 (322)
Q Consensus 209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d 284 (322)
.....+....+...++++.|.......-.+...-.+-.......+.-|...+..|+..++.+..++++++.+..+.
T Consensus 128 ~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~ 203 (220)
T TIGR01716 128 IQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGY 203 (220)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence 3456666777788889999988877765544221233334445566677777889888888999999988876654
No 423
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=44.18 E-value=1.9e+02 Score=32.50 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHHcC
Q 020735 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--------------------KYREAIKYHSMVLQISEREG 283 (322)
Q Consensus 224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g--------------------d~~eAi~~~~kaL~l~~~~~ 283 (322)
.+++|+.+|.++.....+.-......++...++..+.... .-.++.++..+++.+....-
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 3667777777776544443344456667777777777777 78888899999988765433
Q ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 284 d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
+.......|..+|.+|..+|=..++.-+.+.++..
T Consensus 440 ~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 440 SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 44556788999999999999888888777776654
No 424
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.72 E-value=1.4e+02 Score=27.44 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..-++=..|...++++.|....++.+.+.|. .+.-..--|.+|.+.|.+.-|++.++..++.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 4445667788899999999999999999888 6777788899999999999999999998777
No 425
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=43.58 E-value=4.3e+02 Score=29.56 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 020735 254 GLGASLQRQGKYREAIKYHS 273 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~ 273 (322)
..+..|...|+.++|++.|+
T Consensus 957 ~Aal~Ye~~GklekAl~a~~ 976 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYK 976 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHH
Confidence 44455555566666655554
No 426
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.48 E-value=3.2e+02 Score=26.52 Aligned_cols=62 Identities=11% Similarity=-0.044 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH--HHHHHHHcCCHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG--LGASLQRQGKYREAIKYHS 273 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~--LG~~~~~~gd~~eAi~~~~ 273 (322)
.....+...++.++|..|...|.+.+..... .+.......+.. -|..++..-++++|.++++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3444667889999999999999998875322 111112333444 4566678999999999998
No 427
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.20 E-value=3.1e+02 Score=26.33 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--------------
Q 020735 217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-------------- 282 (322)
Q Consensus 217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~-------------- 282 (322)
..-.+..+..+-+..-..|+++.++ .+.+|..|+.-- .--..+|...++++++..+..
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~e------CA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNE------CATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCch------hhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 3444556667777777778887776 555555554322 223455666666666543321
Q ss_pred -----CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 283 -----GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 283 -----~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
.|..-.......|+.|..++|+..+|.+.++.-.
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 1112234455679999999999999999876543
No 428
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=42.57 E-value=3.3e+02 Score=26.47 Aligned_cols=137 Identities=14% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHh-----
Q 020735 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL-------EKAFTEFKAALELAQN----- 241 (322)
Q Consensus 174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~-------~~Al~~~~kAl~l~~~----- 241 (322)
+++.|...|+-....... -......+.++-..|.+.+..+.. ++...+++.|+..+..
