Query 020739
Match_columns 322
No_of_seqs 226 out of 1308
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.3E-51 2.8E-56 380.1 15.1 223 50-275 8-230 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 2.5E-21 5.3E-26 152.8 7.1 86 172-257 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 3.6E-21 7.9E-26 151.8 5.4 86 50-136 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.4 9.4E-14 2E-18 129.0 6.4 108 29-137 103-213 (243)
5 COG4095 Uncharacterized conser 99.1 6.2E-11 1.3E-15 93.5 5.5 84 169-255 4-87 (89)
6 COG4095 Uncharacterized conser 99.1 3E-10 6.5E-15 89.7 8.3 79 53-132 7-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.5 8.6E-06 1.9E-10 75.2 18.3 191 53-247 6-214 (220)
8 PF04193 PQ-loop: PQ loop repe 98.1 1E-05 2.2E-10 59.4 6.2 55 54-108 5-59 (61)
9 PF04193 PQ-loop: PQ loop repe 97.8 5.3E-05 1.1E-09 55.6 5.2 56 171-229 3-58 (61)
10 KOG3211 Predicted endoplasmic 96.8 0.024 5.1E-07 52.1 11.8 189 55-255 35-225 (230)
11 KOG2913 Predicted membrane pro 96.0 0.18 4E-06 47.9 13.7 169 53-225 11-215 (260)
12 PRK01021 lpxB lipid-A-disaccha 95.8 0.23 5E-06 52.4 14.5 188 55-254 14-218 (608)
13 PHA02246 hypothetical protein 94.8 0.78 1.7E-05 40.6 12.3 164 55-239 9-176 (192)
14 smart00679 CTNS Repeated motif 93.0 0.1 2.2E-06 33.2 2.6 25 65-89 2-26 (32)
15 TIGR00951 2A43 Lysosomal Cysti 92.9 0.89 1.9E-05 42.0 9.8 84 47-131 135-219 (220)
16 PHA02246 hypothetical protein 90.4 3.2 6.8E-05 36.8 9.8 81 33-119 97-177 (192)
17 smart00679 CTNS Repeated motif 89.6 0.23 5E-06 31.5 1.7 28 187-214 2-29 (32)
18 PF03650 MPC: Uncharacterised 87.5 0.17 3.8E-06 42.6 0.0 77 175-256 21-99 (119)
19 PF10688 Imp-YgjV: Bacterial i 87.3 13 0.00028 32.8 11.8 124 88-245 30-153 (163)
20 PF03650 MPC: Uncharacterised 83.3 0.72 1.6E-05 39.0 1.8 59 76-135 39-99 (119)
21 KOG2489 Transmembrane protein 82.3 11 0.00025 39.1 10.1 163 62-224 332-520 (592)
22 KOG1589 Uncharacterized conser 81.0 0.32 7E-06 40.4 -1.1 58 198-255 43-102 (118)
23 PF10688 Imp-YgjV: Bacterial i 80.3 7.2 0.00015 34.4 7.1 37 88-125 118-154 (163)
24 KOG3211 Predicted endoplasmic 77.4 5.7 0.00012 36.8 5.7 72 62-133 153-224 (230)
25 PF07578 LAB_N: Lipid A Biosyn 74.9 7.7 0.00017 30.0 5.0 59 59-120 6-65 (72)
26 KOG1589 Uncharacterized conser 70.2 3.3 7.2E-05 34.5 2.1 56 76-132 43-100 (118)
27 KOG3145 Cystine transporter Cy 60.8 31 0.00068 33.8 7.0 203 47-257 120-359 (372)
28 PF03547 Mem_trans: Membrane t 59.0 52 0.0011 31.9 8.6 12 213-224 131-142 (385)
29 KOG2913 Predicted membrane pro 56.1 8.3 0.00018 36.8 2.3 46 54-102 169-214 (260)
30 PF07578 LAB_N: Lipid A Biosyn 52.9 10 0.00022 29.4 1.9 41 200-240 24-64 (72)
31 KOG3106 ER lumen protein retai 45.1 83 0.0018 29.0 6.8 59 187-250 130-192 (212)
32 PRK01021 lpxB lipid-A-disaccha 44.7 1.6E+02 0.0035 31.6 9.9 43 82-125 169-212 (608)
33 COG3952 Predicted membrane pro 44.5 14 0.00031 30.7 1.6 60 195-254 47-106 (113)
34 COG3952 Predicted membrane pro 43.6 1.7E+02 0.0037 24.4 7.7 78 47-130 25-103 (113)
35 PRK05771 V-type ATP synthase s 43.1 4.4E+02 0.0095 28.1 13.7 49 63-122 325-373 (646)
36 TIGR00341 conserved hypothetic 38.9 1.7E+02 0.0038 28.9 8.5 52 84-135 113-164 (325)
37 PF09586 YfhO: Bacterial membr 36.6 5.9E+02 0.013 27.7 14.1 17 66-82 231-247 (843)
38 PRK11387 S-methylmethionine tr 34.7 2.6E+02 0.0057 28.1 9.5 24 54-77 370-393 (471)
39 KOG3618 Adenylyl cyclase [Gene 32.2 5.5E+02 0.012 28.9 11.3 29 90-118 88-117 (1318)
40 PF08733 PalH: PalH/RIM21; In 31.8 5.2E+02 0.011 25.6 11.1 77 55-132 167-252 (348)
41 PF06946 Phage_holin_5: Phage 29.3 2.8E+02 0.006 22.6 6.8 65 71-136 22-86 (93)
42 PF05602 CLPTM1: Cleft lip and 29.3 1E+02 0.0023 31.2 5.5 65 59-123 310-374 (438)
43 PRK10580 proY putative proline 28.4 4.4E+02 0.0095 26.4 9.8 28 50-77 359-386 (457)
44 PF05875 Ceramidase: Ceramidas 26.2 5.3E+02 0.012 23.9 12.0 47 57-104 31-78 (262)
45 PF11364 DUF3165: Protein of u 24.2 91 0.002 24.7 3.0 30 31-60 6-35 (81)
46 TIGR02003 PTS-II-BC-unk1 PTS s 24.2 76 0.0016 33.5 3.5 79 164-250 328-432 (548)
47 KOG2532 Permease of the major 23.4 3.9E+02 0.0085 27.4 8.4 140 49-191 263-413 (466)
48 PF07857 DUF1632: CEO family ( 21.5 1.8E+02 0.004 27.6 5.2 42 214-255 94-138 (254)
49 KOG2325 Predicted transporter/ 21.4 4.1E+02 0.0088 27.8 8.1 22 234-255 210-231 (488)
50 PF05297 Herpes_LMP1: Herpesvi 21.2 32 0.00069 33.6 0.0 39 90-130 32-72 (381)
51 PF07857 DUF1632: CEO family ( 20.2 2E+02 0.0044 27.3 5.2 66 48-114 180-254 (254)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.3e-51 Score=380.13 Aligned_cols=223 Identities=48% Similarity=0.890 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHH
Q 020739 50 HVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYI 129 (322)
Q Consensus 50 ~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~ 129 (322)
++|+.|+++++++|++|+|+++||+||||+|++|+.||+++++||++|+.||++++|.+.++++|++|++++++|+..|+
T Consensus 8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi~~f~ 87 (243)
T KOG1623|consen 8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYISIFL 87 (243)
T ss_pred HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHHHHHh
Confidence 33444999999999999999999999999999999999999999999999999988345689999999999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHhhhheeecChhhhHHhhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHH
Q 020739 130 TFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLS 209 (322)
Q Consensus 130 ~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~ 209 (322)
.|+++|++. +.....+.++++++.+.+....+++++|.+.+|++|++++++||+|||..+|+||||||+|+||++++
T Consensus 88 ~ya~~k~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls 164 (243)
T KOG1623|consen 88 YYAPKKKTV---KIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLS 164 (243)
T ss_pred eecCchhee---EeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHH
Confidence 999988632 22223344566666777777788887889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEechhHHHHHHHHHhhheeEEeCCccceecccccCCCccccccc
Q 020739 210 LFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRNYRRVVVEDVNKVPEHTVDVVK 275 (322)
Q Consensus 210 ~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~ql~ly~iY~~~~~~~~~~~~~~~~~~~~~~~ 275 (322)
++.++++..|++||++.+|.||++||++|++++++||.+|+.|++++.......++.+|++.+..+
T Consensus 165 ~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~~~~~~~~~~~~~~~~~ 230 (243)
T KOG1623|consen 165 FALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKIVPPKQNKKDVVVDEVL 230 (243)
