BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020737
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
C CG+ E ++LL CD CD+G+HM CL P V P G+W C C
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
C+ C G+ ++LL CD CD +H+ CL P + +P G W CPKC
Sbjct: 19 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 57 YGDVGCEQCGS----GERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
+ + C+ C S G+ A+ +L CD CD+GFHM+C P + R+P G W+C C
Sbjct: 56 WQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 57 YGDVGCEQCGS----GERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
+ + C+ C S G+ A+ +L CD CD+GFHM+C P + R+P G W+C C
Sbjct: 54 WQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
C+ C ++L+LCD+C+K FH+ CLRP + VP G W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107
C C G ELL CD C +H+ CL P + +P G WLCP+C+
Sbjct: 12 CRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 65 CGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109
C ++ +LL+CD C + +H+ CL P + +P G W+CP+C Q
Sbjct: 8 CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 61 GCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 61 GCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 192 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
C+ C ++L+CD CDKG+H CL+P++ VP W C C
Sbjct: 57 CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 55 GDYGDVGCEQ-CGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109
G G G E C ++ +LL+CD C + +H+ CL P + +P G W+CP+C Q
Sbjct: 1 GSSGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 63 EQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRRVRSFSQRKIID 122
+ C + +LL C+KC K FH+ C P ++ P G W+C C
Sbjct: 8 DWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD-------------- 53
Query: 123 FFKIKKPNLTEEKCDSPQDTRK-RRRRSASLVLQKKRRRLLPF 164
I KP + E CD+ Q ++K + + S V Q+K RLL +
Sbjct: 54 ---IGKPEV-EYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLY 92
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 63 EQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRRVRSFSQRKIID 122
+ C + ELL C+KC K FH+ C P + P G W+C C R S+ ++
Sbjct: 5 DWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFC------RDLSKPEV-- 56
Query: 123 FFKIKKPNLTEEKCDSPQDTRKRRRRSASLVL----QKKRRRLLPF 164
E CD+P ++++ + L ++K RLL F
Sbjct: 57 ----------EYDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLF 92
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 73 ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107
ELL CD C +H+ CLRP + VP G W CP+C+
Sbjct: 20 ELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
CE C ++ E++LCD C + +HM CL P + + P G W CP C
Sbjct: 14 CEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 6 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 63 EQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
++C EL+ CD C + FH+ CL P + +P GTW C C
Sbjct: 9 DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 19 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 21 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 63 EQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
++C EL+ CD C + FH+ CL P + +P GTW C C
Sbjct: 6 DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 27 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 19 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKC 106
C CG + ++ L+CD+CD FH+ CL P + VP W CP+C
Sbjct: 24 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGT-WLCPKC 106
C CG LLCD+C+ +H+ CL P + +VP W CP C
Sbjct: 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109
C C + ++ CD CD +H C+ + W CPKC+ +
Sbjct: 21 CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 34.7 bits (78), Expect = 0.081, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 62 CEQCGSGERAEEL-LLCDKCDKGFHMKCLRPIVVRVP-IGTWLCPKCSGQ 109
C CG A+E + CD C+ FH KC++ R I + CP CS +
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 34.7 bits (78), Expect = 0.081, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 59 DVGCEQCGSGERAEE--LLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110
D C C GE +L CD C+ H +C V +P G WLC C R
Sbjct: 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCLQSR 67
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 34.3 bits (77), Expect = 0.094, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 69 ERAEELLLCDKCDKGFHMKCLRPIVVRVPIGT---WLCPKC 106
E E+++CDKC +G+H C P + I + WLC +C
Sbjct: 18 EAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 251 GFTVEADGQIKDMTFIAEYIGDV--DFIRNREHDDCDSMMTLLLATDPSKSLVICPDKR- 307
G+ V A I TFI EY+G++ D + DD + L D V C D R
Sbjct: 139 GWGVRALQTIPQGTFICEYVGELISDAEADVREDD-----SYLFDLDNKDGEVYCIDARY 193
Query: 308 -GNIARFINGI 317
GNI+RFIN +
Sbjct: 194 YGNISRFINHL 204
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 251 GFTVEADGQIKDMTFIAEYIGDV--DFIRNREHDDCDSMMTLLLATDPSKSLVICPDKR- 307
G+ V A I TFI EY+G++ D + DD + L D V C D R
Sbjct: 137 GWGVRALQTIPQGTFICEYVGELISDAEADVREDD-----SYLFDLDNKDGEVYCIDARY 191
Query: 308 -GNIARFINGI 317
GNI+RFIN +
Sbjct: 192 YGNISRFINHL 202
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 59 DVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110
D C C GE + +L CD C+ H +C V +P G WLC C R
Sbjct: 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCLQSR 76
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 65 CGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
C ++ +L++C++C+ FH+ C P + VP W C C
Sbjct: 5 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 42/219 (19%)
Query: 139 PQDTRKRRRRSASLVLQKKRRRLLPFTPSEDRSQRLSQMGSLAHALTALQME-----FSD 193
P+D K + + + + KK ++ + +D R + + +E F
Sbjct: 2 PKDNNKTLKPAIAEYIVKKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYY 61
Query: 194 DLTYMPGMAPRSANQAEF--------------EEGGMQVLSKEDTET-------LEQCRA 232
Y P N+A F E G+ + ++ + + +C +
