Query 020737
Match_columns 322
No_of_seqs 349 out of 1473
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1083 Putative transcription 99.9 1.9E-24 4.1E-29 222.6 6.0 129 171-321 1127-1255(1306)
2 KOG4442 Clathrin coat binding 99.8 1.4E-19 2.9E-24 181.7 6.3 107 203-316 86-199 (729)
3 KOG1082 Histone H3 (Lys9) meth 99.7 4.7E-18 1E-22 165.2 5.8 86 231-316 167-278 (364)
4 KOG1080 Histone H3 (Lys4) meth 99.3 8.2E-12 1.8E-16 132.9 11.1 89 218-316 849-945 (1005)
5 COG5034 TNG2 Chromatin remodel 99.2 1.1E-11 2.4E-16 112.0 2.8 49 56-108 218-269 (271)
6 KOG1973 Chromatin remodeling p 99.1 6.4E-11 1.4E-15 111.0 3.7 50 57-110 217-269 (274)
7 KOG1244 Predicted transcriptio 99.1 4.1E-11 8.9E-16 109.2 1.7 52 57-108 279-330 (336)
8 PF00628 PHD: PHD-finger; Int 99.0 3.9E-11 8.4E-16 83.9 0.5 48 61-108 1-50 (51)
9 KOG1079 Transcriptional repres 98.9 5.3E-10 1.1E-14 112.8 2.6 89 226-316 580-671 (739)
10 KOG4299 PHD Zn-finger protein 98.8 1E-09 2.2E-14 110.2 1.7 51 59-109 253-305 (613)
11 KOG0825 PHD Zn-finger protein 98.8 1.5E-09 3.2E-14 110.8 2.1 52 58-109 214-266 (1134)
12 smart00317 SET SET (Su(var)3-9 98.8 4.1E-09 9E-14 84.2 4.0 73 241-316 1-79 (116)
13 smart00249 PHD PHD zinc finger 98.8 4E-09 8.7E-14 71.3 3.1 46 61-106 1-47 (47)
14 KOG1085 Predicted methyltransf 98.6 9E-08 2E-12 88.4 8.3 88 227-316 243-339 (392)
15 KOG1512 PHD Zn-finger protein 98.6 1.5E-08 3.2E-13 93.2 1.7 48 59-108 314-362 (381)
16 cd04718 BAH_plant_2 BAH, or Br 98.4 1.4E-07 3E-12 80.0 2.9 29 83-111 1-29 (148)
17 KOG0955 PHD finger protein BR1 98.1 1.2E-06 2.7E-11 94.1 2.6 51 57-109 217-269 (1051)
18 KOG0383 Predicted helicase [Ge 98.1 2.3E-06 4.9E-11 88.8 3.3 53 56-111 44-96 (696)
19 KOG1246 DNA-binding protein ju 98.1 4.4E-06 9.6E-11 90.4 5.7 155 59-223 155-322 (904)
20 KOG1141 Predicted histone meth 98.1 2.5E-06 5.3E-11 88.2 3.4 59 217-275 768-834 (1262)
21 KOG0954 PHD finger protein [Ge 98.1 1.2E-06 2.5E-11 89.7 1.0 51 57-109 269-321 (893)
22 KOG0957 PHD finger protein [Ge 98.0 2.5E-06 5.4E-11 84.0 3.0 50 59-108 544-597 (707)
23 KOG1245 Chromatin remodeling c 98.0 8.2E-07 1.8E-11 98.6 -0.5 55 57-111 1106-1160(1404)
24 KOG0956 PHD finger protein AF1 98.0 2.3E-06 5E-11 87.0 1.1 50 60-111 6-59 (900)
25 COG5141 PHD zinc finger-contai 97.9 5.1E-06 1.1E-10 81.7 1.4 49 59-109 193-243 (669)
26 KOG1141 Predicted histone meth 97.8 8.3E-06 1.8E-10 84.4 2.7 45 229-273 994-1046(1262)
27 KOG4443 Putative transcription 97.7 1.4E-05 2.9E-10 81.3 2.0 51 58-108 67-117 (694)
28 PF13831 PHD_2: PHD-finger; PD 97.7 5.7E-06 1.2E-10 53.8 -0.9 34 72-107 2-36 (36)
29 KOG4323 Polycomb-like PHD Zn-f 97.7 1.2E-05 2.6E-10 79.6 0.6 50 60-109 169-224 (464)
30 COG2940 Proteins containing SE 97.6 1.5E-05 3.2E-10 80.6 -0.5 81 234-315 326-410 (480)
31 KOG1081 Transcription factor N 96.4 0.003 6.4E-08 63.7 3.9 111 182-317 258-378 (463)
32 KOG1473 Nucleosome remodeling 95.9 0.0039 8.4E-08 67.2 1.9 48 59-109 344-391 (1414)
33 KOG0957 PHD finger protein [Ge 94.5 0.021 4.4E-07 57.1 2.0 50 60-109 120-179 (707)
34 PF15446 zf-PHD-like: PHD/FYVE 91.8 0.072 1.6E-06 46.2 1.1 48 61-108 1-59 (175)
35 KOG4628 Predicted E3 ubiquitin 91.7 0.1 2.2E-06 50.6 2.0 47 60-109 230-276 (348)
36 KOG0383 Predicted helicase [Ge 91.2 0.16 3.5E-06 53.4 3.1 56 79-134 1-60 (696)
37 KOG1632 Uncharacterized PHD Zn 90.0 0.22 4.8E-06 48.4 2.7 48 61-109 62-113 (345)
38 PF14446 Prok-RING_1: Prokaryo 89.7 0.18 3.9E-06 35.7 1.3 35 57-91 3-38 (54)
39 KOG4443 Putative transcription 89.2 0.12 2.5E-06 53.5 0.1 51 59-109 18-71 (694)
40 KOG4299 PHD Zn-finger protein 88.9 0.28 6.2E-06 50.4 2.5 48 59-109 47-95 (613)
41 PF11793 FANCL_C: FANCL C-term 88.8 0.044 9.6E-07 40.8 -2.5 49 60-108 3-63 (70)
42 KOG1512 PHD Zn-finger protein 88.1 0.21 4.6E-06 46.8 0.9 76 59-134 258-342 (381)
43 KOG1844 PHD Zn-finger proteins 85.6 0.46 9.9E-06 48.3 1.9 49 59-109 86-135 (508)
44 PF13639 zf-RING_2: Ring finge 85.1 0.059 1.3E-06 36.0 -3.3 43 61-107 2-44 (44)
45 PF00856 SET: SET domain; Int 84.6 0.84 1.8E-05 37.3 2.8 25 251-275 1-25 (162)
46 PF13901 DUF4206: Domain of un 79.3 1.4 3E-05 39.6 2.3 41 59-108 152-197 (202)
47 PF12861 zf-Apc11: Anaphase-pr 78.6 0.79 1.7E-05 35.5 0.5 43 65-109 38-80 (85)
48 PF07649 C1_3: C1-like domain; 77.9 0.77 1.7E-05 28.1 0.2 29 61-89 2-30 (30)
49 PF13832 zf-HC5HC2H_2: PHD-zin 72.6 1.7 3.7E-05 34.7 1.0 30 59-90 55-86 (110)
50 PF12678 zf-rbx1: RING-H2 zinc 69.8 1.2 2.6E-05 33.3 -0.5 45 59-107 19-73 (73)
51 KOG1473 Nucleosome remodeling 69.6 0.74 1.6E-05 50.4 -2.2 48 59-109 428-479 (1414)
52 PF07496 zf-CW: CW-type Zinc F 67.6 2.1 4.6E-05 29.6 0.4 32 74-106 3-35 (50)
53 KOG3612 PHD Zn-finger protein 67.5 5.2 0.00011 40.9 3.3 50 55-108 56-107 (588)
54 PF07227 DUF1423: Protein of u 66.1 3.8 8.2E-05 41.0 2.0 53 59-111 128-194 (446)
55 COG1773 Rubredoxin [Energy pro 65.0 4.2 9.1E-05 28.9 1.5 21 88-109 25-45 (55)
56 KOG2461 Transcription factor B 65.0 10 0.00022 37.7 4.8 78 238-317 26-107 (396)
57 cd00162 RING RING-finger (Real 64.9 1.7 3.7E-05 27.7 -0.5 42 62-108 2-43 (45)
58 PF10497 zf-4CXXC_R1: Zinc-fin 63.6 2.7 5.8E-05 33.9 0.4 49 59-108 7-69 (105)
59 PF13771 zf-HC5HC2H: PHD-like 58.8 4.7 0.0001 30.8 1.0 30 59-90 36-67 (90)
60 PHA02825 LAP/PHD finger-like p 58.5 3.3 7.1E-05 35.8 0.0 51 57-109 6-57 (162)
61 PF00130 C1_1: Phorbol esters/ 57.7 7.2 0.00016 26.7 1.7 32 59-90 11-44 (53)
62 KOG1734 Predicted RING-contain 57.2 4.2 9E-05 38.1 0.5 51 57-109 222-279 (328)
63 KOG1952 Transcription factor N 56.4 3 6.5E-05 44.7 -0.6 50 59-108 191-244 (950)
64 PHA02862 5L protein; Provision 56.3 3.2 7E-05 35.3 -0.4 48 60-109 3-51 (156)
65 KOG1829 Uncharacterized conser 56.3 2.9 6.4E-05 43.3 -0.7 43 59-108 511-558 (580)
66 KOG3053 Uncharacterized conser 56.2 1.8 3.9E-05 40.1 -2.0 56 54-109 15-80 (293)
67 KOG1632 Uncharacterized PHD Zn 56.0 2.1 4.5E-05 41.8 -1.8 54 56-109 236-295 (345)
68 PRK14559 putative protein seri 55.8 10 0.00023 40.0 3.2 48 60-109 2-50 (645)
69 KOG2752 Uncharacterized conser 55.6 6.4 0.00014 37.6 1.5 31 59-90 128-165 (345)
70 PHA02929 N1R/p28-like protein; 52.2 6.1 0.00013 36.5 0.7 47 58-108 173-224 (238)
71 smart00184 RING Ring finger. E 50.6 3.3 7.1E-05 25.3 -0.9 39 62-106 1-39 (39)
72 smart00744 RINGv The RING-vari 46.5 3.6 7.9E-05 28.3 -1.3 44 61-106 1-48 (49)
73 PF00301 Rubredoxin: Rubredoxi 45.3 12 0.00026 25.7 1.1 34 76-110 3-44 (47)
74 PF15446 zf-PHD-like: PHD/FYVE 45.2 16 0.00034 32.0 2.1 22 72-93 122-143 (175)
75 PF05191 ADK_lid: Adenylate ki 44.0 14 0.00029 23.9 1.2 27 76-108 3-29 (36)
76 cd00730 rubredoxin Rubredoxin; 43.4 20 0.00043 24.9 2.0 34 76-110 3-44 (50)
77 KOG3970 Predicted E3 ubiquitin 43.0 10 0.00022 34.7 0.6 54 54-109 46-103 (299)
78 cd00350 rubredoxin_like Rubred 43.0 17 0.00037 22.7 1.5 11 99-109 16-26 (33)
79 KOG1244 Predicted transcriptio 43.0 6.8 0.00015 36.7 -0.4 55 55-109 220-284 (336)
80 PLN03208 E3 ubiquitin-protein 42.4 8 0.00017 34.5 -0.1 49 58-109 17-77 (193)
81 cd00029 C1 Protein kinase C co 41.1 13 0.00029 24.6 0.9 32 59-90 11-44 (50)
82 PF14569 zf-UDP: Zinc-binding 40.7 3.6 7.8E-05 31.3 -2.1 49 57-108 7-59 (80)
83 PLN02400 cellulose synthase 40.5 20 0.00043 39.9 2.5 49 58-109 35-87 (1085)
84 PF10367 Vps39_2: Vacuolar sor 39.6 17 0.00038 28.2 1.5 31 59-90 78-108 (109)
85 PF00641 zf-RanBP: Zn-finger i 39.5 10 0.00022 23.0 0.1 13 98-110 2-14 (30)
86 PF03107 C1_2: C1 domain; Int 39.1 23 0.0005 21.6 1.6 29 61-89 2-30 (30)
87 smart00109 C1 Protein kinase C 38.9 11 0.00023 24.8 0.1 32 59-90 11-43 (49)
88 PLN02436 cellulose synthase A 38.9 20 0.00043 39.9 2.1 48 59-109 36-87 (1094)
89 PLN02189 cellulose synthase 37.9 21 0.00045 39.6 2.1 49 58-109 33-85 (1040)
90 PLN02638 cellulose synthase A 37.5 20 0.00042 39.9 1.9 49 58-109 16-68 (1079)
91 smart00547 ZnF_RBZ Zinc finger 36.6 17 0.00036 21.1 0.7 11 99-109 1-11 (26)
92 KOG1083 Putative transcription 36.1 14 0.00031 40.7 0.6 19 298-316 1238-1256(1306)
93 PF05502 Dynactin_p62: Dynacti 36.0 18 0.00039 36.9 1.3 8 101-108 53-60 (483)
94 PF14445 Prok-RING_2: Prokaryo 35.9 3.8 8.3E-05 28.5 -2.4 42 59-107 7-48 (57)
95 KOG4323 Polycomb-like PHD Zn-f 35.3 27 0.00058 35.4 2.3 51 57-109 81-133 (464)
