Query 020738
Match_columns 322
No_of_seqs 50 out of 52
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 07:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020738.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020738hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dp7p_ a.4.5.20 (P:) Class II 21.6 15 0.0011 26.5 1.2 39 115-158 37-75 (76)
2 d1j9ba_ c.47.1.12 (A:) Arsenat 18.4 22 0.0016 27.1 1.6 53 196-250 7-65 (138)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 18.1 23 0.0017 25.7 1.7 18 196-213 7-24 (114)
4 d1z3ea1 c.47.1.12 (A:1-114) Re 17.2 25 0.0018 25.7 1.6 18 196-213 7-24 (114)
5 d1kt7a_ b.60.1.1 (A:) Retinol 16.1 22 0.0016 26.6 1.1 26 238-263 133-158 (175)
6 d2vv5a2 d.58.43.1 (A:180-280) 13.7 39 0.0028 23.3 1.8 17 127-143 77-93 (101)
7 d1kcfa2 c.55.3.7 (A:39-256) Mi 10.6 23 0.0017 28.4 -0.4 18 232-249 192-210 (218)
8 d1lr7a1 g.3.11.3 (A:64-88) Dom 9.8 43 0.0031 19.9 0.8 15 144-158 1-15 (26)
9 d1avgi_ b.60.1.3 (I:) Thrombin 9.3 32 0.0023 25.6 0.0 19 238-256 123-141 (142)
10 d1wnaa1 d.319.1.1 (A:1-127) Hy 7.1 68 0.0049 25.2 1.1 39 232-270 71-124 (127)
No 1
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.60 E-value=15 Score=26.46 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCCCchHHHHHHHHHHHHhCCCCCCCCCCCcccceeeeceeec
Q 020738 115 PMMPDDSQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLH 158 (322)
Q Consensus 115 pv~PDDSe~Cv~~l~~aL~~rGi~Lp~PN~tCD~vfCyCGiRL~ 158 (322)
|+.|.+=.+|+-.+-=.++.| +.+..=..-|+|+|||++
T Consensus 37 ~l~~a~FgKliR~vFP~~~~R-----RLg~rG~skYhY~Gir~k 75 (76)
T d1dp7p_ 37 PVNAASFGKLIRSVFMGLRTR-----RLGTRGNSKYHYYGLRIK 75 (76)
T ss_dssp CCCHHHHHHHHHHHSTTCEEE-----EESSTTCCEEEEEEEEEC
T ss_pred ccCHHHHHHHHHHHCCCceee-----ecCCCCCceEEEeeeEec
Confidence 666666666665544332222 112223356999999997
No 2
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=18.37 E-value=22 Score=27.12 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHhhhCCCCCCCCcccccccc----cccCcchhhhhhHH--Hhhccccccc
Q 020738 196 YSGCTKCLGALQMLKGGSKNGTAEHEDNRAS----KMFSRDCQLMGLTW--LLARNKTAYI 250 (322)
Q Consensus 196 l~gCskCL~AL~~l~~~~~~~n~~~~~~r~~----~~~~rDCqLMGLtW--LLarN~T~Y~ 250 (322)
...||+|-.||.+|+.++-.- .--+=+.. .+-.+=.+.+|.-| |+.++.+.|.
T Consensus 7 ~p~Cs~srkal~~L~~~~i~~--~~idy~k~pls~~eL~~ll~~lg~~~~~Li~~~~~~~k 65 (138)
T d1j9ba_ 7 NPACGTSRNTLEMIRNSGTEP--TIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYE 65 (138)
T ss_dssp CTTCHHHHHHHHHHHHTTCCC--EEECTTTSCCCHHHHHHHHHHHTSCHHHHBCCSSHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCe--EEEeeccCCCCHHHHHHHHHHccCCHHHHHHccCchhh
Confidence 468999999999999764210 00000000 11222255667666 6776766664
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.06 E-value=23 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.6
Q ss_pred CCChhHHHHHHHhhhCCC
Q 020738 196 YSGCTKCLGALQMLKGGS 213 (322)
Q Consensus 196 l~gCskCL~AL~~l~~~~ 213 (322)
...|++|-.++++|+.++
T Consensus 7 ~p~Cs~srka~~~L~~~~ 24 (114)
T d1rw1a_ 7 IKACDTMKKARTWLDEHK 24 (114)
T ss_dssp CSSCHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHcC
Confidence 468999999999999764
No 4
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=17.17 E-value=25 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.3
Q ss_pred CCChhHHHHHHHhhhCCC
Q 020738 196 YSGCTKCLGALQMLKGGS 213 (322)
Q Consensus 196 l~gCskCL~AL~~l~~~~ 213 (322)
...|++|-.||.+|+.++
T Consensus 7 ~~~C~~~rka~~~L~~~~ 24 (114)
T d1z3ea1 7 SPSCTSCRKARAWLEEHE 24 (114)
T ss_dssp CTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHCC
Confidence 468999999999998764
No 5
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.09 E-value=22 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.476 Sum_probs=21.9
Q ss_pred hHHHhhccccccchhHHHHHHHHHhh
Q 020738 238 LTWLLARNKTAYIPTVSAVLRAIMYS 263 (322)
Q Consensus 238 LtWLLarN~T~Y~~tvsAVlrAlM~s 263 (322)
..|+|+|+++..-+.+...++-++..