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccccccccccCCccccccc
Confidence 999999999999999999999999999999999999999999998774332222333344444433
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.84 E-value=2.5e-21 Score=152.76 Aligned_cols=86 Identities=33% Similarity=0.689 Sum_probs=83.9
Q ss_pred hhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHHHHHHHHHHHHhhccCCeEEEechhHHHHHHHHHhhheeE
Q 020739 172 LLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAI 251 (322)
Q Consensus 172 ~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~ql~ly~i 251 (322)
++|++|.++++++|+||++++++++|+|+++++|+.+.++.++||.+|+.||++++|++++++|++|.+++..|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcc
Q 020739 252 YRNYRR 257 (322)
Q Consensus 252 Y~~~~~ 257 (322)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998765
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=3.6e-21 Score=151.80 Aligned_cols=86 Identities=33% Similarity=0.671 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHH
Q 020739 50 HVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYI 129 (322)
Q Consensus 50 ~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~ 129 (322)
++|++|++.++++++||+|+++|++|+||++++|+.|++++++||.+|+.||++++|++ ++.+|++|++++.+|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~-i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWP-IIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCee-EEeeHHHHHHHHHHHHhheE
Confidence 46788999999999999999999999999999999999999999999999999999985 89999999999999999999
Q ss_pred Hhccchh
Q 020739 130 TFAPKQA 136 (322)
Q Consensus 130 ~y~~~k~ 136 (322)
+|++||+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998864
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.45 E-value=9.4e-14 Score=128.97 Aligned_cols=108 Identities=20% Similarity=0.317 Sum_probs=89.9
Q ss_pred hHHHhhhhhhee---eechhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhcc
Q 020739 29 NIIFMLHAYVYV---FVANIFICFHVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKK 105 (322)
Q Consensus 29 ~~~~~~~~~~y~---~~~~~~i~~~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~ 105 (322)
++.+....++++ .-+++.+.+.+|+++.+++++||.||+-.+++++|+||+|.++..-....++++..|++||++.+
T Consensus 103 ~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~ 182 (243)
T KOG1623|consen 103 VLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIK 182 (243)
T ss_pred HHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444 33344568899999999999999999999999999999999966556668999999999999999
Q ss_pred CceeeeehhhHHHHHHHHHHHHHHHhccchhh
Q 020739 106 DAFLLITINAFGCVIETIYLALYITFAPKQAR 137 (322)
Q Consensus 106 d~~~vi~~N~~G~vl~~~yl~vy~~y~~~k~r 137 (322)
|.+ +..+|++|++++.+++.+|++|.+++.+
T Consensus 183 D~~-IaipN~iG~~l~~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 183 DFF-IAIPNVLGFLLGLIQLILYFKYPKTTEK 213 (243)
T ss_pred CeE-EEcccHHHHHHHHHHHHHhhhcCCCccc
Confidence 988 6789999999999999999999876643
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=6.2e-11 Score=93.54 Aligned_cols=84 Identities=17% Similarity=0.483 Sum_probs=77.2
Q ss_pred hHHhhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHHHHHHHHHHHHhhccCCeEEEechhHHHHHHHHHhhh
Q 020739 169 RLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMIL 248 (322)
Q Consensus 169 ~~~~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~ql~l 248 (322)
..+..|++++.++..+| |||+.+++|+||++++++++........++|..||++++|..+.+.|.+++.++..-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 35678999999999866 999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeEEeCC
Q 020739 249 YAIYRNY 255 (322)
Q Consensus 249 y~iY~~~ 255 (322)
...|..+
T Consensus 81 kI~~~~k 87 (89)
T COG4095 81 KIKYILK 87 (89)
T ss_pred HHHHHHh
Confidence 7777543
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=3e-10 Score=89.68 Aligned_cols=79 Identities=22% Similarity=0.481 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhc
Q 020739 53 IIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFA 132 (322)
Q Consensus 53 ilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~ 132 (322)
.+|.++++...++-+||..+++|+|+++++|+..|+.....+++|+.||++.+| .|+...|.++..++.+-++.-.+|.
T Consensus 7 viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~-lPii~aN~i~~il~liIl~~kI~~~ 85 (89)
T COG4095 7 VIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILIND-LPIIIANIISFILSLIILFYKIKYI 85 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHcc-CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 457777777888899999999999999999999999999999999999999998 4899999999999987777666664
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.54 E-value=8.6e-06 Score=75.23 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH--------hhhccCcee--eeehhhHHHH---
Q 020739 53 IIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYY--------AMMKKDAFL--LITINAFGCV--- 119 (322)
Q Consensus 53 ilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~Y--------G~l~~d~~~--vi~~N~~G~v--- 119 (322)
.+|.+..++-..+-+||+++++|+||++++|+..+..-+.+...|..| ..-.+-++. -+..|-+-..
T Consensus 6 ~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~ 85 (220)
T TIGR00951 6 ILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHA 85 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHH
Confidence 346666666777899999999999999999999999899999999999 333222211 0111333322
Q ss_pred --HHHHHHHHHHHhccchhhHHH--HHHHHHHHHHHHHHHHhhhheeecChhhhHHhhhhhHHHHHHHHhhcchhhhhhh
Q 020739 120 --IETIYLALYITFAPKQARLYT--LRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLV 195 (322)
Q Consensus 120 --l~~~yl~vy~~y~~~k~r~~~--~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~~lG~i~~v~si~~f~sPL~~i~~V 195 (322)
+...-..-+.+|.++.+|... ...+.......++. ..........+.+-...++.+-..+++. +-+||++.-
T Consensus 86 ~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~l~~iki~is~i---kyiPQi~~N 161 (220)
T TIGR00951 86 ILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFAT-LLVALLSPITPLAFVTMLSYIKVAVTLV---KYFPQAATN 161 (220)
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHH---HHhHHHHHH
Confidence 222222222233332222211 11111100111111 1111111111224455666666666665 559999999
Q ss_pred hccCcccccccHHHHHHHHHHHHHHHHhhc-cCCeEEEechhHHHHHHHHHhh
Q 020739 196 VRTKSVEFMPFYLSLFLTLNAVMWFFYGLF-LKDVYVAVPNVLGFIFGVVQMI 247 (322)
Q Consensus 196 iktKs~~~mp~~l~~~~~ln~~lW~~YGll-~~D~~I~ipN~iG~~l~~~ql~ 247 (322)
.|+||+++.|..-.+..+..++.-.+-.+. .+|...+.--.+++++..+-+.