96 PF12773 DZR: Double zinc ribb 35.1 37 0.00079 22.8 2.3 9 100-108 29-37 (50)
97 PF12906 RINGv: RING-variant d 33.6 4.8 0.0001 27.4 -2.3 43 62-106 1-47 (47)
98 PF02428 Prot_inhib_II: Potato 31.7 26 0.00056 24.6 1.1 7 262-268 45-51 (52)
99 PLN02915 cellulose synthase A 31.5 28 0.00061 38.6 1.9 49 58-109 14-66 (1044)
100 PF08746 zf-RING-like: RING-li 31.4 12 0.00026 25.0 -0.6 41 62-106 1-43 (43)
101 PLN02195 cellulose synthase A 31.4 30 0.00064 38.2 2.0 48 59-109 6-57 (977)
102 PF02108 FliH: Flagellar assem 29.0 86 0.0019 24.9 4.0 43 219-273 74-117 (128)
103 KOG1705 Uncharacterized conser 29.0 28 0.0006 27.4 0.9 50 59-109 27-78 (110)
104 TIGR03831 YgiT_finger YgiT-typ 28.0 18 0.00038 23.7 -0.2 9 100-108 32-40 (46)
105 KOG2114 Vacuolar assembly/sort 27.9 25 0.00055 38.0 0.8 39 60-108 841-880 (933)
106 smart00317 SET SET (Su(var)3-9 27.7 75 0.0016 24.2 3.4 37 231-267 74-113 (116)
107 PF06937 EURL: EURL protein; 26.7 31 0.00067 32.4 1.0 22 59-80 15-36 (285)
108 PRK04023 DNA polymerase II lar 25.9 1.1E+02 0.0024 34.1 5.1 24 56-82 623-646 (1121)
109 PF09416 UPF1_Zn_bind: RNA hel 25.7 30 0.00064 29.8 0.7 25 61-86 2-26 (152)
110 COG5574 PEX10 RING-finger-cont 24.7 22 0.00048 33.2 -0.3 48 59-111 215-262 (271)
111 KOG0317 Predicted E3 ubiquitin 23.6 28 0.0006 33.0 0.1 48 57-111 237-284 (293)
112 KOG3005 GIY-YIG type nuclease 23.2 28 0.0006 32.7 0.0 49 60-108 183-240 (276)
113 KOG3947 Phosphoesterases [Gene 22.6 81 0.0017 30.0 2.9 28 231-258 244-271 (305)
114 KOG3799 Rab3 effector RIM1 and 21.6 34 0.00073 28.9 0.2 52 58-109 64-116 (169)
115 PF13922 PHD_3: PHD domain of 21.5 20 0.00043 26.4 -1.0 28 60-92 34-61 (69)
116 KOG4218 Nuclear hormone recept 20.8 46 0.001 32.4 1.0 53 57-109 13-76 (475)
117 PRK03564 formate dehydrogenase 20.4 76 0.0016 30.5 2.4 40 58-109 186-235 (309)
118 PF04216 FdhE: Protein involve 20.1 42 0.00091 31.6 0.6 43 56-110 169-221 (290)
No 1
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.90 E-value=1.9e-24 Score=222.56 Aligned_cols=129 Identities=28% Similarity=0.280 Sum_probs=119.8
Q ss_pred hhhhhhhhhhhhhhhccCccCCCCCCCCCCCCccccChhhhhccCccccChhhhHHHHHHHHHHHhCCCCCeEEEEeCCC
Q 020737 171 SQRLSQMGSLAHALTALQMEFSDDLTYMPGMAPRSANQAEFEEGGMQVLSKEDTETLEQCRAMCKRGECPPLVVVYDSCE 250 (322)
Q Consensus 171 ~~~le~~asl~tal~~~g~~fs~~l~y~pg~a~~~~N~~~~e~~~~~v~~~ed~~~~~~~~r~~q~g~~~~l~v~~~~~k 250 (322)
..|+.++++|+.++.+.+..++..+.|.+|+++..+ .|. .+|+||..+|.+++|+||+++.+
T Consensus 1127 k~R~~~~~dL~~~~~A~n~~~~c~kg~~~g~~~cld---------------~d~---c~nqrm~r~e~cp~L~v~~gp~~ 1188 (1306)
T KOG1083|consen 1127 KIRINVYKDLQRLSKAGNNTCKCRKGRPRKQKTCLD---------------PDS---CSNQRMQRHEECPPLEVFRGPKK 1188 (1306)
T ss_pred HHHHHHHHhhhhhhhccCccccccCCCCCCCccccC---------------chh---hhhHHhhhhccCCCcceeccCCC
Confidence 899999999999999999999999999999977766 222 56799999999999999999999
Q ss_pred ceeeeecccCCCCceeEEeeeeehhhhhhhccCCCceeeeeccCCCCCcEEEcCCCCCCeeeeccCCCCCC
Q 020737 251 GFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDSMMTLLLATDPSKSLVICPDKRGNIARFINGINNYT 321 (322)
Q Consensus 251 G~gv~a~~~I~~g~fv~EY~Gev~~~~~~~~~~~~~~~~~~~~~~~~~~~vIda~~~GNiaRFiN~~~~~~ 321 (322)
||||+|+++|++|||||||||||+++++++.+ ||+++...++...|+|||+.++|+.||+||||||.
T Consensus 1189 G~~v~tk~PikagtfI~EYvGeVit~ke~e~~----mmtl~~~d~~~~cL~I~p~l~id~~R~~n~~Rfin 1255 (1306)
T KOG1083|consen 1189 GWGVRTKEPIKAGTFIMEYVGEVITEKEFEPR----MMTLYHNDDDHYCLVIDPGLFIDIPRMGNGARFIN 1255 (1306)
T ss_pred CccccccccccccchHHHHHHHHHHHHhhccc----ccccCCCCCcccccccCccccCChhhccccccccc
Confidence 99999999999999999999999999998866 89999888888999999999999999999999984
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.4e-19 Score=181.70 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=83.7
Q ss_pred ccccChhhhhccCccccC-hhhhHHHHHHHHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehhhhh---
Q 020737 203 PRSANQAEFEEGGMQVLS-KEDTETLEQCRAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRN--- 278 (322)
Q Consensus 203 ~~~~N~~~~e~~~~~v~~-~ed~~~~~~~~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~--- 278 (322)
..|.|++..-+|+...|+ =+..|++++|+ +.++.+++||.|..|||||||.++|++|+||+||+|||+..++
T Consensus 86 ~~CiNr~t~iECs~~~C~~cg~~C~NQRFQ----kkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~k 161 (729)
T KOG4442|consen 86 EDCINRMTSIECSDRECPRCGVYCKNQRFQ----KKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEK 161 (729)
T ss_pred ccccchhhhcccCCccCCCccccccchhhh----hhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHH
Confidence 388899999999998888 77777777765 5679999999999999999999999999999999999954322
Q ss_pred --hhccCCCc-eeeeeccCCCCCcEEEcCCCCCCeeeeccC
Q 020737 279 --REHDDCDS-MMTLLLATDPSKSLVICPDKRGNIARFING 316 (322)
Q Consensus 279 --~~~~~~~~-~~~~~~~~~~~~~~vIda~~~GNiaRFiN~ 316 (322)
..|+.... +.+.+.. ....+||||++||+|||||-
T Consensus 162 R~~~Y~~d~~kh~Yfm~L---~~~e~IDAT~KGnlaRFiNH 199 (729)
T KOG4442|consen 162 RVKRYAKDGIKHYYFMAL---QGGEYIDATKKGNLARFINH 199 (729)
T ss_pred HHHHHHhcCCceEEEEEe---cCCceecccccCcHHHhhcC
Confidence 33442222 2222222 23579999999999999983
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=4.7e-18 Score=165.16 Aligned_cols=86 Identities=27% Similarity=0.391 Sum_probs=67.2
Q ss_pred HHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehhhhhhhccC---------CC-ceeeeec--------
Q 020737 231 RAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRNREHDD---------CD-SMMTLLL-------- 292 (322)
Q Consensus 231 ~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~~~~~~---------~~-~~~~~~~-------- 292 (322)
+|++|.|...+|+||++..+|||||+.++|++|+|||||+|||....+.+.+. .+ +...+..
T Consensus 167 nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (364)
T KOG1082|consen 167 NRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVG 246 (364)
T ss_pred chhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhcccccccccc
Confidence 79999999999999999999999999999999999999999996655544221 11 1011111
Q ss_pred --------cCCCCCcEEEcCCCCCCeeeeccC
Q 020737 293 --------ATDPSKSLVICPDKRGNIARFING 316 (322)
Q Consensus 293 --------~~~~~~~~vIda~~~GNiaRFiN~ 316 (322)
....+..+.|||..+||||||||-
T Consensus 247 ~~~~~~~~~~~~~~~~~ida~~~GNv~RfinH 278 (364)
T KOG1082|consen 247 NTFVAPSLPGGPGRELLIDAKPHGNVARFINH 278 (364)
T ss_pred ccccccccccCCCcceEEchhhcccccccccC
Confidence 123356799999999999999984
No 4
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.31 E-value=8.2e-12 Score=132.89 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=61.1
Q ss_pred ccChhhhHHHHHHHHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehh-----hhhhhcc--C-CCceee
Q 020737 218 VLSKEDTETLEQCRAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDF-----IRNREHD--D-CDSMMT 289 (322)
Q Consensus 218 v~~~ed~~~~~~~~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~-----~~~~~~~--~-~~~~~~ 289 (322)
++.+.|+-.|++.+-.... |.--+-..-||||.|.+.|..|.||+||+||++. +++..|. . +++||.
T Consensus 849 ~~~~~~~~~~~~~~~rkk~-----~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlf 923 (1005)
T KOG1080|consen 849 ILDEAEVLRYNQLKFRKKY-----VKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLF 923 (1005)
T ss_pred ccchHHHHHHHHHhhhhhh-----hccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceee
Confidence 3444444444444322211 3333445689999999999999999999999942 3333343 3 677666
Q ss_pred eeccCCCCCcEEEcCCCCCCeeeeccC
Q 020737 290 LLLATDPSKSLVICPDKRGNIARFING 316 (322)
Q Consensus 290 ~~~~~~~~~~~vIda~~~GNiaRFiN~ 316 (322)
-++ ...|||||+.||||||||-
T Consensus 924 rid-----~~~ViDAtk~gniAr~InH 945 (1005)
T KOG1080|consen 924 RID-----DEVVVDATKKGNIARFINH 945 (1005)
T ss_pred ecc-----cceEEeccccCchhheeec
Confidence 553 4689999999999999984
No 5
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=99.17 E-value=1.1e-11 Score=112.03 Aligned_cols=49 Identities=29% Similarity=0.880 Sum_probs=43.3
Q ss_pred ccccccccccccccCCCCceeecc--cCC-CccccccCCCCCCCCCCCccCccccc
Q 020737 56 DYGDVGCEQCGSGERAEELLLCDK--CDK-GFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 56 ~~~~~~C~~C~~~~~~~~ll~Cd~--C~~-~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
+.+..+| .|++. ..|+||.||+ |.+ |||+.|++ |.+.|+|.|||++|..