T Consensus 133 ~~wilsR~~~~~~~~~~~~v~~~~~~ 158 (175)
T d1kt7a_ 133 YSFVFARDPSGFSPEVQKIVRQRQEE 158 (175)
T ss_dssp EEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred eEEEEEccCCCCcHHHHHHHHHHHHh
Confidence 35999999999999988888877664
No 6
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.70 E-value=39 Score=23.29 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=14.4
Q ss_pred HHHHHHHhCCCCCCCCC
Q 020738 127 SLQSALVSKNVKIPQPN 143 (322)
Q Consensus 127 ~l~~aL~~rGi~Lp~PN 143 (322)
.|.++|+.+||++|-|-
T Consensus 77 ~I~~~l~~~gI~ip~P~ 93 (101)
T d2vv5a2 77 RIKREFDAAGISFPYPQ 93 (101)
T ss_dssp HHHHHHHHHTCCCCCCE
T ss_pred HHHHHHHHcCCcCCCCc
Confidence 56779999999999874
No 7
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=10.62 E-value=23 Score=28.37 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=13.9
Q ss_pred chhhhhhHHHh-hcccccc
Q 020738 232 DCQLMGLTWLL-ARNKTAY 249 (322)
Q Consensus 232 DCqLMGLtWLL-arN~T~Y 249 (322)
||-|+|+.|+= ++|.+-|
T Consensus 192 Ds~Lq~l~~lkw~~~~~~~ 210 (218)
T d1kcfa2 192 DSALIASGWMRWQAQLKHY 210 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 99999999986 5555443
No 8
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.82 E-value=43 Score=19.92 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=13.0
Q ss_pred CCcccceeeeceeec
Q 020738 144 ASCDAILCFCGIRLH 158 (322)
Q Consensus 144 ~tCD~vfCyCGiRL~ 158 (322)
+|||.|-|+=|-|-+
T Consensus 1 etcdnvdcgpgk~c~ 15 (26)
T d1lr7a1 1 ETCENVDCGPGKKCR 15 (26)
T ss_dssp CCSTTCCCCTTEEEE
T ss_pred CcccccccCCCcccc
Confidence 699999999888766
No 9
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma pallidipennis) [TaxId: 30077]}
Probab=9.34 E-value=32 Score=25.56 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.6
Q ss_pred hHHHhhccccccchhHHHH
Q 020738 238 LTWLLARNKTAYIPTVSAV 256 (322)
Q Consensus 238 LtWLLarN~T~Y~~tvsAV 256 (322)
..|+|+|+++.-+|.|.-|
T Consensus 123 ~~~iLsR~~~~~~p~a~~i 141 (142)
T d1avgi_ 123 RYLVFERTKSDTDPDAKEI 141 (142)
T ss_dssp EEEEEESSCCSSSCCHHHH
T ss_pred EEEEEECCCCCCCcchhhc
Confidence 4699999999999887543
No 10
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=7.10 E-value=68 Score=25.25 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.5
Q ss_pred chhhhhhH-HHhhccccccchhH------H--------HHHHHHHhhCCCCCCC
Q 020738 232 DCQLMGLT-WLLARNKTAYIPTV------S--------AVLRAIMYSSHPPHES 270 (322)
Q Consensus 232 DCqLMGLt-WLLarN~T~Y~~tv------s--------AVlrAlM~s~~~~~p~ 270 (322)
|=-|--|+ ||+.|-.+++-.|| + -+++.||+++.+++|.
T Consensus 71 ~~ALaELv~wl~~~G~r~~~EaVv~p~e~~~ll~~p~~~~~~~l~A~aNPtDP~ 124 (127)
T d1wnaa1 71 EEALSELVGLLLAQGARRFYEAVVSPGEMTALLDLPPEELLKRVMAIANPTDPG 124 (127)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECGGGHHHHHTSCHHHHHHHHHHHCEECCGG
T ss_pred HHHHHHHHHHHHHcCCchhhhhhcCHHHHHHHHcCCcHHHHHHHHhhcCCCCCc
Confidence 45577788 99999998855543 2 3679999999998774
Done!