T Consensus 162 y~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~ 214 (220)
T TIGR00951 162 YHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAA 214 (220)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888887666665553 3677777667777777765443
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.08 E-value=1e-05 Score=59.35 Aligned_cols=55 Identities=24% Similarity=0.516 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCce
Q 020739 54 IGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAF 108 (322)
Q Consensus 54 lG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~ 108 (322)
+|.+..++..++.+||+++.+|+||++++|...+...+.+..+|+.|+++.++.+
T Consensus 5 ~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 5 LGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4666667788889999999999999999999999999999999999999887653
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.76 E-value=5.3e-05 Score=55.56 Aligned_cols=56 Identities=16% Similarity=0.387 Sum_probs=49.1
Q ss_pred HhhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHHHHHHHHHHHHhhccCCe
Q 020739 171 RLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDV 229 (322)
Q Consensus 171 ~~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~~lW~~YGll~~D~ 229 (322)
..+|+++.++... +.+||+.+.+|+||++++++......+.++.+|++|.++.++.
T Consensus 3 ~~~g~i~~~~~~~---~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWII---SFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHH---HHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567777777665 5699999999999999999999999999999999999988764
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=96.76 E-value=0.024 Score=52.07 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=116.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhccc
Q 020739 55 GNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPK 134 (322)
Q Consensus 55 G~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~~~ 134 (322)
|..+.....+--+||+.+|+..||++|+|...+..-+++-..-+.|.+-.+=+| .-.--.+=+.++.+-+..+..+-+.
T Consensus 35 g~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF-ss~gE~~fLl~Q~vili~~if~f~~ 113 (230)
T KOG3211|consen 35 GLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF-SSYGEYPFLLLQAVILILCIFHFSG 113 (230)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444433444457899999999999999999999999999999999997766544 2233333344554444333332221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhheeec-ChhhhHHhhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHHH
Q 020739 135 QARLYTLRLLLLLNFGGFGSILLLSHFLAK-GSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLT 213 (322)
Q Consensus 135 k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~-~~~~~~~~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ 213 (322)
+..+...++. -.+. + ...++.. .+-...+..-..|.- +.-++-+.|+..-.|+|++..+++...+.++
T Consensus 114 --~~~~~v~~l~----~~~~-v-~~~~~sk~~p~~~~~L~~~~~l~---i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf 182 (230)
T KOG3211|consen 114 --QTVTVVQFLG----YIAL-V-VSVLASKALPLWIITLAQNLCLP---IVVVSRLLQIQCNYHNRSTGQLSLITVFLSF 182 (230)
T ss_pred --ceeehhhHHH----HHHH-H-HHHHHHhhhhHHHHHHHHhcCch---hhhHHHHHHHHHHhcccccchhHHHHHHHHh
Confidence 0111111110 0000 0 1111111 111122222222221 2225779999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-CCeEEEechhHHHHHHHHHhhheeEEeCC
Q 020739 214 LNAVMWFFYGLFL-KDVYVAVPNVLGFIFGVVQMILYAIYRNY 255 (322)
Q Consensus 214 ln~~lW~~YGll~-~D~~I~ipN~iG~~l~~~ql~ly~iY~~~ 255 (322)
-.+..-.+|.+.. +|.-++..-++..+++.+-.+-.++|++.
T Consensus 183 ~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 183 GGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999999999985 67777767777777776666656666553
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.02 E-value=0.18 Score=47.91 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhc
Q 020739 53 IIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFA 132 (322)
Q Consensus 53 ilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~ 132 (322)
++|++.+++-..+-+||+...+|+||++++|+.+.+.-+.....=+.|..+.+-. ++...-.+=..++...+.+.+.|.
T Consensus 11 ~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~-~~~~~~~~yy~~~d~~l~~q~~yy 89 (260)
T KOG2913|consen 11 ILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG-STLKVQAVYYTLADSVLFVQCLYY 89 (260)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777778888999999999999999999998888777777777887766542 122222222222323344444444
Q ss_pred cchhh---------HHH-HH---HHHH---------------HHHHHHHHHHhhhh--e---eecC-hh-hhHHhhhhhH
Q 020739 133 PKQAR---------LYT-LR---LLLL---------------LNFGGFGSILLLSH--F---LAKG-SA-ARLRLLGWVC 177 (322)
Q Consensus 133 ~~k~r---------~~~-~~---~~~~---------------~~~~~~~~i~l~t~--~---~~~~-~~-~~~~~lG~i~ 177 (322)
+++.+ .+. .. .+.. .........+.... + .... .+ .....+|++.
T Consensus 90 ~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~il 169 (260)
T KOG2913|consen 90 GNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAIL 169 (260)
T ss_pred chhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHH
Confidence 33322 000 00 0000 00000011111110 0 0011 11 2233455533
Q ss_pred H-HHHHHHhhcchhhhhhhhccCcccccccHHHHHHHHHHHHHHHHhhc
Q 020739 178 V-VFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLF 225 (322)
Q Consensus 178 ~-v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~~lW~~YGll 225 (322)
. +.+++..++++||+..-.|.|+++++++.+++...+.+ +.|+.-
T Consensus 170 G~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s 215 (260)
T KOG2913|consen 170 GSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILS 215 (260)
T ss_pred HHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccc
Confidence 3 44455667899999999999999999986554444433 455554
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.80 E-value=0.23 Score=52.45 Aligned_cols=188 Identities=12% Similarity=0.129 Sum_probs=100.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHH-HHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhcc
Q 020739 55 GNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVV-ALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAP 133 (322)
Q Consensus 55 G~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~-~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~~ 133 (322)
|.+..++...--+-|-.. .+|.-+..-|.-|+. ++..+.+-+.||++.+|. +++...++|.++..=-+.+- .+
T Consensus 14 G~~~q~~F~~rf~~QW~~--sek~~~s~~p~~FW~~Sl~g~~~l~~y~~~~~~~-~~~~~q~~~~~iy~rNl~l~---~~ 87 (608)
T PRK01021 14 GLFANLFFGSAFCIQWFL--SKKRKYSYVPKIFWILSSIGAVLMICHGFIQSQF-PIALLHSFNLIIYFRNLNIA---SS 87 (608)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcCCccCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEecccceEEEeehhhhc---cc
Confidence 444443343333333333 333334455666666 899999999999888774 45655666655422111111 11
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HHhhhheeecCh---------------hhhHHhhhhhHHHHHHHHhhcchhhhhhhhc
Q 020739 134 KQARLYTLRLLLLLNFGGFGS-ILLLSHFLAKGS---------------AARLRLLGWVCVVFSVSVFAAPLSIMRLVVR 197 (322)
Q Consensus 134 ~k~r~~~~~~~~~~~~~~~~~-i~l~t~~~~~~~---------------~~~~~~lG~i~~v~si~~f~sPL~~i~~Vik 197 (322)
.+.-.+..-.+++..+..++. +.+++++....+ +.-...+|+++-++-..-| +-|-.. -+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~~Qw~~-se 163 (608)
T PRK01021 88 RPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---FIQWFY-LE 163 (608)
T ss_pred ccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---HHHHHH-HH
Confidence 111111111111111111111 112222211111 1223456776665544433 233222 23
Q ss_pred cCcccccccHHHHHHHHHHHHHHHHhhccCCeEEEechhHHHHHHHHHhhheeEEeC
Q 020739 198 TKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRN 254 (322)
Q Consensus 198 tKs~~~mp~~l~~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~ql~ly~iY~~ 254 (322)
++.-+.+|..-...+++.+.+=++|++.++|+-.++....|.+..+--+ +.+++.