T Consensus 218 e~e~lYC-fCqqv-SyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYC-FCQQV-SYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEE-Eeccc-ccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 3446778 89984 7899999995 998 99999999 9999999999999985
No 6
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=99.08 E-value=6.4e-11 Score=111.03 Aligned_cols=50 Identities=28% Similarity=0.813 Sum_probs=43.5
Q ss_pred cccccccccccccCCCCceeecc--cC-CCccccccCCCCCCCCCCCccCcccccCC
Q 020737 57 YGDVGCEQCGSGERAEELLLCDK--CD-KGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~~~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~ 110 (322)
++..+| +|. ....|.||.||. |+ .|||+.|++ |...|.|.|||+.|....
T Consensus 217 ~e~~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 217 DEPTYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCEEE-Eec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 346778 777 467899999997 99 699999999 999999999999998754
No 7
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.07 E-value=4.1e-11 Score=109.17 Aligned_cols=52 Identities=42% Similarity=1.017 Sum_probs=48.7
Q ss_pred cccccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
.+..+|.+|+..+++++||+||.|+++||++||.||+.+.|+|.|.|..|..
T Consensus 279 ieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 279 IECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 3467899999999999999999999999999999999999999999999975
No 8
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=99.04 E-value=3.9e-11 Score=83.92 Aligned_cols=48 Identities=31% Similarity=1.010 Sum_probs=42.4
Q ss_pred cccccccccCCCCceeecccCCCccccccCCCCC--CCCCCCccCccccc
Q 020737 61 GCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVV--RVPIGTWLCPKCSG 108 (322)
Q Consensus 61 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~--~~p~g~W~C~~C~~ 108 (322)
+|.+|++..+.+.||.||.|+.|||..|++|++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5889999888899999999999999999999977 45556899999974
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=98.90 E-value=5.3e-10 Score=112.75 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehhhhhhhccC---CCceeeeeccCCCCCcEEE
Q 020737 226 TLEQCRAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRNREHDD---CDSMMTLLLATDPSKSLVI 302 (322)
Q Consensus 226 ~~~~~~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~~~~~~---~~~~~~~~~~~~~~~~~vI 302 (322)
..++-+--+|+|+..++.|--...-|||+...+..-+++||.||+||++...+.+++. +-++..+|... -.++||
T Consensus 580 ~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnl--n~dyvi 657 (739)
T KOG1079|consen 580 KISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNL--NNDYVI 657 (739)
T ss_pred ccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeec--cccceE
Confidence 3444566788999999999999999999999999999999999999999887766542 12222333222 235999
Q ss_pred cCCCCCCeeeeccC
Q 020737 303 CPDKRGNIARFING 316 (322)
Q Consensus 303 da~~~GNiaRFiN~ 316 (322)
||+++||.+||+|-
T Consensus 658 Ds~rkGnk~rFANH 671 (739)
T KOG1079|consen 658 DSTRKGNKIRFANH 671 (739)
T ss_pred eeeeecchhhhccC
Confidence 99999999999984
No 10
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.83 E-value=1e-09 Score=110.25 Aligned_cols=51 Identities=31% Similarity=0.945 Sum_probs=45.6
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCC--CCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIV--VRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl--~~~p~g~W~C~~C~~~ 109 (322)
+++|..|++.+....+|+||+|++.||+.|+.||| ..+|.|.|||+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 45999999987667779999999999999999995 5599999999999874
No 11
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.81 E-value=1.5e-09 Score=110.82 Aligned_cols=52 Identities=37% Similarity=0.923 Sum_probs=48.2
Q ss_pred ccccccccccccCCCCceeecccCCC-ccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGERAEELLLCDKCDKG-FHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~~~~~ll~Cd~C~~~-~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+...|.+|...+..+.||+||.|+.+ ||++||+|+|.++|.+.|||++|.--
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 35779999999999999999999997 99999999999999999999999864
No 12
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.80 E-value=4.1e-09 Score=84.19 Aligned_cols=73 Identities=33% Similarity=0.475 Sum_probs=53.1
Q ss_pred CeEEEEeCCCceeeeecccCCCCceeEEeeeeehhhhhhhc-----cC-CCceeeeeccCCCCCcEEEcCCCCCCeeeec
Q 020737 241 PLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRNREH-----DD-CDSMMTLLLATDPSKSLVICPDKRGNIARFI 314 (322)
Q Consensus 241 ~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~vIda~~~GNiaRFi 314 (322)
+++++....+|+||.|..+|++|++|+||.|++........ +. +.....++.. ...++||+...||++|||
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~~~~~~~i 77 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEI---DSDLCIDARRKGNIARFI 77 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEEC---CCCEEEeCCccCcHHHee
Confidence 46788889999999999999999999999999954333221 11 1101222222 225899999999999999
Q ss_pred cC
Q 020737 315 NG 316 (322)
Q Consensus 315 N~ 316 (322)
|-
T Consensus 78 NH 79 (116)
T smart00317 78 NH 79 (116)
T ss_pred CC
Confidence 84
No 13
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=98.65 E-value=9e-08 Score=88.41 Aligned_cols=88 Identities=26% Similarity=0.310 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehhhhh-------hhcc-CCCceeeeeccCCCCC
Q 020737 227 LEQCRAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRN-------REHD-DCDSMMTLLLATDPSK 298 (322)
Q Consensus 227 ~~~~~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~-------~~~~-~~~~~~~~~~~~~~~~ 298 (322)
-......+..|-.-.|.+.+-..||-||+|.....+|.||.||+|+++...+ +..| .-.++|++|.+. ++
T Consensus 243 ~~~l~~~vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~--sk 320 (392)
T KOG1085|consen 243 KHALRDTVLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN--SK 320 (392)
T ss_pred HHHHHHHHHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc--Ce
Confidence 3445677888999999999988899999999999999999999999954222 2223 345688888775 47
Q ss_pred cEEEcCCCC-CCeeeeccC
Q 020737 299 SLVICPDKR-GNIARFING 316 (322)
Q Consensus 299 ~~vIda~~~-GNiaRFiN~ 316 (322)
.++|||++- +-++|.||-
T Consensus 321 ~yCiDAT~et~~lGRLINH 339 (392)
T KOG1085|consen 321 KYCIDATKETPWLGRLINH 339 (392)
T ss_pred eeeeecccccccchhhhcc
Confidence 899999986 668999873
No 15
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.59 E-value=1.5e-08 Score=93.21 Aligned_cols=48 Identities=33% Similarity=0.807 Sum_probs=44.0
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCc-cccc
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCP-KCSG 108 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~-~C~~ 108 (322)
...|.+|+++.-++++++||.|+++||.+|++ |..+|.|.|+|. .|..
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCRE 362 (381)
T ss_pred cHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHH
Confidence 56799999999999999999999999999999 999999999998 4654
No 16
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.42 E-value=1.4e-07 Score=80.01 Aligned_cols=29 Identities=48% Similarity=1.212 Sum_probs=26.8
Q ss_pred CccccccCCCCCCCCCCCccCcccccCCc
Q 020737 83 GFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (322)
Q Consensus 83 ~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~ 111 (322)
+||+.||+|||..+|+|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 69999999999999999999999998654
No 17
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.11 E-value=1.2e-06 Score=94.08 Aligned_cols=51 Identities=31% Similarity=0.800 Sum_probs=45.5
Q ss_pred cccccccccccccCC--CCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 57 YGDVGCEQCGSGERA--EELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~--~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+++..|.||..++-. ..+|+||.|+..+|+.|++ +.-+|+|.|+|..|...
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccC
Confidence 447889999998755 8999999999999999999 67799999999999875
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.07 E-value=2.3e-06 Score=88.83 Aligned_cols=53 Identities=38% Similarity=0.929 Sum_probs=47.3
Q ss_pred ccccccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccCCc
Q 020737 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (322)
Q Consensus 56 ~~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~ 111 (322)
+.+...|.+|..+ +.+++||.|+.+||.+|+++|+...|.++|.|+.|.....
T Consensus 44 ~~~~e~c~ic~~~---g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 44 DAEQEACRICADG---GELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhhhcCC---CcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 3456889999998 9999999999999999999999999999999999955433
No 19
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.06 E-value=4.4e-06 Score=90.42 Aligned_cols=155 Identities=23% Similarity=0.363 Sum_probs=108.0
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC-----Ccccccc----hhhhhhhhcccCC
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ-----RRVRSFS----QRKIIDFFKIKKP 129 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~-----~~~~~~~----~~~~~~f~~~~k~ 129 (322)
...|..|.++... .++.|+.|...+|..|..|++..++.|+|.|+.|... ....+|+ .+.+..|-++...
T Consensus 155 ~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~ 233 (904)
T KOG1246|consen 155 YPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADN 233 (904)
T ss_pred chhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhh
Confidence 4679999998766 4449999999999999999999999999999999886 2223333 2334444333332
Q ss_pred cccccccCCCcccccccccCchhHHHHHhhhcCCCCCCCcchhhhhhhhhhhhhhhccCccCCCCCCCCC----CCCccc
Q 020737 130 NLTEEKCDSPQDTRKRRRRSASLVLQKKRRRLLPFTPSEDRSQRLSQMGSLAHALTALQMEFSDDLTYMP----GMAPRS 205 (322)
Q Consensus 130 ~~~~~~~~~~~~~~kk~~~~~~l~~~~~~r~~lp~vp~~d~~~~le~~asl~tal~~~g~~fs~~l~y~p----g~a~~~ 205 (322)
+.... +. ++.+... ..+.+++++|..|++....+.+.|++++.+...++|++.+..-+-.. .+....
T Consensus 234 ~~~~~------~~-~~~~~~~--~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~ 304 (904)
T KOG1246|consen 234 FKKDY------FP-KSKNSPD--STEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSG 304 (904)
T ss_pred hhccc------cc-cccCCCC--chHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCc
Confidence 22211 11 1111111 16688999999999998888899999999999999999777766652 566667
Q ss_pred cChhhhhccCccccChhh
Q 020737 206 ANQAEFEEGGMQVLSKED 223 (322)
Q Consensus 206 ~N~~~~e~~~~~v~~~ed 223 (322)
||+-.....-..|++-++
T Consensus 305 wnL~~i~~~~~svl~~~~ 322 (904)
T KOG1246|consen 305 WNLNNIPRLEGSVLSHID 322 (904)
T ss_pred ccccccccCCcccccccc
Confidence 766655554444554443
No 20
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.06 E-value=2.5e-06 Score=88.18 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=51.4
Q ss_pred cccChhhhHHHHHH--------HHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehh
Q 020737 217 QVLSKEDTETLEQC--------RAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDF 275 (322)
Q Consensus 217 ~v~~~ed~~~~~~~--------~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~ 275 (322)
..++..=+|-+..| +||+|.|.+.+|.+|.+.+||||+|...+|.+|+|||=|.|-+..
T Consensus 768 e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~ 834 (1262)
T KOG1141|consen 768 EIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALL 834 (1262)
T ss_pred HhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhh
Confidence 44555556665555 799999999999999999999999999999999999999999954
No 21
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.06 E-value=1.2e-06 Score=89.65 Aligned_cols=51 Identities=39% Similarity=0.921 Sum_probs=45.8
Q ss_pred ccccccccccccc--CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 57 YGDVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 57 ~~~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+++.+|.+|..++ ..++||+||.|....|+.|++ |.++|+|.|.|..|.-+
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 3578899999985 468999999999999999999 89999999999999654
No 22
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.05 E-value=2.5e-06 Score=84.00 Aligned_cols=50 Identities=30% Similarity=0.835 Sum_probs=45.5
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCCCC----CccCccccc
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIG----TWLCPKCSG 108 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g----~W~C~~C~~ 108 (322)
...|.||.+..+-..++.||.|...||+.||+|||+.+|.. -|.|.+|.+
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 36799999988888999999999999999999999999988 499999954
No 23
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.04 E-value=8.2e-07 Score=98.62 Aligned_cols=55 Identities=42% Similarity=1.035 Sum_probs=50.4
Q ss_pred cccccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccCCc
Q 020737 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~ 111 (322)
.....|.+|........|+.||.|..+||++|+.|.+..+|.|+|+||.|.....