T Consensus 223 Dy~~A~s~Y~~~k~Df~~----------Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~ 292 (414)
T PF12739_consen 223 DYELAYSTYRLLKKDFKN----------DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPR 292 (414)
T ss_pred cHHHHHHHHHHHHHHHhh----------chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccc
Confidence 667777777766665432 011112233455566666665533 3556677777766665
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcC--------------------CC--ch------HHHH
Q 020735 242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS--EREG--------------------EY--SG------STEA 291 (322)
Q Consensus 242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~--~~~~--------------------d~--~~------~a~a 291 (322)
.........+....+.++...+.|.+|...+-+..... .... +. +. .+--
T Consensus 293 ~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~ 372 (414)
T PF12739_consen 293 CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFH 372 (414)
T ss_pred cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHH
Confidence 22223445566667777778888877776665554431 1111 01 11 1112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 292 YGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
+..-|.-|...|+...|...|.+|+.+++
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 22337778888999999999999988765
No 429
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.85 E-value=1.9e+02 Score=26.18 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHcCC
Q 020735 238 LAQNVKDPIEEKKAARGLGASLQRQGKYR----------EAIKYHSMVLQISER---EGEYSGSTEAYGAIADCYTELGD 304 (322)
Q Consensus 238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~----------eAi~~~~kaL~l~~~---~~d~~~~a~a~~~Lg~~y~~~gd 304 (322)
+.|...+....+..+-..|..|+-.-.+. +|...|++|+++++. .-++.....+++.--..|.-+++
T Consensus 107 Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~ 186 (244)
T smart00101 107 LIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNS 186 (244)
T ss_pred CccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCC
Q ss_pred HHHHHHHHHHHHH
Q 020735 305 LERAARFYDKYIS 317 (322)
Q Consensus 305 ~e~A~~~~~kAl~ 317 (322)
.++|....++|.+
T Consensus 187 ~~~A~~lAk~afd 199 (244)
T smart00101 187 PDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHH
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.22 E-value=1.4e+02 Score=21.68 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+..+...|..--..|+|++|+++|..+++..-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3445555666677789999999999999998765
No 431
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=39.53 E-value=2.1e+02 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
.+.+++..|......+++.+|+.+++.+....++
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4567888888888999999999999999886554
No 432
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.76 E-value=89 Score=22.67 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+......|...-..|+|++|+.+|..+++....
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455566677777778999999999988886543
No 433
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=37.83 E-value=2.6e+02 Score=23.99 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
...++.|.-..+...++++.|.......-.+.....+-.......+.-|......|+.+++.+-.++++++++
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 4556778888888889999999888886555321111112233344456655678887777777777777664
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.88 E-value=1.9e+02 Score=25.81 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHh-CC--ChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHH
Q 020735 225 LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQ-RQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 225 ~~~Al~~~~kAl~l~~~-~~--d~~~~~~a~~~LG~~~~-~~gd~~eAi~~~~kaL~l~~~ 281 (322)
.++|...|++|++++.. +. ++.....++ |.+..|+ ..|+.++|+...++++.-+-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~L-N~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLAL-NYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH-HHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 36788899999999987 42 334444444 4454444 599999999999998877654
No 435
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.30 E-value=2e+02 Score=22.15 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 304 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd 304 (322)
......-|..-...||+..|.+...++-+. .+.....|..-+.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~------~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKL------SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHcCC
Confidence 334556677888899999999999998554 33334455555666666665
No 436
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=36.07 E-value=73 Score=28.44 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=46.6
Q ss_pred HHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 020735 178 KIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA 257 (322)
Q Consensus 178 al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~ 257 (322)
|...|.+|....|. ....++.+|.++...++.-.|+-+|-+++-.... ...+..||..