T Consensus 164 ~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl--~li~~~ 218 (608)
T PRK01021 164 YNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANL--RIAYKE 218 (608)
T ss_pred hcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHH--HHHHhh
Confidence 4444568988889999999999999999999999999999998666665 344443
No 13
>PHA02246 hypothetical protein
Probab=94.80 E-value=0.78 Score=40.57 Aligned_cols=164 Identities=16% Similarity=0.248 Sum_probs=87.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCc--eeeeehhhHHHHHHHHHHHHHHHhc
Q 020739 55 GNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDA--FLLITINAFGCVIETIYLALYITFA 132 (322)
Q Consensus 55 G~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~--~~vi~~N~~G~vl~~~yl~vy~~y~ 132 (322)
...-+++....-.|+...+.|.|+..++| -.|+-....+.+-..|-++..|. +.+ .+-+....++.+.+.+ ..|+
T Consensus 9 s~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyNlL~T~~~~fqi-~svg~nl~lgivcLlv-~~~r 85 (192)
T PHA02246 9 SILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYNLLLTDASVFQI-VSVGLNLTLGIVCLLV-ASYR 85 (192)
T ss_pred HHHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHHHHhcCCceEEE-eeeehhhhhhhhheee-ehhh
Confidence 34455667777899999999999999985 56666667777888899877654 332 2223333444433322 2232
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhheeecChhhhHHhhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHH
Q 020739 133 PKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFL 212 (322)
Q Consensus 133 ~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~ 212 (322)
+|. .. .+-+.. .+.. ++++ .++ ..++--.+++.. +. .+-.+|+.+-+|||++|+.+..+.+..
T Consensus 86 kkd--~f-~~~fii----ifSL-llfl----l~~--~~evtQtVat~t-Ii--LaYi~QIIqfyKTK~SEg~n~~l~lii 148 (192)
T PHA02246 86 KKD--YF-SIPFII----VFSL-LLFL----LSD--FTALTQTVATIT-II--LAYVTQITTFYKTKSAEGTNRFLFLII 148 (192)
T ss_pred ccc--cc-cchHHH----HHHH-HHHH----Hhh--hHHHHHHHHHHH-HH--HHHHHHHHHHhhhcccCCCChhHHHHH
Confidence 221 11 111110 1111 1111 111 111112222222 22 355899999999999999998777554
Q ss_pred HHHHHHHHHHhhccC--CeEEEechhHHH
Q 020739 213 TLNAVMWFFYGLFLK--DVYVAVPNVLGF 239 (322)
Q Consensus 213 ~ln~~lW~~YGll~~--D~~I~ipN~iG~ 239 (322)
...-.+ ........ -.+|++.-...+
T Consensus 149 ~~GL~~-L~~~m~Lthv~~hIiiTEf~N~ 176 (192)
T PHA02246 149 GLGLAS-LIVSMVLTHTYVHIIATEFVNF 176 (192)
T ss_pred HHHHHH-HHHHHhhhCCcceeeHHHHHHH
Confidence 443332 22333333 356666544443
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=92.99 E-value=0.1 Score=33.17 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHhcCCCCccchhHHH
Q 020739 65 APMPTFYRVCKKKSTEGFQSLPYVV 89 (322)
Q Consensus 65 SPlp~~~~I~K~Kst~~~s~~P~v~ 89 (322)
+-+||+++++|+||++++|...+.+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHH
Confidence 5689999999999999997555443
No 15
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=92.89 E-value=0.89 Score=42.05 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhc-cCceeeeehhhHHHHHHHHHH
Q 020739 47 ICFHVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMK-KDAFLLITINAFGCVIETIYL 125 (322)
Q Consensus 47 i~~~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~-~d~~~vi~~N~~G~vl~~~yl 125 (322)
-.+.+..++.+--.....+-+||++.-+|+|||++.|.....+-+..+.-=+.-.+.. +|+. .+..-.++.++..+++
T Consensus 135 ~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~-~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 135 PLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPL-KAGLFVVSSLFNGLFA 213 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHH
Confidence 3556666666666667789999999999999999999888877666644444444422 4543 4556666666666666
Q ss_pred HHHHHh
Q 020739 126 ALYITF 131 (322)
Q Consensus 126 ~vy~~y 131 (322)
.=.+.|
T Consensus 214 ~Q~~~y 219 (220)
T TIGR00951 214 AQVFFY 219 (220)
T ss_pred HHHhhc
Confidence 554444
No 16
>PHA02246 hypothetical protein
Probab=90.43 E-value=3.2 Score=36.85 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=48.0
Q ss_pred hhhhhheeeechhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeee
Q 020739 33 MLHAYVYVFVANIFICFHVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLIT 112 (322)
Q Consensus 33 ~~~~~~y~~~~~~~i~~~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~ 112 (322)
.++..++.+.+...+.++++. ....++-+||+.+-+|+|++|+.|+.-|+..-..-.+-..-=.+++-..-++.
T Consensus 97 ifSLllfll~~~~evtQtVat------~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIii 170 (192)
T PHA02246 97 VFSLLLFLLSDFTALTQTVAT------ITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIA 170 (192)
T ss_pred HHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeH
Confidence 355555556566666666543 33556788999999999999999987777644433332222233443322444
Q ss_pred hhhHHHH
Q 020739 113 INAFGCV 119 (322)
Q Consensus 113 ~N~~G~v 119 (322)
+.....+
T Consensus 171 TEf~N~i 177 (192)
T PHA02246 171 TEFVNFV 177 (192)
T ss_pred HHHHHHH
Confidence 4444333
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=89.63 E-value=0.23 Score=31.49 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.5
Q ss_pred cchhhhhhhhccCcccccccHHHHHHHH
Q 020739 187 APLSIMRLVVRTKSVEFMPFYLSLFLTL 214 (322)
Q Consensus 187 sPL~~i~~ViktKs~~~mp~~l~~~~~l 214 (322)
+.+||+.+.+|+|+++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5689999999999999999877765543
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=87.45 E-value=0.17 Score=42.60 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHHHHHHHHHHHHhhcc--CCeEEEechhHHHHHHHHHhhheeEE
Q 020739 175 WVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFL--KDVYVAVPNVLGFIFGVVQMILYAIY 252 (322)
Q Consensus 175 ~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~~lW~~YGll~--~D~~I~ipN~iG~~l~~~ql~ly~iY 252 (322)
+.|.++.=++-.+++.++ +|..|.++..+..+..+.+.+|+-|.+.+ +|+.++..|+.-...+..|+.=++.|
T Consensus 21 FWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y 95 (119)
T PF03650_consen 21 FWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNY 95 (119)
T ss_pred eehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444434455554 58999999999999999999999999987 68888888999999999999888777
Q ss_pred eCCc
Q 020739 253 RNYR 256 (322)
Q Consensus 253 ~~~~ 256 (322)
...+
T Consensus 96 ~~~~ 99 (119)
T PF03650_consen 96 QYSQ 99 (119)
T ss_pred Hhhc
Confidence 6543
No 19
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=87.35 E-value=13 Score=32.81 Aligned_cols=124 Identities=11% Similarity=0.231 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhhheeecChh
Q 020739 88 VVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSA 167 (322)
Q Consensus 88 v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~ 167 (322)
......+.++..--.+.+.+ +-+.++.++.+-..+..++++ +... ..+. .+..+.+.+.. +
T Consensus 30 ~~~~~~~~~~~ihf~LLGa~-----taa~~~~ls~~R~~~s~~~~~---~~v~-~~Fi-------~~~~~~~~~~~---~ 90 (163)
T PF10688_consen 30 LLQAISCLLFAIHFALLGAW-----TAALSMLLSAVRNFVSIRTRS---RWVM-AVFI-------ALSLVMGLFTW---Q 90 (163)
T ss_pred HHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHhCC---HHHH-HHHH-------HHHHHHHHHHH---h
Confidence 44566666676666666654 345667777777777666543 2111 1111 11111222211 2
Q ss_pred hhHHhhhhhHHHHHHHHhhcchhhhhhhhccCcccccccHHHHHHHHHHHHHHHHhhccCCeEEEechhHHHHHHHHH
Q 020739 168 ARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQ 245 (322)
Q Consensus 168 ~~~~~lG~i~~v~si~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~q 245 (322)
.-.+.++.+++++....- .. .+.+. +=...++++.+|..|+++.+++...+-|..-...+.+.