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 4467899999988888999999999999999999999999999999999998653
No 24
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.96 E-value=2.3e-06 Score=86.96 Aligned_cols=50 Identities=38% Similarity=0.959 Sum_probs=42.8
Q ss_pred cccccccccc--CCCCceeecc--cCCCccccccCCCCCCCCCCCccCcccccCCc
Q 020737 60 VGCEQCGSGE--RAEELLLCDK--CDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (322)
Q Consensus 60 ~~C~~C~~~~--~~~~ll~Cd~--C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~ 111 (322)
.-|+||.+.. .+..||.||+ |..+.|+.|++ +.++|.|.|||..|..+..
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqer 59 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQER 59 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhh
Confidence 4588998754 3578999995 99999999999 8999999999999987543
No 25
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.85 E-value=5.1e-06 Score=81.67 Aligned_cols=49 Identities=33% Similarity=0.803 Sum_probs=43.0
Q ss_pred cccccccccccC--CCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~--~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+..|.+|...+. ...+++||+|+...|+.|++ +.-+|+|.|+|..|.-+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~ 243 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhccc
Confidence 678999988653 46789999999999999999 77899999999999864
No 26
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.84 E-value=8.3e-06 Score=84.39 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCCeEE--------EEeCCCceeeeecccCCCCceeEEeeeee
Q 020737 229 QCRAMCKRGECPPLVV--------VYDSCEGFTVEADGQIKDMTFIAEYIGDV 273 (322)
Q Consensus 229 ~~~r~~q~g~~~~l~v--------~~~~~kG~gv~a~~~I~~g~fv~EY~Gev 273 (322)
+.+|++|.|...+.+| |.+..-|||++++-+|+.-+|||||+|-.
T Consensus 994 e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~p 1046 (1262)
T KOG1141|consen 994 EYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAP 1046 (1262)
T ss_pred ccchhhhcCCccceeeeecccccccccccccccccccccCCCCcccccccCCC
Confidence 3478999998887776 56778999999999999999999999988
No 27
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.72 E-value=1.4e-05 Score=81.32 Aligned_cols=51 Identities=39% Similarity=0.980 Sum_probs=46.8
Q ss_pred ccccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 58 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
+..+|..|+...++..+++|+.|+..||.+|..|++..+|.|.|+|+.|..
T Consensus 67 ~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 67 SCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred CceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 357788889888999999999999999999999999999999999999965
No 28
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.68 E-value=5.7e-06 Score=53.77 Aligned_cols=34 Identities=44% Similarity=1.132 Sum_probs=20.5
Q ss_pred CCceeecccCCCccccccCCCCCCCCCC-CccCcccc
Q 020737 72 EELLLCDKCDKGFHMKCLRPIVVRVPIG-TWLCPKCS 107 (322)
Q Consensus 72 ~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g-~W~C~~C~ 107 (322)
+.||.|+.|...+|..|++ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 5789999999999999999 6777777 89999884
No 29
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.67 E-value=1.2e-05 Score=79.64 Aligned_cols=50 Identities=30% Similarity=0.863 Sum_probs=40.3
Q ss_pred cccccccccc--CCCCceeecccCCCccccccCCCCCCC----CCCCccCcccccC
Q 020737 60 VGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRV----PIGTWLCPKCSGQ 109 (322)
Q Consensus 60 ~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~----p~g~W~C~~C~~~ 109 (322)
..|.+|..+. ....||+|+.|..|||..|+.|+++.+ +..+|||-.|..+
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 3477877654 456999999999999999999998653 4447999999875
No 30
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.55 E-value=1.5e-05 Score=80.58 Aligned_cols=81 Identities=27% Similarity=0.265 Sum_probs=57.1
Q ss_pred HHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEeeeeehhhhhhhccCCCc----eeeeeccCCCCCcEEEcCCCCCC
Q 020737 234 CKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDS----MMTLLLATDPSKSLVICPDKRGN 309 (322)
Q Consensus 234 ~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~~~~~~~~~----~~~~~~~~~~~~~~vIda~~~GN 309 (322)
.......+.+|.....+||||.|.+.|++|+||.||.|+++...+.......+ ....+... .....+||+...||
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~g~ 404 (480)
T COG2940 326 GCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLL-EDKDKVRDSQKAGD 404 (480)
T ss_pred ccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhc-cccchhhhhhhccc
Confidence 34455667777788999999999999999999999999986544432221111 11111111 12278999999999
Q ss_pred eeeecc
Q 020737 310 IARFIN 315 (322)
Q Consensus 310 iaRFiN 315 (322)
++||||
T Consensus 405 ~~r~~n 410 (480)
T COG2940 405 VARFIN 410 (480)
T ss_pred ccceee
Confidence 999998
No 31
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=96.39 E-value=0.003 Score=63.65 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=64.4
Q ss_pred hhhhccCccCCCCCCCCCCCCccccC--hhhhhccCccccChhhhHHHHHHHHHHHhCCCCCeEEEEeCCCceeeeeccc
Q 020737 182 HALTALQMEFSDDLTYMPGMAPRSAN--QAEFEEGGMQVLSKEDTETLEQCRAMCKRGECPPLVVVYDSCEGFTVEADGQ 259 (322)
Q Consensus 182 tal~~~g~~fs~~l~y~pg~a~~~~N--~~~~e~~~~~v~~~ed~~~~~~~~r~~q~g~~~~l~v~~~~~kG~gv~a~~~ 259 (322)
+....++..-++++..--|......+ +..+....+.+++.+..+.++++.... ++. ..+ .|..+
T Consensus 258 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sk~~----~~e------~~~----~~~~~ 323 (463)
T KOG1081|consen 258 SCIKKLLAKPTDEKPNSRGASEEATKSEKMLAYEVHPKVCSAEERCHNQQFSKES----YPE------PQK----TAKAD 323 (463)
T ss_pred hhhhhccccccccccccCCcHHHhhhhHHhhhhhhcccccccccccccchhhhhc----ccc------cch----hhHHh
Confidence 34455555555554433344333444 444455567778888877777774222 111 122 67777
Q ss_pred CCCCceeEEeeeeehhhhhhhcc--------CCCceeeeeccCCCCCcEEEcCCCCCCeeeeccCC
Q 020737 260 IKDMTFIAEYIGDVDFIRNREHD--------DCDSMMTLLLATDPSKSLVICPDKRGNIARFINGI 317 (322)
Q Consensus 260 I~~g~fv~EY~Gev~~~~~~~~~--------~~~~~~~~~~~~~~~~~~vIda~~~GNiaRFiN~~ 317 (322)
|.+| +|+|+..++..++ ..+.+|.++. +..+||+..+||++||+|+=
T Consensus 324 ~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e-----~~~~id~~~~~n~sr~~nh~ 378 (463)
T KOG1081|consen 324 IRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQ-----KDRIIDAGPKGNYSRFLNHS 378 (463)
T ss_pred hhcc------cCcccchhhheeehhhhhccchhhhhhhhhh-----cccccccccccchhhhhccc
Confidence 7777 9999655543332 2222333322 22389999999999999985
No 32
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.87 E-value=0.0039 Score=67.18 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=44.4
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
++.|.+|++. +.++||..|++.||+.|+.||...+|+..|-|.-|..-
T Consensus 344 ddhcrf~~d~---~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 344 DDHCRFCHDL---GDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred cccccccCcc---cceeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 5789999988 89999999999999999999999999999999999753
No 33
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.46 E-value=0.021 Score=57.07 Aligned_cols=50 Identities=36% Similarity=0.743 Sum_probs=38.5
Q ss_pred ccccccccc--cCCCCceeecccCCCccccccCCCC-CCCCCC-------CccCcccccC
Q 020737 60 VGCEQCGSG--ERAEELLLCDKCDKGFHMKCLRPIV-VRVPIG-------TWLCPKCSGQ 109 (322)
Q Consensus 60 ~~C~~C~~~--~~~~~ll~Cd~C~~~~H~~Cl~Ppl-~~~p~g-------~W~C~~C~~~ 109 (322)
.+|.||-.. ++.+++|.||.|+...|-.|++.-- ..+|.| .|||.-|..+
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 479999764 4678999999999999999998530 123433 5999999775
No 34
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=91.81 E-value=0.072 Score=46.20 Aligned_cols=48 Identities=31% Similarity=0.812 Sum_probs=35.9
Q ss_pred cccccc---cccCCCCceeecccCCCccccccCCCCCC------CCCC--CccCccccc
Q 020737 61 GCEQCG---SGERAEELLLCDKCDKGFHMKCLRPIVVR------VPIG--TWLCPKCSG 108 (322)
Q Consensus 61 ~C~~C~---~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~------~p~g--~W~C~~C~~ 108 (322)
.|.+|+ .....|.||.|-+|-.+||..|+++-... +-.+ --.|..|+.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 377884 34467999999999999999999987533 3333 256888875
No 35
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.1 Score=50.58 Aligned_cols=47 Identities=23% Similarity=0.592 Sum_probs=38.9
Q ss_pred ccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 60 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
..|.||-.....|+.|-==-|...||..|++|+|..- .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 5899999987777777667799999999999998763 3389999874
No 36
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=91.15 E-value=0.16 Score=53.38 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=45.1
Q ss_pred ccCCCccccccCCCCCCCCCCCccCcccccCCc----ccccchhhhhhhhcccCCccccc
Q 020737 79 KCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR----VRSFSQRKIIDFFKIKKPNLTEE 134 (322)
Q Consensus 79 ~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~----~~~~~~~~~~~f~~~~k~~~~~~ 134 (322)
.|++.||..|+.|.+...|+++|.||.|..... ......+..++++++|.+++...
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g~~l 60 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGGELL 60 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCCCcEE
Confidence 489999999999999999999999999976421 12224688899999999996643
No 37
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=90.05 E-value=0.22 Score=48.44 Aligned_cols=48 Identities=21% Similarity=0.543 Sum_probs=38.9
Q ss_pred cccccccccCCC-CceeecccCCCccccc--cCCCCCCCCCC-CccCcccccC
Q 020737 61 GCEQCGSGERAE-ELLLCDKCDKGFHMKC--LRPIVVRVPIG-TWLCPKCSGQ 109 (322)
Q Consensus 61 ~C~~C~~~~~~~-~ll~Cd~C~~~~H~~C--l~Ppl~~~p~g-~W~C~~C~~~ 109 (322)
+| .|....++. .|+.||.|..|||..| ++++..+.|.- .|+|..|...
T Consensus 62 ~~-~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 62 YC-KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEA 113 (345)
T ss_pred hh-hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchh
Confidence 55 677766665 8899999999999999 99877665544 7999999875
No 38
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.71 E-value=0.18 Score=35.65 Aligned_cols=35 Identities=23% Similarity=0.788 Sum_probs=29.5
Q ss_pred ccccccccccccc-CCCCceeecccCCCccccccCC
Q 020737 57 YGDVGCEQCGSGE-RAEELLLCDKCDKGFHMKCLRP 91 (322)
Q Consensus 57 ~~~~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~P 91 (322)
+....|.+|+..- +.+.+|.|..|...||-.|+..
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3457899999875 4788999999999999999964
No 39
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.23 E-value=0.12 Score=53.46 Aligned_cols=51 Identities=33% Similarity=0.772 Sum_probs=39.2
Q ss_pred ccccccccccc--CCCCceeecccCCCccccccCCCCCCC-CCCCccCcccccC
Q 020737 59 DVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRV-PIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~-p~g~W~C~~C~~~ 109 (322)
...|.+|+... .++.|+.|..|..-||.+|+...+... -.+-|-|+.|..-
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 46688887643 567899999999999999999665542 2334999999874
No 40
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.86 E-value=0.28 Score=50.41 Aligned_cols=48 Identities=31% Similarity=0.726 Sum_probs=41.1
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCC-CCCccCcccccC
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVP-IGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p-~g~W~C~~C~~~ 109 (322)
...|.+|.++ +.+++|+.|+..||..|-++++...- .+.|.|..|...
