Query 020739
Match_columns 322
No_of_seqs 226 out of 1308
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 21.2 88 0.003 29.7 4.6 17 173-189 370-386 (511)
2 4djk_A Probable glutamate/gamm 15.8 4.7E+02 0.016 24.5 8.4 23 55-77 374-396 (511)
3 3bkd_A Transmembrane domain of 15.5 66 0.0023 19.0 1.3 15 7-21 2-16 (26)
4 2nr1_A NR1 M2, M2; receptor, s 11.2 1.2E+02 0.0039 18.3 1.5 14 213-226 8-21 (27)
5 2ljb_A M2 protein, BM2 protein 10.2 1.2E+02 0.004 19.2 1.4 17 6-22 5-21 (35)
6 2kih_A Matrix protein 2; S31N, 9.1 1.2E+02 0.0042 19.8 1.2 16 6-21 5-20 (43)
7 3l1l_A Arginine/agmatine antip 8.8 7.9E+02 0.027 22.3 7.4 24 55-78 357-380 (445)
8 3iyz_A Aquaporin-4; water tran 5.6 1.3E+02 0.0044 28.5 0.0 11 112-122 137-147 (340)
9 3tlw_A GLR4197 protein, GLIC; 5.3 1.3E+03 0.045 20.3 6.8 15 210-224 307-321 (321)
10 2ca6_A RAN GTPase-activating p 5.1 1.5E+02 0.0052 26.8 0.2 37 283-319 341-377 (386)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=21.23 E-value=88 Score=29.73 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHHhhcch
Q 020739 173 LGWVCVVFSVSVFAAPL 189 (322)
Q Consensus 173 lG~i~~v~si~~f~sPL 189 (322)
+.-+++......|..+.
T Consensus 370 l~~~~~~~~~~~y~~~~ 386 (511)
T 4djk_A 370 ALALTVVIYLCAYFMLF 386 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444454443
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=15.80 E-value=4.7e+02 Score=24.50 Aligned_cols=23 Identities=4% Similarity=0.145 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHhc
Q 020739 55 GNIVSFIVFLAPMPTFYRVCKKK 77 (322)
Q Consensus 55 G~i~si~~flSPlp~~~~I~K~K 77 (322)
+++.....|+.+...+.+.+|++
T Consensus 374 ~~~~~~~~y~~~~~~~~~~r~~~ 396 (511)
T 4djk_A 374 TVVIYLCAYFMLFIGYIVLVLKH 396 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555666666666665554
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=15.46 E-value=66 Score=19.01 Aligned_cols=15 Identities=47% Similarity=0.786 Sum_probs=12.0
Q ss_pred CCchhhhhhhhhhhh
Q 020739 7 HDPSVFAFGLLGILQ 21 (322)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (322)
.||++.+-.++|||.
T Consensus 2 sDplv~aa~iiGilH 16 (26)
T 3bkd_A 2 SDPLVVAASIMGILH 16 (26)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHH
Confidence 588888888888775
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=11.22 E-value=1.2e+02 Score=18.31 Aligned_cols=14 Identities=50% Similarity=1.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhcc
Q 020739 213 TLNAVMWFFYGLFL 226 (322)
Q Consensus 213 ~ln~~lW~~YGll~ 226 (322)
-+.+.+|+.+|.+.
T Consensus 8 ~l~aa~wF~WGvll 21 (27)
T 2nr1_A 8 TLSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhhe
Confidence 45678999999875
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=10.20 E-value=1.2e+02 Score=19.23 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=13.0
Q ss_pred CCCchhhhhhhhhhhhh
Q 020739 6 THDPSVFAFGLLGILQI 22 (322)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (322)
+.||++.+-.++|||..
T Consensus 5 SsDplviaA~IigiLHl 21 (35)
T 2ljb_A 5 SSDPLVVAASIIGILHF 21 (35)
T ss_dssp -CCTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 56899999888888753
No 6
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=9.09 E-value=1.2e+02 Score=19.85 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=12.6
Q ss_pred CCCchhhhhhhhhhhh
Q 020739 6 THDPSVFAFGLLGILQ 21 (322)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (322)
+.||++.+-.++|||.
T Consensus 5 ssdplv~aa~iiGIlH 20 (43)
T 2kih_A 5 SSDPLVVAANIIGILH 20 (43)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 5689999988888875
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.80 E-value=7.9e+02 Score=22.30 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=13.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcC
Q 020739 55 GNIVSFIVFLAPMPTFYRVCKKKS 78 (322)
Q Consensus 55 G~i~si~~flSPlp~~~~I~K~Ks 78 (322)
+++.....|+.+.-...+.+|++.
T Consensus 357 ~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 357 SVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 444445556666666666665543
No 8
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=5.64 E-value=1.3e+02 Score=28.51 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.2
Q ss_pred ehhhHHHHHHH
Q 020739 112 TINAFGCVIET 122 (322)
Q Consensus 112 ~~N~~G~vl~~ 122 (322)
....+|.+++.
T Consensus 137 iAQ~lGA~~GA 147 (340)
T 3iyz_A 137 TAQCLGAIIGA 147 (340)
T ss_pred HHHHHHHHHHH
Confidence 34445555444
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=5.27 E-value=1.3e+03 Score=20.31 Aligned_cols=15 Identities=20% Similarity=0.653 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 020739 210 LFLTLNAVMWFFYGL 224 (322)
Q Consensus 210 ~~~~ln~~lW~~YGl 224 (322)
+.....-..|..||+
T Consensus 307 f~~~~~i~~~~~~~~ 321 (321)
T 3tlw_A 307 FLLANIILAFLFFGF 321 (321)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhccC
Confidence 444444555666663
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=5.14 E-value=1.5e+02 Score=26.79 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCchhhhhhhhhhhhhhccCCCCCC
Q 020739 283 ASEEQTNSRNNFDDKNEHEQANDQHEKARESCNQDPL 319 (322)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (322)
..++++......+|.+|+++++|++|.++.+-.+|.+
T Consensus 341 d~~~e~e~e~eeeee~eee~~~~e~~~~~~~~~~~~~ 377 (386)
T 2ca6_A 341 DDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKEL 377 (386)
T ss_dssp CSCC---------------------------------
T ss_pred ccccccccccccccccccccccccccchhhhhhhHHH
Done!