T Consensus 91 g~~~~l~~~as~~~t~a~----------f~---~~~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 91 GWIELLPYAASVLGTIAL----------FM---LDGIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred hHHHHHHHHHHHHHHHHH----------Hh---cCchh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 445666776666554311 11 12222 22458999999999999999988888887777655554
No 20
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=83.27 E-value=0.72 Score=38.96 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=50.2
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHhhhcc--CceeeeehhhHHHHHHHHHHHHHHHhccch
Q 020739 76 KKSTEGFQSLPYVVALFSAMLWIYYAMMKK--DAFLLITINAFGCVIETIYLALYITFAPKQ 135 (322)
Q Consensus 76 ~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~--d~~~vi~~N~~G~vl~~~yl~vy~~y~~~k 135 (322)
+|..+.+|...-....+.+.+|+.|++.+. |+ .++.+|.+-...+.+++.=++.|...+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny-~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNY-LLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999998764 65 589999999999999998777775433
No 21
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=82.29 E-value=11 Score=39.07 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=95.1
Q ss_pred HHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHH------------HH-
Q 020739 62 VFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLA------------LY- 128 (322)
Q Consensus 62 ~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~------------vy- 128 (322)
=||+-=..+-=+.|+||-+|+|.-..+..++++..=++|=+=-+-.+.|.++-++|++++.+=+- +.
T Consensus 332 dfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~i~g 411 (592)
T KOG2489|consen 332 DFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGLIPG 411 (592)
T ss_pred HHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEeccccccc
Confidence 34444445555679999999999998888998888777753333346688899999998864321 11
Q ss_pred ----------HHhccchhhH---HHHHHHHHHHHHHHHHHHhhhheeecChhhhHHhhhhhHHHHHHHHhhcchhhhhhh
Q 020739 129 ----------ITFAPKQARL---YTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLV 195 (322)
Q Consensus 129 ----------~~y~~~k~r~---~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~~lG~i~~v~si~~f~sPL~~i~~V 195 (322)
-.|..++.+. ...|.+..+-...+....+++....+...-..-++-.+.+.+-.+=|.-.+||+---
T Consensus 412 v~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFIN 491 (592)
T KOG2489|consen 412 VLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFIN 491 (592)
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhh
Confidence 1121111111 112332221111111112233322222113344454444444444455568999999
Q ss_pred hccCcccccccHHHHHHHHHHHHHHHHhh
Q 020739 196 VRTKSVEFMPFYLSLFLTLNAVMWFFYGL 224 (322)
Q Consensus 196 iktKs~~~mp~~l~~~~~ln~~lW~~YGl 224 (322)
+|=||++.+|-.+..--++|.+.==++++
T Consensus 492 YKLKSVAHLPWR~~tYKa~NTFIDDlFAF 520 (592)
T KOG2489|consen 492 YKLKSVAHLPWRAFTYKAFNTFIDDLFAF 520 (592)
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888775444443
No 22
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.96 E-value=0.32 Score=40.36 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=52.2
Q ss_pred cCcccccccHHHHHHHHHHHHHHHHhhcc--CCeEEEechhHHHHHHHHHhhheeEEeCC
Q 020739 198 TKSVEFMPFYLSLFLTLNAVMWFFYGLFL--KDVYVAVPNVLGFIFGVVQMILYAIYRNY 255 (322)
Q Consensus 198 tKs~~~mp~~l~~~~~ln~~lW~~YGll~--~D~~I~ipN~iG~~l~~~ql~ly~iY~~~ 255 (322)
.|..|.++....++.+..++.|.-|.+.+ +|++++-.|++-.+-+..||.=++.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999987 79999999999999999999988888443
No 23
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=80.29 E-value=7.2 Score=34.41 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHH
Q 020739 88 VVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYL 125 (322)
Q Consensus 88 v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl 125 (322)
...++++.+|+.|+++.+++. ....|++....+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~-g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWG-GTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHH
Confidence 458999999999999999974 5677877777766443
No 24
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=77.43 E-value=5.7 Score=36.82 Aligned_cols=72 Identities=10% Similarity=0.180 Sum_probs=55.2
Q ss_pred HHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhcc
Q 020739 62 VFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAP 133 (322)
Q Consensus 62 ~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~~ 133 (322)
...|-++|+..=+|+|++|..+.+...+.+..|..=++|.....+.+.+...-++..+++.+-..-.++|++
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999987766555666666666666555555555543
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=74.93 E-value=7.7 Score=30.00 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=36.5
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCccchhHHH-HHHHHHHHHHHhhhccCceeeeehhhHHHHH
Q 020739 59 SFIVFLAPMPTFYRVCKKKSTEGFQSLPYVV-ALFSAMLWIYYAMMKKDAFLLITINAFGCVI 120 (322)
Q Consensus 59 si~~flSPlp~~~~I~K~Kst~~~s~~P~v~-~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl 120 (322)
.++...--+-|-..-.|+|. ..-|..|+. .+..+.+=+.||+..+|+. .+...++|.++
T Consensus 6 q~lF~~Rf~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV-~ilgq~~gl~i 65 (72)
T PF07578_consen 6 QLLFSSRFIVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYAIIRKDPV-FILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHhcChHH
Confidence 33343344445444444444 344555555 8999999999999999974 44555555544
No 26
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.20 E-value=3.3 Score=34.47 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=48.6
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHhhhc--cCceeeeehhhHHHHHHHHHHHHHHHhc
Q 020739 76 KKSTEGFQSLPYVVALFSAMLWIYYAMMK--KDAFLLITINAFGCVIETIYLALYITFA 132 (322)
Q Consensus 76 ~Kst~~~s~~P~v~~l~n~~lWl~YG~l~--~d~~~vi~~N~~G~vl~~~yl~vy~~y~ 132 (322)
.|..|.+|...........+.|..|++++ .|+. ++.+|.+=...+.+++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~-LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYS-LFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999876 3665 79999999999999998888884
No 27
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=60.78 E-value=31 Score=33.81 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchh-------HHH-HHHHHHHHHHHhh-hccCc--------ee
Q 020739 47 ICFHVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLP-------YVV-ALFSAMLWIYYAM-MKKDA--------FL 109 (322)
Q Consensus 47 i~~~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P-------~v~-~l~n~~lWl~YG~-l~~d~--------~~ 109 (322)
+...-.++|.+.-..=..|-.|+++-=+|+||+.+++.-- |.. +.+|+++ +|.. ++++. -|
T Consensus 120 l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~l--y~~~~iq~~y~~~~p~g~~p 197 (372)
T KOG3145|consen 120 LVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLL--YYCPKIQNQYDTSYPLGVPP 197 (372)
T ss_pred HHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHH--HhcHHhccceeccCCCCCCc
Confidence 3444445555554445567889999999999999876421 222 2333322 2221 22221 11
Q ss_pred eeehh-----hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhhheeecChhhh----HHhhhhhHHHH
Q 020739 110 LITIN-----AFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAAR----LRLLGWVCVVF 180 (322)
Q Consensus 110 vi~~N-----~~G~vl~~~yl~vy~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~----~~~lG~i~~v~ 180 (322)
+ ..| .=|+++..+-+.-...|.+..+|... ++.+. ..+.+......+.+.....+.| ...+.++=...