T Consensus 1 A~~~Y~~A~~l~P~----------------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P------f~~A~~NL~~ 58 (278)
T PF10373_consen 1 AERYYRKAIRLLPS----------------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP------FPSARENLQK 58 (278)
T ss_dssp HHHHHHHHHHH-TT----------------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--------HHHHHHHHH
T ss_pred CHHHHHHHHHhCCC----------------CCCcccchhhhhccccchHHHHHHHHHHHhcCCC------cHHHHHHHHH
Confidence 45678999999988 4567888999999999999999999998854332 4566777777
Q ss_pred HHHH
Q 020735 258 SLQR 261 (322)
Q Consensus 258 ~~~~ 261 (322)
.+.+
T Consensus 59 lf~~ 62 (278)
T PF10373_consen 59 LFEK 62 (278)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 437
>PF13041 PPR_2: PPR repeat family
Probab=36.06 E-value=92 Score=19.91 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 250 KAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.+|.-+=..|.+.|++++|.+.|++-.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45677778899999999999999986543
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.03 E-value=2.3e+02 Score=22.53 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 020735 223 QDLEKAFTEFKAALELAQNV---KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 299 (322)
Q Consensus 223 g~~~~Al~~~~kAl~l~~~~---~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y 299 (322)
+.-..-...+++++...... .+.......+. .|...-+ ++.+.|.....- +--...+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi----~ya~~~~--~~~~if~~l~~~----~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWI----KYADLSS--DPREIFKFLYSK----GIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHH----HHHTTBS--HHHHHHHHHHHH----TTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHH----HHHHHcc--CHHHHHHHHHHc----CccHHHHHHHHHHHHHH
Confidence 45555566788888776542 23333333333 3333323 677777654322 11334677888999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 020735 300 TELGDLERAARFYDKYI 316 (322)
Q Consensus 300 ~~~gd~e~A~~~~~kAl 316 (322)
...|++++|.+.|+++|
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999999875
No 439
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=34.89 E-value=2.4e+02 Score=23.39 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
.+..+..+|.+|.+.|+..+|.+...+|-+
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 466777888888888888888888777643
No 440
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=33.32 E-value=2e+02 Score=27.58 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
+.+.+++..|......+++.+||..++.|.+..++
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 45677888999898899999999999998876554
No 441
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=33.21 E-value=5.5e+02 Score=26.32 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
.+...+......-...|+++...-.|++++--... ....+..........|+.+-|-..+..+.++.. +
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-----k 363 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL------YDEFWIKYARWMESSGDVSLANNVLARACKIHV-----K 363 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-----C
Confidence 34455555566667789999999999988775554 555666666666667777777777777666632 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYIS 317 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~ 317 (322)
..+.....-+..-...|++..|...+++..+
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 2334444556666777788888887777654
No 442
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.78 E-value=98 Score=32.94 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 230 TEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 230 ~~~~kAl~l~~~~~d~~~-~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
..|.-|+.+++....... ........|.-++.+|++++|+.+|-++|..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 578889999999888888 4456778899999999999999999998876
No 443
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.44 E-value=73 Score=34.00 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
..-.+|...|+|++|.++.+.. +...-.++..-|..|...++|..|.++|-+.++-++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 4556778888888777766542 111234566677777788888888888777655443
No 444
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.02 E-value=1.5e+02 Score=20.57 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 020735 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 271 (322)
Q Consensus 214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~ 271 (322)
..|..++..|+|=+|-+.++..-...+.-........+....|....+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4567788889999988888876543222111222333444455566678888887764
No 445
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=31.95 E-value=4.4e+02 Score=28.06 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCCH-HHHHH-HHHHHHHHHHHcCCCchH
Q 020735 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGKY-REAIK-YHSMVLQISEREGEYSGS 288 (322)
Q Consensus 212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~-~~~d~~~~~~a~~~LG~~~~~~gd~-~eAi~-~~~kaL~l~~~~~d~~~~ 288 (322)
++..|.+--..+--+-|-++|.+|..+++ ++.|+.....+...+..++.+...+ ++--+ .-.++-..+.+.-..++.