Sbjct: 62 INEYKPAPGISLVNEATFGCSCTDCFFQKCCPAEAGVLLAYNKNQQIKIPPGTPIYECNS 121
Query: 233 MCKRG-ECPPLVVV----YDSC-------EGFTVEADGQIKDMTFIAEYIGDV----DFI 276
C+ G +CP +V Y C G+ V+ +IK M+F+ EY+G+V +
Sbjct: 122 RCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAE 181
Query: 277 RNREHDDCDSMMTLLLATDPSKSLVICPDKRGNIARFIN 315
R + D + L S + + GN++ F+N
Sbjct: 182 RRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVN 220
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 65 CGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
C ++ +L++C++C+ FH+ C P + VP W C C
Sbjct: 28 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 62 CEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110
C Q GE ++ CD D + FH C+ + P G W CP+CS +R
Sbjct: 10 CHQVSYGE----MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQER 55
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 251 GFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDSMMTLLLATDPSKSLVICPDKR--G 308
G+ V + I TF+ EY+G++ I + E D + L D V C D R G
Sbjct: 157 GWGVRSLQDIPPGTFVCEYVGEL--ISDSEA-DVREEDSYLFDLDNKDGEVYCIDARFYG 213
Query: 309 NIARFIN 315
N++RFIN
Sbjct: 214 NVSRFIN 220
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 251 GFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDSMMTLLLATDPSKSLVICPDKR--G 308
G+ V + I TF+ EY+G++ I + E D + L D V C D R G
Sbjct: 158 GWGVRSLQDIPPGTFVCEYVGEL--ISDSEA-DVREEDSYLFDLDNKDGEVYCIDARFYG 214
Query: 309 NIARFIN 315
N++RFIN
Sbjct: 215 NVSRFIN 221
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 251 GFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDSMMTLLLATDPSKSLVICPDKR--G 308
G+ V + I TF+ EY+G++ I + E D + L D V C D R G
Sbjct: 156 GWGVRSLQDIPPGTFVCEYVGEL--ISDSEA-DVREEDSYLFDLDNKDGEVYCIDARFYG 212
Query: 309 NIARFIN 315
N++RFIN
Sbjct: 213 NVSRFIN 219
>pdb|3S25|A Chain A, Crystal Structure Of A Hypothetical 7-Bladed
Beta-Propeller-Like Protein (Eubrec_1955) From
Eubacterium Rectale Atcc 33656 At 1.88 A Resolution
Length = 302
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 237 GECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRNREH 281
G+ P L VV + GF A G+ ++ ++Y+ DF+ N+E+
Sbjct: 243 GDNPALCVVKNDGTGFKELAKGEFCNINVTSQYVYFTDFVSNKEY 287
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 251 GFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDSMMTLLLATDPSKSLVICPDKR--G 308
G+ V + I TF+ EY+G++ I + E D + L D V C D R G
Sbjct: 132 GWGVRSLQDIPPGTFVCEYVGEL--ISDSEA-DVREEDSYLFDLDNKDGEVYCIDARFYG 188
Query: 309 NIARFIN 315
N++RFIN
Sbjct: 189 NVSRFIN 195
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 55 GDYGDVGCEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111
G G C Q GE ++ CD D + FH C+ + P G W CP+C+ +
Sbjct: 4 GSSGYCICNQVSYGE----MVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAMK 57
Query: 112 VR 113
R
Sbjct: 58 RR 59
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 62 CEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109
C Q GE ++ CD D + FH C+ + P G W CP+CS +
Sbjct: 41 CHQVSYGE----MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 62 CEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109
C Q GE ++ CD D + FH C+ + P G W CP+CS +
Sbjct: 21 CHQVSYGE----MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 72 EELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111
+E+ + D+ + F P V V G W+C +CSG+ R
Sbjct: 29 KEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHR 68
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 62 CEQCGSGERAEELLLCD--KCD-KGFHMKCLRPIVVRVPIGTWLCPKCSG 108
C Q GE ++ CD +C + FH C+ + P G W CPKC G
Sbjct: 21 CNQVSYGE----MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 64
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 73 ELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111
E++ CD D + FH C+ + P G W CP+CS +R+
Sbjct: 22 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQERK 61
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 62 CEQCGSGERAEELLLCD--KCD-KGFHMKCLRPIVVRVPIGTWLCPKCSG 108
C Q GE ++ CD +C + FH C+ + P G W CPKC G
Sbjct: 16 CNQVSYGE----MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 73 ELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111
E++ CD D + FH C+ + P G W CP+CS +R+
Sbjct: 22 EMIGCDDPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQERK 61
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 48 HYAVVERGDYG-DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106
++ E G YG DV CG ++ CDKC H+ C+ +P T+LC +C
Sbjct: 15 YFQGSEDGSYGTDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERC 73
Query: 107 SGQRRVRSFSQRKIIDFFKIKKPNLTE 133
+ R+ + + + + K+ N+++
Sbjct: 74 ----QPRNLDKERAVLLQRRKRENMSD 96
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 62 CEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109
C Q GE ++ CD + + FH C+ + P G W CPKC G+
Sbjct: 16 CNQVSYGE----MIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKCRGE 60
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 72 EELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111
+E+ + D+ + F P V V G W+C +CSG+ R
Sbjct: 30 KEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHR 69
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 73 ELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110
E++ CD D + FH C+ + P G W CP+CS +R
Sbjct: 22 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQER 60
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 62 CEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110
C Q GE ++ CD D + FH C+ + P G W CP+C ++
Sbjct: 14 CHQVSYGE----MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQEK 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,540,206
Number of Sequences: 62578
Number of extensions: 319737
Number of successful extensions: 803
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 60
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)