T Consensus 198 v-~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~-~ialg-il~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~m 274 (372)
T KOG3145|consen 198 V-TLNDVVFSLHAVLMTVITILQCFFYERGWQRVSK-GIALG-ILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAM 274 (372)
T ss_pred c-chhhhhhhHHHHHHHHHHHHHHHhhhhcccccch-hHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 122 22556666666666667665444321 11111 0011111112222222112121 12233344444
Q ss_pred HHHHhhcchhhhhhhhccCcccccccHHH----HHHHHHHHHHHHHhhccCCeEEEechhHH-------HHHHHHHhhhe
Q 020739 181 SVSVFAAPLSIMRLVVRTKSVEFMPFYLS----LFLTLNAVMWFFYGLFLKDVYVAVPNVLG-------FIFGVVQMILY 249 (322)
Q Consensus 181 si~~f~sPL~~i~~ViktKs~~~mp~~l~----~~~~ln~~lW~~YGll~~D~~I~ipN~iG-------~~l~~~ql~ly 249 (322)
+++=| .||...-.+.||+++-|..=. -.++++-+-.++-..-.+||--+..|--- +++.++-+.=.
T Consensus 275 TliKY---iPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~Qh 351 (372)
T KOG3145|consen 275 TLIKY---IPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQH 351 (372)
T ss_pred HHHHh---hhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhh
Confidence 44444 788888899999998775432 22333333333333334445444444333 33344444444
Q ss_pred eEEeCCcc
Q 020739 250 AIYRNYRR 257 (322)
Q Consensus 250 ~iY~~~~~ 257 (322)
+.|+++++
T Consensus 352 yVly~~~~ 359 (372)
T KOG3145|consen 352 YVLYPRGH 359 (372)
T ss_pred eeEecccc
Confidence 44444433
No 28
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=59.02 E-value=52 Score=31.95 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhh
Q 020739 213 TLNAVMWFFYGL 224 (322)
Q Consensus 213 ~ln~~lW~~YGl 224 (322)
..+++.|..+|.
T Consensus 131 ~~~~i~~~~~~~ 142 (385)
T PF03547_consen 131 VVNNIILWSLGY 142 (385)
T ss_pred HhhHHHHHHHHH
Confidence 334444444444
No 29
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=56.10 E-value=8.3 Score=36.77 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhh
Q 020739 54 IGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAM 102 (322)
Q Consensus 54 lG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~ 102 (322)
+|.+.+.+=..+.+||+..-+|+|+++++++..|.. ++..=..|+.
T Consensus 169 lG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~---~~~~n~~y~~ 214 (260)
T KOG2913|consen 169 LGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAF---NSLGNTTYIL 214 (260)
T ss_pred HHHHHHHHHcccccchhhhhhccCccchhHHHHHHH---HHcccccccc
Confidence 455555667888999999999999999998855554 4444445653
No 30
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=52.86 E-value=10 Score=29.35 Aligned_cols=41 Identities=12% Similarity=0.326 Sum_probs=33.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCeEEEechhHHHH
Q 020739 200 SVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFI 240 (322)
Q Consensus 200 s~~~mp~~l~~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~ 240 (322)
.-+.+|..--..+++.+.+=++||+.++|+-.++....|.+
T Consensus 24 k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~ 64 (72)
T PF07578_consen 24 KKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLF 64 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChH
Confidence 33457888888999999999999999999976666666655
No 31
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.11 E-value=83 Score=29.02 Aligned_cols=59 Identities=24% Similarity=0.416 Sum_probs=40.3
Q ss_pred cchhhhhhhhccCcccccccHHHHH----HHHHHHHHHHHhhccCCeEEEechhHHHHHHHHHhhhee
Q 020739 187 APLSIMRLVVRTKSVEFMPFYLSLF----LTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYA 250 (322)
Q Consensus 187 sPL~~i~~ViktKs~~~mp~~l~~~----~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~ql~ly~ 250 (322)
|=|||++...||+.+|.+-..-.++ =++.+.-|. |-...+|.+ -.+.++.|++|-++|.
T Consensus 130 aILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI-~r~~~e~~~----~~iai~agiVQT~ly~ 192 (212)
T KOG3106|consen 130 AILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWI-YRYVTEDFW----DPIAIVAGIVQTVLYA 192 (212)
T ss_pred HHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH-HHHHhhccc----cchHHHHHHHHHHHHH
Confidence 4599999999999999996544443 345555553 444556622 3366778888988874
No 32
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=44.73 E-value=1.6e+02 Score=31.56 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=34.6
Q ss_pred ccchhHHH-HHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHH
Q 020739 82 FQSLPYVV-ALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYL 125 (322)
Q Consensus 82 ~s~~P~v~-~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl 125 (322)
.=|..|+. +++.+.+=+.|++..+|+. .+..+++|.++.+=-+
T Consensus 169 ~~p~~FW~~s~~G~~~~l~Y~i~r~dpv-~i~g~~~g~~~y~rnl 212 (608)
T PRK01021 169 ALPALFWKASLLGGSLALLYFIRTGDPV-NILCYGCGLFPSLANL 212 (608)
T ss_pred CCcHHHHHHHHHhHHHHHHHHHHhCCce-EEEccccchhHHHHHH
Confidence 34556665 8999999999999999986 5678999998876555
No 33
>COG3952 Predicted membrane protein [Function unknown]
Probab=44.53 E-value=14 Score=30.66 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=48.7
Q ss_pred hhccCcccccccHHHHHHHHHHHHHHHHhhccCCeEEEechhHHHHHHHHHhhheeEEeC
Q 020739 195 VVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRN 254 (322)
Q Consensus 195 ViktKs~~~mp~~l~~~~~ln~~lW~~YGll~~D~~I~ipN~iG~~l~~~ql~ly~iY~~ 254 (322)
..+.++.+.+|..---++++.+.+-..|.+-++|..=++.|+.|....+.-+-+...-++
T Consensus 47 ~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~ 106 (113)
T COG3952 47 ASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERR 106 (113)
T ss_pred HHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 346777788999999999999999999999999988778899999877777655443333
No 34
>COG3952 Predicted membrane protein [Function unknown]
Probab=43.59 E-value=1.7e+02 Score=24.44 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHH-HHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHH
Q 020739 47 ICFHVTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVV-ALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYL 125 (322)
Q Consensus 47 i~~~vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~-~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl 125 (322)
....+|.+|-.+=.+-| +-|... .++++...+ |.+|+- +++...+=+.|.+-++|+.- +..|+.|++..+.-+
T Consensus 25 ~W~LiG~~g~~lFt~Rf---~VQw~~-se~a~rsv~-P~~FW~~sllGg~l~L~Yfi~~~DpV~-Vl~~~~glF~~l~nL 98 (113)
T COG3952 25 SWKLIGFSGQLLFTGRF---VVQWLA-SEHANRSVI-PVLFWYFSLLGGLLLLSYFIRRQDPVF-VLGQACGLFIYLRNL 98 (113)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH-HHhcCCCcc-hHHHHHHHHHhhHHHHHHHHHhcchHH-HHHHhhhHHHHHHHH
Confidence 45566666654422222 222222 123333333 566665 89999999999999999863 567888888877666
Q ss_pred HHHHH
Q 020739 126 ALYIT 130 (322)
Q Consensus 126 ~vy~~ 130 (322)
.+.+.