T Consensus 47 ~ts~~~~~~~---gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSG---GNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhc---CCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 5679999998 99999999999999999999987533 348999999874
No 41
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=88.77 E-value=0.044 Score=40.82 Aligned_cols=49 Identities=29% Similarity=0.588 Sum_probs=20.7
Q ss_pred ccccccccccC-CC--Cceeec--ccCCCccccccCCCCCCCCCC-------CccCccccc
Q 020737 60 VGCEQCGSGER-AE--ELLLCD--KCDKGFHMKCLRPIVVRVPIG-------TWLCPKCSG 108 (322)
Q Consensus 60 ~~C~~C~~~~~-~~--~ll~Cd--~C~~~~H~~Cl~Ppl~~~p~g-------~W~C~~C~~ 108 (322)
..|.||..... .+ ..+.|+ .|...||..||--.+...+.+ .+-||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 56899987543 23 457898 899999999996544322221 367999986
No 42
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.08 E-value=0.21 Score=46.80 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=51.8
Q ss_pred ccccccccccc------CCCCceeecccCCCccccccCCCCC---CCCCCCccCcccccCCcccccchhhhhhhhcccCC
Q 020737 59 DVGCEQCGSGE------RAEELLLCDKCDKGFHMKCLRPIVV---RVPIGTWLCPKCSGQRRVRSFSQRKIIDFFKIKKP 129 (322)
Q Consensus 59 ~~~C~~C~~~~------~~~~ll~Cd~C~~~~H~~Cl~Ppl~---~~p~g~W~C~~C~~~~~~~~~~~~~~~~f~~~~k~ 129 (322)
...|.+|.++. ....||+|..|...+|.+|+.-+.. .+..-.|.|-+|.--..--.-..+..+-|+.+|.+
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDR 337 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDR 337 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccccC
Confidence 46688887753 3478999999999999999985421 13334799999954321111114456678999988
Q ss_pred ccccc
Q 020737 130 NLTEE 134 (322)
Q Consensus 130 ~~~~~ 134 (322)
+-..+
T Consensus 338 G~HT~ 342 (381)
T KOG1512|consen 338 GPHTL 342 (381)
T ss_pred CCCcc
Confidence 87665
No 43
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=85.57 E-value=0.46 Score=48.27 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=40.8
Q ss_pred cccccccccccC-CCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~-~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
...| +|+..++ .+.|+.|+.|..|-|..|++..-... ...+.|..|...
T Consensus 86 ~~~c-~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~~~ 135 (508)
T KOG1844|consen 86 ISRC-DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICTPR 135 (508)
T ss_pred cccc-ccccccCCCceeeCCcccCcccCceeeeecCCCC-chhceeeeeccc
Confidence 4567 8998888 89999999999999999999654444 457999999875
No 44
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=85.10 E-value=0.059 Score=36.00 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=29.5
Q ss_pred cccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccc
Q 020737 61 GCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107 (322)
Q Consensus 61 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~ 107 (322)
.|.||...-..+..+.--.|+-.||..|+...+.. ...||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 58899887644444444349999999999876644 23888884
No 45
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=84.61 E-value=0.84 Score=37.29 Aligned_cols=25 Identities=20% Similarity=-0.057 Sum_probs=20.5
Q ss_pred ceeeeecccCCCCceeEEeeeeehh
Q 020737 251 GFTVEADGQIKDMTFIAEYIGDVDF 275 (322)
Q Consensus 251 G~gv~a~~~I~~g~fv~EY~Gev~~ 275 (322)
|+||.|.++|++|++|+++.+-+..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~ 25 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILT 25 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEE
T ss_pred CEEEEECccCCCCCEEEEECcceEE
Confidence 8999999999999999988888843
No 46
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.31 E-value=1.4 Score=39.63 Aligned_cols=41 Identities=37% Similarity=0.876 Sum_probs=31.8
Q ss_pred ccccccccccc-----CCCCceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 59 DVGCEQCGSGE-----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 59 ~~~C~~C~~~~-----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
..+|.+|...+ +.+....|..|...||..|+.. =.||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 46788888754 2357789999999999999982 13999975
No 47
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=78.57 E-value=0.79 Score=35.49 Aligned_cols=43 Identities=26% Similarity=0.528 Sum_probs=28.4
Q ss_pred cccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 65 CGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 65 C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
|.-+.+.-.++.+ .|...||+.|+...|... ...=.||-|+..
T Consensus 38 Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 38 CKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred ccCCCCCCceeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 3333333344433 599999999998777653 234599999874
No 48
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=77.90 E-value=0.77 Score=28.14 Aligned_cols=29 Identities=28% Similarity=0.753 Sum_probs=12.3
Q ss_pred cccccccccCCCCceeecccCCCcccccc
Q 020737 61 GCEQCGSGERAEELLLCDKCDKGFHMKCL 89 (322)
Q Consensus 61 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl 89 (322)
.|.+|+.....+..-.|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899987555466689999999999883
No 49
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=72.58 E-value=1.7 Score=34.66 Aligned_cols=30 Identities=30% Similarity=0.882 Sum_probs=26.0
Q ss_pred cccccccccccCCCCceeecc--cCCCccccccC
Q 020737 59 DVGCEQCGSGERAEELLLCDK--CDKGFHMKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~--C~~~~H~~Cl~ 90 (322)
...|.+|++. .|..+.|.. |..+||..|..
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 5789999986 488999987 99999999975
No 50
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=69.85 E-value=1.2 Score=33.31 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=28.5
Q ss_pred cccccccccccC----------CCCceeecccCCCccccccCCCCCCCCCCCccCcccc
Q 020737 59 DVGCEQCGSGER----------AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107 (322)
Q Consensus 59 ~~~C~~C~~~~~----------~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~ 107 (322)
++.|.||...-. .+..+.=..|+-.||..|+...|..- ..||-|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 344999987531 12233334699999999998766543 3898885
No 51
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=69.64 E-value=0.74 Score=50.42 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=39.3
Q ss_pred cccccccccccCCCCceeecc-cCCCccc-cccC--CCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGERAEELLLCDK-CDKGFHM-KCLR--PIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~-C~~~~H~-~Cl~--Ppl~~~p~g~W~C~~C~~~ 109 (322)
...|.+|+.. +.+++|++ |+..||+ .|++ ..-..++.+-|+|++|...
T Consensus 428 ~rrl~Ie~~d---et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 428 SRRLRIEGMD---ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIR 479 (1414)
T ss_pred eeeeEEecCC---CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHH
Confidence 4568888865 88999997 9999999 9999 3334588899999999764
No 52
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=67.64 E-value=2.1 Score=29.58 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.8
Q ss_pred ceeecccCCCcccc-ccCCCCCCCCCCCccCccc
Q 020737 74 LLLCDKCDKGFHMK-CLRPIVVRVPIGTWLCPKC 106 (322)
Q Consensus 74 ll~Cd~C~~~~H~~-Cl~Ppl~~~p~g~W~C~~C 106 (322)
-|+||.|.+|-.+. .+.+.+..+|. .|+|..-
T Consensus 3 WVQCd~C~KWR~lp~~~~~~~~~~~d-~W~C~~n 35 (50)
T PF07496_consen 3 WVQCDSCLKWRRLPEEVDPIREELPD-PWYCSMN 35 (50)
T ss_dssp EEE-TTT--EEEE-CCHHCTSCCSST-T--GGGS
T ss_pred EEECCCCCceeeCChhhCcccccCCC-eEEcCCC
Confidence 47899999988775 33322245666 8999873
No 53
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=67.53 E-value=5.2 Score=40.87 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=39.3
Q ss_pred cccccccccccccccCCCCceeecccCCCccccccCCCCCCCCCC--CccCccccc
Q 020737 55 GDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIG--TWLCPKCSG 108 (322)
Q Consensus 55 ~~~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g--~W~C~~C~~ 108 (322)
....+.+|.-|.-. +..+.|+.|-+.||..|..|- ...+.. -|.||.|..
T Consensus 56 ~~N~d~~cfechlp---g~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 56 SSNIDPFCFECHLP---GAVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPYS 107 (588)
T ss_pred ccCCCcccccccCC---cceeeeehhhccccccccCcc-hhhccccccccCCcccc
Confidence 33447889999987 899999999999999999875 333332 588888865
No 54
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=66.08 E-value=3.8 Score=40.96 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=36.3
Q ss_pred ccccccccccc---CCCCceeecccCCCccccccC--------CCCCC---CCCCCccCcccccCCc
Q 020737 59 DVGCEQCGSGE---RAEELLLCDKCDKGFHMKCLR--------PIVVR---VPIGTWLCPKCSGQRR 111 (322)
Q Consensus 59 ~~~C~~C~~~~---~~~~ll~Cd~C~~~~H~~Cl~--------Ppl~~---~p~g~W~C~~C~~~~~ 111 (322)
...|.+|++-+ ++-..|.||.|..|-|..|-- +.... ..++.++|..|-....
T Consensus 128 ~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 128 RCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred cCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 35678888754 345667899999999999852 11111 1344799999987543
No 55
>COG1773 Rubredoxin [Energy production and conversion]
Probab=64.98 E-value=4.2 Score=28.88 Aligned_cols=21 Identities=24% Similarity=0.669 Sum_probs=13.7
Q ss_pred ccCCCCCCCCCCCccCcccccC
Q 020737 88 CLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 88 Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
|-+.+...+|. +|.||.|-..
T Consensus 25 ~pgT~fedlPd-~w~CP~Cg~~ 45 (55)
T COG1773 25 APGTPFEDLPD-DWVCPECGVG 45 (55)
T ss_pred CCCCchhhCCC-ccCCCCCCCC
Confidence 33434455654 7999999863
No 56
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=64.97 E-value=10 Score=37.69 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCCCeEEEEe--CCCceeeeecccCCCCceeEEeeeeehhhhhhhccCCCceeeeeccCCCCCcEEEcCCC--CCCeeee
Q 020737 238 ECPPLVVVYD--SCEGFTVEADGQIKDMTFIAEYIGDVDFIRNREHDDCDSMMTLLLATDPSKSLVICPDK--RGNIARF 313 (322)
Q Consensus 238 ~~~~l~v~~~--~~kG~gv~a~~~I~~g~fv~EY~Gev~~~~~~~~~~~~~~~~~~~~~~~~~~~vIda~~--~GNiaRF 313 (322)
+-+.|.++.. ...|.||.+...|++|+---=|+||+......+..++. +|-++...+ ..-.+||++- .+|.-||
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~~~~n~~-y~W~I~~~d-~~~~~iDg~d~~~sNWmRY 103 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDSKSANNR-YMWEIFSSD-NGYEYIDGTDEEHSNWMRY 103 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccccccccccCc-ceEEEEeCC-CceEEeccCChhhcceeee
Confidence 5677888876 55778999999999999999999997222222222233 333333333 2346788875 4999999
Q ss_pred ccCC
Q 020737 314 INGI 317 (322)
Q Consensus 314 iN~~ 317 (322)
+|-+
T Consensus 104 V~~A 107 (396)
T KOG2461|consen 104 VNSA 107 (396)
T ss_pred eccc
Confidence 9864
No 57
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=64.93 E-value=1.7 Score=27.74 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=28.7
Q ss_pred ccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 62 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
|.+|...- ...+.-..|+..||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 67777653 233444569999999999755443 4567999874
No 58
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=63.58 E-value=2.7 Score=33.86 Aligned_cols=49 Identities=31% Similarity=0.672 Sum_probs=32.0
Q ss_pred cccccccccccCCCCceee------ccc---CCCccccccCCCCC-----CCCCCCccCccccc
Q 020737 59 DVGCEQCGSGERAEELLLC------DKC---DKGFHMKCLRPIVV-----RVPIGTWLCPKCSG 108 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~C------d~C---~~~~H~~Cl~Ppl~-----~~p~g~W~C~~C~~ 108 (322)
...|..|.+-.. +..+.| ..| ...|=..||.-.-. .+..++|.||.|+.