T Consensus 595 ~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQ 674 (762)
T PF03635_consen 595 YLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQ 674 (762)
T ss_dssp HHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHH
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHH
Confidence 33444444444444457778999999998 5778877777777776666555443 22222 223444444445557778
Q ss_pred HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhhh
Q 020735 289 TEAYGAIADCYTELG----------DLERAARFYDKYISRLE 320 (322)
Q Consensus 289 a~a~~~Lg~~y~~~g----------d~e~A~~~~~kAl~i~e 320 (322)
..+.+.-+..++... |-++..++++||+++++
T Consensus 675 CRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAd 716 (762)
T PF03635_consen 675 CRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIAD 716 (762)
T ss_dssp HHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHH
Confidence 888888788777654 67899999999999886
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.90 E-value=3.9e+02 Score=24.17 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H------HHHHHcCCCchHHHHHHHHH
Q 020735 228 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV-----L------QISEREGEYSGSTEAYGAIA 296 (322)
Q Consensus 228 Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka-----L------~l~~~~~d~~~~a~a~~~Lg 296 (322)
-..+.+++++-.+.-+.+...+..+..+|..+++.+++.+|..+|-.+ . ......+++..........-
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV 148 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAV 148 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 344566677766444445556777888899999999999998888421 1 11111222222222233334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 020735 297 DCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 297 ~~y~~~gd~e~A~~~~~kAl~i 318 (322)
.-|...++...|...++...+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5567789999999888777665
No 447
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.68 E-value=1.8e+02 Score=28.02 Aligned_cols=63 Identities=14% Similarity=0.009 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHcCCHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG--EYSGSTEAYGAIADCYTELGDLERAAR 310 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~--d~~~~a~a~~~Lg~~y~~~gd~e~A~~ 310 (322)
...-+...|.-.+.++++++|...|..|..++.+.- .......+++.-|.++...++.+.+.-
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344577889999999999999999999999887753 233467788888999888888776543
No 448
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.44 E-value=2.6e+02 Score=30.95 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
.+..|..+|.+..+.|...+|++.|-+| |+| ..|...-.+....|.|++=.+|+.-|-+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3456788999999999999999999775 233 45677777888899999988888776543
No 449
>PRK11677 hypothetical protein; Provisional
Probab=30.28 E-value=3e+02 Score=22.43 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 020735 159 LQRVNEQLRQINA 171 (322)
Q Consensus 159 ~~~l~~~l~~~~~ 171 (322)
...+..++.+...
T Consensus 31 q~~le~eLe~~k~ 43 (134)
T PRK11677 31 QQALQYELEKNKA 43 (134)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 450
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=28.62 E-value=2.2e+02 Score=23.40 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH
Q 020735 251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 306 (322)
Q Consensus 251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e 306 (322)
.....+...+..|+|.-|.+..+.++.. +|....+....+.+|..+|.-.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~a------dp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFA------DPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHHHhc
Confidence 3455666688899999999999999887 7777788888888888877554
No 451
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.51 E-value=2.7e+02 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 241 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~ 241 (322)
.+.+..+.|.+|-..+++++|+.+|++++.+..+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 4556677899999999999999999999998765
No 452
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.33 E-value=3.7e+02 Score=25.56 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 211 SRLKTGKNFLRNQDLEKAFTEFKAALE 237 (322)
Q Consensus 211 ~~~~la~~y~~~g~~~~Al~~~~kAl~ 237 (322)
.+...|.---..++|++|+.+|+.+++
T Consensus 12 ~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 12 DLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 453
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.25 E-value=3.8e+02 Score=25.42 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 020735 226 EKAFTEFKAALEL 238 (322)
Q Consensus 226 ~~Al~~~~kAl~l 238 (322)
..|++||.-+++.
T Consensus 34 ~~aleYF~~~lKY 46 (439)
T KOG0739|consen 34 QNALEYFLHALKY 46 (439)
T ss_pred HHHHHHHHHHHHh
Confidence 4455555555554
No 454
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=27.18 E-value=2.9e+02 Score=25.89 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhCCC------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 227 KAFTEFKAALELAQNVKD------------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 227 ~Al~~~~kAl~l~~~~~d------------------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
++..+|++|.+....... ..+.+.+++.+|..+...+++.+|+.+++.|....+.
T Consensus 211 ~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 211 EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 445567777666554321 1235567888888888889999999999998876554
No 455
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=26.92 E-value=2.9e+02 Score=26.99 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
.+.+++.+|......+++.+||.+++.+....+.
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~ 328 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELED 328 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999886444
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.68 E-value=5.8e+02 Score=24.53 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 244 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276 (322)
Q Consensus 244 d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL 276 (322)
|.......-..|+.+..++|+..+|++.++...