T Consensus 99 ~L~~k 103 (113)
T COG3952 99 WLIIK 103 (113)
T ss_pred HHHHH
Confidence 55444
No 35
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=43.10 E-value=4.4e+02 Score=28.07 Aligned_cols=49 Identities=16% Similarity=0.463 Sum_probs=37.3
Q ss_pred HhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHH
Q 020739 63 FLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIET 122 (322)
Q Consensus 63 flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~ 122 (322)
+..|...+-+++-.=+-++++|.|+++.+ .+++||++.+|. +-|+++-+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~----f~lfFGmM~gD~-------GyGLil~l 373 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIF----FPLFFGMMLGDA-------GYGLLLLL 373 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHH----HHHHHHHHHHhH-------HHHHHHHH
Confidence 45677778888888888899999988754 478999999994 24566555
No 36
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=38.87 E-value=1.7e+02 Score=28.85 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhccch
Q 020739 84 SLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQ 135 (322)
Q Consensus 84 ~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~~~k 135 (322)
...|+..+.-+.+=-.+|++.|+...++..=.++=.++-+.-..+-.-..++
T Consensus 113 ~~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~ 164 (325)
T TIGR00341 113 NKGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIHGFAVNLSVGDV 164 (325)
T ss_pred cHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHHHHHHHHHcCcH
Confidence 3567787888888889999999976555555555566665555554443333
No 37
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=36.63 E-value=5.9e+02 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=13.7
Q ss_pred cHHHHHHHHHhcCCCCc
Q 020739 66 PMPTFYRVCKKKSTEGF 82 (322)
Q Consensus 66 Plp~~~~I~K~Kst~~~ 82 (322)
-+|++..+.+++.+++-
T Consensus 231 llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 231 LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHhCCCccCC
Confidence 56999999988887764
No 38
>PRK11387 S-methylmethionine transporter; Provisional
Probab=34.66 E-value=2.6e+02 Score=28.10 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhc
Q 020739 54 IGNIVSFIVFLAPMPTFYRVCKKK 77 (322)
Q Consensus 54 lG~i~si~~flSPlp~~~~I~K~K 77 (322)
+.....+..++.+.-...+.+|++
T Consensus 370 l~~~~~li~y~~~~~~~i~lr~~~ 393 (471)
T PRK11387 370 ISGFAVVAVWLSICASHFMFRRRH 393 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456666665555555543
No 39
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=32.17 E-value=5.5e+02 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhccCc-eeeeehhhHHH
Q 020739 90 ALFSAMLWIYYAMMKKDA-FLLITINAFGC 118 (322)
Q Consensus 90 ~l~n~~lWl~YG~l~~d~-~~vi~~N~~G~ 118 (322)
..+.|.+|.+|=.+.... |...++-++++
T Consensus 88 I~~~~l~W~lYfav~~rs~fi~~~~~slc~ 117 (1318)
T KOG3618|consen 88 IGFACLLWSLYFAVHMRSRFIVMVAPSLCF 117 (1318)
T ss_pred HHHHHHHHHHHheeccCceeeeehHHHHHH
Confidence 567899999998766543 54555555543
No 40
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=31.76 E-value=5.2e+02 Score=25.57 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=50.5
Q ss_pred HHHHHHHHHhccHHHHHHH-HHhcCCCCccchhHHHHHHHHHHHHHHhhhccC--------ceeeeehhhHHHHHHHHHH
Q 020739 55 GNIVSFIVFLAPMPTFYRV-CKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKD--------AFLLITINAFGCVIETIYL 125 (322)
Q Consensus 55 G~i~si~~flSPlp~~~~I-~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d--------~~~vi~~N~~G~vl~~~yl 125 (322)
=.+..+++.++=+..+.|+ .|+|..--+...-+.++.+...+|.++-+...| ..| ...-.+-..+++.|.
T Consensus 167 ~lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp-~~~yl~~ial~~~ya 245 (348)
T PF08733_consen 167 DLISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILP-AFSYLFRIALSTLYA 245 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchH-HHHHHHHHHHHHHHH
Confidence 3455666888888999999 565655556778888899999999999865532 122 123445566666664
Q ss_pred HHHHHhc
Q 020739 126 ALYITFA 132 (322)
Q Consensus 126 ~vy~~y~ 132 (322)
..-..|.
T Consensus 246 ~~v~~y~ 252 (348)
T PF08733_consen 246 AWVIYYI 252 (348)
T ss_pred HHHHHHH
Confidence 4433333
No 41
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.30 E-value=2.8e+02 Score=22.55 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHHHHHHHHHhccchh
Q 020739 71 YRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQA 136 (322)
Q Consensus 71 ~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~yl~vy~~y~~~k~ 136 (322)
.+.+|+-..-.-..+|.+......++=+.+.++.+|.- +...-..|.+.++.-..+|=.+++|.+
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~-l~~~~~aG~laGlAaTGL~e~~t~r~~ 86 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGN-LALMAWAGGLAGLAATGLFEQFTNRSK 86 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHhhhhhhhHHHHHHhhhh
Confidence 44444422224468899998888888888888887642 222234577777777777666665433
No 42
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=29.28 E-value=1e+02 Score=31.23 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=49.5
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhccCceeeeehhhHHHHHHHH
Q 020739 59 SFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETI 123 (322)
Q Consensus 59 si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~YG~l~~d~~~vi~~N~~G~vl~~~ 123 (322)
+++=||+-=-.+.-++++||.+|+|....+.-+++...=++|=+=.+..+.|.+++++|++++++
T Consensus 310 ~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 310 SVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhhe
Confidence 44566777778888999999999998888887777777666643223346688999999999874
No 43
>PRK10580 proY putative proline-specific permease; Provisional
Probab=28.39 E-value=4.4e+02 Score=26.35 Aligned_cols=28 Identities=4% Similarity=0.126 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhc
Q 020739 50 HVTIIGNIVSFIVFLAPMPTFYRVCKKK 77 (322)
Q Consensus 50 ~vgilG~i~si~~flSPlp~~~~I~K~K 77 (322)
.+.-++.+..+..+..+.....+.+|++
T Consensus 359 ~l~~~~~~~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 359 VIASLATFATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667777877777777664
No 44
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=26.20 E-value=5.3e+02 Score=23.90 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=27.1
Q ss_pred HHHHHHHhccHHHHHHHHHhcCCCCccchhHHH-HHHHHHHHHHHhhhc