T Consensus 7 g~~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTL-DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCC-CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 567999988543 334456 566 66777777643322 24456899999975
No 59
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=58.76 E-value=4.7 Score=30.77 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=25.1
Q ss_pred cccccccccccCCCCceeec--ccCCCccccccC
Q 020737 59 DVGCEQCGSGERAEELLLCD--KCDKGFHMKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~ 90 (322)
...|.+|++. .|..|.|. .|...||..|..
T Consensus 36 ~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 36 KLKCSICKKK--GGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHc
Confidence 4679999975 47888897 599999999986
No 60
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=58.50 E-value=3.3 Score=35.80 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=35.7
Q ss_pred cccccccccccccCCCCce-eecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 57 YGDVGCEQCGSGERAEELL-LCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~~~ll-~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
..+..|.+|..+.+..... .|.+--++.|..|+.-.+.. .+...|+.|..+
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~--s~~~~CeiC~~~ 57 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINT--SKNKSCKICNGP 57 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhc--CCCCcccccCCe
Confidence 3467899998875433222 23445569999999877664 467899999864
No 61
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=57.71 E-value=7.2 Score=26.67 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=25.1
Q ss_pred ccccccccccc--CCCCceeecccCCCccccccC
Q 020737 59 DVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~ 90 (322)
...|.+|++.- .....+.|..|....|..|+.
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 46799999865 456778999999999999987
No 62
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.20 E-value=4.2 Score=38.12 Aligned_cols=51 Identities=24% Similarity=0.488 Sum_probs=32.9
Q ss_pred cccccccccccccCCCC----ce---eecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 57 YGDVGCEQCGSGERAEE----LL---LCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~~~----ll---~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
.++.+|.+|++.-+... ++ .=-.|+..||-.|.... .+-...-.||-|+++
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHH
Confidence 45789999998632211 11 11269999999998743 121224689999875
No 63
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=56.45 E-value=3 Score=44.68 Aligned_cols=50 Identities=24% Similarity=0.686 Sum_probs=36.8
Q ss_pred ccccccccccc-CCCCceeecccCCCccccccCCCCCC-CCC--CCccCccccc
Q 020737 59 DVGCEQCGSGE-RAEELLLCDKCDKGFHMKCLRPIVVR-VPI--GTWLCPKCSG 108 (322)
Q Consensus 59 ~~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~Ppl~~-~p~--g~W~C~~C~~ 108 (322)
-..|.||-... ....++-|..|...||+.|..-+-.. .-. ..|-||.|..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 46699997754 45778899999999999998644211 112 3699999985
No 64
>PHA02862 5L protein; Provisional
Probab=56.30 E-value=3.2 Score=35.30 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=34.6
Q ss_pred ccccccccccCCCCce-eecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 60 VGCEQCGSGERAEELL-LCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 60 ~~C~~C~~~~~~~~ll-~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
..|.+|...+++..-- .|-+--+|.|..||.-.+.. .+.=.|+.|..+
T Consensus 3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~--S~k~~CeLCkte 51 (156)
T PHA02862 3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINY--SKKKECNLCKTK 51 (156)
T ss_pred CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhc--CCCcCccCCCCe
Confidence 5799999876443222 35567889999999877643 456689999864
No 65
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=56.27 E-value=2.9 Score=43.26 Aligned_cols=43 Identities=33% Similarity=0.736 Sum_probs=30.4
Q ss_pred ccccccccccc-----CCCCceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 59 DVGCEQCGSGE-----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 59 ~~~C~~C~~~~-----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
..+|.+|...+ ......-|+.|..+||..|+.- . .-.||.|..
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r--~-----s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR--K-----SPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc--c-----CCCCCchHH
Confidence 56788885433 1345567999999999999882 1 123999975
No 66
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.18 E-value=1.8 Score=40.15 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=39.4
Q ss_pred ccccccccccccccccCCCCce------eecccCCCccccccCCCCCCCCCC----CccCcccccC
Q 020737 54 RGDYGDVGCEQCGSGERAEELL------LCDKCDKGFHMKCLRPIVVRVPIG----TWLCPKCSGQ 109 (322)
Q Consensus 54 ~~~~~~~~C~~C~~~~~~~~ll------~Cd~C~~~~H~~Cl~Ppl~~~p~g----~W~C~~C~~~ 109 (322)
++...+..|.+|-..+.++.+- .|-+-.+|.|+.|+.-.+.+---| .=.||.|.-+
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 3344578899999887554433 466778899999997665542222 5789999875
No 67
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=56.01 E-value=2.1 Score=41.75 Aligned_cols=54 Identities=28% Similarity=0.731 Sum_probs=37.4
Q ss_pred ccccccccccccccCC-CCceeecccCCCccccccCCCCCCCCC-----CCccCcccccC
Q 020737 56 DYGDVGCEQCGSGERA-EELLLCDKCDKGFHMKCLRPIVVRVPI-----GTWLCPKCSGQ 109 (322)
Q Consensus 56 ~~~~~~C~~C~~~~~~-~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~-----g~W~C~~C~~~ 109 (322)
+.+...|..|+..+.. ..+++|+.|..|||..|+.+.-..... ...+|+.|...
T Consensus 236 ~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~ 295 (345)
T KOG1632|consen 236 DYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVL 295 (345)
T ss_pred ccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeec
Confidence 4446778888875433 567799999999999999843222111 13899999873
No 68
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=55.77 E-value=10 Score=39.99 Aligned_cols=48 Identities=27% Similarity=0.673 Sum_probs=34.8
Q ss_pred ccccccccccCCCCceeecccCCCc-cccccCCCCCCCCCCCccCcccccC
Q 020737 60 VGCEQCGSGERAEELLLCDKCDKGF-HMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 60 ~~C~~C~~~~~~~~ll~Cd~C~~~~-H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
..|..|+.. .+....+|..|+... |..|-.-. ..+|.+.=||++|-..
T Consensus 2 ~~Cp~Cg~~-n~~~akFC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE-NPNNNRFCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc-CCCCCccccccCCCCCCCcCCCCC-CCCCcccccccccCCc
Confidence 468889875 456677899998753 35676543 5688888899999654
No 69
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=55.63 E-value=6.4 Score=37.60 Aligned_cols=31 Identities=29% Similarity=0.737 Sum_probs=24.1
Q ss_pred cccccccccccC------CCCceeecccCCCcc-ccccC
Q 020737 59 DVGCEQCGSGER------AEELLLCDKCDKGFH-MKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~~------~~~ll~Cd~C~~~~H-~~Cl~ 90 (322)
..+| .|..... .+.|++|..|+-||| ..|+.
T Consensus 128 G~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 128 GLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred ceeE-EecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 4567 7877653 379999999999999 67764
No 70
>PHA02929 N1R/p28-like protein; Provisional
Probab=52.17 E-value=6.1 Score=36.48 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=32.1
Q ss_pred ccccccccccccCCCC-----ceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 58 GDVGCEQCGSGERAEE-----LLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 58 ~~~~C~~C~~~~~~~~-----ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
.+..|.+|...-.... ...=..|...||..|+...+... =.||.|+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~ 224 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRT 224 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCC
Confidence 3578999988522211 12234788999999998776543 37999986
No 71
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=50.60 E-value=3.3 Score=25.28 Aligned_cols=39 Identities=26% Similarity=0.562 Sum_probs=23.4
Q ss_pred ccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCccc
Q 020737 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106 (322)
Q Consensus 62 C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C 106 (322)
|.+|... .....-..|+..||..|+...+. .+...||.|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHH---hCcCCCCCC
Confidence 5667665 22333346888899999875433 233457665
No 72
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=46.53 E-value=3.6 Score=28.28 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=26.0
Q ss_pred cccccccccCC-CCce-eec--ccCCCccccccCCCCCCCCCCCccCccc
Q 020737 61 GCEQCGSGERA-EELL-LCD--KCDKGFHMKCLRPIVVRVPIGTWLCPKC 106 (322)
Q Consensus 61 ~C~~C~~~~~~-~~ll-~Cd--~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C 106 (322)
.|.+|....++ +.++ -|. +--+++|..||...+..- +...|+-|
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~--~~~~C~iC 48 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINES--GNKTCEIC 48 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHc--CCCcCCCC
Confidence 47888873333 3333 232 223689999998766442 23478777
No 73
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=45.25 E-value=12 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.587 Sum_probs=16.1
Q ss_pred eecccCCCccccccC--------CCCCCCCCCCccCcccccCC
Q 020737 76 LCDKCDKGFHMKCLR--------PIVVRVPIGTWLCPKCSGQR 110 (322)
Q Consensus 76 ~Cd~C~~~~H~~Cl~--------Ppl~~~p~g~W~C~~C~~~~ 110 (322)
.|..|...|...=-+ .+...+|+ +|.||.|...+
T Consensus 3 ~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~-~w~CP~C~a~K 44 (47)
T PF00301_consen 3 QCPVCGYVYDPEKGDPENGIPPGTPFEDLPD-DWVCPVCGAPK 44 (47)
T ss_dssp EETTTSBEEETTTBBGGGTB-TT--GGGS-T-T-B-TTTSSBG
T ss_pred CCCCCCEEEcCCcCCcccCcCCCCCHHHCCC-CCcCcCCCCcc
Confidence 455665555443222 12234543 69999998753
No 74
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=45.18 E-value=16 Score=32.02 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=17.7
Q ss_pred CCceeecccCCCccccccCCCC
Q 020737 72 EELLLCDKCDKGFHMKCLRPIV 93 (322)
Q Consensus 72 ~~ll~Cd~C~~~~H~~Cl~Ppl 93 (322)
..|.-|..|.++||+.-|-++-
T Consensus 122 nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 122 NVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred heEEecCCccceeehhhCCCCc
Confidence 4455699999999999987753
No 75
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=44.05 E-value=14 Score=23.86 Aligned_cols=27 Identities=30% Similarity=0.864 Sum_probs=19.2
Q ss_pred eecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 76 LCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 76 ~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
.|..|+..||.. ...|.-+..|..|-.
T Consensus 3 ~C~~Cg~~Yh~~------~~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 3 ICPKCGRIYHIE------FNPPKVEGVCDNCGG 29 (36)
T ss_dssp EETTTTEEEETT------TB--SSTTBCTTTTE
T ss_pred CcCCCCCccccc------cCCCCCCCccCCCCC
Confidence 688999999954 334556789999865
No 76
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=43.37 E-value=20 Score=24.88 Aligned_cols=34 Identities=21% Similarity=0.538 Sum_probs=19.3
Q ss_pred eecccCCCccccccC--------CCCCCCCCCCccCcccccCC
Q 020737 76 LCDKCDKGFHMKCLR--------PIVVRVPIGTWLCPKCSGQR 110 (322)
Q Consensus 76 ~Cd~C~~~~H~~Cl~--------Ppl~~~p~g~W~C~~C~~~~ 110 (322)
.|..|...|+..==+ .+...+|. +|.||.|...+
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~-~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDLPD-DWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHCCC-CCCCCCCCCcH
Confidence 466666655543211 12233544 79999998643
No 77
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.04 E-value=10 Score=34.73 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=33.9
Q ss_pred ccccccccccccccccCCCCceeecccCCCccccccCCCCCCCCCC----CccCcccccC
Q 020737 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIG----TWLCPKCSGQ 109 (322)
Q Consensus 54 ~~~~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g----~W~C~~C~~~ 109 (322)
|.|+ ..-|..|+..-..++.+- -.|...||+.|++-.-..+|.. .+.||.|..+
T Consensus 46 DsDY-~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 46 DSDY-NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred hcCC-CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 3344 456888887643333221 1488899999997543333322 3899999874
No 78
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=43.01 E-value=17 Score=22.68 Aligned_cols=11 Identities=36% Similarity=1.398 Sum_probs=8.9
Q ss_pred CCccCcccccC
Q 020737 99 GTWLCPKCSGQ 109 (322)
Q Consensus 99 g~W~C~~C~~~ 109 (322)
..|.||.|...