T Consensus 270 Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 270 DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 344455667789999999999999999998643
No 457
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.61 E-value=6.7e+02 Score=30.33 Aligned_cols=69 Identities=12% Similarity=-0.106 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735 244 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320 (322)
Q Consensus 244 d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e 320 (322)
-....+..|...+.+.+..|.++.|-.+.-.|.+. . .+.++...|......||-..|+...++.++...
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~------r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKES------R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc------c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 34557888999999999999999999999888765 3 567889999999999999999999999987653
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=24.77 E-value=7.4e+02 Score=25.10 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=47.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 020735 220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 298 (322)
Q Consensus 220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd-~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~ 298 (322)
.+.+.+.+--..|.+++...|. .+..|...+.-.+..+. .+.|...+.++|+..+ +.|..-..|+.+-..
T Consensus 116 kk~~~~~~v~ki~~~~l~~Hp~------~~dLWI~aA~wefe~n~ni~saRalflrgLR~np---dsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 116 KKKKTYGEVKKIFAAMLAKHPN------NPDLWIYAAKWEFEINLNIESARALFLRGLRFNP---DSPKLWKEYFRMELM 186 (568)
T ss_pred HHhcchhHHHHHHHHHHHhCCC------CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC---CChHHHHHHHHHHHH
Confidence 3445588888899999999998 55555555555666555 8889999999998832 344444455554443
Q ss_pred H
Q 020735 299 Y 299 (322)
Q Consensus 299 y 299 (322)
|
T Consensus 187 ~ 187 (568)
T KOG2396|consen 187 Y 187 (568)
T ss_pred H
Confidence 3
No 459
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=24.60 E-value=7.8e+02 Score=25.28 Aligned_cols=98 Identities=8% Similarity=-0.082 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~ 287 (322)
++.+++.+-.-+..+ .+++..+.|++.+...|. .+.++..-...-...++|+.-...|.++|.-. ..
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~------s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv------Ln 85 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS------SPRAWKLYIERELASKDFESVEKLFSRCLVKV------LN 85 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------hh
Confidence 455666555544444 899999999998888877 56666655666777889999999998887542 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
.......|..+....|+...+.+..-+|.+.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f 116 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDF 116 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 2333455677777777777766666555543
No 460
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=24.33 E-value=6.5e+02 Score=25.78 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCCc
Q 020735 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEYS 286 (322)
Q Consensus 208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd-~~eAi~~~~kaL~l~~~~~d~~ 286 (322)
+....+..+..+++.|+|.-|+.....+.....-.-+.... .+ ..-+.+.....+..++..++.|
T Consensus 416 d~a~~l~~a~~~~~~G~y~~a~~~~~~~~~~~~~~~~~~~~--------------~dk~~~~re~a~i~i~~A~~~g~~p 481 (579)
T COG1750 416 DLATLLVTAERYYEDGNYSAALASARAAIAIGEFLLESFYE--------------DDKESITREAAFIKIGLAENSGDQP 481 (579)
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhhheeecccc--------------hhHHHHHHHHHHHHhhhhhhcCccc
Confidence 34455666777777888888777776666554431111110 11 1112333333455667777888
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735 287 GSTEAYGAIADCYTELGDLERAARFYDKYISR 318 (322)
Q Consensus 287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i 318 (322)
..+.+|+..+.. .+..+...|..+|+.+...