Q 020739 57 IVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVV-ALFSAMLWIYYAMMK 104 (322)
Q Consensus 57 i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~-~l~n~~lWl~YG~l~ 104 (322)
+.++..++.++-..++.+|++....+ .++++. .++.-..+..-+.++
T Consensus 31 lSNl~fi~~al~gl~~~~~~~~~~~~-~l~~~~l~~VGiGS~~FHaTl~ 78 (262)
T PF05875_consen 31 LSNLAFIVAALYGLYLARRRGLERRF-ALLYLGLALVGIGSFLFHATLS 78 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchh-HHHHHHHHHHHHhHHHHHhChh
Confidence 44455666677777777775554444 344443 555555566655444
No 45
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.22 E-value=91 Score=24.68 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=23.0
Q ss_pred HHhhhhhheeeechhhHHHHHHHHHHHHHH
Q 020739 31 IFMLHAYVYVFVANIFICFHVTIIGNIVSF 60 (322)
Q Consensus 31 ~~~~~~~~y~~~~~~~i~~~vgilG~i~si 60 (322)
+-.+.+.+|+|.+++.+++.+..+|.+..+
T Consensus 6 i~ILi~~~YiF~aPksIr~Tln~i~~v~~~ 35 (81)
T PF11364_consen 6 IAILILLYYIFMAPKSIRGTLNMIGLVGLV 35 (81)
T ss_pred HHHHHHHHHHHHCcHHHHhhhhHHHHHHHH
Confidence 344577899999999999888887666543
No 46
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=24.18 E-value=76 Score=33.53 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=39.1
Q ss_pred cChhhhHHhhhhhHHHHHH-------------HHhhcchhhhhhhhccCcccccccHHHHHHHHHH-------HHHHHHh
Q 020739 164 KGSAARLRLLGWVCVVFSV-------------SVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNA-------VMWFFYG 223 (322)
Q Consensus 164 ~~~~~~~~~lG~i~~v~si-------------~~f~sPL~~i~~ViktKs~~~mp~~l~~~~~ln~-------~lW~~YG 223 (322)
..+++|.++-|++.+..-. ++|+||+.=+..++=+- ++ ..++..++. +=|++|+
T Consensus 328 A~~enrk~v~~ll~saaltsfltGITEPiEFtFlFvAP~LyvvHa~l~G----~s--~~i~~~l~v~igs~G~ID~~l~~ 401 (548)
T TIGR02003 328 VDADKKAKYKMMFISAAAAVFLTGVTEPIEFLFMFAAMPLYIVYAITQG----AA--FALADLINLRVHAFGFIELITRT 401 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHH----HH--HHHHHHhCCeeccCcccHHHHhc
Confidence 3344777776664433322 37888876655544222 11 112222211 2366666
Q ss_pred hcc------CCeEEEechhHHHHHHHHHhhhee
Q 020739 224 LFL------KDVYVAVPNVLGFIFGVVQMILYA 250 (322)
Q Consensus 224 ll~------~D~~I~ipN~iG~~l~~~ql~ly~ 250 (322)
.+- .+|+.+++ +|.+...+|.+++.
T Consensus 402 ~~~~~~g~~~~~~~~~~--iGi~~~~iYy~vF~ 432 (548)
T TIGR02003 402 PMALKAGLGMDLINFVI--VSILFAGIMFFIAD 432 (548)
T ss_pred ccccccccccCchhHHH--HHHHHHHHHHHHHH
Confidence 522 35554444 67776666655544
No 47
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.41 E-value=3.9e+02 Score=27.40 Aligned_cols=140 Identities=17% Similarity=0.288 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHH-HH--HhcCCCCccchhHHHHHHHHHHHHHHh-hhccC----ceeeeehhhHHHHH
Q 020739 49 FHVTIIGNIVSFIVFLAPMPTFYR-VC--KKKSTEGFQSLPYVVALFSAMLWIYYA-MMKKD----AFLLITINAFGCVI 120 (322)
Q Consensus 49 ~~vgilG~i~si~~flSPlp~~~~-I~--K~Kst~~~s~~P~v~~l~n~~lWl~YG-~l~~d----~~~vi~~N~~G~vl 120 (322)
.++...|.-.++.+++.-+|+..+ +. .-|++|-++.+|++..+.....+-.-+ .++.+ ....-.-|.++...
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~ 342 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGG 342 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHH
Confidence 344445666666777788888765 22 346677889999999888877665555 22221 01124568888888
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhhheeec---ChhhhHHhhhhhHHHHHHHHhhcchhh
Q 020739 121 ETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAK---GSAARLRLLGWVCVVFSVSVFAAPLSI 191 (322)
Q Consensus 121 ~~~yl~vy~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~---~~~~~~~~lG~i~~v~si~~f~sPL~~ 191 (322)
..+.+.+ .-|.++..+....-.+.+ .....+ ......+..+ .++....++|..-.+.++..+.+|+..
T Consensus 343 ~ai~l~~-l~~~~~~~~~~a~~~l~~-~~~~~g-~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 343 PAVFLLV-LAFTSDEHRLLAVILLTI-AIGLSG-FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred HHHHHHe-eeecCCCcchHHHHHHHH-HHHHcc-cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 8777655 444554433211111111 000000 0001111111 222334467777777777777777654
No 48
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.52 E-value=1.8e+02 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcc---CCeEEEechhHHHHHHHHHhhheeEEeCC
Q 020739 214 LNAVMWFFYGLFL---KDVYVAVPNVLGFIFGVVQMILYAIYRNY 255 (322)
Q Consensus 214 ln~~lW~~YGll~---~D~~I~ipN~iG~~l~~~ql~ly~iY~~~ 255 (322)
+.+-.|.-||+.. ++..--.-|.+|+.+.++-.++|..-+++
T Consensus 94 l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 94 LTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 3344455577763 33444445999999999999888765443
No 49
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=21.40 E-value=4.1e+02 Score=27.77 Aligned_cols=22 Identities=14% Similarity=0.257 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHhhheeEEeCC
Q 020739 234 PNVLGFIFGVVQMILYAIYRNY 255 (322)
Q Consensus 234 pN~iG~~l~~~ql~ly~iY~~~ 255 (322)
|..+..++.+..+++.+.+-++
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 3445555555554444444343
No 50
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.16 E-value=32 Score=33.60 Aligned_cols=39 Identities=18% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhccCc--eeeeehhhHHHHHHHHHHHHHHH
Q 020739 90 ALFSAMLWIYYAMMKKDA--FLLITINAFGCVIETIYLALYIT 130 (322)
Q Consensus 90 ~l~n~~lWl~YG~l~~d~--~~vi~~N~~G~vl~~~yl~vy~~ 130 (322)
.++..+.|++ ++.+|+ -....-|+|.+++-++-++++++
T Consensus 32 ll~ail~w~~--iimsd~t~~a~~vl~sfAvvliiIIiIImlF 72 (381)
T PF05297_consen 32 LLVAILVWFF--IIMSDLTQGALTVLYSFAVVLIIIIIIIMLF 72 (381)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHH--HHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455643 233333 12345688888877776666654
No 51
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.15 E-value=2e+02 Score=27.30 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcC---CCCccchhHHH------HHHHHHHHHHHhhhccCceeeeehh
Q 020739 48 CFHVTIIGNIVSFIVFLAPMPTFYRVCKKKS---TEGFQSLPYVV------ALFSAMLWIYYAMMKKDAFLLITIN 114 (322)
Q Consensus 48 ~~~vgilG~i~si~~flSPlp~~~~I~K~Ks---t~~~s~~P~v~------~l~n~~lWl~YG~l~~d~~~vi~~N 114 (322)
+.++|++.++++=++|-+-+--+.-+..+.+ ..+-+.+.|+. .+.++..++.|...++|. |-+.+|
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~-P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNK-PKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCC-CCCCCC
Confidence 4778888888877777766655544444441 22233444443 466777788888777664 333444
Done!