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 56999999763
No 79
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=42.97 E-value=6.8 Score=36.74 Aligned_cols=55 Identities=25% Similarity=0.492 Sum_probs=40.4
Q ss_pred ccccccccccccccc-------CCCCceeecccCCCccccccCCCC---CCCCCCCccCcccccC
Q 020737 55 GDYGDVGCEQCGSGE-------RAEELLLCDKCDKGFHMKCLRPIV---VRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 55 ~~~~~~~C~~C~~~~-------~~~~ll~Cd~C~~~~H~~Cl~Ppl---~~~p~g~W~C~~C~~~ 109 (322)
.-....+|..|-... -+.+||-|..|++.=|.+||.-.. ..+..-.|.|-+|..-
T Consensus 220 ~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~c 284 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYC 284 (336)
T ss_pred cccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeeccee
Confidence 344467898886532 357899999999999999997332 2244558999999763
No 80
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=42.40 E-value=8 Score=34.54 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=32.0
Q ss_pred ccccccccccccCCCCceeecccCCCccccccCCCCCC------------CCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVR------------VPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~------------~p~g~W~C~~C~~~ 109 (322)
++..|.||...-.. . ....|+..|++.|+...+.. -..+..-||.|...
T Consensus 17 ~~~~CpICld~~~d-P--VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 17 GDFDCNICLDQVRD-P--VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CccCCccCCCcCCC-c--EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 35779999875322 2 22468999999998654321 02235789999874
No 81
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=41.07 E-value=13 Score=24.62 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=25.3
Q ss_pred cccccccccccCC--CCceeecccCCCccccccC
Q 020737 59 DVGCEQCGSGERA--EELLLCDKCDKGFHMKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~~~--~~ll~Cd~C~~~~H~~Cl~ 90 (322)
...|.+|++.-.. ..-+.|+.|....|..|..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 4679999886543 3667899999999999976
No 82
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.74 E-value=3.6 Score=31.26 Aligned_cols=49 Identities=22% Similarity=0.577 Sum_probs=22.7
Q ss_pred ccccccccccccc----CCCCceeecccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 57 YGDVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 57 ~~~~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
.+..+|.+|+... +....+.|..|....--.|+.. +..+|.-.||.|..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY---Erkeg~q~CpqCkt 59 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY---ERKEGNQVCPQCKT 59 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH---HHHTS-SB-TTT--
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHH---HhhcCcccccccCC
Confidence 3467899999843 4567789999977666677763 34467789999985
No 83
>PLN02400 cellulose synthase
Probab=40.46 E-value=20 Score=39.92 Aligned_cols=49 Identities=22% Similarity=0.588 Sum_probs=38.3
Q ss_pred cccccccccccc----CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
...+|++|+... +.+..+.|..|.-..--.|+. -+..+|.=.||.|.-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE---YERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE---YERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh---eecccCCccCcccCCc
Confidence 356899999852 456778999998888888887 4456788899999763
No 84
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=39.63 E-value=17 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=21.4
Q ss_pred cccccccccccCCCCceeecccCCCccccccC
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~ 90 (322)
...|.+|++.-..+..+. --|+..||..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~-~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVV-FPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEE-eCCCeEEeccccc
Confidence 567999999754443332 2456899999974
No 85
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=39.53 E-value=10 Score=22.98 Aligned_cols=13 Identities=38% Similarity=1.083 Sum_probs=10.4
Q ss_pred CCCccCcccccCC
Q 020737 98 IGTWLCPKCSGQR 110 (322)
Q Consensus 98 ~g~W~C~~C~~~~ 110 (322)
+|+|.|+.|....
T Consensus 2 ~g~W~C~~C~~~N 14 (30)
T PF00641_consen 2 EGDWKCPSCTFMN 14 (30)
T ss_dssp SSSEEETTTTEEE
T ss_pred CcCccCCCCcCCc
Confidence 5799999997643
No 86
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=39.08 E-value=23 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.559 Sum_probs=21.0
Q ss_pred cccccccccCCCCceeecccCCCcccccc
Q 020737 61 GCEQCGSGERAEELLLCDKCDKGFHMKCL 89 (322)
Q Consensus 61 ~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl 89 (322)
.|.+|++..++...=.|+.|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 58899875433325579999999998873
No 87
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=38.91 E-value=11 Score=24.81 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=25.1
Q ss_pred cccccccccccCCC-CceeecccCCCccccccC
Q 020737 59 DVGCEQCGSGERAE-ELLLCDKCDKGFHMKCLR 90 (322)
Q Consensus 59 ~~~C~~C~~~~~~~-~ll~Cd~C~~~~H~~Cl~ 90 (322)
..+|.+|++.-... ..+.|..|....|..|..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 46799998865332 367899999999999986
No 88
>PLN02436 cellulose synthase A
Probab=38.87 E-value=20 Score=39.89 Aligned_cols=48 Identities=23% Similarity=0.618 Sum_probs=38.2
Q ss_pred ccccccccccc----CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
..+|++|+... +.+..+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye---yer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKTR 87 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCc
Confidence 56899999853 455678999999888889987 4456788899999864
No 89
>PLN02189 cellulose synthase
Probab=37.93 E-value=21 Score=39.59 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=38.7
Q ss_pred ccccccccccc----cCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSG----ERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~----~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+..+|.+|+.. .+....+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye---yer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE---YERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCc
Confidence 35689999985 3456778999999888888987 4456788899999763
No 90
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=37.55 E-value=20 Score=39.93 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=38.6
Q ss_pred cccccccccccc----CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+..+|.+|+... +....+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE---YEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 356899999852 456678999999888889997 4556788899999763
No 91
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=36.63 E-value=17 Score=21.08 Aligned_cols=11 Identities=45% Similarity=1.298 Sum_probs=8.8
Q ss_pred CCccCcccccC
Q 020737 99 GTWLCPKCSGQ 109 (322)
Q Consensus 99 g~W~C~~C~~~ 109 (322)
|+|.|+.|...
T Consensus 1 g~W~C~~C~~~ 11 (26)
T smart00547 1 GDWECPACTFL 11 (26)
T ss_pred CcccCCCCCCc
Confidence 58999999653
No 92
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=36.08 E-value=14 Score=40.70 Aligned_cols=19 Identities=47% Similarity=0.506 Sum_probs=17.2
Q ss_pred CcEEEcCCCCCCeeeeccC
Q 020737 298 KSLVICPDKRGNIARFING 316 (322)
Q Consensus 298 ~~~vIda~~~GNiaRFiN~ 316 (322)
-.++||+.++||.+||||+
T Consensus 1238 p~l~id~~R~~n~~Rfinh 1256 (1306)
T KOG1083|consen 1238 PGLFIDIPRMGNGARFINH 1256 (1306)
T ss_pred ccccCChhhcccccccccc
Confidence 3689999999999999995
No 93
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=36.04 E-value=18 Score=36.88 Aligned_cols=8 Identities=38% Similarity=1.070 Sum_probs=4.8
Q ss_pred ccCccccc
Q 020737 101 WLCPKCSG 108 (322)
Q Consensus 101 W~C~~C~~ 108 (322)
|-||.|..
T Consensus 53 f~CP~C~~ 60 (483)
T PF05502_consen 53 FDCPICFS 60 (483)
T ss_pred ccCCCCCC
Confidence 66666644
No 94
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=35.91 E-value=3.8 Score=28.52 Aligned_cols=42 Identities=24% Similarity=0.571 Sum_probs=30.6
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccc
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~ 107 (322)
...|..|+....-..+-+|..|++|---.|+. +.-+.|..|.
T Consensus 7 ry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~-------deYY~CksC~ 48 (57)
T PF14445_consen 7 RYSCDLCNSSHPISELRQCVLCGRWACNSCWQ-------DEYYTCKSCN 48 (57)
T ss_pred hHhHHhhcccCcHHHHHHHhhhchhhhhhhhh-------hhHhHHHhhh
Confidence 35688888877777788999998888777776 2235666664
No 95
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=35.27 E-value=27 Score=35.38 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=38.9
Q ss_pred ccccccccccccc--CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 57 YGDVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 57 ~~~~~C~~C~~~~--~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
.++..|.+|.... .+.+++.|+.|..+||..|..|.... .+.|.|..|+..
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~ 133 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFP 133 (464)
T ss_pred ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCcccccccccc
Confidence 3456688887653 34578889999999999999976554 457899989764
No 96
>PF12773 DZR: Double zinc ribbon
Probab=35.11 E-value=37 Score=22.84 Aligned_cols=9 Identities=33% Similarity=1.173 Sum_probs=5.5
Q ss_pred CccCccccc
Q 020737 100 TWLCPKCSG 108 (322)
Q Consensus 100 ~W~C~~C~~ 108 (322)
.++|+.|-.
T Consensus 29 ~~~C~~Cg~ 37 (50)
T PF12773_consen 29 KKICPNCGA 37 (50)
T ss_pred CCCCcCCcC
Confidence 466666654
No 97
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=33.58 E-value=4.8 Score=27.44 Aligned_cols=43 Identities=33% Similarity=0.675 Sum_probs=23.8
Q ss_pred ccccccccCCCC-ce-ee--cccCCCccccccCCCCCCCCCCCccCccc
Q 020737 62 CEQCGSGERAEE-LL-LC--DKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106 (322)
Q Consensus 62 C~~C~~~~~~~~-ll-~C--d~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C 106 (322)
|.+|..+++.+. |+ -| .+--++.|..||.-.+.. .+...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~--~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE--SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH--HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh--cCCCcCCCC
Confidence 678887765544 44 33 333349999999755443 334455554
No 98
>PF02428 Prot_inhib_II: Potato type II proteinase inhibitor family; InterPro: IPR003465 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Members of the Pin2 family are proteinase inhibitors that belong to MEROPS inhibitor family I20, clan IA and are restricted to plants. They inhibit serine peptidases belonging to MEROPS peptidase family S1 [] (IPR001254 from INTERPRO). They have a multidomain structure [], which permits circular permutation of the sequences. It was been shown that some naturally occurring Pin2 proteins, have an `ancestral' circularly permuted structure []. Circular permutation/ rearrangements of sequences has also been observed between species, such as favin from Vicia faba and the lectin concanavalin A from Canavalia ensiformis [] or amongst members of the plant aspartyl proteinases and human lung surfactant proteins []. The Pin2 family of proteinase inhibitors are present in seeds, leaves and other organs. Perhaps the best known representatives are the wound-induced proteinase inhibitors [, ], which contain up to eight sequence-repeats (the `IP repeats'). The sequence of the IP repeats is quite variable, only the cysteines constituting the four disulphide bridges and a single proline residue are conserved throughout all the known repeat sequences. The structure of the proteinase inhibitor complex is known [].; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1PJU_C 1OYV_I 1QH2_B 1FYB_A 1CE3_A 2JZM_A 1YTP_A 2JYY_A 1TIH_A 4SGB_I ....