T Consensus 482 ~l~~Ay~eyae~-~~~~~~~~a~ayY~~as~~ 512 (579)
T COG1750 482 VLALAYYEYAEN-GQLQDTINAAAYYKDASEL 512 (579)
T ss_pred chHHHHHHHHhc-ccchhHHHHHHHHHHHHHH
Confidence 888999888887 5677888888888877653
No 461
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=23.89 E-value=4.4e+02 Score=24.94 Aligned_cols=115 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC------
Q 020735 207 EELLSRLKTGKNFLRNQD----------------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------ 264 (322)
Q Consensus 207 ~~a~~~~~la~~y~~~g~----------------~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd------ 264 (322)
+.+.+++++|..|...+. +..|...|+-..+..............+..+......+.+
T Consensus 105 E~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~k 184 (377)
T PF03097_consen 105 EKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECFYEK 184 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------HHHHHHHHHHHHHHHHHcCCCch----------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735 265 --------------YREAIKYHSMVLQISEREGEYSG----------------STEAYGAIADCYTELGDLERAARFYDK 314 (322)
Q Consensus 265 --------------~~eAi~~~~kaL~l~~~~~d~~~----------------~a~a~~~Lg~~y~~~gd~e~A~~~~~k 314 (322)
..++.+.|+.+.+.......... .+.+++..|......+++-+|+.+++.
T Consensus 185 a~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~ 264 (377)
T PF03097_consen 185 AIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRR 264 (377)
T ss_dssp HHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Q ss_pred HHHhhhc
Q 020735 315 YISRLES 321 (322)
Q Consensus 315 Al~i~e~ 321 (322)
|.+.++.
T Consensus 265 A~~~l~~ 271 (377)
T PF03097_consen 265 AEEALKE 271 (377)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 462
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.87 E-value=3.5e+02 Score=29.38 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
-|..+-..|...+|+.+|.+++...+...-.......++.++.+|...+ .++|-..+.+.+
T Consensus 322 al~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l~~-~D~a~~~f~~~i 382 (960)
T KOG1938|consen 322 ALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLLCQ-EDDADEEFSKLI 382 (960)
T ss_pred hhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhhhc-chhHHHHHHHHH
Confidence 4566777888999999999999987754433334456777777665554 356666666554
No 463
>PRK11619 lytic murein transglycosylase; Provisional
Probab=23.72 E-value=6.3e+02 Score=26.33 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=34.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735 261 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316 (322)
Q Consensus 261 ~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl 316 (322)
..++++....++... ... ........|-+|.++..+|+.++|..+|+++.
T Consensus 324 ~~~dw~~~~~~i~~L---~~~---~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 324 GTGDRRGLNTWLARL---PME---AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HccCHHHHHHHHHhc---CHh---hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 566776655555552 111 11345678888999888999999999998864
No 464
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.60 E-value=2.3e+02 Score=29.65 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735 260 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 315 (322)
Q Consensus 260 ~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA 315 (322)
...+++.+|....++- +.....+|+--|.-..+..++++|.+.|-+|
T Consensus 784 ve~~~W~eAFalAe~h---------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKH---------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhhC---------ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445555555544431 1223345666666666777777777766554
No 465
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.44 E-value=1.4e+02 Score=16.30 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHH
Q 020735 263 GKYREAIKYHSMVLQI 278 (322)
Q Consensus 263 gd~~eAi~~~~kaL~l 278 (322)
|+.+.|...|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4667788888888766
No 466
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=22.87 E-value=3.9e+02 Score=25.30 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~ 281 (322)
.+.+++..|......+++.+|+..++.|....++
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 4556778888888889999999999999876554
No 467
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=22.42 E-value=4.6e+02 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQ 277 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~ 277 (322)
.+..+..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 567789999999999999999999998743
No 468
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.16 E-value=8.4e+02 Score=24.81 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735 252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321 (322)
Q Consensus 252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~ 321 (322)
.-.+....-...+..++....+++|+...+.-........-+.-|.-++..++|++|.+....|++.+++