Probab=31.73 E-value=26 Score=24.61 Aligned_cols=7 Identities=71% Similarity=0.895 Sum_probs=3.2
Q ss_pred CCceeEE
Q 020737 262 DMTFIAE 268 (322)
Q Consensus 262 ~g~fv~E 268 (322)
+||||||
T Consensus 45 dGtfiCe 51 (52)
T PF02428_consen 45 DGTFICE 51 (52)
T ss_dssp TTEEEEE
T ss_pred CCcEEeC
Confidence 3444444
No 99
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.45 E-value=28 Score=38.62 Aligned_cols=49 Identities=20% Similarity=0.573 Sum_probs=38.7
Q ss_pred cccccccccccc----CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
...+|.+|+... +.+..+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye---ye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE---YERSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 357899999853 456778999999888888987 4556788899999763
No 100
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=31.43 E-value=12 Score=25.01 Aligned_cols=41 Identities=24% Similarity=0.638 Sum_probs=18.8
Q ss_pred ccccccccCCCCceeec--ccCCCccccccCCCCCCCCCCCccCccc
Q 020737 62 CEQCGSGERAEELLLCD--KCDKGFHMKCLRPIVVRVPIGTWLCPKC 106 (322)
Q Consensus 62 C~~C~~~~~~~~ll~Cd--~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C 106 (322)
|.+|..-. -.-+.|. .|...+|..|+.--+...... .||.|
T Consensus 1 C~~C~~iv--~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIV--TQGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB---SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhH--eeeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 45665532 2334687 699999999997544443221 78877
No 101
>PLN02195 cellulose synthase A
Probab=31.36 E-value=30 Score=38.18 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=38.1
Q ss_pred ccccccccccc----CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~----~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
..+|.+|+... +....+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye---yer~eg~q~CpqCkt~ 57 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE---YEIKEGRKVCLRCGGP 57 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 46899999842 445678999999888889987 4556788899999864
No 102
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=29.00 E-value=86 Score=24.93 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=30.7
Q ss_pred cChhhhHHHHHHHHHHHhCCCCCeEEEEeCCCceeeeecccCCCCceeEEe-eeee
Q 020737 219 LSKEDTETLEQCRAMCKRGECPPLVVVYDSCEGFTVEADGQIKDMTFIAEY-IGDV 273 (322)
Q Consensus 219 ~~~ed~~~~~~~~r~~q~g~~~~l~v~~~~~kG~gv~a~~~I~~g~fv~EY-~Gev 273 (322)
++.+|.+.+.....-. ....||-|.++..|..|.|++|= .|.|
T Consensus 74 v~p~d~~~l~~~~~~~------------~~~~~~~l~~D~~l~~G~c~iet~~g~i 117 (128)
T PF02108_consen 74 VHPDDYEALEELLEDE------------LPELGWELVADPSLAPGDCRIETEDGII 117 (128)
T ss_pred ECHHHHHHHHHHHHHH------------HhhcCCEEEecCCCCCCCEEEEECCeeE
Confidence 5667777666554311 13567799999999999999997 4555
No 103
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=28.98 E-value=28 Score=27.35 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=33.0
Q ss_pred cccccccccccCCCCce-eecccCC-CccccccCCCCCCCCCCCccCcccccC
Q 020737 59 DVGCEQCGSGERAEELL-LCDKCDK-GFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll-~Cd~C~~-~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
+..|.+|-+-..+-.++ .||.|.. .+.-.|+-=.+..+ .+.+||.+|...
T Consensus 27 DgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV-~d~~yc~ectr~ 78 (110)
T KOG1705|consen 27 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGV-SDAYYCKECTRQ 78 (110)
T ss_pred CCcccccccccccceeeeeehhcCCccccCceEEecCCcc-cchHHHHHHHhh
Confidence 46688888877777776 8999987 45555653222222 235899999753
No 104
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=27.95 E-value=18 Score=23.66 Aligned_cols=9 Identities=33% Similarity=1.235 Sum_probs=7.1
Q ss_pred CccCccccc
Q 020737 100 TWLCPKCSG 108 (322)
Q Consensus 100 ~W~C~~C~~ 108 (322)
-|+|+.|-.
T Consensus 32 ~~~C~~CGE 40 (46)
T TIGR03831 32 ALVCPQCGE 40 (46)
T ss_pred ccccccCCC
Confidence 399999965
No 105
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.90 E-value=25 Score=37.97 Aligned_cols=39 Identities=28% Similarity=0.628 Sum_probs=29.7
Q ss_pred ccccccccccCCCCceee-cccCCCccccccCCCCCCCCCCCccCccccc
Q 020737 60 VGCEQCGSGERAEELLLC-DKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (322)
Q Consensus 60 ~~C~~C~~~~~~~~ll~C-d~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~ 108 (322)
..|..|... =++-.- =.|...||+.|++ .++--||.|..
T Consensus 841 skCs~C~~~---LdlP~VhF~CgHsyHqhC~e-------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGT---LDLPFVHFLCGHSYHQHCLE-------DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCc---cccceeeeecccHHHHHhhc-------cCcccCCccch
Confidence 579999875 333333 3699999999998 55678999997
No 106
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=27.75 E-value=75 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHhCCCCCeEEEEeCCCc---eeeeecccCCCCceeE
Q 020737 231 RAMCKRGECPPLVVVYDSCEG---FTVEADGQIKDMTFIA 267 (322)
Q Consensus 231 ~r~~q~g~~~~l~v~~~~~kG---~gv~a~~~I~~g~fv~ 267 (322)
-|++-+...|...+......| ..++|.++|++|+=|+
T Consensus 74 ~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 74 ARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELT 113 (116)
T ss_pred HHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEe
Confidence 355667778888887776666 8999999999998553
No 107
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.69 E-value=31 Score=32.37 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=19.8
Q ss_pred cccccccccccCCCCceeeccc
Q 020737 59 DVGCEQCGSGERAEELLLCDKC 80 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C 80 (322)
+.+|.||..+.+.+.|.+|..|
T Consensus 15 dniCsVCkl~Td~~tLsfChiC 36 (285)
T PF06937_consen 15 DNICSVCKLGTDTETLSFCHIC 36 (285)
T ss_pred Cceeeeeeecccccceeeccee
Confidence 4789999999889999999887
No 108
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.90 E-value=1.1e+02 Score=34.09 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=17.9
Q ss_pred ccccccccccccccCCCCceeecccCC
Q 020737 56 DYGDVGCEQCGSGERAEELLLCDKCDK 82 (322)
Q Consensus 56 ~~~~~~C~~C~~~~~~~~ll~Cd~C~~ 82 (322)
+.....|..|+.. .....|..|+.
T Consensus 623 EVg~RfCpsCG~~---t~~frCP~CG~ 646 (1121)
T PRK04023 623 EIGRRKCPSCGKE---TFYRRCPFCGT 646 (1121)
T ss_pred cccCccCCCCCCc---CCcccCCCCCC
Confidence 3446789999987 56668888875
No 109
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=25.70 E-value=30 Score=29.80 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=16.3
Q ss_pred cccccccccCCCCceeecccCCCccc
Q 020737 61 GCEQCGSGERAEELLLCDKCDKGFHM 86 (322)
Q Consensus 61 ~C~~C~~~~~~~~ll~Cd~C~~~~H~ 86 (322)
.|..|+- .++.-++.|..|.+||--
T Consensus 2 aC~YCG~-~~p~~vv~C~~c~kWFCN 26 (152)
T PF09416_consen 2 ACAYCGI-HDPSCVVKCNTCNKWFCN 26 (152)
T ss_dssp S-TTT-----CCCEEEETTTTEEEES
T ss_pred CccccCC-CCcccEeEcCCCCcEeec
Confidence 3777875 366889999999998843
No 110
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=22 Score=33.22 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=34.3
Q ss_pred cccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccCCc
Q 020737 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (322)
Q Consensus 59 ~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~ 111 (322)
+..|.+|-.. -.-..|-.|+..|-+.|+-..++. ..--+||.|+..-.
T Consensus 215 d~kC~lC~e~---~~~ps~t~CgHlFC~~Cl~~~~t~--~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEE---PEVPSCTPCGHLFCLSCLLISWTK--KKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecc---cCCcccccccchhhHHHHHHHHHh--hccccCchhhhhcc
Confidence 5669999876 556679999999999998853222 11247999997543
No 111
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=28 Score=32.99 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=35.0
Q ss_pred cccccccccccccCCCCceeecccCCCccccccCCCCCCCCCCCccCcccccCCc
Q 020737 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~~ 111 (322)
.....|.+|-.. -.-.-|--|+..|-++|+.-...+-++ ||-|+....
T Consensus 237 ~a~~kC~LCLe~---~~~pSaTpCGHiFCWsCI~~w~~ek~e----CPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLEN---RSNPSATPCGHIFCWSCILEWCSEKAE----CPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecC---CCCCCcCcCcchHHHHHHHHHHccccC----CCcccccCC
Confidence 335779999876 223357789989999998877666555 999997543
No 112
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=23.16 E-value=28 Score=32.70 Aligned_cols=49 Identities=33% Similarity=0.690 Sum_probs=32.7
Q ss_pred cccccccccc-CCCCc-eeec--ccCCCccccccCCCCCCCCCC-----CccCccccc
Q 020737 60 VGCEQCGSGE-RAEEL-LLCD--KCDKGFHMKCLRPIVVRVPIG-----TWLCPKCSG 108 (322)
Q Consensus 60 ~~C~~C~~~~-~~~~l-l~Cd--~C~~~~H~~Cl~Ppl~~~p~g-----~W~C~~C~~ 108 (322)
..|.+|.+.. ..+.. +.|- .|+...|+.|+.--+..+..| +=+||.|..
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~ 240 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEK 240 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhc
Confidence 5688887755 33444 4564 599999999998533332223 458999986
No 113
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=22.56 E-value=81 Score=29.97 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHhCCCCCeEEEEeCCCceeeeecc
Q 020737 231 RAMCKRGECPPLVVVYDSCEGFTVEADG 258 (322)
Q Consensus 231 ~r~~q~g~~~~l~v~~~~~kG~gv~a~~ 258 (322)
--++|+|+++++.||-..++||||-|+.
T Consensus 244 l~tVe~rvqpk~hVfGhvhe~~Gvta~G 271 (305)
T KOG3947|consen 244 LNTVERRVQPKYHVFGHVHEGHGVTADG 271 (305)
T ss_pred HHhHhhccccceEEeeeeecCceeeecC
Confidence 4678899999999999999999999963
No 114
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.61 E-value=34 Score=28.88 Aligned_cols=52 Identities=23% Similarity=0.522 Sum_probs=32.9
Q ss_pred cccccccccccc-CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGE-RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~-~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
++..|.||.+.. .+|---.|..|..-|-.-|-+-....-.+-.|.|.-|...
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 357899999864 2233335777777776677663222222337999999874
No 115
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=21.50 E-value=20 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.791 Sum_probs=22.4
Q ss_pred ccccccccccCCCCceeecccCCCccccccCCC
Q 020737 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPI 92 (322)
Q Consensus 60 ~~C~~C~~~~~~~~ll~Cd~C~~~~H~~Cl~Pp 92 (322)
..| .|.- ..||.|-+|+..-|-.|.+|.
T Consensus 34 ~~C-~C~L----kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 34 NKC-ACSL----KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred ccc-ccch----HHHHHHhhccchhccccccHH
Confidence 445 5554 479999999999999999974
No 116
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.77 E-value=46 Score=32.45 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=33.8
Q ss_pred cccccccccccccCC--CCceeecccCCCc--------cccccCCCCCCCCCC-CccCcccccC
Q 020737 57 YGDVGCEQCGSGERA--EELLLCDKCDKGF--------HMKCLRPIVVRVPIG-TWLCPKCSGQ 109 (322)
Q Consensus 57 ~~~~~C~~C~~~~~~--~~ll~Cd~C~~~~--------H~~Cl~Ppl~~~p~g-~W~C~~C~~~ 109 (322)
+.+..|.+|+...++ =.++-|..|.-.| |..|..-..-.+..- .--||.|+-+
T Consensus 13 dl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 346789999985432 2577899997654 556765432233322 4679999765
No 117
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.42 E-value=76 Score=30.51 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=28.7
Q ss_pred cccccccccccc----------CCCCceeecccCCCccccccCCCCCCCCCCCccCcccccC
Q 020737 58 GDVGCEQCGSGE----------RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (322)
Q Consensus 58 ~~~~C~~C~~~~----------~~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~ 109 (322)
...+|.+|+..- .....+.|..|.-.||+.= -.|+.|-..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR------------VKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 468899999852 2346788999998888642 358888753
No 118
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.09 E-value=42 Score=31.60 Aligned_cols=43 Identities=23% Similarity=0.592 Sum_probs=20.2
Q ss_pred cccccccccccccc-------C---CCCceeecccCCCccccccCCCCCCCCCCCccCcccccCC
Q 020737 56 DYGDVGCEQCGSGE-------R---AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110 (322)
Q Consensus 56 ~~~~~~C~~C~~~~-------~---~~~ll~Cd~C~~~~H~~Cl~Ppl~~~p~g~W~C~~C~~~~ 110 (322)
.+...+|.+||..- . +...+.|..|.--||+. ...||.|-...
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~------------R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV------------RIKCPYCGNTD 221 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--------------TTS-TTT---S
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec------------CCCCcCCCCCC
Confidence 34468999999841 1 23788999999877754 24699997753
Done!