T Consensus 482 ~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~veP 551 (569)
T PRK04778 482 TEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEP 551 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCC
Confidence 3445556667788888899999998887776555555666777787778999999999999998887654
No 469
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.85 E-value=4.9e+02 Score=21.95 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.+..+.+++.++...|+.++|....+++..+
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888999999999999999999999888
No 470
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=21.44 E-value=2.4e+02 Score=26.76 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 288 STEAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
.+.+++..|....+.+++-+|+.+++.|.+.+
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNL 283 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45677788888888888888888888887754
No 471
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=21.29 E-value=2.3e+02 Score=25.59 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735 248 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 278 (322)
Q Consensus 248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l 278 (322)
.......+=..+...|+|++|...++-+-++
T Consensus 34 da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 34 DAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred cccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3333444555555566666666666555444
No 472
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.12 E-value=1.7e+02 Score=30.29 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 303 (322)
Q Consensus 224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g 303 (322)
.+-+...+.++|+++..+ -...=.+..+.|+++.|.+...++-...+ |..||.+....+
T Consensus 622 ~Fle~~g~~e~AL~~s~D----------~d~rFelal~lgrl~iA~~la~e~~s~~K-----------w~~Lg~~al~~~ 680 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTD----------PDQRFELALKLGRLDIAFDLAVEANSEVK-----------WRQLGDAALSAG 680 (794)
T ss_pred hHhhhccchHhhhhcCCC----------hhhhhhhhhhcCcHHHHHHHHHhhcchHH-----------HHHHHHHHhhcc
Q ss_pred CHHHHHHHHHHHHHh
Q 020735 304 DLERAARFYDKYISR 318 (322)
Q Consensus 304 d~e~A~~~~~kAl~i 318 (322)
++..|.+++.+|.+.
T Consensus 681 ~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 681 ELPLASECFLRARDL 695 (794)
T ss_pred cchhHHHHHHhhcch
No 473
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=21.00 E-value=2.6e+02 Score=26.22 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 020735 285 YSGSTEAYGAIADCYTELG-----DLERAARFYDKYIS 317 (322)
Q Consensus 285 ~~~~a~a~~~Lg~~y~~~g-----d~e~A~~~~~kAl~ 317 (322)
......++..++.+|...+ ++++|+.+.++++.
T Consensus 172 r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 172 RAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 3345567777888888888 78888888887765
No 474
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=20.94 E-value=2.4e+02 Score=21.91 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735 290 EAYGAIADCYTELGDLERAARFYDKYISRL 319 (322)
Q Consensus 290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~ 319 (322)
..++.-|..|...||.+.|-.+|-+++.++
T Consensus 39 ~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 39 NKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345556777777777777777777777665
No 475
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.56 E-value=8e+02 Score=23.92 Aligned_cols=126 Identities=12% Similarity=0.042 Sum_probs=66.2
Q ss_pred HHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHhCCChHHH
Q 020735 178 KIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFT---------EFKAALELAQNVKDPIEE 248 (322)
Q Consensus 178 al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~---------~~~kAl~l~~~~~d~~~~ 248 (322)
..+.+.+.+...|.....-..-.-.|-....+-+..+....|+......+|+. -|.+++.-..........
T Consensus 201 E~e~~~kn~a~VpK~k~~ifk~~giGliillvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klP 280 (434)
T COG4499 201 ETEKINKNYAFVPKKKYTIFKYFGIGLIILLVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLP 280 (434)
T ss_pred HHHHHhcceeecccccceehhhHHHhHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCc
Confidence 34455566666655322222211122222223344556667777666666665 244555555554444555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Q 020735 249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 311 (322)
Q Consensus 249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~ 311 (322)
..+.|.|+.+|....+.....+ +.|.-. -...+.--+.+=|+|..+|++++|+..
T Consensus 281 ksv~Y~LA~SYV~~e~L~~~kk---eNi~Nn-----islkSd~~~llYWi~~GRGe~~eAinI 335 (434)
T COG4499 281 KSVQYILAVSYVNLEDLTTTKK---ENILNN-----ISLKSDDNYLLYWIYSGRGEFKEAINI 335 (434)
T ss_pred HHHHHHHHHHHhhccccchHHH---HHHhhc-----cccccchhHHHHHHHhcCccHHHHhhH
Confidence 5678899999988766554332 222110 111122234566778888888888764
Done!